AlfalfaGEDB | Msa0063910

M. sativa cultivar zhongmu-4 / Msa0063910

KEGG: K14503
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009987 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035670 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043401 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048519 GO:0048523 GO:0048532 GO:0048545 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:1904961 GO:2000112 GO:2000113 GO:2001141
PFAM: PF05687.16

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0063910	sp\|Q8S307\|BZR1_ARATH	45.541	314	93	8	13	248	22	335	4.28e-62	201

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0063910	A0A072VDJ6	90.763	249	23	0	1	249	1	249	2.79e-165	466

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0063910	TF	BES1

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0063910	MtrunA17_Chr1g0154651	90.763	249	23	0	1	249	1	249	5.38e-169	466
Msa0063910	MtrunA17_Chr3g0141401	46.006	313	103	7	1	247	1	313	2.34e-58	187
Msa0063910	MtrunA17_Chr2g0315211	37.931	319	109	13	14	246	6	321	3.39e-25	101
Msa0063910	MtrunA17_Chr5g0403631	43.842	203	68	4	14	175	9	206	8.53e-25	100
Msa0063910	MtrunA17_Chr2g0315201	62.500	88	32	1	14	101	6	92	2.40e-17	79.7
Msa0063910	MtrunA17_Chr5g0408851	54.545	55	25	0	26	80	62	116	1.80e-11	63.5

Showing 1 to 6 of 6 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0063910	AT1G75080.2	45.541	314	93	8	13	248	22	335	4.35e-63	201
Msa0063910	AT1G75080.1	45.541	314	93	8	13	248	22	335	4.35e-63	201
Msa0063910	AT1G19350.3	44.089	313	97	8	13	247	43	355	1.16e-60	195
Msa0063910	AT1G19350.5	44.089	313	97	8	13	247	21	333	1.67e-60	194
Msa0063910	AT1G19350.1	44.089	313	97	8	13	247	21	333	1.67e-60	194
Msa0063910	AT1G19350.6	44.089	313	97	8	13	247	21	333	1.67e-60	194
Msa0063910	AT1G19350.4	44.089	313	97	8	13	247	21	333	1.67e-60	194
Msa0063910	AT3G50750.1	40.559	286	110	9	1	243	1	269	6.59e-34	124
Msa0063910	AT4G36780.1	50.000	164	46	2	14	141	16	179	5.05e-33	121
Msa0063910	AT4G18890.1	36.000	300	102	12	14	246	6	282	1.98e-22	93.6

Showing 1 to 10 of 15 entries

Previous1 2Next

Find 69 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATGGACAAATGGGACA+TGG	0.629842	1_2:-24672260	None:intergenic
AAAGCTCTTTGTGCAGAAGC+TGG	0.483728	1_2:+24671558	Msa0063910:CDS
AACTGGGAAAGGAAAGATTT+AGG	0.375942	1_2:+24672691	Msa0063910:CDS
AGACGGAACCACCTATCGCA+AGG	0.647720	1_2:+24671596	Msa0063910:CDS
AGATGCAGCAAAAGGGTAAT+TGG	0.291581	1_2:-24672444	None:intergenic
AGTTGGAAAAGATGGACAAA+TGG	0.453995	1_2:-24672267	None:intergenic
ATAACATCAAAGATATTCGA+TGG	0.589300	1_2:+24671477	Msa0063910:CDS
ATATGATGAGAGAAAGAAGA+AGG	0.521014	1_2:+24671448	Msa0063910:CDS
ATCGAATATCTTTGATGTTA+TGG	0.271986	1_2:-24671475	None:intergenic
ATGGAGATTGTGCAAAAGGA+TGG	0.524930	1_2:-24672517	None:intergenic

