Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0065340 | XP_003590172.1 | 88.146 | 329 | 33 | 2 | 1 | 327 | 1 | 325 | 0.0 | 583 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0065340 | G7I6N9 | 88.146 | 329 | 33 | 2 | 1 | 327 | 1 | 325 | 0.0 | 583 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0065340 | TF | NAC |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0065340 | MtrunA17_Chr1g0168571 | 88.146 | 329 | 33 | 2 | 1 | 327 | 1 | 325 | 0.0 | 583 |
| Msa0065340 | MtrunA17_Chr1g0174911 | 55.043 | 347 | 110 | 11 | 1 | 326 | 1 | 322 | 2.37e-106 | 313 |
| Msa0065340 | MtrunA17_Chr7g0274971 | 62.694 | 193 | 66 | 3 | 1 | 187 | 1 | 193 | 1.16e-79 | 241 |
| Msa0065340 | MtrunA17_Chr7g0263931 | 32.468 | 154 | 85 | 6 | 13 | 155 | 19 | 164 | 3.63e-15 | 75.1 |
| Msa0065340 | MtrunA17_Chr3g0130101 | 33.136 | 169 | 92 | 11 | 13 | 172 | 15 | 171 | 5.32e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0065340 | AT3G10480.2 | 32.484 | 157 | 90 | 9 | 13 | 161 | 35 | 183 | 1.84e-11 | 65.1 |
Find 68 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATTGTTATGTTGATTATT+TGG | 0.178802 | 1_2:+27408915 | None:intergenic |
| GACGATTTGGTTCTTGTCTT+TGG | 0.244831 | 1_2:+27410311 | None:intergenic |
| TCTGCATAGAACATAATTAT+TGG | 0.253885 | 1_2:+27410093 | None:intergenic |
| TTCATTGATAAGCAATTCTT+TGG | 0.274452 | 1_2:-27410205 | Msa0065340:intron |
| TAAAGAATCCATGGGAGATT+TGG | 0.280332 | 1_2:-27410480 | Msa0065340:CDS |
| CCTCAACTCTTCTTCCAATA+AGG | 0.285996 | 1_2:-27410614 | Msa0065340:CDS |
| GCACTATTGGACTTGGTAGA+TGG | 0.308744 | 1_2:-27410365 | Msa0065340:CDS |
| AAGTCTCAACGTAAGGAAAA+AGG | 0.316342 | 1_2:-27409468 | Msa0065340:CDS |
| CATCTACTTCTTTGCTTGTA+AGG | 0.319920 | 1_2:+27408862 | None:intergenic |
| TAAAACTGATTGGAAATCAT+TGG | 0.339556 | 1_2:+27408741 | None:intergenic |
| CAGAACAATAATGGTTTGTT+GGG | 0.343371 | 1_2:-27408957 | Msa0065340:CDS |
| TATGTTGATTATTTGGATTT+TGG | 0.346197 | 1_2:+27408922 | None:intergenic |
| AATCTCCCATGGATTCTTTA+CGG | 0.346788 | 1_2:+27410483 | None:intergenic |
| GCTCACGTAGTTCGCACTAT+TGG | 0.363367 | 1_2:-27410378 | Msa0065340:intron |
| ACATGTAGCACTTACAGATT+TGG | 0.365447 | 1_2:+27409392 | None:intergenic |
| AGTGGGTGCGATAACCTTAT+TGG | 0.366373 | 1_2:+27410600 | None:intergenic |
| AAAGAATCCATGGGAGATTT+GGG | 0.385069 | 1_2:-27410479 | Msa0065340:CDS |
| GCAGAACAATAATGGTTTGT+TGG | 0.393833 | 1_2:-27408958 | Msa0065340:CDS |
| GTACGGTTTGATTCTTTAGT+TGG | 0.394803 | 1_2:+27409504 | None:intergenic |
| ATATTGTAGCAGAACAATAA+TGG | 0.395561 | 1_2:-27408966 | Msa0065340:intron |
| TTCAAGAATGCTGATATGAT+TGG | 0.399692 | 1_2:+27410522 | None:intergenic |
| ACAGTGATTGCGGCAGGTCC+TGG | 0.410710 | 1_2:+27409995 | None:intergenic |
| CCAAGATTGACCGTAGTTCC+AGG | 0.417136 | 1_2:-27410013 | Msa0065340:CDS |
| AGATGGGAAGGTGAAGATGC+TGG | 0.438944 | 1_2:-27410348 | Msa0065340:CDS |
| CCTGGAACTACGGTCAATCT+TGG | 0.441654 | 1_2:+27410013 | None:intergenic |
| TCAAGGTTGTAAAGAAGTAT+AGG | 0.443641 | 1_2:+27410419 | None:intergenic |
| TAAGTCCTTATAAAACTGAT+TGG | 0.447401 | 1_2:+27408731 | None:intergenic |
| ATTCTTGAATACGATTTGTT+CGG | 0.450763 | 1_2:-27410508 | Msa0065340:CDS |
| TGCGGCAGGTCCTGGAACTA+CGG | 0.466021 | 1_2:+27410003 | None:intergenic |
| AAAAGGAAAATATGTGGAAT+GGG | 0.469749 | 1_2:-27409451 | Msa0065340:CDS |
| CTTACAAGCAAAGAAGTAGA+TGG | 0.471112 | 1_2:-27408861 | Msa0065340:CDS |
| ATCTACTTCTTTGCTTGTAA+GGG | 0.474103 | 1_2:+27408863 | None:intergenic |
| AGTGGCAGATTTCTTCTTCA+AGG | 0.476140 | 1_2:+27410402 | None:intergenic |
