Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0065140 | XP_013467121.3 | 98.333 | 420 | 6 | 1 | 1 | 419 | 1 | 420 | 0.0 | 839 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0065140 | A0A396JN85 | 98.263 | 403 | 6 | 1 | 18 | 419 | 13 | 415 | 0.0 | 804 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0065140 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0065140 | MtrunA17_Chr1g0168401 | 98.263 | 403 | 6 | 1 | 18 | 419 | 13 | 415 | 0.0 | 804 |
| Msa0065140 | MtrunA17_Chr1g0186171 | 65.155 | 419 | 112 | 12 | 18 | 419 | 13 | 414 | 9.79e-159 | 454 |
| Msa0065140 | MtrunA17_Chr2g0311591 | 62.500 | 64 | 24 | 0 | 304 | 367 | 151 | 214 | 3.67e-22 | 95.5 |
| Msa0065140 | MtrunA17_Chr8g0387241 | 45.946 | 111 | 54 | 2 | 309 | 413 | 211 | 321 | 1.46e-21 | 94.7 |
| Msa0065140 | MtrunA17_Chr5g0397361 | 51.064 | 94 | 38 | 2 | 296 | 381 | 142 | 235 | 1.69e-20 | 90.1 |
| Msa0065140 | MtrunA17_Chr4g0030421 | 57.812 | 64 | 27 | 0 | 308 | 371 | 20 | 83 | 1.09e-19 | 84.7 |
| Msa0065140 | MtrunA17_Chr2g0327621 | 44.330 | 97 | 51 | 1 | 271 | 367 | 106 | 199 | 3.14e-18 | 84.0 |
| Msa0065140 | MtrunA17_Chr1g0147111 | 64.583 | 48 | 17 | 0 | 321 | 368 | 230 | 277 | 4.45e-16 | 78.2 |
| Msa0065140 | MtrunA17_Chr3g0126721 | 65.306 | 49 | 17 | 0 | 319 | 367 | 226 | 274 | 3.13e-15 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0065140 | AT1G04500.4 | 48.747 | 439 | 152 | 17 | 1 | 419 | 1 | 386 | 1.03e-109 | 328 |
| Msa0065140 | AT1G04500.1 | 48.747 | 439 | 152 | 17 | 1 | 419 | 1 | 386 | 1.03e-109 | 328 |
| Msa0065140 | AT1G04500.3 | 48.578 | 422 | 147 | 16 | 18 | 419 | 6 | 377 | 8.83e-106 | 318 |
| Msa0065140 | AT2G33350.2 | 48.661 | 448 | 162 | 16 | 1 | 419 | 1 | 409 | 3.33e-105 | 317 |
| Msa0065140 | AT2G33350.1 | 48.552 | 449 | 162 | 17 | 1 | 419 | 1 | 410 | 1.64e-103 | 313 |
| Msa0065140 | AT2G33350.4 | 47.796 | 431 | 158 | 15 | 18 | 419 | 6 | 398 | 3.64e-99 | 301 |
| Msa0065140 | AT2G33350.5 | 47.796 | 431 | 158 | 15 | 18 | 419 | 26 | 418 | 1.23e-98 | 301 |
| Msa0065140 | AT1G04500.2 | 43.923 | 362 | 132 | 16 | 1 | 344 | 1 | 309 | 5.53e-67 | 218 |
| Msa0065140 | AT2G33350.3 | 44.324 | 370 | 141 | 15 | 1 | 344 | 1 | 331 | 1.73e-66 | 216 |
| Msa0065140 | AT1G63820.1 | 47.244 | 127 | 56 | 3 | 266 | 385 | 134 | 256 | 1.56e-27 | 111 |
| Msa0065140 | AT5G41380.1 | 62.667 | 75 | 23 | 1 | 309 | 383 | 201 | 270 | 9.27e-24 | 101 |
| Msa0065140 | AT3G12890.1 | 56.471 | 85 | 33 | 1 | 314 | 398 | 130 | 210 | 5.06e-23 | 97.8 |
| Msa0065140 | AT4G27900.1 | 39.806 | 103 | 36 | 2 | 271 | 368 | 178 | 259 | 4.75e-16 | 78.2 |
| Msa0065140 | AT4G27900.2 | 39.806 | 103 | 36 | 2 | 271 | 368 | 178 | 259 | 4.75e-16 | 78.2 |
| Msa0065140 | AT5G53420.2 | 65.957 | 47 | 16 | 0 | 321 | 367 | 137 | 183 | 1.63e-15 | 74.7 |
| Msa0065140 | AT5G53420.5 | 65.957 | 47 | 16 | 0 | 321 | 367 | 137 | 183 | 1.63e-15 | 74.7 |
| Msa0065140 | AT5G53420.4 | 65.957 | 47 | 16 | 0 | 321 | 367 | 137 | 183 | 1.63e-15 | 74.7 |
| Msa0065140 | AT5G53420.1 | 65.957 | 47 | 16 | 0 | 321 | 367 | 216 | 262 | 3.45e-15 | 75.9 |
| Msa0065140 | AT5G59990.1 | 42.373 | 118 | 49 | 2 | 298 | 413 | 138 | 238 | 1.72e-14 | 73.2 |
Find 70 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTTGAGATATGTTGTTTA+AGG | 0.115598 | 1_2:-27028295 | None:intergenic |
| GGAAAGGTTGTTATTATTAT+TGG | 0.150644 | 1_2:-27028433 | None:intergenic |
