Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0065530 | KEH41184.1 | 61.625 | 357 | 112 | 2 | 1 | 356 | 1 | 333 | 3.62e-145 | 424 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0065530 | sp|Q9M8K2|REM21_ARATH | 24.859 | 354 | 218 | 9 | 4 | 356 | 18 | 324 | 2.40e-17 | 85.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0065530 | A0A072VGK8 | 61.625 | 357 | 112 | 2 | 1 | 356 | 1 | 333 | 1.73e-145 | 424 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0065530 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0065530 | MtrunA17_Chr1g0169171 | 59.627 | 322 | 105 | 3 | 36 | 356 | 3 | 300 | 4.50e-127 | 367 |
| Msa0065530 | MtrunA17_Chr1g0169161 | 94.350 | 177 | 10 | 0 | 185 | 361 | 161 | 337 | 2.87e-123 | 358 |
| Msa0065530 | MtrunA17_Chr1g0169081 | 74.850 | 167 | 39 | 1 | 194 | 357 | 157 | 323 | 1.15e-87 | 267 |
| Msa0065530 | MtrunA17_Chr3g0125151 | 72.000 | 125 | 33 | 1 | 232 | 356 | 1 | 123 | 6.90e-65 | 202 |
| Msa0065530 | MtrunA17_Chr3g0125161 | 75.000 | 120 | 30 | 0 | 2 | 121 | 13 | 132 | 4.87e-58 | 186 |
| Msa0065530 | MtrunA17_Chr1g0154251 | 26.531 | 147 | 105 | 2 | 12 | 157 | 27 | 171 | 3.76e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0065530 | AT3G06160.5 | 24.859 | 354 | 218 | 9 | 4 | 356 | 3 | 309 | 1.60e-18 | 85.5 |
| Msa0065530 | AT3G06160.4 | 24.859 | 354 | 218 | 9 | 4 | 356 | 3 | 309 | 1.60e-18 | 85.5 |
| Msa0065530 | AT3G06160.3 | 24.859 | 354 | 218 | 9 | 4 | 356 | 3 | 309 | 1.60e-18 | 85.5 |
| Msa0065530 | AT3G06160.1 | 24.859 | 354 | 218 | 9 | 4 | 356 | 18 | 324 | 2.44e-18 | 85.1 |
| Msa0065530 | AT3G06160.2 | 24.859 | 354 | 218 | 9 | 4 | 356 | 62 | 368 | 6.70e-18 | 84.3 |
| Msa0065530 | AT5G57720.1 | 23.184 | 358 | 212 | 14 | 1 | 356 | 3 | 299 | 4.30e-15 | 75.5 |
| Msa0065530 | AT5G60140.1 | 22.129 | 357 | 221 | 8 | 11 | 355 | 15 | 326 | 4.17e-13 | 70.1 |
| Msa0065530 | AT3G53310.1 | 23.224 | 366 | 190 | 12 | 1 | 357 | 1 | 284 | 4.58e-12 | 66.2 |
| Msa0065530 | AT3G18960.1 | 34.951 | 103 | 64 | 2 | 11 | 112 | 30 | 130 | 6.38e-11 | 62.0 |
| Msa0065530 | AT5G18000.1 | 38.144 | 97 | 56 | 3 | 9 | 102 | 18 | 113 | 6.49e-11 | 63.2 |
| Msa0065530 | AT4G34400.2 | 33.945 | 109 | 70 | 1 | 2 | 110 | 7 | 113 | 6.99e-11 | 63.5 |
| Msa0065530 | AT4G34400.1 | 33.945 | 109 | 70 | 1 | 2 | 110 | 7 | 113 | 6.99e-11 | 63.5 |
| Msa0065530 | AT3G18960.2 | 34.951 | 103 | 64 | 2 | 11 | 112 | 30 | 130 | 7.56e-11 | 61.2 |
Find 56 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCAGAGTGCTTCTCTTTA+AGG | 0.090193 | 1_2:-28015038 | None:intergenic |
| TCAAAACTTACATGCTTTGC+AGG | 0.294940 | 1_2:-28015928 | None:intergenic |
| ACCAAGTTCACAAAAGCATT+TGG | 0.331753 | 1_2:-28015384 | None:intergenic |
| AAAGAATTATACCAATTCAT+TGG | 0.334519 | 1_2:-28016165 | None:intergenic |
| TGAGGAGGAAAATAATAATA+TGG | 0.339726 | 1_2:+28015647 | Msa0065530:CDS |