| TGGGAGATTTGGGAAGAGTT+CGG | 0.477611 | 1_2:-27410469 | Msa0065340:CDS |
| CTTATTGGAAGAAGAGTTGA+GGG | 0.477892 | 1_2:+27410615 | None:intergenic |
| CACTATTGGACTTGGTAGAT+GGG | 0.484248 | 1_2:-27410364 | Msa0065340:CDS |
| TCAAGAATGCTGATATGATT+GGG | 0.485559 | 1_2:+27410523 | None:intergenic |
| GCAAGATCCATCCACCATCT+TGG | 0.493197 | 1_2:+27410247 | None:intergenic |
| AACTCTTCCCAAATCTCCCA+TGG | 0.530624 | 1_2:+27410472 | None:intergenic |
| GATGGGAAGGTGAAGATGCT+GGG | 0.538585 | 1_2:-27410347 | Msa0065340:CDS |
| TCGGCACCGTAAAGAATCCA+TGG | 0.549583 | 1_2:-27410489 | Msa0065340:CDS |
| AAGAGTGACACTAGCCAAGA+TGG | 0.553722 | 1_2:-27410261 | Msa0065340:CDS |
| AATTGCTTATCAATGAATTG+TGG | 0.559456 | 1_2:+27410211 | None:intergenic |
| CCAAATAATCAACATAACAA+TGG | 0.564212 | 1_2:-27408915 | Msa0065340:CDS |
| TTGTAGAAGTTCATCATCAG+TGG | 0.566028 | 1_2:+27410582 | None:intergenic |
| TAATGCAAAGTCTCAACGTA+AGG | 0.575719 | 1_2:-27409475 | Msa0065340:CDS |
| ACACTAGCCAAGATGGTGGA+TGG | 0.579785 | 1_2:-27410254 | Msa0065340:CDS |
| ATGATGATGCTAGTATGTCT+TGG | 0.583925 | 1_2:-27408830 | Msa0065340:CDS |
| TGCTTATCAATGAATTGTGG+AGG | 0.585480 | 1_2:+27410214 | None:intergenic |
| ACAGGTACAGTGATTGCGGC+AGG | 0.590813 | 1_2:+27409989 | None:intergenic |
| AGAACAATAATGGTTTGTTG+GGG | 0.592459 | 1_2:-27408956 | Msa0065340:CDS |
| CCTTATTGGAAGAAGAGTTG+AGG | 0.596076 | 1_2:+27410614 | None:intergenic |
| GTAGTTCGCACTATTGGACT+TGG | 0.598028 | 1_2:-27410372 | Msa0065340:intron |
| ATTGGACTTGGTAGATGGGA+AGG | 0.599219 | 1_2:-27410360 | Msa0065340:CDS |
| ACTTTGCATTAACAACAGTA+CGG | 0.599369 | 1_2:+27409487 | None:intergenic |
| AGCTGCAACGAAAACAACTC+AGG | 0.602909 | 1_2:+27408807 | None:intergenic |
| ATGCTGATATGATTGGGCAA+AGG | 0.610752 | 1_2:+27410529 | None:intergenic |
| GTGCGAACTACGTGAGCTAG+TGG | 0.611946 | 1_2:+27410384 | None:intergenic |
| TGAAGGATGCTTGATCGAAG+AGG | 0.615586 | 1_2:-27408772 | Msa0065340:CDS |
| TGTAGAAGTTCATCATCAGT+GGG | 0.615614 | 1_2:+27410583 | None:intergenic |
| CAGCTGAGAGAGATGAATGA+AGG | 0.618301 | 1_2:-27408789 | Msa0065340:CDS |
| GGAACTTCCTACTCGTATCG+TGG | 0.641732 | 1_2:-27410448 | Msa0065340:CDS |
| CGGCACCGTAAAGAATCCAT+GGG | 0.644352 | 1_2:-27410488 | Msa0065340:CDS |
| ACTTACAGGTACAGTGATTG+CGG | 0.647655 | 1_2:+27409985 | None:intergenic |
| AAAGACAAGAACCAAATCGT+CGG | 0.658755 | 1_2:-27410309 | Msa0065340:CDS |
| GTAGCACTTACAGATTTGGT+CGG | 0.664478 | 1_2:+27409396 | None:intergenic |
| AGTGACACTAGCCAAGATGG+TGG | 0.671554 | 1_2:-27410258 | Msa0065340:CDS |
| GAACAATAATGGTTTGTTGG+GGG | 0.677487 | 1_2:-27408955 | Msa0065340:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTTTTTTTAACAGAA+AGG | + | chr1_2:27410156-27410175 | None:intergenic | 10.0% |
| !!! | ATTTTTTTTTTTTAACAGAA+AGG | + | chr1_2:27410156-27410175 | None:intergenic | 10.0% |
| !!! | ATAAAATCTAATCTTTTTAC+CGG | + | chr1_2:27409457-27409476 | None:intergenic | 15.0% |
| !!! | ATCATTGAAGTATTTTTTTA+AGG | - | chr1_2:27409718-27409737 | Msa0065340:intron | 15.0% |
| !!! | TCATTGAAGTATTTTTTTAA+GGG | - | chr1_2:27409719-27409738 | Msa0065340:intron | 15.0% |
| !!! | ATAAAATCTAATCTTTTTAC+CGG | + | chr1_2:27409457-27409476 | None:intergenic | 15.0% |
| !!! | ATCATTGAAGTATTTTTTTA+AGG | - | chr1_2:27409718-27409737 | Msa0065340:intron | 15.0% |
| !!! | TCATTGAAGTATTTTTTTAA+GGG | - | chr1_2:27409719-27409738 | Msa0065340:intron | 15.0% |
| !!! | ATATTATGTTATTTACGCTT+TGG | - | chr1_2:27409398-27409417 | Msa0065340:intron | 20.0% |
| !!! | TGTTTTCATCTCAATAAAAT+TGG | + | chr1_2:27410126-27410145 | None:intergenic | 20.0% |