| ACACAACCTCATCATCTTTC+TGG | 0.154570 | 1_2:+27028591 | Msa0065140:CDS |
| AGAGAGTCTTGGAACAAATT+AGG | 0.197801 | 1_2:-27028201 | None:intergenic |
| TTTGCAAAGAATGATGATTT+TGG | 0.213280 | 1_2:+27030023 | Msa0065140:CDS |
| GCTGATAGTTCTAGCTTATT+TGG | 0.217917 | 1_2:+27028804 | Msa0065140:CDS |
| TTGGATTATCAAGGTGAAAA+TGG | 0.259352 | 1_2:+27028867 | Msa0065140:CDS |
| TCCTCCAAGTGTGAAATTTC+TGG | 0.285986 | 1_2:-27029748 | None:intergenic |
| TTACTTCATCATCATCTTCA+TGG | 0.288489 | 1_2:-27030073 | None:intergenic |
| TTTGGTGGAGGGATTCTATT+AGG | 0.306595 | 1_2:+27028822 | Msa0065140:CDS |
| TGAAATGCAGACACAAGATT+TGG | 0.326244 | 1_2:+27028848 | Msa0065140:CDS |
| TGTTCTTGATGAGTTGTTAT+TGG | 0.326881 | 1_2:-27028549 | None:intergenic |
| TTCTTGTGAATCAAAGATAA+TGG | 0.355504 | 1_2:-27028454 | None:intergenic |
| CATCATCTTTCTGGTTTGAA+AGG | 0.369735 | 1_2:+27028600 | Msa0065140:CDS |
| ATGTTATTGTTGTTTGTGGT+AGG | 0.381216 | 1_2:-27028396 | None:intergenic |
| GAGAGTCTTGGAACAAATTA+GGG | 0.383018 | 1_2:-27028200 | None:intergenic |
| TTGTACAGATTCTGTTCAAC+AGG | 0.388571 | 1_2:+27028899 | Msa0065140:CDS |
| GTTGATGTTATTGTTGTTTG+TGG | 0.394760 | 1_2:-27028400 | None:intergenic |
| GAGGACTCTTCTTTGAAAGT+TGG | 0.400610 | 1_2:+27029766 | Msa0065140:CDS |
| GATAGCCGACCGCGAGTTAG+AGG | 0.402796 | 1_2:+27029996 | Msa0065140:CDS |
| GAGAATCACAAACTAGTATC+TGG | 0.409472 | 1_2:+27029697 | Msa0065140:CDS |
| TCTTGTTCTTATCTTAGTAA+TGG | 0.420390 | 1_2:+27028735 | Msa0065140:CDS |
| TGTTAAAGAAGAAGATGATA+TGG | 0.428400 | 1_2:+27030316 | Msa0065140:CDS |
| TCTTATCTTAGTAATGGCTT+AGG | 0.445374 | 1_2:+27028741 | Msa0065140:CDS |
| ATAGGATCAGTTTGATATTG+TGG | 0.454553 | 1_2:-27028627 | None:intergenic |
| GATAGTTCTAGCTTATTTGG+TGG | 0.459834 | 1_2:+27028807 | Msa0065140:CDS |
| TGGAAGTTGTTCTGCCACTT+TGG | 0.463869 | 1_2:+27029723 | Msa0065140:CDS |
| TCAAACTGATCCTATATCTT+CGG | 0.472302 | 1_2:+27028635 | Msa0065140:CDS |
| ATCATCTTTCTGGTTTGAAA+GGG | 0.478809 | 1_2:+27028601 | Msa0065140:CDS |
| GGCACCAGAAATTTCACACT+TGG | 0.479570 | 1_2:+27029744 | Msa0065140:CDS |
| TCTTCATGGTTGCTACTACC+TGG | 0.484305 | 1_2:-27030059 | None:intergenic |
| AGTTCTAGCTTATTTGGTGG+AGG | 0.485926 | 1_2:+27028810 | Msa0065140:CDS |
| ACCAGAAATTTCACACTTGG+AGG | 0.486593 | 1_2:+27029747 | Msa0065140:CDS |
| AGCGGTGCTGCCGAAGATAT+AGG | 0.487136 | 1_2:-27028645 | None:intergenic |
| ACACAAGATTTGGATTATCA+AGG | 0.487381 | 1_2:+27028858 | Msa0065140:CDS |
| TGTTATTGTTGTTTGTGGTA+GGG | 0.500281 | 1_2:-27028395 | None:intergenic |
| TATATGCCTCATGGAAATCT+TGG | 0.500992 | 1_2:+27028768 | Msa0065140:CDS |
| ATCATACCTGAAAATCTTGA+GGG | 0.501022 | 1_2:-27028929 | None:intergenic |
| GATGGAATAGTTGCATTTGA+AGG | 0.501927 | 1_2:-27030381 | None:intergenic |
| GAACAAGAAGGAGAATAAGA+AGG | 0.504833 | 1_2:-27028720 | None:intergenic |
| CACAAACTAGTATCTGGTGC+TGG | 0.507442 | 1_2:+27029703 | Msa0065140:CDS |
| GAAAACTTTCTGTTGAGCAA+AGG | 0.518365 | 1_2:+27029788 | Msa0065140:CDS |
| GATTATCAAGGTGAAAATGG+TGG | 0.531561 | 1_2:+27028870 | Msa0065140:CDS |
| GATCATACCTGAAAATCTTG+AGG | 0.542555 | 1_2:-27028930 | None:intergenic |
| GTTCTAGCTTATTTGGTGGA+GGG | 0.546863 | 1_2:+27028811 | Msa0065140:CDS |
| TTTGGAGAGAATCATAGGCC+AGG | 0.559627 | 1_2:+27030041 | Msa0065140:CDS |
| CAATCATCTTCAAATACAGA+AGG | 0.562025 | 1_2:-27028684 | None:intergenic |
| AATTCAAATCAATGAGTGGA+TGG | 0.563218 | 1_2:-27030399 | None:intergenic |
