AlfalfaGEDB | Msa0063910

M. sativa cultivar zhongmu-4 / Msa0063910

KEGG: K14503
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009987 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035670 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043401 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048519 GO:0048523 GO:0048532 GO:0048545 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:1904961 GO:2000112 GO:2000113 GO:2001141
PFAM: PF05687.16

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0063910	sp\|Q8S307\|BZR1_ARATH	45.541	314	93	8	13	248	22	335	4.28e-62	201

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0063910	A0A072VDJ6	90.763	249	23	0	1	249	1	249	2.79e-165	466

TFs/TRs:

Gene ID	Type	Classification
Msa0063910	TF	BES1

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0063910	MtrunA17_Chr1g0154651	90.763	249	23	0	1	249	1	249	5.38e-169	466
Msa0063910	MtrunA17_Chr3g0141401	46.006	313	103	7	1	247	1	313	2.34e-58	187
Msa0063910	MtrunA17_Chr2g0315211	37.931	319	109	13	14	246	6	321	3.39e-25	101
Msa0063910	MtrunA17_Chr5g0403631	43.842	203	68	4	14	175	9	206	8.53e-25	100
Msa0063910	MtrunA17_Chr2g0315201	62.500	88	32	1	14	101	6	92	2.40e-17	79.7
Msa0063910	MtrunA17_Chr5g0408851	54.545	55	25	0	26	80	62	116	1.80e-11	63.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0063910	AT1G75080.2	45.541	314	93	8	13	248	22	335	4.35e-63	201
Msa0063910	AT1G75080.1	45.541	314	93	8	13	248	22	335	4.35e-63	201
Msa0063910	AT1G19350.3	44.089	313	97	8	13	247	43	355	1.16e-60	195
Msa0063910	AT1G19350.5	44.089	313	97	8	13	247	21	333	1.67e-60	194
Msa0063910	AT1G19350.1	44.089	313	97	8	13	247	21	333	1.67e-60	194
Msa0063910	AT1G19350.6	44.089	313	97	8	13	247	21	333	1.67e-60	194
Msa0063910	AT1G19350.4	44.089	313	97	8	13	247	21	333	1.67e-60	194
Msa0063910	AT3G50750.1	40.559	286	110	9	1	243	1	269	6.59e-34	124
Msa0063910	AT4G36780.1	50.000	164	46	2	14	141	16	179	5.05e-33	121
Msa0063910	AT4G18890.1	36.000	300	102	12	14	246	6	282	1.98e-22	93.6
Msa0063910	AT1G78700.1	32.727	330	107	9	14	243	6	320	1.48e-19	86.3
Msa0063910	AT2G45880.1	51.515	66	32	0	13	78	68	133	7.15e-14	71.2
Msa0063910	AT5G45300.1	54.237	59	27	0	26	84	98	156	8.45e-13	68.2
Msa0063910	AT5G45300.2	54.237	59	27	0	26	84	98	156	8.52e-13	68.2
Msa0063910	AT5G45300.3	54.237	59	27	0	26	84	112	170	8.58e-13	68.2

Find 69 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GACAAATGGGACATGGATTT+TGG	0.099494	1_2:-24672253	None:intergenic
ATCGAATATCTTTGATGTTA+TGG	0.271986	1_2:-24671475	None:intergenic
TGATGAGGGATTGGATGATT+TGG	0.284092	1_2:+24672655	Msa0063910:CDS
AGATGCAGCAAAAGGGTAAT+TGG	0.291581	1_2:-24672444	None:intergenic
CTCCATTTCCAATGAATCTA+TGG	0.308568	1_2:+24672415	Msa0063910:CDS
CTTGGGTTCGTTGGGCTAGC+AGG	0.311924	1_2:-24672473	None:intergenic
TTGGAACTCACTCTTGGAAC+TGG	0.334633	1_2:+24672674	Msa0063910:CDS
GAGTAGAGAGGAGGTGTAAC+AGG	0.350527	1_2:-24672353	None:intergenic
