Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0065360 | XP_003590172.1 | 76.923 | 325 | 31 | 2 | 1 | 281 | 1 | 325 | 5.83e-171 | 486 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0065360 | G7I6N9 | 76.923 | 325 | 31 | 2 | 1 | 281 | 1 | 325 | 2.79e-171 | 486 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0065360 | TF | NAC |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0065360 | MtrunA17_Chr1g0168571 | 76.923 | 325 | 31 | 2 | 1 | 281 | 1 | 325 | 5.36e-175 | 486 |
| Msa0065360 | MtrunA17_Chr1g0174911 | 47.989 | 348 | 87 | 11 | 1 | 280 | 1 | 322 | 1.39e-85 | 259 |
| Msa0065360 | MtrunA17_Chr7g0274971 | 44.103 | 195 | 59 | 2 | 1 | 145 | 1 | 195 | 3.64e-46 | 154 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 53 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCAACTCTTCTTCCAATA+AGG | 0.285996 | 1_2:-27427026 | Msa0065360:CDS |
| TGTGAGTGTGATAACCTTAT+TGG | 0.289439 | 1_2:+27427012 | None:intergenic |
| TAAGTTGATTACTTGGATTT+TGG | 0.305325 | 1_2:+27425355 | None:intergenic |
| CCAGGAACGATTGTCATTCT+TGG | 0.309932 | 1_2:+27426306 | None:intergenic |
| GCACCATTGGACTTGGTAGA+TGG | 0.313523 | 1_2:-27426675 | Msa0065360:CDS |
| GCAAGAACAAAGTTCTCTTT+TGG | 0.336878 | 1_2:+27425746 | None:intergenic |
| TAAAACTGATTGGAAATCAT+TGG | 0.339556 | 1_2:+27425204 | None:intergenic |
| GACTACAATAATGTTTGGTT+GGG | 0.342197 | 1_2:-27425390 | Msa0065360:CDS |
| CCATTGTTAAGTTGATTACT+TGG | 0.345697 | 1_2:+27425348 | None:intergenic |
| TCTGCATAGAACATAATTCT+TGG | 0.358009 | 1_2:+27426386 | None:intergenic |
| ATATGTAGCACTTACAGATT+TGG | 0.368326 | 1_2:+27425709 | None:intergenic |
| TATAGGACTACAATAATGTT+TGG | 0.382434 | 1_2:-27425395 | Msa0065360:intron |
| TTCTTTGATAAGCAATCCTT+TGG | 0.396079 | 1_2:-27426515 | Msa0065360:intron |
| TTCAAGAATGGTGATATGAT+TGG | 0.399692 | 1_2:+27426934 | None:intergenic |
| CCAAGAATGACAATCGTTCC+TGG | 0.400269 | 1_2:-27426306 | Msa0065360:CDS |
| GGACTACAATAATGTTTGGT+TGG | 0.420071 | 1_2:-27425391 | Msa0065360:CDS |
| GCAAGATCCATCCACCATCT+TGG | 0.430936 | 1_2:+27426557 | None:intergenic |
| CAAGATCCATCCACCATCTT+GGG | 0.431083 | 1_2:+27426558 | None:intergenic |
| TAAGTCCTTATAAAACTGAT+TGG | 0.443750 | 1_2:+27425194 | None:intergenic |
| ACAGTGATTGCGGCAGGTCC+AGG | 0.448826 | 1_2:+27426288 | None:intergenic |
| TCAAGAATGGTGATATGATT+GGG | 0.471621 | 1_2:+27426935 | None:intergenic |
| CTTATTGGAAGAAGAGTTGA+GGG | 0.477892 | 1_2:+27427027 | None:intergenic |
| CACCATTGGACTTGGTAGAT+GGG | 0.503218 | 1_2:-27426674 | Msa0065360:CDS |
| ACTACAATAATGTTTGGTTG+GGG | 0.523497 | 1_2:-27425389 | Msa0065360:CDS |
| GAACAAATCGTATTCAAGAA+TGG | 0.535727 | 1_2:+27426922 | None:intergenic |
| TGAGACTTTGTATTAACCAC+AGG | 0.541279 | 1_2:+27425800 | None:intergenic |
| TGTAGCACTTACAGATTTGG+TGG | 0.543882 | 1_2:+27425712 | None:intergenic |
| GATTGCTTATCAAAGAATTG+TGG | 0.559456 | 1_2:+27426521 | None:intergenic |
| AAGAGTGACACTTCCCAAGA+TGG | 0.562341 | 1_2:-27426571 | Msa0065360:CDS |