| TGAGTTGTTATTGGAAGAAG+CGG | 0.584164 | 1_2:-27028540 | None:intergenic |
| AAATTTCAGCAAGAAAATCA+AGG | 0.584947 | 1_2:+27029852 | Msa0065140:CDS |
| GATATCTTTGCACATATCAG+TGG | 0.587582 | 1_2:+27030350 | Msa0065140:CDS |
| GCCGACCGCGAGTTAGAGGA+AGG | 0.600682 | 1_2:+27030000 | Msa0065140:CDS |
| TTCAAACCAGAAAGATGATG+AGG | 0.600906 | 1_2:-27028597 | None:intergenic |
| AATTAATTCAAATCAATGAG+TGG | 0.607127 | 1_2:-27030403 | None:intergenic |
| TTACTAAGATAAGAACAAGA+AGG | 0.626377 | 1_2:-27028732 | None:intergenic |
| GATAGTTGATCATCATGTGA+TGG | 0.626409 | 1_2:-27026107 | None:intergenic |
| GTGAATCAAAGATAATGGAA+AGG | 0.627025 | 1_2:-27028449 | None:intergenic |
| AATCATCTTCAAATACAGAA+GGG | 0.628034 | 1_2:-27028683 | None:intergenic |
| TGAAATTTCTGGTGCCAAAG+TGG | 0.631400 | 1_2:-27029737 | None:intergenic |
| GCAAACCTTCCTCTAACTCG+CGG | 0.633175 | 1_2:-27030005 | None:intergenic |
| TTAGGTGTGTATATGCCTCA+TGG | 0.638818 | 1_2:+27028759 | Msa0065140:CDS |
| GTGGATAACATCTTGCAACA+TGG | 0.639926 | 1_2:-27026081 | None:intergenic |
| AGTTGATCATCATGTGATGG+AGG | 0.641758 | 1_2:-27026104 | None:intergenic |
| GGGAATGAAGCACTCATAAG+CGG | 0.643710 | 1_2:-27028663 | None:intergenic |
| GTTGTTATTGGAAGAAGCGG+CGG | 0.649290 | 1_2:-27028537 | None:intergenic |
| ACCTTCCTCTAACTCGCGGT+CGG | 0.662592 | 1_2:-27030001 | None:intergenic |
| GATCATCATGTGATGGAGGG+TGG | 0.675915 | 1_2:-27026100 | None:intergenic |
| GTTGATCATCATGTGATGGA+GGG | 0.699079 | 1_2:-27026103 | None:intergenic |
| GATATGTGCAAAGATATCTG+AGG | 0.713563 | 1_2:-27030345 | None:intergenic |
| GCAGTACCAAGATTTCCATG+AGG | 0.759579 | 1_2:-27028774 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GATAAAATATATAATTAACA+AGG | - | chr1_2:27026150-27026169 | None:intergenic | 10.0% |
| !!! | TTATTTTTCTTTTCATTAAA+TGG | - | chr1_2:27026981-27027000 | None:intergenic | 10.0% |
| !!! | TTTAAAATTTAATGTAACTT+AGG | - | chr1_2:27027410-27027429 | None:intergenic | 10.0% |
| !!! | AAAATAATATTTGACATTTT+TGG | - | chr1_2:27029062-27029081 | None:intergenic | 10.0% |
| !!! | ATTAAAAAATACTTTTGATT+TGG | + | chr1_2:27029302-27029321 | Msa0065140:intron | 10.0% |
| !!! | ATAATTGTATTTTCTTTTAT+AGG | + | chr1_2:27029663-27029682 | Msa0065140:intron | 10.0% |
| !!! | TCATTTATATTTTCAAAATT+CGG | + | chr1_2:27029919-27029938 | Msa0065140:intron | 10.0% |
| !!! | TTAATTTGTTTGAAAAGATA+GGG | + | chr1_2:27026272-27026291 | Msa0065140:intron | 15.0% |
| !! | AGTAATTAATACTTATAACT+AGG | - | chr1_2:27026492-27026511 | None:intergenic | 15.0% |
| !! | AAACATATTTATGATAAACT+CGG | + | chr1_2:27027428-27027447 | Msa0065140:intron | 15.0% |
| !! | TGAAATATTTCTCAAATATT+CGG | - | chr1_2:27027506-27027525 | None:intergenic | 15.0% |
| !! | ACAAAGATAATTATGTTAAT+TGG | + | chr1_2:27027792-27027811 | Msa0065140:intron | 15.0% |
| !!! | TTTTTATTATCAACTTAAAG+TGG | - | chr1_2:27029346-27029365 | None:intergenic | 15.0% |
| !!! | ATCGTTTTGTTAAATAAATT+TGG | - | chr1_2:27030109-27030128 | None:intergenic | 15.0% |
| !! | ATATATAATTAACAAGGTTG+AGG | - | chr1_2:27026144-27026163 | None:intergenic | 20.0% |
| !!! | GTTAATTTGTTTGAAAAGAT+AGG | + | chr1_2:27026271-27026290 | Msa0065140:intron | 20.0% |
| !!! | ATCAAAATGTCATTTTCTAA+GGG | + | chr1_2:27026716-27026735 | Msa0065140:intron | 20.0% |
| !! | ATATTCTTTATTCAGTTAGA+TGG | + | chr1_2:27026851-27026870 | Msa0065140:intron | 20.0% |