GGAAAATGCCATAGATTCAT+TGG	0.351258	1_2:-24672423	None:intergenic
TGCCATAGATTCATTGGAAA+TGG	0.364323	1_2:-24672417	None:intergenic
AACTGGGAAAGGAAAGATTT+AGG	0.375942	1_2:+24672691	Msa0063910:CDS
GGAATTGAAGTTGGAAAAGA+TGG	0.394254	1_2:-24672275	None:intergenic
GATGATTTGGAACTCACTCT+TGG	0.402192	1_2:+24672668	Msa0063910:CDS
TATGAAGGCTTGGGTTCGTT+GGG	0.406355	1_2:-24672481	None:intergenic
GAAGAGGTTGGCACTGCAAA+TGG	0.411998	1_2:-24672536	None:intergenic
TTGGGTTCGTTGGGCTAGCA+GGG	0.427382	1_2:-24672472	None:intergenic
TTGATTGGAGTATGAAGGCT+TGG	0.439266	1_2:-24672491	None:intergenic
CTCTTCATCTTTCAATGCTG+TGG	0.445261	1_2:+24672553	Msa0063910:CDS
AGTTGGAAAAGATGGACAAA+TGG	0.453995	1_2:-24672267	None:intergenic
GCAAAAGGATGGAACTTGAT+TGG	0.457115	1_2:-24672506	None:intergenic
GGGGTAGAAGATGCAGCAAA+AGG	0.462613	1_2:-24672452	None:intergenic
TGGTATGAAGGAATTGAAGT+TGG	0.464795	1_2:-24672284	None:intergenic
GTATGAAGGCTTGGGTTCGT+TGG	0.466162	1_2:-24672482	None:intergenic
GATATCCACAAAGGAGGAAA+AGG	0.466792	1_2:-24672320	None:intergenic
ATGGAGTCCCATGCTGGAAT+TGG	0.471276	1_2:-24672398	None:intergenic
GAAAAGGCTGAGGAGTGAAT+TGG	0.472490	1_2:-24672304	None:intergenic
CTTCTGCACAAAGAGCTTTG+AGG	0.474572	1_2:-24671554	None:intergenic
GGTGTAAGGCTTATTGATGT+TGG	0.478866	1_2:-24672377	None:intergenic
AAAGCTCTTTGTGCAGAAGC+TGG	0.483728	1_2:+24671558	Msa0063910:CDS
TTGGGGTGCAAGTAAAGCCT+TGG	0.488933	1_2:+24672615	Msa0063910:CDS
ATTGATGTTGGTGAGTAGAG+AGG	0.496798	1_2:-24672365	None:intergenic
GCAAATGGAGATTGTGCAAA+AGG	0.501672	1_2:-24672521	None:intergenic
GGAACTTGATTGGAGTATGA+AGG	0.505849	1_2:-24672496	None:intergenic
GTTGGAAAAGATGGACAAAT+GGG	0.506046	1_2:-24672266	None:intergenic
TGGGGTGCAAGTAAAGCCTT+GGG	0.507029	1_2:+24672616	Msa0063910:CDS
CTCACTCTTGGAACTGGGAA+AGG	0.507498	1_2:+24672680	Msa0063910:CDS
TGATTGGAGTATGAAGGCTT+GGG	0.509209	1_2:-24672490	None:intergenic
TTGGAAATGGAGTCCCATGC+TGG	0.515325	1_2:-24672404	None:intergenic
CCCATGCTGGAATTGGTGTA+AGG	0.517184	1_2:-24672391	None:intergenic
ATATGATGAGAGAAAGAAGA+AGG	0.521014	1_2:+24671448	Msa0063910:CDS
GTGCCTGCATCATTGTTTAG+TGG	0.523421	1_2:-24672215	None:intergenic
CTCTTTGTGCAGAAGCTGGT+TGG	0.523500	1_2:+24671562	Msa0063910:CDS
ATGGAGATTGTGCAAAAGGA+TGG	0.524930	1_2:-24672517	None:intergenic
CCTGCATCATTGTTTAGTGG+AGG	0.531453	1_2:-24672212	None:intergenic
TTGTGCAGAAGCTGGTTGGT+CGG	0.532073	1_2:+24671566	Msa0063910:CDS
CTAAGTTACCTTGCGATAGG+TGG	0.533179	1_2:-24671604	None:intergenic
TTCTCTTTCTCCTTCCACGA+TGG	0.536162	1_2:-24671423	None:intergenic
TGGGTTCGTTGGGCTAGCAG+GGG	0.542358	1_2:-24672471	None:intergenic
ATTCTAAGTTACCTTGCGAT+AGG	0.550407	1_2:-24671607	None:intergenic
TCGGAGGAAGCCATCGTGGA+AGG	0.554225	1_2:+24671413	Msa0063910:CDS
TGGAACTCACTCTTGGAACT+GGG	0.557403	1_2:+24672675	Msa0063910:CDS
TGAGGAGTGAATTGGTATGA+AGG	0.559547	1_2:-24672296	None:intergenic
CACAGCATTGAAAGATGAAG+AGG	0.562677	1_2:-24672552	None:intergenic
CACAAAGGAGGAAAAGGCTG+AGG	0.574609	1_2:-24672314	None:intergenic