| !!! | CGATCTTAACATTTTATTTT+AGG | - | chr1_2:27410223-27410242 | Msa0065340:CDS | 20.0% |
| !!! | TATGTTGATTATTTGGATTT+TGG | + | chr1_2:27410404-27410423 | None:intergenic | 20.0% |
| !!! | ATATTATGTTATTTACGCTT+TGG | - | chr1_2:27409398-27409417 | Msa0065340:intron | 20.0% |
| !!! | TGTTTTCATCTCAATAAAAT+TGG | + | chr1_2:27410126-27410145 | None:intergenic | 20.0% |
| !!! | CGATCTTAACATTTTATTTT+AGG | - | chr1_2:27410223-27410242 | Msa0065340:CDS | 20.0% |
| !!! | TATGTTGATTATTTGGATTT+TGG | + | chr1_2:27410404-27410423 | None:intergenic | 20.0% |
| !!! | TGTTATGAATTTTGTTGTAG+AGG | + | chr1_2:27408772-27408791 | None:intergenic | 25.0% |
| !! | ATTCTTGAATACGATTTGTT+CGG | - | chr1_2:27408815-27408834 | Msa0065340:CDS | 25.0% |
| ! | AATTGCTTATCAATGAATTG+TGG | + | chr1_2:27409115-27409134 | None:intergenic | 25.0% |
| ! | TTCATTGATAAGCAATTCTT+TGG | - | chr1_2:27409118-27409137 | Msa0065340:intron | 25.0% |
| !!! | TTTTGTATCTTGTTTTTTGC+AGG | - | chr1_2:27409207-27409226 | Msa0065340:intron | 25.0% |
| ! | TCTGCATAGAACATAATTAT+TGG | + | chr1_2:27409233-27409252 | None:intergenic | 25.0% |
| ! | TTATGATATTGTTGTGTTTC+CGG | - | chr1_2:27409435-27409454 | Msa0065340:CDS | 25.0% |
| !!! | AAAAAGTATATCCTTTTGGA+TGG | + | chr1_2:27409498-27409517 | None:intergenic | 25.0% |
| !! | ATCCAAAAGGATATACTTTT+TGG | - | chr1_2:27409497-27409516 | Msa0065340:CDS | 25.0% |
| !!! | AATGTTTTGAATGGATAGAA+TGG | + | chr1_2:27409601-27409620 | None:intergenic | 25.0% |
| ! | ATCCATTCAAAACATTTCTT+TGG | - | chr1_2:27409605-27409624 | Msa0065340:intron | 25.0% |
| !!! | TTCCAAAGAAATGTTTTGAA+TGG | + | chr1_2:27409610-27409629 | None:intergenic | 25.0% |
| ! | GAGTAGCAAATCATTAAAAT+AGG | + | chr1_2:27409681-27409700 | None:intergenic | 25.0% |
| ! | TAAGGAAAAAGGAAAATATG+TGG | - | chr1_2:27409866-27409885 | Msa0065340:intron | 25.0% |
| ! | AAAAAGGAAAATATGTGGAA+TGG | - | chr1_2:27409871-27409890 | Msa0065340:intron | 25.0% |
| ! | AAAAGGAAAATATGTGGAAT+GGG | - | chr1_2:27409872-27409891 | Msa0065340:intron | 25.0% |
| ! | TACAATGATTTAACAATCGA+AGG | - | chr1_2:27410069-27410088 | Msa0065340:CDS | 25.0% |
| ! | CTTGAACATGAAAAAAGTTA+AGG | + | chr1_2:27410183-27410202 | None:intergenic | 25.0% |
| !! | ATGAAAGAGCACAATAATAA+GGG | + | chr1_2:27410333-27410352 | None:intergenic | 25.0% |
| !! | AATGAAAGAGCACAATAATA+AGG | + | chr1_2:27410334-27410353 | None:intergenic | 25.0% |
| ! | ATATTGTAGCAGAACAATAA+TGG | - | chr1_2:27410357-27410376 | Msa0065340:CDS | 25.0% |
| !! | CCATTGTTATGTTGATTATT+TGG | + | chr1_2:27410411-27410430 | None:intergenic | 25.0% |
| ! | CCAAATAATCAACATAACAA+TGG | - | chr1_2:27410408-27410427 | Msa0065340:CDS | 25.0% |
| ! | AAAAACAAGATTGAAGATGA+TGG | - | chr1_2:27410432-27410451 | Msa0065340:CDS | 25.0% |
| ! | TAAAACTGATTGGAAATCAT+TGG | + | chr1_2:27410585-27410604 | None:intergenic | 25.0% |
| !!! | GATTTCCAATCAGTTTTATA+AGG | - | chr1_2:27410587-27410606 | Msa0065340:CDS | 25.0% |
| ! | TAAGTCCTTATAAAACTGAT+TGG | + | chr1_2:27410595-27410614 | None:intergenic | 25.0% |
| !!! | TGTTATGAATTTTGTTGTAG+AGG | + | chr1_2:27408772-27408791 | None:intergenic | 25.0% |
| !! | ATTCTTGAATACGATTTGTT+CGG | - | chr1_2:27408815-27408834 | Msa0065340:CDS | 25.0% |
| ! | AATTGCTTATCAATGAATTG+TGG | + | chr1_2:27409115-27409134 | None:intergenic | 25.0% |
| ! | TTCATTGATAAGCAATTCTT+TGG | - | chr1_2:27409118-27409137 | Msa0065340:intron | 25.0% |
| !!! | TTTTGTATCTTGTTTTTTGC+AGG | - | chr1_2:27409207-27409226 | Msa0065340:intron | 25.0% |