| !! | TATTCTTTATTCAGTTAGAT+GGG | + | chr1_2:27026852-27026871 | Msa0065140:intron | 20.0% |
| !! | ATGACAAAAAAAGATCATAT+AGG | + | chr1_2:27026896-27026915 | Msa0065140:intron | 20.0% |
| !!! | GTTTTGATGTTATTAACATT+AGG | + | chr1_2:27027041-27027060 | Msa0065140:intron | 20.0% |
| !! | GTTATTAACATTAGGTAATT+TGG | + | chr1_2:27027049-27027068 | Msa0065140:intron | 20.0% |
| !! | TATATGTCTATTACCAATTA+TGG | + | chr1_2:27027162-27027181 | Msa0065140:intron | 20.0% |
| !!! | TACTGAAAAAATTGCATTTT+CGG | + | chr1_2:27027368-27027387 | Msa0065140:intron | 20.0% |
| !! | AACATATTTATGATAAACTC+GGG | + | chr1_2:27027429-27027448 | Msa0065140:intron | 20.0% |
| !! | TCGAGAATAATTTAAGAAAA+TGG | - | chr1_2:27027710-27027729 | None:intergenic | 20.0% |
| !! | GACTTGTATATAAAAACATA+AGG | - | chr1_2:27028021-27028040 | None:intergenic | 20.0% |
| !! | TAAAAACTATTGAACACATA+AGG | - | chr1_2:27028064-27028083 | None:intergenic | 20.0% |
| !!! | ATCTATTTCTTGATGTATAT+TGG | - | chr1_2:27029241-27029260 | None:intergenic | 20.0% |
| !!! | AAATCATCGATTTGAAATAT+CGG | + | chr1_2:27029616-27029635 | Msa0065140:intron | 20.0% |
| !! | TTGTTAAATAAATTTGGCTA+GGG | - | chr1_2:27030103-27030122 | None:intergenic | 20.0% |
| !! | TTTGTTAAATAAATTTGGCT+AGG | - | chr1_2:27030104-27030123 | None:intergenic | 20.0% |
| !!! | TTTCCTTTTCAATTATTTGA+TGG | + | chr1_2:27030245-27030264 | Msa0065140:intron | 20.0% |
| !! | ATACCATCAAATAATTGAAA+AGG | - | chr1_2:27030251-27030270 | None:intergenic | 20.0% |
| ! | AAACAAATTAACTGTTGAGA+AGG | - | chr1_2:27026263-27026282 | None:intergenic | 25.0% |
| ! | AAAATTTAAGAGTAACCCTA+AGG | - | chr1_2:27026306-27026325 | None:intergenic | 25.0% |
| !! | TTAGGGTTACTCTTAAATTT+TGG | + | chr1_2:27026305-27026324 | Msa0065140:intron | 25.0% |
| ! | ACATAAATAACCAACTACTT+TGG | - | chr1_2:27026334-27026353 | None:intergenic | 25.0% |
| ! | AATAGTCCAATAAATTGTGA+GGG | - | chr1_2:27026555-27026574 | None:intergenic | 25.0% |
| ! | TAATAGTCCAATAAATTGTG+AGG | - | chr1_2:27026556-27026575 | None:intergenic | 25.0% |
| ! | TCTTCTTTCCTCTATTTATA+TGG | + | chr1_2:27026578-27026597 | Msa0065140:intron | 25.0% |
| !! | AGCATAATATTTTCTTTGAC+TGG | + | chr1_2:27026607-27026626 | Msa0065140:intron | 25.0% |
| !!! | AAAATGACATTTTGATGGTA+GGG | - | chr1_2:27026712-27026731 | None:intergenic | 25.0% |
| !! | CTTAGAAAATGACATTTTGA+TGG | - | chr1_2:27026717-27026736 | None:intergenic | 25.0% |
| !!! | CATCAAAATGTCATTTTCTA+AGG | + | chr1_2:27026715-27026734 | Msa0065140:intron | 25.0% |
| ! | GAAAAATAACATATAGCATG+AGG | + | chr1_2:27026992-27027011 | Msa0065140:intron | 25.0% |
| !!! | TGCAATTTTTTCAGTAGTAT+CGG | - | chr1_2:27027364-27027383 | None:intergenic | 25.0% |
| ! | AAATGTCTTCATCAATTAGT+AGG | - | chr1_2:27027839-27027858 | None:intergenic | 25.0% |
| ! | CTCTAATCAAATTGAAACTT+TGG | - | chr1_2:27027867-27027886 | None:intergenic | 25.0% |
| ! | TCAAAAATTTGTGCACTAAT+TGG | - | chr1_2:27028171-27028190 | None:intergenic | 25.0% |
| !! | GGAAAGGTTGTTATTATTAT+TGG | - | chr1_2:27028436-27028455 | None:intergenic | 25.0% |
| ! | TTCTTGTGAATCAAAGATAA+TGG | - | chr1_2:27028457-27028476 | None:intergenic | 25.0% |
| ! | AATCATCTTCAAATACAGAA+GGG | - | chr1_2:27028686-27028705 | None:intergenic | 25.0% |
| ! | TTACTAAGATAAGAACAAGA+AGG | - | chr1_2:27028735-27028754 | None:intergenic | 25.0% |
| ! | TCTTGTTCTTATCTTAGTAA+TGG | + | chr1_2:27028735-27028754 | Msa0065140:CDS | 25.0% |