| TCACGCGTAGTTCGCACCAT+TGG | 0.566536 | 1_2:-27426688 | Msa0065360:CDS |
| GTAGTTCGCACCATTGGACT+TGG | 0.568055 | 1_2:-27426682 | Msa0065360:CDS |
| TAATACAAAGTCTCAACGTA+AGG | 0.571382 | 1_2:-27425792 | Msa0065360:CDS |
| ACACTTCCCAAGATGGTGGA+TGG | 0.575047 | 1_2:-27426564 | Msa0065360:CDS |
| TGCTTATCAAAGAATTGTGG+AGG | 0.589131 | 1_2:+27426524 | None:intergenic |
| ACAAGTACAGTGATTGCGGC+AGG | 0.590813 | 1_2:+27426282 | None:intergenic |
| ATGATGGTGCTAGTATGTCT+TGG | 0.591266 | 1_2:-27425293 | Msa0065360:CDS |
| CCTTATTGGAAGAAGAGTTG+AGG | 0.596076 | 1_2:+27427026 | None:intergenic |
| CCAAGTAATCAACTTAACAA+TGG | 0.597996 | 1_2:-27425348 | Msa0065360:CDS |
| ATTGGACTTGGTAGATGGGA+AGG | 0.601702 | 1_2:-27426670 | Msa0065360:CDS |
| AGCTGCAACGAAAACAACTC+AGG | 0.602909 | 1_2:+27425270 | None:intergenic |
| AAAGACAAGAACCAAATCCT+CGG | 0.605189 | 1_2:-27426619 | Msa0065360:CDS |
| TTCCCATCTACCAAGTCCAA+TGG | 0.611326 | 1_2:+27426672 | None:intergenic |
| TGAAGGATGCTTGATCGAAG+AGG | 0.615586 | 1_2:-27425235 | Msa0065360:CDS |
| CAGCTGAGAGAGATGAATGA+AGG | 0.618301 | 1_2:-27425252 | Msa0065360:CDS |
| AGATGGGAAGGTGAAGACGC+TGG | 0.631377 | 1_2:-27426658 | Msa0065360:CDS |
| AGTGACACTTCCCAAGATGG+TGG | 0.639769 | 1_2:-27426568 | Msa0065360:CDS |
| GTAGCACTTACAGATTTGGT+GGG | 0.644008 | 1_2:+27425713 | None:intergenic |
| ACTTACAAGTACAGTGATTG+CGG | 0.645359 | 1_2:+27426278 | None:intergenic |
| GTAGATGGCGATGAAGATGA+TGG | 0.650605 | 1_2:-27425309 | Msa0065360:CDS |
| ATGGTGATATGATTGGGCAA+AGG | 0.653192 | 1_2:+27426941 | None:intergenic |
| CTACAATAATGTTTGGTTGG+GGG | 0.668738 | 1_2:-27425388 | Msa0065360:CDS |
| AAAAGAATCAAACTGTCCTG+TGG | 0.676178 | 1_2:-27425816 | Msa0065360:CDS |
| AAGTGTCACTCTTCTCAAAG+CGG | 0.691065 | 1_2:+27426581 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATACAATATAGATTTTTTCT+TGG | - | chr1_2:27425751-27425770 | Msa0065360:CDS | 15.0% |
| !!! | TACAATATAGATTTTTTCTT+GGG | - | chr1_2:27425752-27425771 | Msa0065360:CDS | 15.0% |
| !!! | ATAAAATCTAATCTTTTTAC+TGG | + | chr1_2:27426009-27426028 | None:intergenic | 15.0% |
| !! | AATATTTCAAGAAGATAAAA+AGG | + | chr1_2:27426089-27426108 | None:intergenic | 15.0% |
| !!! | ATACAATATAGATTTTTTCT+TGG | - | chr1_2:27425751-27425770 | Msa0065360:CDS | 15.0% |
| !!! | TACAATATAGATTTTTTCTT+GGG | - | chr1_2:27425752-27425771 | Msa0065360:CDS | 15.0% |
| !!! | ATAAAATCTAATCTTTTTAC+TGG | + | chr1_2:27426009-27426028 | None:intergenic | 15.0% |
| !! | AATATTTCAAGAAGATAAAA+AGG | + | chr1_2:27426089-27426108 | None:intergenic | 15.0% |
| !!! | TGTTATGAATTTTGTTGTAA+AGG | + | chr1_2:27425235-27425254 | None:intergenic | 20.0% |
| !! | GTATATTTGCAAAAAAACTA+GGG | + | chr1_2:27425735-27425754 | None:intergenic | 20.0% |
| !! | TGTATATTTGCAAAAAAACT+AGG | + | chr1_2:27425736-27425755 | None:intergenic | 20.0% |
| !!! | TTATGATTTGATTTTGTATC+TGG | - | chr1_2:27425778-27425797 | Msa0065360:CDS | 20.0% |
| !!! | TTTGATGCAAATTATTTCTT+TGG | - | chr1_2:27426163-27426182 | Msa0065360:intron | 20.0% |