ATAACATCAAAGATATTCGA+TGG	0.589300	1_2:+24671477	Msa0063910:CDS
GGGTAGAAGATGCAGCAAAA+GGG	0.593286	1_2:-24672451	None:intergenic
CCTCCACTAAACAATGATGC+AGG	0.594195	1_2:+24672212	Msa0063910:CDS
GCCTTACACCAATTCCAGCA+TGG	0.599458	1_2:+24672390	Msa0063910:CDS
CCTTACACCAATTCCAGCAT+GGG	0.605296	1_2:+24672391	Msa0063910:CDS
GGTTGGTCGGTCGAAGAAGA+CGG	0.613610	1_2:+24671579	Msa0063910:CDS
AAAGATGGACAAATGGGACA+TGG	0.629842	1_2:-24672260	None:intergenic
GATGTTGGTGAGTAGAGAGG+AGG	0.631246	1_2:-24672362	None:intergenic
GAATTCGGAGGAAGCCATCG+TGG	0.640888	1_2:+24671409	Msa0063910:CDS
AGACGGAACCACCTATCGCA+AGG	0.647720	1_2:+24671596	Msa0063910:CDS
GCATTGAAAGATGAAGAGGT+TGG	0.651739	1_2:-24672548	None:intergenic
TCGATGGACTTCGAGCTCAA+AGG	0.659335	1_2:+24671493	Msa0063910:CDS
CTGTTTGATATCCACAAAGG+AGG	0.659720	1_2:-24672326	None:intergenic
GCACTGTTTGATATCCACAA+AGG	0.716903	1_2:-24672329	None:intergenic
GAAGCATTGTGACAACAACG+AGG	0.796257	1_2:+24671530	Msa0063910:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TAATTACATATGAAAAGTAT+CGG	-	chr1_2:24671759-24671778	None:intergenic	15.0%
!!!	TAATTACATATGAAAAGTAT+CGG	-	chr1_2:24671759-24671778	None:intergenic	15.0%
!!	AAACTTCAACAAAAAGAATT+CGG	+	chr1_2:24671394-24671413	Msa0063910:CDS	20.0%
!!	TAGTATAAATGGATAGTTAT+AGG	-	chr1_2:24671677-24671696	None:intergenic	20.0%
!!	GAACAATAATGTAGTATAAA+TGG	-	chr1_2:24671688-24671707	None:intergenic	20.0%
!!!	AACATAATTATCTGATCTTT+TGG	+	chr1_2:24671712-24671731	Msa0063910:intron	20.0%
!!!	ATTGTTGTTTTTTGTGAATA+GGG	+	chr1_2:24672182-24672201	Msa0063910:intron	20.0%
!!	AAACTTCAACAAAAAGAATT+CGG	+	chr1_2:24671394-24671413	Msa0063910:CDS	20.0%
!!	TAGTATAAATGGATAGTTAT+AGG	-	chr1_2:24671677-24671696	None:intergenic	20.0%
!!	GAACAATAATGTAGTATAAA+TGG	-	chr1_2:24671688-24671707	None:intergenic	20.0%
!!!	AACATAATTATCTGATCTTT+TGG	+	chr1_2:24671712-24671731	Msa0063910:intron	20.0%
!!!	ATTGTTGTTTTTTGTGAATA+GGG	+	chr1_2:24672182-24672201	Msa0063910:intron	20.0%
!!	TTTTGTTGAAGTTTTTGTGT+CGG	-	chr1_2:24671388-24671407	None:intergenic	25.0%
!	ATCGAATATCTTTGATGTTA+TGG	-	chr1_2:24671478-24671497	None:intergenic	25.0%
!	ATAACATCAAAGATATTCGA+TGG	+	chr1_2:24671477-24671496	Msa0063910:CDS	25.0%
!!	ATCTGATGAATAAGATCTTT+TGG	-	chr1_2:24671815-24671834	None:intergenic	25.0%
!!!	ATACCAATTGATTTTCTTCA+TGG	-	chr1_2:24671914-24671933	None:intergenic	25.0%
!!!	ACATAGTTGTTTTGAACTAA+AGG	-	chr1_2:24672001-24672020	None:intergenic	25.0%
!!!	GATTGTTGTTTTTTGTGAAT+AGG	+	chr1_2:24672181-24672200	Msa0063910:intron	25.0%
!	TGATGAAAAAATTCATGATG+AGG	+	chr1_2:24672640-24672659	Msa0063910:CDS	25.0%
!	GATGAAAAAATTCATGATGA+GGG	+	chr1_2:24672641-24672660	Msa0063910:CDS	25.0%
!!	TTTTGTTGAAGTTTTTGTGT+CGG	-	chr1_2:24671388-24671407	None:intergenic	25.0%
!	ATCGAATATCTTTGATGTTA+TGG	-	chr1_2:24671478-24671497	None:intergenic	25.0%
!	ATAACATCAAAGATATTCGA+TGG	+	chr1_2:24671477-24671496	Msa0063910:CDS	25.0%