| ! | TGTTATACATTGATACATGT+TGG | + | chr1_2:27029583-27029602 | Msa0065140:intron | 25.0% |
| !! | TATTTTCTTTTATAGGCTCT+TGG | + | chr1_2:27029670-27029689 | Msa0065140:intron | 25.0% |
| ! | AAATTTCAGCAAGAAAATCA+AGG | + | chr1_2:27029852-27029871 | Msa0065140:CDS | 25.0% |
| !! | TTTGCAAAGAATGATGATTT+TGG | + | chr1_2:27030023-27030042 | Msa0065140:CDS | 25.0% |
| ! | TGTTAAAGAAGAAGATGATA+TGG | + | chr1_2:27030316-27030335 | Msa0065140:CDS | 25.0% |
| ! | TGAGGGTATATGTATGTATA+TGG | - | chr1_2:27026538-27026557 | None:intergenic | 30.0% |
| CATATACCCTCACAATTTAT+TGG | + | chr1_2:27026546-27026565 | Msa0065140:intron | 30.0% | |
| CTTTCCTCTATTTATATGGT+TGG | + | chr1_2:27026582-27026601 | Msa0065140:intron | 30.0% | |
| TTGACTGGAAACAAATAAGA+AGG | + | chr1_2:27026622-27026641 | Msa0065140:intron | 30.0% | |
| !! | AAATGACATTTTGATGGTAG+GGG | - | chr1_2:27026711-27026730 | None:intergenic | 30.0% |
| !! | GAAAATGACATTTTGATGGT+AGG | - | chr1_2:27026713-27026732 | None:intergenic | 30.0% |
| CTAAGGGCAAATTAGTAAAA+TGG | + | chr1_2:27026732-27026751 | Msa0065140:intron | 30.0% | |
| ! | TATGTCTAAAATGACTATCG+AGG | - | chr1_2:27026768-27026787 | None:intergenic | 30.0% |
| CAAAGAGATATATATTCCAC+AGG | - | chr1_2:27026801-27026820 | None:intergenic | 30.0% | |
| CTGTGGAATATATATCTCTT+TGG | + | chr1_2:27026799-27026818 | Msa0065140:intron | 30.0% | |
| ATGGAAATTTGTCCTTCAAT+GGG | - | chr1_2:27026962-27026981 | None:intergenic | 30.0% | |
| AATGGAAATTTGTCCTTCAA+TGG | - | chr1_2:27026963-27026982 | None:intergenic | 30.0% | |
| GCATTCTACATATAACTAGT+TGG | - | chr1_2:27027212-27027231 | None:intergenic | 30.0% | |
| ! | TGTTTTCTTCTTGACAATGA+AGG | + | chr1_2:27027262-27027281 | Msa0065140:intron | 30.0% |
| ! | GAAAAAATTGCATTTTCGGA+TGG | + | chr1_2:27027372-27027391 | Msa0065140:intron | 30.0% |
| TATTTATGATAAACTCGGGA+TGG | + | chr1_2:27027433-27027452 | Msa0065140:intron | 30.0% | |
| ! | TGCAATCTGTCTCAATATTT+TGG | - | chr1_2:27027549-27027568 | None:intergenic | 30.0% |
| ATCCATCACAAAGATCAAAA+TGG | + | chr1_2:27027622-27027641 | Msa0065140:intron | 30.0% | |
| ACTCATGTCTATCAACAAAA+AGG | + | chr1_2:27027943-27027962 | Msa0065140:intron | 30.0% | |
| CTCATGTCTATCAACAAAAA+GGG | + | chr1_2:27027944-27027963 | Msa0065140:intron | 30.0% | |
| TCATGTCTATCAACAAAAAG+GGG | + | chr1_2:27027945-27027964 | Msa0065140:intron | 30.0% | |
| ACGTGATTCTCTATTCATTA+TGG | - | chr1_2:27027993-27028012 | None:intergenic | 30.0% | |
| CTATTGAACACATAAGGTTT+AGG | - | chr1_2:27028058-27028077 | None:intergenic | 30.0% | |
| !! | AATTTTGTTGTAGAGAGTCT+TGG | - | chr1_2:27028215-27028234 | None:intergenic | 30.0% |
| ! | AGCTTGAGATATGTTGTTTA+AGG | - | chr1_2:27028298-27028317 | None:intergenic | 30.0% |
| !! | TGTTATTGTTGTTTGTGGTA+GGG | - | chr1_2:27028398-27028417 | None:intergenic | 30.0% |
| !! | ATGTTATTGTTGTTTGTGGT+AGG | - | chr1_2:27028399-27028418 | None:intergenic | 30.0% |
| !! | GTTGATGTTATTGTTGTTTG+TGG | - | chr1_2:27028403-27028422 | None:intergenic | 30.0% |
| !! | GTGAATCAAAGATAATGGAA+AGG | - | chr1_2:27028452-27028471 | None:intergenic | 30.0% |
| TGTTCTTGATGAGTTGTTAT+TGG | - | chr1_2:27028552-27028571 | None:intergenic | 30.0% | |
| !! | ATCATCTTTCTGGTTTGAAA+GGG | + | chr1_2:27028601-27028620 | Msa0065140:CDS | 30.0% |
| ATAGGATCAGTTTGATATTG+TGG | - | chr1_2:27028630-27028649 | None:intergenic | 30.0% | |