| !! | GAGTAGTAAATCATTAAAAT+AGG | + | chr1_2:27426239-27426258 | None:intergenic | 20.0% |
| !!! | TAACATTGTTCTTTTTCATT+TGG | - | chr1_2:27426316-27426335 | Msa0065360:CDS | 20.0% |
| !! | TAAGGAAAAAGAAAAATATG+TGG | - | chr1_2:27426424-27426443 | Msa0065360:intron | 20.0% |
| !! | AAAAAGAAAAATATGTGGAA+TGG | - | chr1_2:27426429-27426448 | Msa0065360:intron | 20.0% |
| !!! | TGTTATGAATTTTGTTGTAA+AGG | + | chr1_2:27425235-27425254 | None:intergenic | 20.0% |
| !! | GTATATTTGCAAAAAAACTA+GGG | + | chr1_2:27425735-27425754 | None:intergenic | 20.0% |
| !! | TGTATATTTGCAAAAAAACT+AGG | + | chr1_2:27425736-27425755 | None:intergenic | 20.0% |
| !!! | TTATGATTTGATTTTGTATC+TGG | - | chr1_2:27425778-27425797 | Msa0065360:CDS | 20.0% |
| !!! | TTTGATGCAAATTATTTCTT+TGG | - | chr1_2:27426163-27426182 | Msa0065360:intron | 20.0% |
| !! | GAGTAGTAAATCATTAAAAT+AGG | + | chr1_2:27426239-27426258 | None:intergenic | 20.0% |
| !!! | TAACATTGTTCTTTTTCATT+TGG | - | chr1_2:27426316-27426335 | Msa0065360:CDS | 20.0% |
| !! | TAAGGAAAAAGAAAAATATG+TGG | - | chr1_2:27426424-27426443 | Msa0065360:intron | 20.0% |
| !! | AAAAAGAAAAATATGTGGAA+TGG | - | chr1_2:27426429-27426448 | Msa0065360:intron | 20.0% |
| !! | ATTCTTGAATACGATTTGTT+CGG | - | chr1_2:27425278-27425297 | Msa0065360:CDS | 25.0% |
| !! | TTAAGGTTGTAAAGAAGTAT+AGG | + | chr1_2:27425470-27425489 | None:intergenic | 25.0% |
| ! | AATCACATGCTTAATTGATT+AGG | + | chr1_2:27426124-27426143 | None:intergenic | 25.0% |
| !!! | TCTTTTTCATTTGGATTTGT+AGG | - | chr1_2:27426325-27426344 | Msa0065360:CDS | 25.0% |
| !!! | CTTTTTCATTTGGATTTGTA+GGG | - | chr1_2:27426326-27426345 | Msa0065360:CDS | 25.0% |
| !! | AATGAAAGAGCACAATAATA+AGG | + | chr1_2:27426776-27426795 | None:intergenic | 25.0% |
| ! | CTCTTTCATTCTCATATTAT+AGG | - | chr1_2:27426786-27426805 | Msa0065360:intron | 25.0% |
| ! | TATAGGACTACAATAATGTT+TGG | - | chr1_2:27426803-27426822 | Msa0065360:intron | 25.0% |
| !!! | TAAGTTGATTACTTGGATTT+TGG | + | chr1_2:27426846-27426865 | None:intergenic | 25.0% |
| ! | AAAAACAAGATTGAAGTAGA+TGG | - | chr1_2:27426874-27426893 | Msa0065360:intron | 25.0% |
| ! | TAAAACTGATTGGAAATCAT+TGG | + | chr1_2:27426997-27427016 | None:intergenic | 25.0% |
| !!! | GATTTCCAATCAGTTTTATA+AGG | - | chr1_2:27426999-27427018 | Msa0065360:CDS | 25.0% |
| ! | TAAGTCCTTATAAAACTGAT+TGG | + | chr1_2:27427007-27427026 | None:intergenic | 25.0% |
| !! | GTTTTATAAGGACTTATTGT+TGG | - | chr1_2:27427011-27427030 | Msa0065360:CDS | 25.0% |
| !! | ATTCTTGAATACGATTTGTT+CGG | - | chr1_2:27425278-27425297 | Msa0065360:CDS | 25.0% |
| !! | TTAAGGTTGTAAAGAAGTAT+AGG | + | chr1_2:27425470-27425489 | None:intergenic | 25.0% |
| ! | AATCACATGCTTAATTGATT+AGG | + | chr1_2:27426124-27426143 | None:intergenic | 25.0% |
| !!! | TCTTTTTCATTTGGATTTGT+AGG | - | chr1_2:27426325-27426344 | Msa0065360:CDS | 25.0% |
| !!! | CTTTTTCATTTGGATTTGTA+GGG | - | chr1_2:27426326-27426345 | Msa0065360:CDS | 25.0% |
| !! | AATGAAAGAGCACAATAATA+AGG | + | chr1_2:27426776-27426795 | None:intergenic | 25.0% |