!!	ATCTGATGAATAAGATCTTT+TGG	-	chr1_2:24671815-24671834	None:intergenic	25.0%
!!!	ATACCAATTGATTTTCTTCA+TGG	-	chr1_2:24671914-24671933	None:intergenic	25.0%
!!!	ACATAGTTGTTTTGAACTAA+AGG	-	chr1_2:24672001-24672020	None:intergenic	25.0%
!!!	GATTGTTGTTTTTTGTGAAT+AGG	+	chr1_2:24672181-24672200	Msa0063910:intron	25.0%
!	TGATGAAAAAATTCATGATG+AGG	+	chr1_2:24672640-24672659	Msa0063910:CDS	25.0%
!	GATGAAAAAATTCATGATGA+GGG	+	chr1_2:24672641-24672660	Msa0063910:CDS	25.0%
	ATATGATGAGAGAAAGAAGA+AGG	+	chr1_2:24671448-24671467	Msa0063910:CDS	30.0%
	CAAGTAACAAAGAAACAAAG+AGG	-	chr1_2:24671645-24671664	None:intergenic	30.0%
	CTTCCATGAAGAAAATCAAT+TGG	+	chr1_2:24671908-24671927	Msa0063910:intron	30.0%
	AAAGGTTAAAGAAGTTGAAG+TGG	-	chr1_2:24671983-24672002	None:intergenic	30.0%
!	AATAGTGTGCATTTGAAATG+TGG	-	chr1_2:24672058-24672077	None:intergenic	30.0%
	ACTAATGTTGCAAATAAGGT+AGG	-	chr1_2:24672108-24672127	None:intergenic	30.0%
	GTACACTAATGTTGCAAATA+AGG	-	chr1_2:24672112-24672131	None:intergenic	30.0%
!!	ATTTTGGGAATAAGAGAAAG+AGG	-	chr1_2:24672240-24672259	None:intergenic	30.0%
	ATGACAAGTTCAAAAATGCT+TGG	+	chr1_2:24672596-24672615	Msa0063910:CDS	30.0%
	TGACAAGTTCAAAAATGCTT+GGG	+	chr1_2:24672597-24672616	Msa0063910:CDS	30.0%
!!!	TGAATTTTTTCATCAACCCA+AGG	-	chr1_2:24672635-24672654	None:intergenic	30.0%
	AAAAATTCATGATGAGGGAT+TGG	+	chr1_2:24672646-24672665	Msa0063910:CDS	30.0%
	ATATGATGAGAGAAAGAAGA+AGG	+	chr1_2:24671448-24671467	Msa0063910:CDS	30.0%
	CAAGTAACAAAGAAACAAAG+AGG	-	chr1_2:24671645-24671664	None:intergenic	30.0%
	CTTCCATGAAGAAAATCAAT+TGG	+	chr1_2:24671908-24671927	Msa0063910:intron	30.0%
	AAAGGTTAAAGAAGTTGAAG+TGG	-	chr1_2:24671983-24672002	None:intergenic	30.0%
!	AATAGTGTGCATTTGAAATG+TGG	-	chr1_2:24672058-24672077	None:intergenic	30.0%
	ACTAATGTTGCAAATAAGGT+AGG	-	chr1_2:24672108-24672127	None:intergenic	30.0%
	GTACACTAATGTTGCAAATA+AGG	-	chr1_2:24672112-24672131	None:intergenic	30.0%
!!	ATTTTGGGAATAAGAGAAAG+AGG	-	chr1_2:24672240-24672259	None:intergenic	30.0%
	ATGACAAGTTCAAAAATGCT+TGG	+	chr1_2:24672596-24672615	Msa0063910:CDS	30.0%
	TGACAAGTTCAAAAATGCTT+GGG	+	chr1_2:24672597-24672616	Msa0063910:CDS	30.0%
!!!	TGAATTTTTTCATCAACCCA+AGG	-	chr1_2:24672635-24672654	None:intergenic	30.0%
	AAAAATTCATGATGAGGGAT+TGG	+	chr1_2:24672646-24672665	Msa0063910:CDS	30.0%
	CTTCAACAAAAAGAATTCGG+AGG	+	chr1_2:24671397-24671416	Msa0063910:CDS	35.0%
	ATTCTAAGTTACCTTGCGAT+AGG	-	chr1_2:24671610-24671629	None:intergenic	35.0%
	AATTACACAAGCATGCATCA+AGG	-	chr1_2:24671886-24671905	None:intergenic	35.0%
!	ACAAATGGGACATGGATTTT+GGG	-	chr1_2:24672255-24672274	None:intergenic	35.0%
	GTTGGAAAAGATGGACAAAT+GGG	-	chr1_2:24672269-24672288	None:intergenic	35.0%
	AGTTGGAAAAGATGGACAAA+TGG	-	chr1_2:24672270-24672289	None:intergenic	35.0%
	GGAATTGAAGTTGGAAAAGA+TGG	-	chr1_2:24672278-24672297	None:intergenic	35.0%
	TGGTATGAAGGAATTGAAGT+TGG	-	chr1_2:24672287-24672306	None:intergenic	35.0%