| TCAAACTGATCCTATATCTT+CGG | + | chr1_2:27028635-27028654 | Msa0065140:CDS | 30.0% | |
| CAATCATCTTCAAATACAGA+AGG | - | chr1_2:27028687-27028706 | None:intergenic | 30.0% | |
| TCTTATCTTAGTAATGGCTT+AGG | + | chr1_2:27028741-27028760 | Msa0065140:CDS | 30.0% | |
| ACACAAGATTTGGATTATCA+AGG | + | chr1_2:27028858-27028877 | Msa0065140:CDS | 30.0% | |
| TTGGATTATCAAGGTGAAAA+TGG | + | chr1_2:27028867-27028886 | Msa0065140:CDS | 30.0% | |
| ! | TTTTAACCCTCAAGATTTTC+AGG | + | chr1_2:27028923-27028942 | Msa0065140:CDS | 30.0% |
| ATCATACCTGAAAATCTTGA+GGG | - | chr1_2:27028932-27028951 | None:intergenic | 30.0% | |
| ! | CTACCTTGTTAATTTTTCCT+TGG | + | chr1_2:27028971-27028990 | Msa0065140:intron | 30.0% |
| CAACCAAGGAAAAATTAACA+AGG | - | chr1_2:27028977-27028996 | None:intergenic | 30.0% | |
| TCTTCTATAATAAGCAACCA+AGG | - | chr1_2:27028991-27029010 | None:intergenic | 30.0% | |
| !! | CTATATCAGAAGTGTACTTT+TGG | + | chr1_2:27029170-27029189 | Msa0065140:intron | 30.0% |
| ! | AATGCAGCTGACTTTATAAA+AGG | - | chr1_2:27029285-27029304 | None:intergenic | 30.0% |
| GAAAAGACCATCTTTATGAT+AGG | + | chr1_2:27029398-27029417 | Msa0065140:intron | 30.0% | |
| CATTGAACCTATCATAAAGA+TGG | - | chr1_2:27029408-27029427 | None:intergenic | 30.0% | |
| !! | ATGATTTTGGAGAGAATCAT+AGG | + | chr1_2:27030036-27030055 | Msa0065140:CDS | 30.0% |
| TTACTTCATCATCATCTTCA+TGG | - | chr1_2:27030076-27030095 | None:intergenic | 30.0% | |
| ! | TCATTTTACAATTGTTCTCG+AGG | + | chr1_2:27030137-27030156 | Msa0065140:intron | 30.0% |
| AAAAAAGACTGAAAGTGATG+TGG | - | chr1_2:27030225-27030244 | None:intergenic | 30.0% | |
| ATCTGCAAGTACAAAATGAA+AGG | - | chr1_2:27030293-27030312 | None:intergenic | 30.0% | |
| GATAGTTGATCATCATGTGA+TGG | - | chr1_2:27026110-27026129 | None:intergenic | 35.0% | |
| !! | AGATAGGGTTTGTTTTCCTT+AGG | + | chr1_2:27026287-27026306 | Msa0065140:intron | 35.0% |
| !! | GATAGGGTTTGTTTTCCTTA+GGG | + | chr1_2:27026288-27026307 | Msa0065140:intron | 35.0% |
| !! | ATTTTGGTAGCCAAAGTAGT+TGG | + | chr1_2:27026321-27026340 | Msa0065140:intron | 35.0% |
| CTTGCCAACCATATAAATAG+AGG | - | chr1_2:27026589-27026608 | None:intergenic | 35.0% | |
| ATAACAAAGCCTTACTCTCA+CGG | - | chr1_2:27026659-27026678 | None:intergenic | 35.0% | |
| ATCTATGCTTCATGTGTCAT+TGG | - | chr1_2:27027077-27027096 | None:intergenic | 35.0% | |
| AGTCAGTCATTGTCCATAAT+TGG | - | chr1_2:27027178-27027197 | None:intergenic | 35.0% | |
| ATATGTAGAATGCCCCAATA+AGG | + | chr1_2:27027219-27027238 | Msa0065140:intron | 35.0% | |
| !! | CAATATGCAAAGCCTTATTG+GGG | - | chr1_2:27027234-27027253 | None:intergenic | 35.0% |
| !! | GCAATATGCAAAGCCTTATT+GGG | - | chr1_2:27027235-27027254 | None:intergenic | 35.0% |
| ! | AGCAATATGCAAAGCCTTAT+TGG | - | chr1_2:27027236-27027255 | None:intergenic | 35.0% |
| TATTGAGACAGATTGCAGAT+AGG | + | chr1_2:27027552-27027571 | Msa0065140:intron | 35.0% | |
| !! | CTCCATTTTGATCTTTGTGA+TGG | - | chr1_2:27027627-27027646 | None:intergenic | 35.0% |
| TCTTTCTCACTATGAACTAC+CGG | - | chr1_2:27027767-27027786 | None:intergenic | 35.0% | |
| GAGAGTCTTGGAACAAATTA+GGG | - | chr1_2:27028203-27028222 | None:intergenic | 35.0% | |
| AGAGAGTCTTGGAACAAATT+AGG | - | chr1_2:27028204-27028223 | None:intergenic | 35.0% | |
| ! | TGAGTTGTTATTGGAAGAAG+CGG | - | chr1_2:27028543-27028562 | None:intergenic | 35.0% |