| ! | TCTGCATAGAACATAATTAT+TGG | + | chr1_2:27409233-27409252 | None:intergenic | 25.0% |
| ! | TTATGATATTGTTGTGTTTC+CGG | - | chr1_2:27409435-27409454 | Msa0065340:CDS | 25.0% |
| !!! | AAAAAGTATATCCTTTTGGA+TGG | + | chr1_2:27409498-27409517 | None:intergenic | 25.0% |
| !! | ATCCAAAAGGATATACTTTT+TGG | - | chr1_2:27409497-27409516 | Msa0065340:CDS | 25.0% |
| !!! | AATGTTTTGAATGGATAGAA+TGG | + | chr1_2:27409601-27409620 | None:intergenic | 25.0% |
| ! | ATCCATTCAAAACATTTCTT+TGG | - | chr1_2:27409605-27409624 | Msa0065340:intron | 25.0% |
| !!! | TTCCAAAGAAATGTTTTGAA+TGG | + | chr1_2:27409610-27409629 | None:intergenic | 25.0% |
| ! | GAGTAGCAAATCATTAAAAT+AGG | + | chr1_2:27409681-27409700 | None:intergenic | 25.0% |
| ! | TAAGGAAAAAGGAAAATATG+TGG | - | chr1_2:27409866-27409885 | Msa0065340:intron | 25.0% |
| ! | AAAAAGGAAAATATGTGGAA+TGG | - | chr1_2:27409871-27409890 | Msa0065340:intron | 25.0% |
| ! | AAAAGGAAAATATGTGGAAT+GGG | - | chr1_2:27409872-27409891 | Msa0065340:intron | 25.0% |
| ! | TACAATGATTTAACAATCGA+AGG | - | chr1_2:27410069-27410088 | Msa0065340:CDS | 25.0% |
| ! | CTTGAACATGAAAAAAGTTA+AGG | + | chr1_2:27410183-27410202 | None:intergenic | 25.0% |
| !! | ATGAAAGAGCACAATAATAA+GGG | + | chr1_2:27410333-27410352 | None:intergenic | 25.0% |
| !! | AATGAAAGAGCACAATAATA+AGG | + | chr1_2:27410334-27410353 | None:intergenic | 25.0% |
| ! | ATATTGTAGCAGAACAATAA+TGG | - | chr1_2:27410357-27410376 | Msa0065340:CDS | 25.0% |
| !! | CCATTGTTATGTTGATTATT+TGG | + | chr1_2:27410411-27410430 | None:intergenic | 25.0% |
| ! | CCAAATAATCAACATAACAA+TGG | - | chr1_2:27410408-27410427 | Msa0065340:CDS | 25.0% |
| ! | AAAAACAAGATTGAAGATGA+TGG | - | chr1_2:27410432-27410451 | Msa0065340:CDS | 25.0% |
| ! | TAAAACTGATTGGAAATCAT+TGG | + | chr1_2:27410585-27410604 | None:intergenic | 25.0% |
| !!! | GATTTCCAATCAGTTTTATA+AGG | - | chr1_2:27410587-27410606 | Msa0065340:CDS | 25.0% |
| ! | TAAGTCCTTATAAAACTGAT+TGG | + | chr1_2:27410595-27410614 | None:intergenic | 25.0% |
| TCAAGAATGCTGATATGATT+GGG | + | chr1_2:27408803-27408822 | None:intergenic | 30.0% | |
| TTCAAGAATGCTGATATGAT+TGG | + | chr1_2:27408804-27408823 | None:intergenic | 30.0% | |
| ! | TCAAGGTTGTAAAGAAGTAT+AGG | + | chr1_2:27408907-27408926 | None:intergenic | 30.0% |
| AATCATGCACCAAATAACTA+GGG | + | chr1_2:27409184-27409203 | None:intergenic | 30.0% | |
| AAATCATGCACCAAATAACT+AGG | + | chr1_2:27409185-27409204 | None:intergenic | 30.0% | |
| !! | GCAACAATATTTTTGCTTAC+AGG | + | chr1_2:27409280-27409299 | None:intergenic | 30.0% |
| AAGAACAACAAAATTCTTGC+AGG | + | chr1_2:27409371-27409390 | None:intergenic | 30.0% | |
| AGTACTGTTTAGATAATGTG+CGG | - | chr1_2:27409533-27409552 | Msa0065340:CDS | 30.0% | |
| TGAATGGATAGAATGGATAA+AGG | + | chr1_2:27409594-27409613 | None:intergenic | 30.0% | |
| ! | CTTTTCATTCTGGATTTGTA+GGG | - | chr1_2:27409768-27409787 | Msa0065340:intron | 30.0% |
| ACTTTGCATTAACAACAGTA+CGG | + | chr1_2:27409839-27409858 | None:intergenic | 30.0% | |
| !! | CAGAACAATAATGGTTTGTT+GGG | - | chr1_2:27410366-27410385 | Msa0065340:CDS | 30.0% |
| !! | AGAACAATAATGGTTTGTTG+GGG | - | chr1_2:27410367-27410386 | Msa0065340:CDS | 30.0% |
| ATCTACTTCTTTGCTTGTAA+GGG | + | chr1_2:27410463-27410482 | None:intergenic | 30.0% | |
| ! | GTTTTATAAGGACTTACTGT+CGG | - | chr1_2:27410599-27410618 | Msa0065340:CDS | 30.0% |
| TCAAGAATGCTGATATGATT+GGG | + | chr1_2:27408803-27408822 | None:intergenic | 30.0% | |
| TTCAAGAATGCTGATATGAT+TGG | + | chr1_2:27408804-27408823 | None:intergenic | 30.0% | |