	CTCCATTTCCAATGAATCTA+TGG	+	chr1_2:24672415-24672434	Msa0063910:CDS	35.0%
	TGCCATAGATTCATTGGAAA+TGG	-	chr1_2:24672420-24672439	None:intergenic	35.0%
	GGAAAATGCCATAGATTCAT+TGG	-	chr1_2:24672426-24672445	None:intergenic	35.0%
	GACAAGTTCAAAAATGCTTG+GGG	+	chr1_2:24672598-24672617	Msa0063910:CDS	35.0%
	CTTCAACAAAAAGAATTCGG+AGG	+	chr1_2:24671397-24671416	Msa0063910:CDS	35.0%
	ATTCTAAGTTACCTTGCGAT+AGG	-	chr1_2:24671610-24671629	None:intergenic	35.0%
	AATTACACAAGCATGCATCA+AGG	-	chr1_2:24671886-24671905	None:intergenic	35.0%
!	ACAAATGGGACATGGATTTT+GGG	-	chr1_2:24672255-24672274	None:intergenic	35.0%
	GTTGGAAAAGATGGACAAAT+GGG	-	chr1_2:24672269-24672288	None:intergenic	35.0%
	AGTTGGAAAAGATGGACAAA+TGG	-	chr1_2:24672270-24672289	None:intergenic	35.0%
	GGAATTGAAGTTGGAAAAGA+TGG	-	chr1_2:24672278-24672297	None:intergenic	35.0%
	TGGTATGAAGGAATTGAAGT+TGG	-	chr1_2:24672287-24672306	None:intergenic	35.0%
	CTCCATTTCCAATGAATCTA+TGG	+	chr1_2:24672415-24672434	Msa0063910:CDS	35.0%
	TGCCATAGATTCATTGGAAA+TGG	-	chr1_2:24672420-24672439	None:intergenic	35.0%
	GGAAAATGCCATAGATTCAT+TGG	-	chr1_2:24672426-24672445	None:intergenic	35.0%
	GACAAGTTCAAAAATGCTTG+GGG	+	chr1_2:24672598-24672617	Msa0063910:CDS	35.0%
!	GACAAATGGGACATGGATTT+TGG	-	chr1_2:24672256-24672275	None:intergenic	40.0%
	AAAGATGGACAAATGGGACA+TGG	-	chr1_2:24672263-24672282	None:intergenic	40.0%
	TGAGGAGTGAATTGGTATGA+AGG	-	chr1_2:24672299-24672318	None:intergenic	40.0%
	GATATCCACAAAGGAGGAAA+AGG	-	chr1_2:24672323-24672342	None:intergenic	40.0%
	CTGTTTGATATCCACAAAGG+AGG	-	chr1_2:24672329-24672348	None:intergenic	40.0%
	GCACTGTTTGATATCCACAA+AGG	-	chr1_2:24672332-24672351	None:intergenic	40.0%
!	ATTGATGTTGGTGAGTAGAG+AGG	-	chr1_2:24672368-24672387	None:intergenic	40.0%
	GGTGTAAGGCTTATTGATGT+TGG	-	chr1_2:24672380-24672399	None:intergenic	40.0%
	AGATGCAGCAAAAGGGTAAT+TGG	-	chr1_2:24672447-24672466	None:intergenic	40.0%
	TGATTGGAGTATGAAGGCTT+GGG	-	chr1_2:24672493-24672512	None:intergenic	40.0%
	TTGATTGGAGTATGAAGGCT+TGG	-	chr1_2:24672494-24672513	None:intergenic	40.0%
	GGAACTTGATTGGAGTATGA+AGG	-	chr1_2:24672499-24672518	None:intergenic	40.0%
	GCAAAAGGATGGAACTTGAT+TGG	-	chr1_2:24672509-24672528	None:intergenic	40.0%
	ATGGAGATTGTGCAAAAGGA+TGG	-	chr1_2:24672520-24672539	None:intergenic	40.0%
	GCAAATGGAGATTGTGCAAA+AGG	-	chr1_2:24672524-24672543	None:intergenic	40.0%
	GCATTGAAAGATGAAGAGGT+TGG	-	chr1_2:24672551-24672570	None:intergenic	40.0%
!	CACAGCATTGAAAGATGAAG+AGG	-	chr1_2:24672555-24672574	None:intergenic	40.0%
	CTCTTCATCTTTCAATGCTG+TGG	+	chr1_2:24672553-24672572	Msa0063910:CDS	40.0%
	TGATGAGGGATTGGATGATT+TGG	+	chr1_2:24672655-24672674	Msa0063910:CDS	40.0%
!	GATGATTTGGAACTCACTCT+TGG	+	chr1_2:24672668-24672687	Msa0063910:CDS	40.0%
!	GACAAATGGGACATGGATTT+TGG	-	chr1_2:24672256-24672275	None:intergenic	40.0%
	AAAGATGGACAAATGGGACA+TGG	-	chr1_2:24672263-24672282	None:intergenic	40.0%
	TGAGGAGTGAATTGGTATGA+AGG	-	chr1_2:24672299-24672318	None:intergenic	40.0%