| ! | CTCTTTCATTCTCATATTAT+AGG | - | chr1_2:27426786-27426805 | Msa0065360:intron | 25.0% |
| ! | TATAGGACTACAATAATGTT+TGG | - | chr1_2:27426803-27426822 | Msa0065360:intron | 25.0% |
| !!! | TAAGTTGATTACTTGGATTT+TGG | + | chr1_2:27426846-27426865 | None:intergenic | 25.0% |
| ! | AAAAACAAGATTGAAGTAGA+TGG | - | chr1_2:27426874-27426893 | Msa0065360:intron | 25.0% |
| ! | TAAAACTGATTGGAAATCAT+TGG | + | chr1_2:27426997-27427016 | None:intergenic | 25.0% |
| !!! | GATTTCCAATCAGTTTTATA+AGG | - | chr1_2:27426999-27427018 | Msa0065360:CDS | 25.0% |
| ! | TAAGTCCTTATAAAACTGAT+TGG | + | chr1_2:27427007-27427026 | None:intergenic | 25.0% |
| !! | GTTTTATAAGGACTTATTGT+TGG | - | chr1_2:27427011-27427030 | Msa0065360:CDS | 25.0% |
| TCAAGAATGGTGATATGATT+GGG | + | chr1_2:27425266-27425285 | None:intergenic | 30.0% | |
| TTCAAGAATGGTGATATGAT+TGG | + | chr1_2:27425267-27425286 | None:intergenic | 30.0% | |
| GAACAAATCGTATTCAAGAA+TGG | + | chr1_2:27425279-27425298 | None:intergenic | 30.0% | |
| GATTGCTTATCAAAGAATTG+TGG | + | chr1_2:27425680-27425699 | None:intergenic | 30.0% | |
| TTCTTTGATAAGCAATCCTT+TGG | - | chr1_2:27425683-27425702 | Msa0065360:intron | 30.0% | |
| TCTGCATAGAACATAATTCT+TGG | + | chr1_2:27425815-27425834 | None:intergenic | 30.0% | |
| !! | GCAACAATATTTTTGCTTAC+AGG | + | chr1_2:27425862-27425881 | None:intergenic | 30.0% |
| TAATACAAAGTCTCAACGTA+AGG | - | chr1_2:27426406-27426425 | Msa0065360:intron | 30.0% | |
| ATATGTAGCACTTACAGATT+TGG | + | chr1_2:27426492-27426511 | None:intergenic | 30.0% | |
| GACTACAATAATGTTTGGTT+GGG | - | chr1_2:27426808-27426827 | Msa0065360:intron | 30.0% | |
| ACTACAATAATGTTTGGTTG+GGG | - | chr1_2:27426809-27426828 | Msa0065360:intron | 30.0% | |
| !! | CCATTGTTAAGTTGATTACT+TGG | + | chr1_2:27426853-27426872 | None:intergenic | 30.0% |
| CCAAGTAATCAACTTAACAA+TGG | - | chr1_2:27426850-27426869 | Msa0065360:intron | 30.0% | |
| TCAAGAATGGTGATATGATT+GGG | + | chr1_2:27425266-27425285 | None:intergenic | 30.0% | |
| TTCAAGAATGGTGATATGAT+TGG | + | chr1_2:27425267-27425286 | None:intergenic | 30.0% | |
| GAACAAATCGTATTCAAGAA+TGG | + | chr1_2:27425279-27425298 | None:intergenic | 30.0% | |
| GATTGCTTATCAAAGAATTG+TGG | + | chr1_2:27425680-27425699 | None:intergenic | 30.0% | |
| TTCTTTGATAAGCAATCCTT+TGG | - | chr1_2:27425683-27425702 | Msa0065360:intron | 30.0% | |
| TCTGCATAGAACATAATTCT+TGG | + | chr1_2:27425815-27425834 | None:intergenic | 30.0% | |
| !! | GCAACAATATTTTTGCTTAC+AGG | + | chr1_2:27425862-27425881 | None:intergenic | 30.0% |
| TAATACAAAGTCTCAACGTA+AGG | - | chr1_2:27426406-27426425 | Msa0065360:intron | 30.0% | |
| ATATGTAGCACTTACAGATT+TGG | + | chr1_2:27426492-27426511 | None:intergenic | 30.0% | |
| GACTACAATAATGTTTGGTT+GGG | - | chr1_2:27426808-27426827 | Msa0065360:intron | 30.0% | |
| ACTACAATAATGTTTGGTTG+GGG | - | chr1_2:27426809-27426828 | Msa0065360:intron | 30.0% | |
| !! | CCATTGTTAAGTTGATTACT+TGG | + | chr1_2:27426853-27426872 | None:intergenic | 30.0% |