| TTCAAACCAGAAAGATGATG+AGG | - | chr1_2:27028600-27028619 | None:intergenic | 35.0% | |
| !! | CATCATCTTTCTGGTTTGAA+AGG | + | chr1_2:27028600-27028619 | Msa0065140:CDS | 35.0% |
| GAACAAGAAGGAGAATAAGA+AGG | - | chr1_2:27028723-27028742 | None:intergenic | 35.0% | |
| TATATGCCTCATGGAAATCT+TGG | + | chr1_2:27028768-27028787 | Msa0065140:CDS | 35.0% | |
| !! | GCTGATAGTTCTAGCTTATT+TGG | + | chr1_2:27028804-27028823 | Msa0065140:CDS | 35.0% |
| !! | GATAGTTCTAGCTTATTTGG+TGG | + | chr1_2:27028807-27028826 | Msa0065140:CDS | 35.0% |
| TGAAATGCAGACACAAGATT+TGG | + | chr1_2:27028848-27028867 | Msa0065140:CDS | 35.0% | |
| GATTATCAAGGTGAAAATGG+TGG | + | chr1_2:27028870-27028889 | Msa0065140:CDS | 35.0% | |
| TTGTACAGATTCTGTTCAAC+AGG | + | chr1_2:27028899-27028918 | Msa0065140:CDS | 35.0% | |
| GATCATACCTGAAAATCTTG+AGG | - | chr1_2:27028933-27028952 | None:intergenic | 35.0% | |
| !! | GTACTTTTGGTTAAAGCTCA+TGG | + | chr1_2:27029183-27029202 | Msa0065140:intron | 35.0% |
| !! | TTTGATTTGGCCTAGTAGAA+TGG | + | chr1_2:27029315-27029334 | Msa0065140:intron | 35.0% |
| AGTGGTTATTCCATTCTACT+AGG | - | chr1_2:27029328-27029347 | None:intergenic | 35.0% | |
| GAGAATCACAAACTAGTATC+TGG | + | chr1_2:27029697-27029716 | Msa0065140:CDS | 35.0% | |
| GAAAACTTTCTGTTGAGCAA+AGG | + | chr1_2:27029788-27029807 | Msa0065140:CDS | 35.0% | |
| TGCTTGTCGAAAAACTTTAG+CGG | + | chr1_2:27029974-27029993 | Msa0065140:CDS | 35.0% | |
| GTTGAACATTTCAGAGTCTA+GGG | - | chr1_2:27030178-27030197 | None:intergenic | 35.0% | |
| AGTTGAACATTTCAGAGTCT+AGG | - | chr1_2:27030179-27030198 | None:intergenic | 35.0% | |
| GATATGTGCAAAGATATCTG+AGG | - | chr1_2:27030348-27030367 | None:intergenic | 35.0% | |
| GATATCTTTGCACATATCAG+TGG | + | chr1_2:27030350-27030369 | Msa0065140:CDS | 35.0% | |
| GATGGAATAGTTGCATTTGA+AGG | - | chr1_2:27030384-27030403 | None:intergenic | 35.0% | |
| ! | GTTGATCATCATGTGATGGA+GGG | - | chr1_2:27026106-27026125 | None:intergenic | 40.0% |
| AGTTGATCATCATGTGATGG+AGG | - | chr1_2:27026107-27026126 | None:intergenic | 40.0% | |
| CAAGGTTGAGGCAATTACAA+TGG | - | chr1_2:27026132-27026151 | None:intergenic | 40.0% | |
| GTTATTATGCATGCATGCGT+TGG | + | chr1_2:27026193-27026212 | Msa0065140:intron | 40.0% | |
| GGGAATGAAAAGCGACTTAA+AGG | - | chr1_2:27026942-27026961 | None:intergenic | 40.0% | |
| !! | TCGCTTTTCATTCCCATTGA+AGG | + | chr1_2:27026947-27026966 | Msa0065140:intron | 40.0% |
| GCTATGTAACATTGACAGCT+AGG | + | chr1_2:27027302-27027321 | Msa0065140:intron | 40.0% | |
| TATCGGACACTAACACGTAT+CGG | - | chr1_2:27027347-27027366 | None:intergenic | 40.0% | |
| ! | CTACGTATCAGTCTTGTGTT+CGG | + | chr1_2:27027733-27027752 | Msa0065140:intron | 40.0% |
| ATGAGTCTGATCTGATCACT+TGG | - | chr1_2:27027929-27027948 | None:intergenic | 40.0% | |
| ! | GTTTTTATGTCACACACTGC+AGG | + | chr1_2:27028131-27028150 | Msa0065140:intron | 40.0% |
| ACACAACCTCATCATCTTTC+TGG | + | chr1_2:27028591-27028610 | Msa0065140:CDS | 40.0% | |
| TTAGGTGTGTATATGCCTCA+TGG | + | chr1_2:27028759-27028778 | Msa0065140:CDS | 40.0% | |
| !! | AGTTCTAGCTTATTTGGTGG+AGG | + | chr1_2:27028810-27028829 | Msa0065140:CDS | 40.0% |
| !! | GTTCTAGCTTATTTGGTGGA+GGG | + | chr1_2:27028811-27028830 | Msa0065140:CDS | 40.0% |
| TTTGGTGGAGGGATTCTATT+AGG | + | chr1_2:27028822-27028841 | Msa0065140:CDS | 40.0% | |
| !! | TGAAATTTCTGGTGCCAAAG+TGG | - | chr1_2:27029740-27029759 | None:intergenic | 40.0% |