	GATATCCACAAAGGAGGAAA+AGG	-	chr1_2:24672323-24672342	None:intergenic	40.0%
	CTGTTTGATATCCACAAAGG+AGG	-	chr1_2:24672329-24672348	None:intergenic	40.0%
	GCACTGTTTGATATCCACAA+AGG	-	chr1_2:24672332-24672351	None:intergenic	40.0%
!	ATTGATGTTGGTGAGTAGAG+AGG	-	chr1_2:24672368-24672387	None:intergenic	40.0%
	GGTGTAAGGCTTATTGATGT+TGG	-	chr1_2:24672380-24672399	None:intergenic	40.0%
	AGATGCAGCAAAAGGGTAAT+TGG	-	chr1_2:24672447-24672466	None:intergenic	40.0%
	TGATTGGAGTATGAAGGCTT+GGG	-	chr1_2:24672493-24672512	None:intergenic	40.0%
	TTGATTGGAGTATGAAGGCT+TGG	-	chr1_2:24672494-24672513	None:intergenic	40.0%
	GGAACTTGATTGGAGTATGA+AGG	-	chr1_2:24672499-24672518	None:intergenic	40.0%
	GCAAAAGGATGGAACTTGAT+TGG	-	chr1_2:24672509-24672528	None:intergenic	40.0%
	ATGGAGATTGTGCAAAAGGA+TGG	-	chr1_2:24672520-24672539	None:intergenic	40.0%
	GCAAATGGAGATTGTGCAAA+AGG	-	chr1_2:24672524-24672543	None:intergenic	40.0%
	GCATTGAAAGATGAAGAGGT+TGG	-	chr1_2:24672551-24672570	None:intergenic	40.0%
!	CACAGCATTGAAAGATGAAG+AGG	-	chr1_2:24672555-24672574	None:intergenic	40.0%
	CTCTTCATCTTTCAATGCTG+TGG	+	chr1_2:24672553-24672572	Msa0063910:CDS	40.0%
	TGATGAGGGATTGGATGATT+TGG	+	chr1_2:24672655-24672674	Msa0063910:CDS	40.0%
!	GATGATTTGGAACTCACTCT+TGG	+	chr1_2:24672668-24672687	Msa0063910:CDS	40.0%
	TTCTCTTTCTCCTTCCACGA+TGG	-	chr1_2:24671426-24671445	None:intergenic	45.0%
!!	GAAGCATTGTGACAACAACG+AGG	+	chr1_2:24671530-24671549	Msa0063910:CDS	45.0%
	CTTCTGCACAAAGAGCTTTG+AGG	-	chr1_2:24671557-24671576	None:intergenic	45.0%
	AAAGCTCTTTGTGCAGAAGC+TGG	+	chr1_2:24671558-24671577	Msa0063910:CDS	45.0%
	CTAAGTTACCTTGCGATAGG+TGG	-	chr1_2:24671607-24671626	None:intergenic	45.0%
	CCTGCATCATTGTTTAGTGG+AGG	-	chr1_2:24672215-24672234	None:intergenic	45.0%
	CCTCCACTAAACAATGATGC+AGG	+	chr1_2:24672212-24672231	Msa0063910:CDS	45.0%
	GTGCCTGCATCATTGTTTAG+TGG	-	chr1_2:24672218-24672237	None:intergenic	45.0%
	GAAAAGGCTGAGGAGTGAAT+TGG	-	chr1_2:24672307-24672326	None:intergenic	45.0%
	CCTTACACCAATTCCAGCAT+GGG	+	chr1_2:24672391-24672410	Msa0063910:CDS	45.0%
	GGGTAGAAGATGCAGCAAAA+GGG	-	chr1_2:24672454-24672473	None:intergenic	45.0%
	TATGAAGGCTTGGGTTCGTT+GGG	-	chr1_2:24672484-24672503	None:intergenic	45.0%
	TTGGAACTCACTCTTGGAAC+TGG	+	chr1_2:24672674-24672693	Msa0063910:CDS	45.0%
	TGGAACTCACTCTTGGAACT+GGG	+	chr1_2:24672675-24672694	Msa0063910:CDS	45.0%
	TTCTCTTTCTCCTTCCACGA+TGG	-	chr1_2:24671426-24671445	None:intergenic	45.0%
!!	GAAGCATTGTGACAACAACG+AGG	+	chr1_2:24671530-24671549	Msa0063910:CDS	45.0%
	CTTCTGCACAAAGAGCTTTG+AGG	-	chr1_2:24671557-24671576	None:intergenic	45.0%
	AAAGCTCTTTGTGCAGAAGC+TGG	+	chr1_2:24671558-24671577	Msa0063910:CDS	45.0%
	CTAAGTTACCTTGCGATAGG+TGG	-	chr1_2:24671607-24671626	None:intergenic	45.0%
	CCTGCATCATTGTTTAGTGG+AGG	-	chr1_2:24672215-24672234	None:intergenic	45.0%
	CCTCCACTAAACAATGATGC+AGG	+	chr1_2:24672212-24672231	Msa0063910:CDS	45.0%
	GTGCCTGCATCATTGTTTAG+TGG	-	chr1_2:24672218-24672237	None:intergenic	45.0%