| CCAAGTAATCAACTTAACAA+TGG | - | chr1_2:27426850-27426869 | Msa0065360:intron | 30.0% | |
| CTTATTGGAAGAAGAGTTGA+GGG | + | chr1_2:27425174-27425193 | None:intergenic | 35.0% | |
| TGTGAGTGTGATAACCTTAT+TGG | + | chr1_2:27425189-27425208 | None:intergenic | 35.0% | |
| AGTGGCAGATTTCTTCTTTA+AGG | + | chr1_2:27425487-27425506 | None:intergenic | 35.0% | |
| AAAGACAAGAACCAAATCCT+CGG | - | chr1_2:27425579-27425598 | Msa0065360:intron | 35.0% | |
| TGCTTATCAAAGAATTGTGG+AGG | + | chr1_2:27425677-27425696 | None:intergenic | 35.0% | |
| AAAACTAGGGCTACAAATCT+TGG | + | chr1_2:27425722-27425741 | None:intergenic | 35.0% | |
| !! | TTTTGTATCTGGTTTCTTGC+AGG | - | chr1_2:27425789-27425808 | Msa0065360:CDS | 35.0% |
| ACTTACAAGTACAGTGATTG+CGG | + | chr1_2:27425923-27425942 | None:intergenic | 35.0% | |
| ! | ACCCTAAACACAGTGTTTTA+CGG | + | chr1_2:27426051-27426070 | None:intergenic | 35.0% |
| ! | GGACAGTTTGATTCTTTTGT+TGG | + | chr1_2:27426380-27426399 | None:intergenic | 35.0% |
| AAAAGAATCAAACTGTCCTG+TGG | - | chr1_2:27426382-27426401 | Msa0065360:CDS | 35.0% | |
| TGAGACTTTGTATTAACCAC+AGG | + | chr1_2:27426401-27426420 | None:intergenic | 35.0% | |
| ! | GCAAGAACAAAGTTCTCTTT+TGG | + | chr1_2:27426455-27426474 | None:intergenic | 35.0% |
| GGACTACAATAATGTTTGGT+TGG | - | chr1_2:27426807-27426826 | Msa0065360:intron | 35.0% | |
| CTACAATAATGTTTGGTTGG+GGG | - | chr1_2:27426810-27426829 | Msa0065360:intron | 35.0% | |
| CTTATTGGAAGAAGAGTTGA+GGG | + | chr1_2:27425174-27425193 | None:intergenic | 35.0% | |
| TGTGAGTGTGATAACCTTAT+TGG | + | chr1_2:27425189-27425208 | None:intergenic | 35.0% | |
| AGTGGCAGATTTCTTCTTTA+AGG | + | chr1_2:27425487-27425506 | None:intergenic | 35.0% | |
| AAAGACAAGAACCAAATCCT+CGG | - | chr1_2:27425579-27425598 | Msa0065360:intron | 35.0% | |
| TGCTTATCAAAGAATTGTGG+AGG | + | chr1_2:27425677-27425696 | None:intergenic | 35.0% | |
| AAAACTAGGGCTACAAATCT+TGG | + | chr1_2:27425722-27425741 | None:intergenic | 35.0% | |
| !! | TTTTGTATCTGGTTTCTTGC+AGG | - | chr1_2:27425789-27425808 | Msa0065360:CDS | 35.0% |
| ACTTACAAGTACAGTGATTG+CGG | + | chr1_2:27425923-27425942 | None:intergenic | 35.0% | |
| ! | ACCCTAAACACAGTGTTTTA+CGG | + | chr1_2:27426051-27426070 | None:intergenic | 35.0% |
| ! | GGACAGTTTGATTCTTTTGT+TGG | + | chr1_2:27426380-27426399 | None:intergenic | 35.0% |
| AAAAGAATCAAACTGTCCTG+TGG | - | chr1_2:27426382-27426401 | Msa0065360:CDS | 35.0% | |
| TGAGACTTTGTATTAACCAC+AGG | + | chr1_2:27426401-27426420 | None:intergenic | 35.0% | |
| ! | GCAAGAACAAAGTTCTCTTT+TGG | + | chr1_2:27426455-27426474 | None:intergenic | 35.0% |
| GGACTACAATAATGTTTGGT+TGG | - | chr1_2:27426807-27426826 | Msa0065360:intron | 35.0% | |
| CTACAATAATGTTTGGTTGG+GGG | - | chr1_2:27426810-27426829 | Msa0065360:intron | 35.0% | |
| CCTTATTGGAAGAAGAGTTG+AGG | + | chr1_2:27425175-27425194 | None:intergenic | 40.0% | |
| CCTCAACTCTTCTTCCAATA+AGG | - | chr1_2:27425172-27425191 | Msa0065360:CDS | 40.0% | |