| TAGAGAAGAAAATTGTTTAG+TGG | 0.355645 | 1_2:+28015527 | Msa0065530:CDS |
| CATCAATTTCATCATCTTCA+AGG | 0.360750 | 1_2:-28016082 | None:intergenic |
| TGAACTTGGTGCGTTCAAAA+AGG | 0.361173 | 1_2:+28015397 | Msa0065530:CDS |
| TGATAAGGGTGCACATTGTT+AGG | 0.364925 | 1_2:+28016749 | Msa0065530:CDS |
| GATGGTGATGATGTTGATTA+TGG | 0.366118 | 1_2:+28015690 | Msa0065530:CDS |
| GCAATGAAGTGTGGATTTCC+TGG | 0.373131 | 1_2:-28016122 | None:intergenic |
| CTCTTCCTCTACGATCTCTT+AGG | 0.380260 | 1_2:-28015440 | None:intergenic |
| GGAAGATGAGGAAGAGGAAG+AGG | 0.385448 | 1_2:+28015668 | Msa0065530:CDS |
| CCAAGTTCACAAAAGCATTT+GGG | 0.414978 | 1_2:-28015383 | None:intergenic |
| AAGAATTATACCAATTCATT+GGG | 0.416544 | 1_2:-28016164 | None:intergenic |
| GAGAAGCAATAGAAATGATA+AGG | 0.417868 | 1_2:+28016734 | Msa0065530:CDS |
| TCTTTACAGACCCAATGAAT+TGG | 0.436856 | 1_2:+28016154 | Msa0065530:CDS |
| GACATTGGAAGCAGCTCTGC+AGG | 0.450906 | 1_2:+28016053 | Msa0065530:CDS |
| CATGTCAAAGCGCGTCGTAT+TGG | 0.452247 | 1_2:+28015468 | Msa0065530:CDS |
| TAATATGGAAGATGAGGAAG+AGG | 0.461266 | 1_2:+28015662 | Msa0065530:CDS |
| GAGATCGTAGAGGAAGAGAT+TGG | 0.486399 | 1_2:+28015445 | Msa0065530:CDS |
| TACAAGGAAAATAATAAAAG+TGG | 0.503753 | 1_2:+28015888 | Msa0065530:CDS |
| AATGGCCGAGTCTTGGTGCT+AGG | 0.508826 | 1_2:+28016637 | Msa0065530:CDS |
| CCTTGCAGTGGCAACATACA+AGG | 0.512825 | 1_2:-28016400 | None:intergenic |
| GATGAGGAAGAGGAAGAGGA+TGG | 0.519418 | 1_2:+28015672 | Msa0065530:CDS |
| AGAGAAGCACTCTGAGAGAA+TGG | 0.526426 | 1_2:+28015044 | Msa0065530:CDS |
| AGAGAGGTCAAATACGTACT+TGG | 0.526584 | 1_2:+28016611 | Msa0065530:CDS |
| AACAATGGAAAGGAGTATCC+TGG | 0.540742 | 1_2:+28015000 | Msa0065530:CDS |
| AGAAGCAATAGAAATGATAA+GGG | 0.545719 | 1_2:+28016735 | Msa0065530:CDS |
| ATGGCCGAGTCTTGGTGCTA+GGG | 0.545802 | 1_2:+28016638 | Msa0065530:CDS |
| AACGAAACTATGACTAACAA+TGG | 0.546588 | 1_2:+28014985 | None:intergenic |
| AAGGGTGCACATTGTTAGGA+AGG | 0.551559 | 1_2:+28016753 | Msa0065530:CDS |
| GTGTGAAAAGATGCCGGTGA+TGG | 0.558389 | 1_2:+28015623 | Msa0065530:CDS |
| AAATAATAATATGGAAGATG+AGG | 0.565051 | 1_2:+28015656 | Msa0065530:CDS |
| ACAGAGTGAAAATGTGTACA+AGG | 0.566220 | 1_2:+28015872 | Msa0065530:CDS |
| TAATGATGATGATGATATGA+TGG | 0.571680 | 1_2:+28015776 | Msa0065530:CDS |
| GACGATGAGGGTGATGATGA+GGG | 0.579768 | 1_2:+28015753 | Msa0065530:CDS |
| CCTTGTATGTTGCCACTGCA+AGG | 0.583961 | 1_2:+28016400 | Msa0065530:CDS |
| TTTAGAATTATACCTTGCAG+TGG | 0.595197 | 1_2:-28016412 | None:intergenic |
| TGACGATGAGGGTGATGATG+AGG | 0.595776 | 1_2:+28015752 | Msa0065530:CDS |
| AAAGATGCCGGTGATGGATG+AGG | 0.602253 | 1_2:+28015629 | Msa0065530:CDS |
| GCCACCCTAGCACCAAGACT+CGG | 0.602379 | 1_2:-28016642 | None:intergenic |
| GCCGAGTCTTGGTGCTAGGG+TGG | 0.603546 | 1_2:+28016641 | Msa0065530:CDS |