	GAAAAGGCTGAGGAGTGAAT+TGG	-	chr1_2:24672307-24672326	None:intergenic	45.0%
	CCTTACACCAATTCCAGCAT+GGG	+	chr1_2:24672391-24672410	Msa0063910:CDS	45.0%
	GGGTAGAAGATGCAGCAAAA+GGG	-	chr1_2:24672454-24672473	None:intergenic	45.0%
	TATGAAGGCTTGGGTTCGTT+GGG	-	chr1_2:24672484-24672503	None:intergenic	45.0%
	TTGGAACTCACTCTTGGAAC+TGG	+	chr1_2:24672674-24672693	Msa0063910:CDS	45.0%
	TGGAACTCACTCTTGGAACT+GGG	+	chr1_2:24672675-24672694	Msa0063910:CDS	45.0%
!	TCGATGGACTTCGAGCTCAA+AGG	+	chr1_2:24671493-24671512	Msa0063910:CDS	50.0%
	CTCTTTGTGCAGAAGCTGGT+TGG	+	chr1_2:24671562-24671581	Msa0063910:CDS	50.0%
	TTGTGCAGAAGCTGGTTGGT+CGG	+	chr1_2:24671566-24671585	Msa0063910:CDS	50.0%
	CACAAAGGAGGAAAAGGCTG+AGG	-	chr1_2:24672317-24672336	None:intergenic	50.0%
!	CTCAGCCTTTTCCTCCTTTG+TGG	+	chr1_2:24672315-24672334	Msa0063910:CDS	50.0%
!	GAGTAGAGAGGAGGTGTAAC+AGG	-	chr1_2:24672356-24672375	None:intergenic	50.0%
!	GATGTTGGTGAGTAGAGAGG+AGG	-	chr1_2:24672365-24672384	None:intergenic	50.0%
	GCCTTACACCAATTCCAGCA+TGG	+	chr1_2:24672390-24672409	Msa0063910:CDS	50.0%
	CCCATGCTGGAATTGGTGTA+AGG	-	chr1_2:24672394-24672413	None:intergenic	50.0%
	ATGGAGTCCCATGCTGGAAT+TGG	-	chr1_2:24672401-24672420	None:intergenic	50.0%
	TTGGAAATGGAGTCCCATGC+TGG	-	chr1_2:24672407-24672426	None:intergenic	50.0%
	GGGGTAGAAGATGCAGCAAA+AGG	-	chr1_2:24672455-24672474	None:intergenic	50.0%
	GTATGAAGGCTTGGGTTCGT+TGG	-	chr1_2:24672485-24672504	None:intergenic	50.0%
	GAAGAGGTTGGCACTGCAAA+TGG	-	chr1_2:24672539-24672558	None:intergenic	50.0%
	TTGGGGTGCAAGTAAAGCCT+TGG	+	chr1_2:24672615-24672634	Msa0063910:CDS	50.0%
	TGGGGTGCAAGTAAAGCCTT+GGG	+	chr1_2:24672616-24672635	Msa0063910:CDS	50.0%
	CTCACTCTTGGAACTGGGAA+AGG	+	chr1_2:24672680-24672699	Msa0063910:CDS	50.0%
!	TCGATGGACTTCGAGCTCAA+AGG	+	chr1_2:24671493-24671512	Msa0063910:CDS	50.0%
	CTCTTTGTGCAGAAGCTGGT+TGG	+	chr1_2:24671562-24671581	Msa0063910:CDS	50.0%
	TTGTGCAGAAGCTGGTTGGT+CGG	+	chr1_2:24671566-24671585	Msa0063910:CDS	50.0%
	CACAAAGGAGGAAAAGGCTG+AGG	-	chr1_2:24672317-24672336	None:intergenic	50.0%
!	CTCAGCCTTTTCCTCCTTTG+TGG	+	chr1_2:24672315-24672334	Msa0063910:CDS	50.0%
!	GAGTAGAGAGGAGGTGTAAC+AGG	-	chr1_2:24672356-24672375	None:intergenic	50.0%
!	GATGTTGGTGAGTAGAGAGG+AGG	-	chr1_2:24672365-24672384	None:intergenic	50.0%
	GCCTTACACCAATTCCAGCA+TGG	+	chr1_2:24672390-24672409	Msa0063910:CDS	50.0%
	CCCATGCTGGAATTGGTGTA+AGG	-	chr1_2:24672394-24672413	None:intergenic	50.0%
	ATGGAGTCCCATGCTGGAAT+TGG	-	chr1_2:24672401-24672420	None:intergenic	50.0%
	TTGGAAATGGAGTCCCATGC+TGG	-	chr1_2:24672407-24672426	None:intergenic	50.0%
	GGGGTAGAAGATGCAGCAAA+AGG	-	chr1_2:24672455-24672474	None:intergenic	50.0%
	GTATGAAGGCTTGGGTTCGT+TGG	-	chr1_2:24672485-24672504	None:intergenic	50.0%
	GAAGAGGTTGGCACTGCAAA+TGG	-	chr1_2:24672539-24672558	None:intergenic	50.0%
	TTGGGGTGCAAGTAAAGCCT+TGG	+	chr1_2:24672615-24672634	Msa0063910:CDS	50.0%