| ! | TCAAGGTTGTAAAGAAGTAT+AGG | + | chr1_2:27408907-27408926 | None:intergenic | 30.0% |
| AATCATGCACCAAATAACTA+GGG | + | chr1_2:27409184-27409203 | None:intergenic | 30.0% | |
| AAATCATGCACCAAATAACT+AGG | + | chr1_2:27409185-27409204 | None:intergenic | 30.0% | |
| !! | GCAACAATATTTTTGCTTAC+AGG | + | chr1_2:27409280-27409299 | None:intergenic | 30.0% |
| AAGAACAACAAAATTCTTGC+AGG | + | chr1_2:27409371-27409390 | None:intergenic | 30.0% | |
| AGTACTGTTTAGATAATGTG+CGG | - | chr1_2:27409533-27409552 | Msa0065340:CDS | 30.0% | |
| TGAATGGATAGAATGGATAA+AGG | + | chr1_2:27409594-27409613 | None:intergenic | 30.0% | |
| ! | CTTTTCATTCTGGATTTGTA+GGG | - | chr1_2:27409768-27409787 | Msa0065340:intron | 30.0% |
| ACTTTGCATTAACAACAGTA+CGG | + | chr1_2:27409839-27409858 | None:intergenic | 30.0% | |
| !! | CAGAACAATAATGGTTTGTT+GGG | - | chr1_2:27410366-27410385 | Msa0065340:CDS | 30.0% |
| !! | AGAACAATAATGGTTTGTTG+GGG | - | chr1_2:27410367-27410386 | Msa0065340:CDS | 30.0% |
| ATCTACTTCTTTGCTTGTAA+GGG | + | chr1_2:27410463-27410482 | None:intergenic | 30.0% | |
| ! | GTTTTATAAGGACTTACTGT+CGG | - | chr1_2:27410599-27410618 | Msa0065340:CDS | 30.0% |
| CTTATTGGAAGAAGAGTTGA+GGG | + | chr1_2:27408711-27408730 | None:intergenic | 35.0% | |
| TGTAGAAGTTCATCATCAGT+GGG | + | chr1_2:27408743-27408762 | None:intergenic | 35.0% | |
| TTGTAGAAGTTCATCATCAG+TGG | + | chr1_2:27408744-27408763 | None:intergenic | 35.0% | |
| AATCTCCCATGGATTCTTTA+CGG | + | chr1_2:27408843-27408862 | None:intergenic | 35.0% | |
| TAAAGAATCCATGGGAGATT+TGG | - | chr1_2:27408843-27408862 | Msa0065340:CDS | 35.0% | |
| AAAGAATCCATGGGAGATTT+GGG | - | chr1_2:27408844-27408863 | Msa0065340:CDS | 35.0% | |
| AAAGACAAGAACCAAATCGT+CGG | - | chr1_2:27409014-27409033 | Msa0065340:intron | 35.0% | |
| TGCTTATCAATGAATTGTGG+AGG | + | chr1_2:27409112-27409131 | None:intergenic | 35.0% | |
| GCTACAGATATTTGAACCTA+GGG | + | chr1_2:27409148-27409167 | None:intergenic | 35.0% | |
| GATTCTTAGCCCTAGTTATT+TGG | - | chr1_2:27409172-27409191 | Msa0065340:intron | 35.0% | |
| AACAAAATTCTTGCAGGTTC+AGG | + | chr1_2:27409365-27409384 | None:intergenic | 35.0% | |
| !! | CGCCAAAAAGTATATCCTTT+TGG | + | chr1_2:27409502-27409521 | None:intergenic | 35.0% |
| ! | AACGTTGTTCCTTTTCATTC+TGG | - | chr1_2:27409758-27409777 | Msa0065340:intron | 35.0% |
| CCTACAAATCCAGAATGAAA+AGG | + | chr1_2:27409770-27409789 | None:intergenic | 35.0% | |
| ! | CCTTTTCATTCTGGATTTGT+AGG | - | chr1_2:27409767-27409786 | Msa0065340:intron | 35.0% |
| GTACGGTTTGATTCTTTAGT+TGG | + | chr1_2:27409822-27409841 | None:intergenic | 35.0% | |
| TAATGCAAAGTCTCAACGTA+AGG | - | chr1_2:27409848-27409867 | Msa0065340:intron | 35.0% | |
| AAGTCTCAACGTAAGGAAAA+AGG | - | chr1_2:27409855-27409874 | Msa0065340:intron | 35.0% | |
| ACATGTAGCACTTACAGATT+TGG | + | chr1_2:27409934-27409953 | None:intergenic | 35.0% | |
| ! | GCAGAACAATAATGGTTTGT+TGG | - | chr1_2:27410365-27410384 | Msa0065340:CDS | 35.0% |
| !! | GAACAATAATGGTTTGTTGG+GGG | - | chr1_2:27410368-27410387 | Msa0065340:CDS | 35.0% |
| CATCTACTTCTTTGCTTGTA+AGG | + | chr1_2:27410464-27410483 | None:intergenic | 35.0% | |
| CTTACAAGCAAAGAAGTAGA+TGG | - | chr1_2:27410462-27410481 | Msa0065340:CDS | 35.0% | |
| ! | ATGATGATGCTAGTATGTCT+TGG | - | chr1_2:27410493-27410512 | Msa0065340:CDS | 35.0% |
| CTTATTGGAAGAAGAGTTGA+GGG | + | chr1_2:27408711-27408730 | None:intergenic | 35.0% | |
| TGTAGAAGTTCATCATCAGT+GGG | + | chr1_2:27408743-27408762 | None:intergenic | 35.0% | |
| TTGTAGAAGTTCATCATCAG+TGG | + | chr1_2:27408744-27408763 | None:intergenic | 35.0% | |