| ATGGTGATATGATTGGGCAA+AGG | + | chr1_2:27425260-27425279 | None:intergenic | 40.0% | |
| ! | GTCTTTTCCACGATATGAGT+AGG | + | chr1_2:27425448-27425467 | None:intergenic | 40.0% |
| !!! | GTTTTTTCATGCCGAGGATT+TGG | + | chr1_2:27425593-27425612 | None:intergenic | 40.0% |
| ! | AAGTGTCACTCTTCTCAAAG+CGG | + | chr1_2:27425620-27425639 | None:intergenic | 40.0% |
| GCTACAAATCTTGGAACCTA+GGG | + | chr1_2:27425713-27425732 | None:intergenic | 40.0% | |
| CCAAAGCATAACATTCTTGC+AGG | + | chr1_2:27425953-27425972 | None:intergenic | 40.0% | |
| CCTGCAAGAATGTTATGCTT+TGG | - | chr1_2:27425950-27425969 | Msa0065360:intron | 40.0% | |
| TCCCGTAAAACACTGTGTTT+AGG | - | chr1_2:27426046-27426065 | Msa0065360:intron | 40.0% | |
| ! | CCCTAAACACAGTGTTTTAC+GGG | + | chr1_2:27426050-27426069 | None:intergenic | 40.0% |
| CCCGTAAAACACTGTGTTTA+GGG | - | chr1_2:27426047-27426066 | Msa0065360:intron | 40.0% | |
| ! | GTAGCACTTACAGATTTGGT+GGG | + | chr1_2:27426488-27426507 | None:intergenic | 40.0% |
| TGTAGCACTTACAGATTTGG+TGG | + | chr1_2:27426489-27426508 | None:intergenic | 40.0% | |
| ! | ATGATGGTGCTAGTATGTCT+TGG | - | chr1_2:27426905-27426924 | Msa0065360:intron | 40.0% |
| CCTTATTGGAAGAAGAGTTG+AGG | + | chr1_2:27425175-27425194 | None:intergenic | 40.0% | |
| CCTCAACTCTTCTTCCAATA+AGG | - | chr1_2:27425172-27425191 | Msa0065360:CDS | 40.0% | |
| ATGGTGATATGATTGGGCAA+AGG | + | chr1_2:27425260-27425279 | None:intergenic | 40.0% | |
| ! | GTCTTTTCCACGATATGAGT+AGG | + | chr1_2:27425448-27425467 | None:intergenic | 40.0% |
| !!! | GTTTTTTCATGCCGAGGATT+TGG | + | chr1_2:27425593-27425612 | None:intergenic | 40.0% |
| ! | AAGTGTCACTCTTCTCAAAG+CGG | + | chr1_2:27425620-27425639 | None:intergenic | 40.0% |
| GCTACAAATCTTGGAACCTA+GGG | + | chr1_2:27425713-27425732 | None:intergenic | 40.0% | |
| CCAAAGCATAACATTCTTGC+AGG | + | chr1_2:27425953-27425972 | None:intergenic | 40.0% | |
| CCTGCAAGAATGTTATGCTT+TGG | - | chr1_2:27425950-27425969 | Msa0065360:intron | 40.0% | |
| TCCCGTAAAACACTGTGTTT+AGG | - | chr1_2:27426046-27426065 | Msa0065360:intron | 40.0% | |
| ! | CCCTAAACACAGTGTTTTAC+GGG | + | chr1_2:27426050-27426069 | None:intergenic | 40.0% |
| CCCGTAAAACACTGTGTTTA+GGG | - | chr1_2:27426047-27426066 | Msa0065360:intron | 40.0% | |
| ! | GTAGCACTTACAGATTTGGT+GGG | + | chr1_2:27426488-27426507 | None:intergenic | 40.0% |
| TGTAGCACTTACAGATTTGG+TGG | + | chr1_2:27426489-27426508 | None:intergenic | 40.0% | |
| ! | ATGATGGTGCTAGTATGTCT+TGG | - | chr1_2:27426905-27426924 | Msa0065360:intron | 40.0% |
| ! | CACCATTGGACTTGGTAGAT+GGG | - | chr1_2:27425524-27425543 | Msa0065360:intron | 45.0% |
| TTCCCATCTACCAAGTCCAA+TGG | + | chr1_2:27425529-27425548 | None:intergenic | 45.0% | |
| ! | ATTGGACTTGGTAGATGGGA+AGG | - | chr1_2:27425528-27425547 | Msa0065360:intron | 45.0% |
| !!! | GGAAACGTTTTTTCATGCCG+AGG | + | chr1_2:27425599-27425618 | None:intergenic | 45.0% |
| AAGAGTGACACTTCCCAAGA+TGG | - | chr1_2:27425627-27425646 | Msa0065360:intron | 45.0% | |