	TGGGGTGCAAGTAAAGCCTT+GGG	+	chr1_2:24672616-24672635	Msa0063910:CDS	50.0%
	CTCACTCTTGGAACTGGGAA+AGG	+	chr1_2:24672680-24672699	Msa0063910:CDS	50.0%
	GAATTCGGAGGAAGCCATCG+TGG	+	chr1_2:24671409-24671428	Msa0063910:CDS	55.0%
!	GGTTGGTCGGTCGAAGAAGA+CGG	+	chr1_2:24671579-24671598	Msa0063910:CDS	55.0%
	AGACGGAACCACCTATCGCA+AGG	+	chr1_2:24671596-24671615	Msa0063910:CDS	55.0%
!!	TTGGGTTCGTTGGGCTAGCA+GGG	-	chr1_2:24672475-24672494	None:intergenic	55.0%
	GAATTCGGAGGAAGCCATCG+TGG	+	chr1_2:24671409-24671428	Msa0063910:CDS	55.0%
!	GGTTGGTCGGTCGAAGAAGA+CGG	+	chr1_2:24671579-24671598	Msa0063910:CDS	55.0%
	AGACGGAACCACCTATCGCA+AGG	+	chr1_2:24671596-24671615	Msa0063910:CDS	55.0%
!!	TTGGGTTCGTTGGGCTAGCA+GGG	-	chr1_2:24672475-24672494	None:intergenic	55.0%
	TCGGAGGAAGCCATCGTGGA+AGG	+	chr1_2:24671413-24671432	Msa0063910:CDS	60.0%
!!	TGGGTTCGTTGGGCTAGCAG+GGG	-	chr1_2:24672474-24672493	None:intergenic	60.0%
!!	CTTGGGTTCGTTGGGCTAGC+AGG	-	chr1_2:24672476-24672495	None:intergenic	60.0%
	TCGGAGGAAGCCATCGTGGA+AGG	+	chr1_2:24671413-24671432	Msa0063910:CDS	60.0%
!!	TGGGTTCGTTGGGCTAGCAG+GGG	-	chr1_2:24672474-24672493	None:intergenic	60.0%
!!	CTTGGGTTCGTTGGGCTAGC+AGG	-	chr1_2:24672476-24672495	None:intergenic	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	24671378	24672712	24671378	ID=Msa0063910;Name=Msa0063910
chr1_2	mRNA	24671378	24672712	24671378	ID=Msa0063910-mRNA-1;Parent=Msa0063910;Name=Msa0063910-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0\|0\|0\|1\|1\|1\|2\|0\|249
chr1_2	exon	24671378	24671617	24671378	ID=Msa0063910-mRNA-1:exon:8791;Parent=Msa0063910-mRNA-1
chr1_2	exon	24672203	24672712	24672203	ID=Msa0063910-mRNA-1:exon:8792;Parent=Msa0063910-mRNA-1
chr1_2	CDS	24671378	24671617	24671378	ID=Msa0063910-mRNA-1:cds;Parent=Msa0063910-mRNA-1
chr1_2	CDS	24672203	24672712	24672203	ID=Msa0063910-mRNA-1:cds;Parent=Msa0063910-mRNA-1

Gene Sequence

>Msa0063910

ATGGCTTCCGACACAAAAACTTCAACAAAAAGAATTCGGAGGAAGCCATCGTGGAAGGAGAAAGAGAAAAATATGATGAGAGAAAGAAGAAGGAGAGCCATAACATCAAAGATATTCGATGGACTTCGAGCTCAAAGGAGCTACAATTTATCGAAGCATTGTGACAACAACGAGGTCCTCAAAGCTCTTTGTGCAGAAGCTGGTTGGTCGGTCGAAGAAGACGGAACCACCTATCGCAAGGGTTACAATCCTCCACTAAACAATGATGCAGGCACCTCTTTCTCTTATTCCCAAAATCCATGTCCCATTTGTCCATCTTTTCCAACTTCAATTCCTTCATACCAATTCACTCCTCAGCCTTTTCCTCCTTTGTGGATATCAAACAGTGCTCCTGTTACACCTCCTCTCTACTCACCAACATCAATAAGCCTTACACCAATTCCAGCATGGGACTCCATTTCCAATGAATCTATGGCATTTTCCAATTACCCTTTTGCTGCATCTTCTACCCCTGCTAGCCCAACGAACCCAAGCCTTCATACTCCAATCAAGTTCCATCCTTTTGCACAATCTCCATTTGCAGTGCCAACCTCTTCATCTTTCAATGCTGTGGCTGATAACTCAATCAGTGAGATGACAAGTTCAAAAATGCTTGGGGTGCAAGTAAAGCCTTGGGTTGATGAAAAAATTCATGATGAGGGATTGGATGATTTGGAACTCACTCTTGGAACTGGGAAAGGAAAGATTTAG

Protein sequence

>Msa0063910

MASDTKTSTKRIRRKPSWKEKEKNMMRERRRRAITSKIFDGLRAQRSYNLSKHCDNNEVLKALCAEAGWSVEEDGTTYRKGYNPPLNNDAGTSFSYSQNPCPICPSFPTSIPSYQFTPQPFPPLWISNSAPVTPPLYSPTSISLTPIPAWDSISNESMAFSNYPFAASSTPASPTNPSLHTPIKFHPFAQSPFAVPTSSSFNAVADNSISEMTSSKMLGVQVKPWVDEKIHDEGLDDLELTLGTGKGKI*