| AATCTCCCATGGATTCTTTA+CGG | + | chr1_2:27408843-27408862 | None:intergenic | 35.0% | |
| TAAAGAATCCATGGGAGATT+TGG | - | chr1_2:27408843-27408862 | Msa0065340:CDS | 35.0% | |
| AAAGAATCCATGGGAGATTT+GGG | - | chr1_2:27408844-27408863 | Msa0065340:CDS | 35.0% | |
| AAAGACAAGAACCAAATCGT+CGG | - | chr1_2:27409014-27409033 | Msa0065340:intron | 35.0% | |
| TGCTTATCAATGAATTGTGG+AGG | + | chr1_2:27409112-27409131 | None:intergenic | 35.0% | |
| GCTACAGATATTTGAACCTA+GGG | + | chr1_2:27409148-27409167 | None:intergenic | 35.0% | |
| GATTCTTAGCCCTAGTTATT+TGG | - | chr1_2:27409172-27409191 | Msa0065340:intron | 35.0% | |
| AACAAAATTCTTGCAGGTTC+AGG | + | chr1_2:27409365-27409384 | None:intergenic | 35.0% | |
| !! | CGCCAAAAAGTATATCCTTT+TGG | + | chr1_2:27409502-27409521 | None:intergenic | 35.0% |
| ! | AACGTTGTTCCTTTTCATTC+TGG | - | chr1_2:27409758-27409777 | Msa0065340:intron | 35.0% |
| CCTACAAATCCAGAATGAAA+AGG | + | chr1_2:27409770-27409789 | None:intergenic | 35.0% | |
| ! | CCTTTTCATTCTGGATTTGT+AGG | - | chr1_2:27409767-27409786 | Msa0065340:intron | 35.0% |
| GTACGGTTTGATTCTTTAGT+TGG | + | chr1_2:27409822-27409841 | None:intergenic | 35.0% | |
| TAATGCAAAGTCTCAACGTA+AGG | - | chr1_2:27409848-27409867 | Msa0065340:intron | 35.0% | |
| AAGTCTCAACGTAAGGAAAA+AGG | - | chr1_2:27409855-27409874 | Msa0065340:intron | 35.0% | |
| ACATGTAGCACTTACAGATT+TGG | + | chr1_2:27409934-27409953 | None:intergenic | 35.0% | |
| ! | GCAGAACAATAATGGTTTGT+TGG | - | chr1_2:27410365-27410384 | Msa0065340:CDS | 35.0% |
| !! | GAACAATAATGGTTTGTTGG+GGG | - | chr1_2:27410368-27410387 | Msa0065340:CDS | 35.0% |
| CATCTACTTCTTTGCTTGTA+AGG | + | chr1_2:27410464-27410483 | None:intergenic | 35.0% | |
| CTTACAAGCAAAGAAGTAGA+TGG | - | chr1_2:27410462-27410481 | Msa0065340:CDS | 35.0% | |
| ! | ATGATGATGCTAGTATGTCT+TGG | - | chr1_2:27410493-27410512 | Msa0065340:CDS | 35.0% |
| CCTTATTGGAAGAAGAGTTG+AGG | + | chr1_2:27408712-27408731 | None:intergenic | 40.0% | |
| CCTCAACTCTTCTTCCAATA+AGG | - | chr1_2:27408709-27408728 | Msa0065340:CDS | 40.0% | |
| ATGCTGATATGATTGGGCAA+AGG | + | chr1_2:27408797-27408816 | None:intergenic | 40.0% | |
| AGTGGCAGATTTCTTCTTCA+AGG | + | chr1_2:27408924-27408943 | None:intergenic | 40.0% | |
| ! | CACTATTGGACTTGGTAGAT+GGG | - | chr1_2:27408959-27408978 | Msa0065340:CDS | 40.0% |
| !! | GACGATTTGGTTCTTGTCTT+TGG | + | chr1_2:27409015-27409034 | None:intergenic | 40.0% |
| !!! | GTTTTTTCATGCCGACGATT+TGG | + | chr1_2:27409028-27409047 | None:intergenic | 40.0% |
| CGCTACAGATATTTGAACCT+AGG | + | chr1_2:27409149-27409168 | None:intergenic | 40.0% | |
| ACTTACAGGTACAGTGATTG+CGG | + | chr1_2:27409341-27409360 | None:intergenic | 40.0% | |
| CTAACTTCTGTCCATCCAAA+AGG | - | chr1_2:27409484-27409503 | Msa0065340:CDS | 40.0% | |
| ! | GTAGCACTTACAGATTTGGT+CGG | + | chr1_2:27409930-27409949 | None:intergenic | 40.0% |
| CCTTATTGGAAGAAGAGTTG+AGG | + | chr1_2:27408712-27408731 | None:intergenic | 40.0% | |
| CCTCAACTCTTCTTCCAATA+AGG | - | chr1_2:27408709-27408728 | Msa0065340:CDS | 40.0% | |
| ATGCTGATATGATTGGGCAA+AGG | + | chr1_2:27408797-27408816 | None:intergenic | 40.0% | |
| AGTGGCAGATTTCTTCTTCA+AGG | + | chr1_2:27408924-27408943 | None:intergenic | 40.0% | |
| ! | CACTATTGGACTTGGTAGAT+GGG | - | chr1_2:27408959-27408978 | Msa0065340:CDS | 40.0% |
| !! | GACGATTTGGTTCTTGTCTT+TGG | + | chr1_2:27409015-27409034 | None:intergenic | 40.0% |
| !!! | GTTTTTTCATGCCGACGATT+TGG | + | chr1_2:27409028-27409047 | None:intergenic | 40.0% |