Showing 1 to 10 of 69 entries

Previous1 2 3 4 5 6 7Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ATATGATGAGAGAAAGAAGA+AGG	+	chr1_2:24671448-24671467	Msa0063910:CDS	30.0%
CAAGTAACAAAGAAACAAAG+AGG	-	chr1_2:24671645-24671664	None:intergenic	30.0%
CTTCCATGAAGAAAATCAAT+TGG	+	chr1_2:24671908-24671927	Msa0063910:intron	30.0%
AAAGGTTAAAGAAGTTGAAG+TGG	-	chr1_2:24671983-24672002	None:intergenic	30.0%
ACTAATGTTGCAAATAAGGT+AGG	-	chr1_2:24672108-24672127	None:intergenic	30.0%
GTACACTAATGTTGCAAATA+AGG	-	chr1_2:24672112-24672131	None:intergenic	30.0%
ATGACAAGTTCAAAAATGCT+TGG	+	chr1_2:24672596-24672615	Msa0063910:CDS	30.0%
TGACAAGTTCAAAAATGCTT+GGG	+	chr1_2:24672597-24672616	Msa0063910:CDS	30.0%
AAAAATTCATGATGAGGGAT+TGG	+	chr1_2:24672646-24672665	Msa0063910:CDS	30.0%
ATATGATGAGAGAAAGAAGA+AGG	+	chr1_2:24671448-24671467	Msa0063910:CDS	30.0%

Showing 1 to 10 of 194 entries

Previous1 2 3 4 5…20Next

Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	24671378	24672712	24671378	ID=Msa0063910;Name=Msa0063910
chr1_2	mRNA	24671378	24672712	24671378	ID=Msa0063910-mRNA-1;Parent=Msa0063910;Name=Msa0063910-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0\|0\|0\|1\|1\|1\|2\|0\|249
chr1_2	exon	24671378	24671617	24671378	ID=Msa0063910-mRNA-1:exon:8791;Parent=Msa0063910-mRNA-1
chr1_2	exon	24672203	24672712	24672203	ID=Msa0063910-mRNA-1:exon:8792;Parent=Msa0063910-mRNA-1
chr1_2	CDS	24671378	24671617	24671378	ID=Msa0063910-mRNA-1:cds;Parent=Msa0063910-mRNA-1
chr1_2	CDS	24672203	24672712	24672203	ID=Msa0063910-mRNA-1:cds;Parent=Msa0063910-mRNA-1

Gene Sequence

>Msa0063910

ATGGCTTCCGACACAAAAACTTCAACAAAAAGAATTCGGAGGAAGCCATCGTGGAAGGAGAAAGAGAAAAATATGATGAGAGAAAGAAGAAGGAGAGCCATAACATCAAAGATATTCGATGGACTTCGAGCTCAAAGGAGCTACAATTTATCGAAGCATTGTGACAACAACGAGGTCCTCAAAGCTCTTTGTGCAGAAGCTGGTTGGTCGGTCGAAGAAGACGGAACCACCTATCGCAAGGGTTACAATCCTCCACTAAACAATGATGCAGGCACCTCTTTCTCTTATTCCCAAAATCCATGTCCCATTTGTCCATCTTTTCCAACTTCAATTCCTTCATACCAATTCACTCCTCAGCCTTTTCCTCCTTTGTGGATATCAAACAGTGCTCCTGTTACACCTCCTCTCTACTCACCAACATCAATAAGCCTTACACCAATTCCAGCATGGGACTCCATTTCCAATGAATCTATGGCATTTTCCAATTACCCTTTTGCTGCATCTTCTACCCCTGCTAGCCCAACGAACCCAAGCCTTCATACTCCAATCAAGTTCCATCCTTTTGCACAATCTCCATTTGCAGTGCCAACCTCTTCATCTTTCAATGCTGTGGCTGATAACTCAATCAGTGAGATGACAAGTTCAAAAATGCTTGGGGTGCAAGTAAAGCCTTGGGTTGATGAAAAAATTCATGATGAGGGATTGGATGATTTGGAACTCACTCTTGGAACTGGGAAAGGAAAGATTTAG

Protein sequence

>Msa0063910

MASDTKTSTKRIRRKPSWKEKEKNMMRERRRRAITSKIFDGLRAQRSYNLSKHCDNNEVLKALCAEAGWSVEEDGTTYRKGYNPPLNNDAGTSFSYSQNPCPICPSFPTSIPSYQFTPQPFPPLWISNSAPVTPPLYSPTSISLTPIPAWDSISNESMAFSNYPFAASSTPASPTNPSLHTPIKFHPFAQSPFAVPTSSSFNAVADNSISEMTSSKMLGVQVKPWVDEKIHDEGLDDLELTLGTGKGKI*