| CAAGATCCATCCACCATCTT+GGG | + | chr1_2:27425643-27425662 | None:intergenic | 45.0% | |
| GGCTACAAATCTTGGAACCT+AGG | + | chr1_2:27425714-27425733 | None:intergenic | 45.0% | |
| CCAGGAACGATTGTCATTCT+TGG | + | chr1_2:27425895-27425914 | None:intergenic | 45.0% | |
| CCAAGAATGACAATCGTTCC+TGG | - | chr1_2:27425892-27425911 | Msa0065360:intron | 45.0% | |
| GTAGATGGCGATGAAGATGA+TGG | - | chr1_2:27426889-27426908 | Msa0065360:intron | 45.0% | |
| AGCTGCAACGAAAACAACTC+AGG | + | chr1_2:27426931-27426950 | None:intergenic | 45.0% | |
| CAGCTGAGAGAGATGAATGA+AGG | - | chr1_2:27426946-27426965 | Msa0065360:CDS | 45.0% | |
| TGAAGGATGCTTGATCGAAG+AGG | - | chr1_2:27426963-27426982 | Msa0065360:CDS | 45.0% | |
| ! | CACCATTGGACTTGGTAGAT+GGG | - | chr1_2:27425524-27425543 | Msa0065360:intron | 45.0% |
| TTCCCATCTACCAAGTCCAA+TGG | + | chr1_2:27425529-27425548 | None:intergenic | 45.0% | |
| ! | ATTGGACTTGGTAGATGGGA+AGG | - | chr1_2:27425528-27425547 | Msa0065360:intron | 45.0% |
| !!! | GGAAACGTTTTTTCATGCCG+AGG | + | chr1_2:27425599-27425618 | None:intergenic | 45.0% |
| AAGAGTGACACTTCCCAAGA+TGG | - | chr1_2:27425627-27425646 | Msa0065360:intron | 45.0% | |
| CAAGATCCATCCACCATCTT+GGG | + | chr1_2:27425643-27425662 | None:intergenic | 45.0% | |
| GGCTACAAATCTTGGAACCT+AGG | + | chr1_2:27425714-27425733 | None:intergenic | 45.0% | |
| CCAGGAACGATTGTCATTCT+TGG | + | chr1_2:27425895-27425914 | None:intergenic | 45.0% | |
| CCAAGAATGACAATCGTTCC+TGG | - | chr1_2:27425892-27425911 | Msa0065360:intron | 45.0% | |
| GTAGATGGCGATGAAGATGA+TGG | - | chr1_2:27426889-27426908 | Msa0065360:intron | 45.0% | |
| AGCTGCAACGAAAACAACTC+AGG | + | chr1_2:27426931-27426950 | None:intergenic | 45.0% | |
| CAGCTGAGAGAGATGAATGA+AGG | - | chr1_2:27426946-27426965 | Msa0065360:CDS | 45.0% | |
| TGAAGGATGCTTGATCGAAG+AGG | - | chr1_2:27426963-27426982 | Msa0065360:CDS | 45.0% | |
| TCGGCACAGCAAAGAATCCA+TGG | - | chr1_2:27425297-27425316 | Msa0065360:CDS | 50.0% | |
| CGGCACAGCAAAGAATCCAT+GGG | - | chr1_2:27425298-27425317 | Msa0065360:CDS | 50.0% | |
| GGAGCTTCCTACTCATATCG+TGG | - | chr1_2:27425438-27425457 | Msa0065360:intron | 50.0% | |
| GTAGTTCGCACCATTGGACT+TGG | - | chr1_2:27425516-27425535 | Msa0065360:intron | 50.0% | |
| ! | GCACCATTGGACTTGGTAGA+TGG | - | chr1_2:27425523-27425542 | Msa0065360:intron | 50.0% |
| AGTGACACTTCCCAAGATGG+TGG | - | chr1_2:27425630-27425649 | Msa0065360:intron | 50.0% | |
| !! | ACACTTCCCAAGATGGTGGA+TGG | - | chr1_2:27425634-27425653 | Msa0065360:intron | 50.0% |
| GCAAGATCCATCCACCATCT+TGG | + | chr1_2:27425644-27425663 | None:intergenic | 50.0% | |
| GCAATCCTTTGGTAAGCCCT+AGG | - | chr1_2:27425694-27425713 | Msa0065360:intron | 50.0% | |
| TGGAACCTAGGGCTTACCAA+AGG | + | chr1_2:27425702-27425721 | None:intergenic | 50.0% | |
| ACAAGTACAGTGATTGCGGC+AGG | + | chr1_2:27425919-27425938 | None:intergenic | 50.0% | |
| TCGGCACAGCAAAGAATCCA+TGG | - | chr1_2:27425297-27425316 | Msa0065360:CDS | 50.0% | |