| CGCTACAGATATTTGAACCT+AGG | + | chr1_2:27409149-27409168 | None:intergenic | 40.0% | |
| ACTTACAGGTACAGTGATTG+CGG | + | chr1_2:27409341-27409360 | None:intergenic | 40.0% | |
| CTAACTTCTGTCCATCCAAA+AGG | - | chr1_2:27409484-27409503 | Msa0065340:CDS | 40.0% | |
| ! | GTAGCACTTACAGATTTGGT+CGG | + | chr1_2:27409930-27409949 | None:intergenic | 40.0% |
| AGTGGGTGCGATAACCTTAT+TGG | + | chr1_2:27408726-27408745 | None:intergenic | 45.0% | |
| AACTCTTCCCAAATCTCCCA+TGG | + | chr1_2:27408854-27408873 | None:intergenic | 45.0% | |
| TGGGAGATTTGGGAAGAGTT+CGG | - | chr1_2:27408854-27408873 | Msa0065340:CDS | 45.0% | |
| ! | GTCTTTTCCACGATACGAGT+AGG | + | chr1_2:27408885-27408904 | None:intergenic | 45.0% |
| GTAGTTCGCACTATTGGACT+TGG | - | chr1_2:27408951-27408970 | Msa0065340:CDS | 45.0% | |
| ! | GCACTATTGGACTTGGTAGA+TGG | - | chr1_2:27408958-27408977 | Msa0065340:CDS | 45.0% |
| ! | ATTGGACTTGGTAGATGGGA+AGG | - | chr1_2:27408963-27408982 | Msa0065340:intron | 45.0% |
| AAGAGTGACACTAGCCAAGA+TGG | - | chr1_2:27409062-27409081 | Msa0065340:intron | 45.0% | |
| GCAATTCTTTGGTAAGCCCT+AGG | - | chr1_2:27409129-27409148 | Msa0065340:intron | 45.0% | |
| TTGCAGGTTCAGGAACTTAC+AGG | + | chr1_2:27409355-27409374 | None:intergenic | 45.0% | |
| ! | TGCGGATTATGAACTGTGCT+AGG | - | chr1_2:27409551-27409570 | Msa0065340:intron | 45.0% |
| ! | GCGGATTATGAACTGTGCTA+GGG | - | chr1_2:27409552-27409571 | Msa0065340:intron | 45.0% |
| AGCTGCAACGAAAACAACTC+AGG | + | chr1_2:27410519-27410538 | None:intergenic | 45.0% | |
| CAGCTGAGAGAGATGAATGA+AGG | - | chr1_2:27410534-27410553 | Msa0065340:CDS | 45.0% | |
| TGAAGGATGCTTGATCGAAG+AGG | - | chr1_2:27410551-27410570 | Msa0065340:CDS | 45.0% | |
| AGTGGGTGCGATAACCTTAT+TGG | + | chr1_2:27408726-27408745 | None:intergenic | 45.0% | |
| AACTCTTCCCAAATCTCCCA+TGG | + | chr1_2:27408854-27408873 | None:intergenic | 45.0% | |
| TGGGAGATTTGGGAAGAGTT+CGG | - | chr1_2:27408854-27408873 | Msa0065340:CDS | 45.0% | |
| ! | GTCTTTTCCACGATACGAGT+AGG | + | chr1_2:27408885-27408904 | None:intergenic | 45.0% |
| GTAGTTCGCACTATTGGACT+TGG | - | chr1_2:27408951-27408970 | Msa0065340:CDS | 45.0% | |
| ! | GCACTATTGGACTTGGTAGA+TGG | - | chr1_2:27408958-27408977 | Msa0065340:CDS | 45.0% |
| ! | ATTGGACTTGGTAGATGGGA+AGG | - | chr1_2:27408963-27408982 | Msa0065340:intron | 45.0% |
| AAGAGTGACACTAGCCAAGA+TGG | - | chr1_2:27409062-27409081 | Msa0065340:intron | 45.0% | |
| GCAATTCTTTGGTAAGCCCT+AGG | - | chr1_2:27409129-27409148 | Msa0065340:intron | 45.0% | |
| TTGCAGGTTCAGGAACTTAC+AGG | + | chr1_2:27409355-27409374 | None:intergenic | 45.0% | |
| ! | TGCGGATTATGAACTGTGCT+AGG | - | chr1_2:27409551-27409570 | Msa0065340:intron | 45.0% |
| ! | GCGGATTATGAACTGTGCTA+GGG | - | chr1_2:27409552-27409571 | Msa0065340:intron | 45.0% |
| AGCTGCAACGAAAACAACTC+AGG | + | chr1_2:27410519-27410538 | None:intergenic | 45.0% | |
| CAGCTGAGAGAGATGAATGA+AGG | - | chr1_2:27410534-27410553 | Msa0065340:CDS | 45.0% | |
| TGAAGGATGCTTGATCGAAG+AGG | - | chr1_2:27410551-27410570 | Msa0065340:CDS | 45.0% | |
| TCGGCACCGTAAAGAATCCA+TGG | - | chr1_2:27408834-27408853 | Msa0065340:CDS | 50.0% | |
| CGGCACCGTAAAGAATCCAT+GGG | - | chr1_2:27408835-27408854 | Msa0065340:CDS | 50.0% | |
| GGAACTTCCTACTCGTATCG+TGG | - | chr1_2:27408875-27408894 | Msa0065340:CDS | 50.0% | |
| GCTCACGTAGTTCGCACTAT+TGG | - | chr1_2:27408945-27408964 | Msa0065340:CDS | 50.0% | |
| AGATGGGAAGGTGAAGATGC+TGG | - | chr1_2:27408975-27408994 | Msa0065340:intron | 50.0% | |
| GATGGGAAGGTGAAGATGCT+GGG | - | chr1_2:27408976-27408995 | Msa0065340:intron | 50.0% | |