| TGATGTTGATAATGCTGAAG+AGG | 0.604859 | 1_2:+28015719 | Msa0065530:CDS |
| AACTATGACTAACAATGGAA+AGG | 0.606736 | 1_2:+28014990 | None:intergenic |
| ATCAATGTGTGAAAAGATGC+CGG | 0.608751 | 1_2:+28015617 | Msa0065530:CDS |
| GTATGTCTTGTGCTGATCTG+TGG | 0.608903 | 1_2:-28016583 | None:intergenic |
| TGATGATGATATGATGGCAG+AGG | 0.617100 | 1_2:+28015782 | Msa0065530:CDS |
| GGTGATGATAGTGACGATGA+GGG | 0.623737 | 1_2:+28015741 | Msa0065530:CDS |
| GGGTGATGATAGTGACGATG+AGG | 0.647049 | 1_2:+28015740 | Msa0065530:CDS |
| GATGCCGGTGATGGATGAGG+AGG | 0.648893 | 1_2:+28015632 | Msa0065530:CDS |
| GCTGAAATGTACATTCAACC+AGG | 0.656893 | 1_2:+28016104 | Msa0065530:CDS |
| GATGTTGATAATGCTGAAGA+GGG | 0.676506 | 1_2:+28015720 | Msa0065530:CDS |
| TGTGAACTTGTAATGCGTAA+CGG | 0.682308 | 1_2:+28016712 | Msa0065530:CDS |
| ACAAGACATACCGAAAAGAG+AGG | 0.689496 | 1_2:+28016595 | Msa0065530:CDS |
| TTTATCCTAAGAGATCGTAG+AGG | 0.735718 | 1_2:+28015435 | Msa0065530:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAAAATTTTAACATATTGTA+TGG | + | chr1_2:28015214-28015233 | Msa0065530:intron | 15.0% |
| !!! | ATTACCAAATGATTTTTTTT+AGG | + | chr1_2:28016029-28016048 | Msa0065530:intron | 15.0% |
| !!! | TTACCAAATGATTTTTTTTA+GGG | + | chr1_2:28016030-28016049 | Msa0065530:intron | 15.0% |
| !!! | CAAAATTTTAACATATTGTA+TGG | + | chr1_2:28015214-28015233 | Msa0065530:intron | 15.0% |
| !!! | ATTACCAAATGATTTTTTTT+AGG | + | chr1_2:28016029-28016048 | Msa0065530:intron | 15.0% |
| !!! | TTACCAAATGATTTTTTTTA+GGG | + | chr1_2:28016030-28016049 | Msa0065530:intron | 15.0% |
| !!! | ATTTTGCTTTTTGATAAAGT+CGG | + | chr1_2:28015104-28015123 | Msa0065530:intron | 20.0% |
| !! | TTTCAATATGAGTAAAAACA+AGG | - | chr1_2:28015563-28015582 | None:intergenic | 20.0% |
| !! | AAATAATAATATGGAAGATG+AGG | + | chr1_2:28015656-28015675 | Msa0065530:CDS | 20.0% |
| !! | TACAAGGAAAATAATAAAAG+TGG | + | chr1_2:28015888-28015907 | Msa0065530:CDS | 20.0% |
| !!! | TACCAAATGATTTTTTTTAG+GGG | + | chr1_2:28016031-28016050 | Msa0065530:intron | 20.0% |
| !! | AAGAATTATACCAATTCATT+GGG | - | chr1_2:28016167-28016186 | None:intergenic | 20.0% |
| !! | AAAGAATTATACCAATTCAT+TGG | - | chr1_2:28016168-28016187 | None:intergenic | 20.0% |
| !!! | TTTTCCAAAAAATGTTATCA+AGG | + | chr1_2:28016346-28016365 | Msa0065530:CDS | 20.0% |
| !!! | AAATCCTTGATAACATTTTT+TGG | - | chr1_2:28016353-28016372 | None:intergenic | 20.0% |
| !! | AATATCCTGTCATAAAAAAA+AGG | - | chr1_2:28016527-28016546 | None:intergenic | 20.0% |
| !!! | ATTTTGCTTTTTGATAAAGT+CGG | + | chr1_2:28015104-28015123 | Msa0065530:intron | 20.0% |
| !! | TTTCAATATGAGTAAAAACA+AGG | - | chr1_2:28015563-28015582 | None:intergenic | 20.0% |
| !! | AAATAATAATATGGAAGATG+AGG | + | chr1_2:28015656-28015675 | Msa0065530:CDS | 20.0% |