| CGGCACAGCAAAGAATCCAT+GGG | - | chr1_2:27425298-27425317 | Msa0065360:CDS | 50.0% | |
| GGAGCTTCCTACTCATATCG+TGG | - | chr1_2:27425438-27425457 | Msa0065360:intron | 50.0% | |
| GTAGTTCGCACCATTGGACT+TGG | - | chr1_2:27425516-27425535 | Msa0065360:intron | 50.0% | |
| ! | GCACCATTGGACTTGGTAGA+TGG | - | chr1_2:27425523-27425542 | Msa0065360:intron | 50.0% |
| AGTGACACTTCCCAAGATGG+TGG | - | chr1_2:27425630-27425649 | Msa0065360:intron | 50.0% | |
| !! | ACACTTCCCAAGATGGTGGA+TGG | - | chr1_2:27425634-27425653 | Msa0065360:intron | 50.0% |
| GCAAGATCCATCCACCATCT+TGG | + | chr1_2:27425644-27425663 | None:intergenic | 50.0% | |
| GCAATCCTTTGGTAAGCCCT+AGG | - | chr1_2:27425694-27425713 | Msa0065360:intron | 50.0% | |
| TGGAACCTAGGGCTTACCAA+AGG | + | chr1_2:27425702-27425721 | None:intergenic | 50.0% | |
| ACAAGTACAGTGATTGCGGC+AGG | + | chr1_2:27425919-27425938 | None:intergenic | 50.0% | |
| TCACGCGTAGTTCGCACCAT+TGG | - | chr1_2:27425510-27425529 | Msa0065360:intron | 55.0% | |
| AGATGGGAAGGTGAAGACGC+TGG | - | chr1_2:27425540-27425559 | Msa0065360:intron | 55.0% | |
| TCACGCGTAGTTCGCACCAT+TGG | - | chr1_2:27425510-27425529 | Msa0065360:intron | 55.0% | |
| AGATGGGAAGGTGAAGACGC+TGG | - | chr1_2:27425540-27425559 | Msa0065360:intron | 55.0% | |
| GCGAACTACGCGTGAGCTAG+TGG | + | chr1_2:27425505-27425524 | None:intergenic | 60.0% | |
| ACAGTGATTGCGGCAGGTCC+AGG | + | chr1_2:27425913-27425932 | None:intergenic | 60.0% | |
| GCGAACTACGCGTGAGCTAG+TGG | + | chr1_2:27425505-27425524 | None:intergenic | 60.0% | |
| ACAGTGATTGCGGCAGGTCC+AGG | + | chr1_2:27425913-27425932 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 27425167 | 27427053 | 27425167 | ID=Msa0065360;Name=Msa0065360 |
| chr1_2 | mRNA | 27425167 | 27427053 | 27425167 | ID=Msa0065360-mRNA-1;Parent=Msa0065360;Name=Msa0065360-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|0.75|0.6|5|0|281 |
| chr1_2 | exon | 27426926 | 27427053 | 27426926 | ID=Msa0065360-mRNA-1:exon:9560;Parent=Msa0065360-mRNA-1 |
| chr1_2 | exon | 27426516 | 27426711 | 27426516 | ID=Msa0065360-mRNA-1:exon:9559;Parent=Msa0065360-mRNA-1 |
| chr1_2 | exon | 27426284 | 27426409 | 27426284 | ID=Msa0065360-mRNA-1:exon:9558;Parent=Msa0065360-mRNA-1 |
| chr1_2 | exon | 27425724 | 27425873 | 27425724 | ID=Msa0065360-mRNA-1:exon:9557;Parent=Msa0065360-mRNA-1 |
| chr1_2 | exon | 27425167 | 27425412 | 27425167 | ID=Msa0065360-mRNA-1:exon:9556;Parent=Msa0065360-mRNA-1 |
| chr1_2 | CDS | 27426926 | 27427053 | 27426926 | ID=Msa0065360-mRNA-1:cds;Parent=Msa0065360-mRNA-1 |
| chr1_2 | CDS | 27426516 | 27426711 | 27426516 | ID=Msa0065360-mRNA-1:cds;Parent=Msa0065360-mRNA-1 |
| chr1_2 | CDS | 27426284 | 27426409 | 27426284 | ID=Msa0065360-mRNA-1:cds;Parent=Msa0065360-mRNA-1 |
| chr1_2 | CDS | 27425724 | 27425873 | 27425724 | ID=Msa0065360-mRNA-1:cds;Parent=Msa0065360-mRNA-1 |
| chr1_2 | CDS | 27425167 | 27425412 | 27425167 | ID=Msa0065360-mRNA-1:cds;Parent=Msa0065360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