| AGTGACACTAGCCAAGATGG+TGG | - | chr1_2:27409065-27409084 | Msa0065340:intron | 50.0% | |
| !! | ACACTAGCCAAGATGGTGGA+TGG | - | chr1_2:27409069-27409088 | Msa0065340:intron | 50.0% |
| GCAAGATCCATCCACCATCT+TGG | + | chr1_2:27409079-27409098 | None:intergenic | 50.0% | |
| CCTGGAACTACGGTCAATCT+TGG | + | chr1_2:27409313-27409332 | None:intergenic | 50.0% | |
| CCAAGATTGACCGTAGTTCC+AGG | - | chr1_2:27409310-27409329 | Msa0065340:intron | 50.0% | |
| TCGGCACCGTAAAGAATCCA+TGG | - | chr1_2:27408834-27408853 | Msa0065340:CDS | 50.0% | |
| CGGCACCGTAAAGAATCCAT+GGG | - | chr1_2:27408835-27408854 | Msa0065340:CDS | 50.0% | |
| GGAACTTCCTACTCGTATCG+TGG | - | chr1_2:27408875-27408894 | Msa0065340:CDS | 50.0% | |
| GCTCACGTAGTTCGCACTAT+TGG | - | chr1_2:27408945-27408964 | Msa0065340:CDS | 50.0% | |
| AGATGGGAAGGTGAAGATGC+TGG | - | chr1_2:27408975-27408994 | Msa0065340:intron | 50.0% | |
| GATGGGAAGGTGAAGATGCT+GGG | - | chr1_2:27408976-27408995 | Msa0065340:intron | 50.0% | |
| AGTGACACTAGCCAAGATGG+TGG | - | chr1_2:27409065-27409084 | Msa0065340:intron | 50.0% | |
| !! | ACACTAGCCAAGATGGTGGA+TGG | - | chr1_2:27409069-27409088 | Msa0065340:intron | 50.0% |
| GCAAGATCCATCCACCATCT+TGG | + | chr1_2:27409079-27409098 | None:intergenic | 50.0% | |
| CCTGGAACTACGGTCAATCT+TGG | + | chr1_2:27409313-27409332 | None:intergenic | 50.0% | |
| CCAAGATTGACCGTAGTTCC+AGG | - | chr1_2:27409310-27409329 | Msa0065340:intron | 50.0% | |
| GTGCGAACTACGTGAGCTAG+TGG | + | chr1_2:27408942-27408961 | None:intergenic | 55.0% | |
| ACAGGTACAGTGATTGCGGC+AGG | + | chr1_2:27409337-27409356 | None:intergenic | 55.0% | |
| GTGCGAACTACGTGAGCTAG+TGG | + | chr1_2:27408942-27408961 | None:intergenic | 55.0% | |
| ACAGGTACAGTGATTGCGGC+AGG | + | chr1_2:27409337-27409356 | None:intergenic | 55.0% | |
| TGCGGCAGGTCCTGGAACTA+CGG | + | chr1_2:27409323-27409342 | None:intergenic | 60.0% | |
| ACAGTGATTGCGGCAGGTCC+TGG | + | chr1_2:27409331-27409350 | None:intergenic | 60.0% | |
| TGCGGCAGGTCCTGGAACTA+CGG | + | chr1_2:27409323-27409342 | None:intergenic | 60.0% | |
| ACAGTGATTGCGGCAGGTCC+TGG | + | chr1_2:27409331-27409350 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 27408704 | 27410641 | 27408704 | ID=Msa0065340;Name=Msa0065340 |
| chr1_2 | mRNA | 27408704 | 27410641 | 27408704 | ID=Msa0065340-mRNA-1;Parent=Msa0065340;Name=Msa0065340-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|0.75|0.6|5|0|327 |
| chr1_2 | exon | 27410395 | 27410641 | 27410395 | ID=Msa0065340-mRNA-1:exon:9555;Parent=Msa0065340-mRNA-1 |
| chr1_2 | exon | 27410206 | 27410390 | 27410206 | ID=Msa0065340-mRNA-1:exon:9554;Parent=Msa0065340-mRNA-1 |
| chr1_2 | exon | 27409991 | 27410116 | 27409991 | ID=Msa0065340-mRNA-1:exon:9553;Parent=Msa0065340-mRNA-1 |
| chr1_2 | exon | 27409407 | 27409556 | 27409407 | ID=Msa0065340-mRNA-1:exon:9552;Parent=Msa0065340-mRNA-1 |
| chr1_2 | exon | 27408704 | 27408979 | 27408704 | ID=Msa0065340-mRNA-1:exon:9551;Parent=Msa0065340-mRNA-1 |
| chr1_2 | CDS | 27410395 | 27410641 | 27410395 | ID=Msa0065340-mRNA-1:cds;Parent=Msa0065340-mRNA-1 |
| chr1_2 | CDS | 27410206 | 27410390 | 27410206 | ID=Msa0065340-mRNA-1:cds;Parent=Msa0065340-mRNA-1 |
| chr1_2 | CDS | 27409991 | 27410116 | 27409991 | ID=Msa0065340-mRNA-1:cds;Parent=Msa0065340-mRNA-1 |
| chr1_2 | CDS | 27409407 | 27409556 | 27409407 | ID=Msa0065340-mRNA-1:cds;Parent=Msa0065340-mRNA-1 |
| chr1_2 | CDS | 27408704 | 27408979 | 27408704 | ID=Msa0065340-mRNA-1:cds;Parent=Msa0065340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