| ACCAGAAATTTCACACTTGG+AGG | + | chr1_2:27029747-27029766 | Msa0065140:CDS | 40.0% | |
| TCCTCCAAGTGTGAAATTTC+TGG | - | chr1_2:27029751-27029770 | None:intergenic | 40.0% | |
| ! | GAGGACTCTTCTTTGAAAGT+TGG | + | chr1_2:27029766-27029785 | Msa0065140:CDS | 40.0% |
| TATGCATGCATGCGTTGGAA+TGG | + | chr1_2:27026198-27026217 | Msa0065140:intron | 45.0% | |
| TCAAAGACTCCGTGAGAGTA+AGG | + | chr1_2:27026647-27026666 | Msa0065140:intron | 45.0% | |
| !!! | GTAGGGGCATTTTCTTGAGT+AGG | - | chr1_2:27026695-27026714 | None:intergenic | 45.0% |
| GACATAGCTTTCAGTTCCTG+TGG | + | chr1_2:27026782-27026801 | Msa0065140:intron | 45.0% | |
| ! | GTTGTTATTGGAAGAAGCGG+CGG | - | chr1_2:27028540-27028559 | None:intergenic | 45.0% |
| ! | GGGAATGAAGCACTCATAAG+CGG | - | chr1_2:27028666-27028685 | None:intergenic | 45.0% |
| GCAGTACCAAGATTTCCATG+AGG | - | chr1_2:27028777-27028796 | None:intergenic | 45.0% | |
| CACAAACTAGTATCTGGTGC+TGG | + | chr1_2:27029703-27029722 | Msa0065140:CDS | 45.0% | |
| ! | TGGAAGTTGTTCTGCCACTT+TGG | + | chr1_2:27029723-27029742 | Msa0065140:CDS | 45.0% |
| GGCACCAGAAATTTCACACT+TGG | + | chr1_2:27029744-27029763 | Msa0065140:CDS | 45.0% | |
| TTTGGAGAGAATCATAGGCC+AGG | + | chr1_2:27030041-27030060 | Msa0065140:CDS | 45.0% | |
| TCTTCATGGTTGCTACTACC+TGG | - | chr1_2:27030062-27030081 | None:intergenic | 45.0% | |
| ! | GATCATCATGTGATGGAGGG+TGG | - | chr1_2:27026103-27026122 | None:intergenic | 50.0% |
| !! | CTTGTGTTCGGTGTTTGAGC+CGG | + | chr1_2:27027745-27027764 | Msa0065140:intron | 50.0% |
| GCAAACCTTCCTCTAACTCG+CGG | - | chr1_2:27030008-27030027 | None:intergenic | 50.0% | |
| !! | AGCGGTGCTGCCGAAGATAT+AGG | - | chr1_2:27028648-27028667 | None:intergenic | 55.0% |
| ACCTTCCTCTAACTCGCGGT+CGG | - | chr1_2:27030004-27030023 | None:intergenic | 55.0% | |
| GATAGCCGACCGCGAGTTAG+AGG | + | chr1_2:27029996-27030015 | Msa0065140:CDS | 60.0% | |
| GCCGACCGCGAGTTAGAGGA+AGG | + | chr1_2:27030000-27030019 | Msa0065140:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 27026083 | 27030418 | 27026083 | ID=Msa0065140;Name=Msa0065140 |
| chr1_2 | mRNA | 27026083 | 27030418 | 27026083 | ID=Msa0065140-mRNA-1;Parent=Msa0065140;Name=Msa0065140-mRNA-1;_AED=0.07;_eAED=0.10;_QI=0|0.25|0|0.8|1|1|5|0|419 |
| chr1_2 | exon | 27026083 | 27026133 | 27026083 | ID=Msa0065140-mRNA-1:exon:9486;Parent=Msa0065140-mRNA-1 |
| chr1_2 | exon | 27028153 | 27028944 | 27028153 | ID=Msa0065140-mRNA-1:exon:9487;Parent=Msa0065140-mRNA-1 |
| chr1_2 | exon | 27029685 | 27029873 | 27029685 | ID=Msa0065140-mRNA-1:exon:9488;Parent=Msa0065140-mRNA-1 |
| chr1_2 | exon | 27029972 | 27030091 | 27029972 | ID=Msa0065140-mRNA-1:exon:9489;Parent=Msa0065140-mRNA-1 |
| chr1_2 | exon | 27030311 | 27030418 | 27030311 | ID=Msa0065140-mRNA-1:exon:9490;Parent=Msa0065140-mRNA-1 |
| chr1_2 | CDS | 27026083 | 27026133 | 27026083 | ID=Msa0065140-mRNA-1:cds;Parent=Msa0065140-mRNA-1 |
| chr1_2 | CDS | 27028153 | 27028944 | 27028153 | ID=Msa0065140-mRNA-1:cds;Parent=Msa0065140-mRNA-1 |
| chr1_2 | CDS | 27029685 | 27029873 | 27029685 | ID=Msa0065140-mRNA-1:cds;Parent=Msa0065140-mRNA-1 |
| chr1_2 | CDS | 27029972 | 27030091 | 27029972 | ID=Msa0065140-mRNA-1:cds;Parent=Msa0065140-mRNA-1 |
| chr1_2 | CDS | 27030311 | 27030418 | 27030311 | ID=Msa0065140-mRNA-1:cds;Parent=Msa0065140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