| !! | TACAAGGAAAATAATAAAAG+TGG | + | chr1_2:28015888-28015907 | Msa0065530:CDS | 20.0% |
| !!! | TACCAAATGATTTTTTTTAG+GGG | + | chr1_2:28016031-28016050 | Msa0065530:intron | 20.0% |
| !! | AAGAATTATACCAATTCATT+GGG | - | chr1_2:28016167-28016186 | None:intergenic | 20.0% |
| !! | AAAGAATTATACCAATTCAT+TGG | - | chr1_2:28016168-28016187 | None:intergenic | 20.0% |
| !!! | TTTTCCAAAAAATGTTATCA+AGG | + | chr1_2:28016346-28016365 | Msa0065530:CDS | 20.0% |
| !!! | AAATCCTTGATAACATTTTT+TGG | - | chr1_2:28016353-28016372 | None:intergenic | 20.0% |
| !! | AATATCCTGTCATAAAAAAA+AGG | - | chr1_2:28016527-28016546 | None:intergenic | 20.0% |
| ! | ACTATATGATATGTGAACTT+TGG | + | chr1_2:28015277-28015296 | Msa0065530:intron | 25.0% |
| !!! | AGTTTTATTTTGATGATGGT+TGG | + | chr1_2:28015496-28015515 | Msa0065530:CDS | 25.0% |
| ! | TAGAGAAGAAAATTGTTTAG+TGG | + | chr1_2:28015527-28015546 | Msa0065530:CDS | 25.0% |
| ! | TGAGGAGGAAAATAATAATA+TGG | + | chr1_2:28015647-28015666 | Msa0065530:CDS | 25.0% |
| !! | TAATGATGATGATGATATGA+TGG | + | chr1_2:28015776-28015795 | Msa0065530:CDS | 25.0% |
| !!! | TATTTTTTACCATACGCAAA+AGG | + | chr1_2:28016216-28016235 | Msa0065530:intron | 25.0% |
| !!! | TTCATCCTTTTTTTTATGAC+AGG | + | chr1_2:28016519-28016538 | Msa0065530:intron | 25.0% |
| ! | AGAAGCAATAGAAATGATAA+GGG | + | chr1_2:28016735-28016754 | Msa0065530:CDS | 25.0% |
| ! | ACTATATGATATGTGAACTT+TGG | + | chr1_2:28015277-28015296 | Msa0065530:intron | 25.0% |
| !!! | AGTTTTATTTTGATGATGGT+TGG | + | chr1_2:28015496-28015515 | Msa0065530:CDS | 25.0% |
| ! | TAGAGAAGAAAATTGTTTAG+TGG | + | chr1_2:28015527-28015546 | Msa0065530:CDS | 25.0% |
| ! | TGAGGAGGAAAATAATAATA+TGG | + | chr1_2:28015647-28015666 | Msa0065530:CDS | 25.0% |
| !! | TAATGATGATGATGATATGA+TGG | + | chr1_2:28015776-28015795 | Msa0065530:CDS | 25.0% |
| !!! | TATTTTTTACCATACGCAAA+AGG | + | chr1_2:28016216-28016235 | Msa0065530:intron | 25.0% |
| !!! | TTCATCCTTTTTTTTATGAC+AGG | + | chr1_2:28016519-28016538 | Msa0065530:intron | 25.0% |
| ! | AGAAGCAATAGAAATGATAA+GGG | + | chr1_2:28016735-28016754 | Msa0065530:CDS | 25.0% |
| TTCAAAAAGGAGGGTAATAA+AGG | + | chr1_2:28015410-28015429 | Msa0065530:CDS | 30.0% | |
| !!! | GACGAGTTTTATTTTGATGA+TGG | + | chr1_2:28015492-28015511 | Msa0065530:CDS | 30.0% |
| GTCCCCTAAAAAAAATCATT+TGG | - | chr1_2:28016036-28016055 | None:intergenic | 30.0% | |
| !!! | TGATTTTTTTTAGGGGACAT+TGG | + | chr1_2:28016038-28016057 | Msa0065530:intron | 30.0% |
| CATCAATTTCATCATCTTCA+AGG | - | chr1_2:28016085-28016104 | None:intergenic | 30.0% | |
| CGTCTTTGATGTACTTATTA+TGG | + | chr1_2:28016312-28016331 | Msa0065530:intron | 30.0% | |
| ! | TTTAGAATTATACCTTGCAG+TGG | - | chr1_2:28016415-28016434 | None:intergenic | 30.0% |
| CAAATACGTACTTGGAAAAA+TGG | + | chr1_2:28016619-28016638 | Msa0065530:CDS | 30.0% | |
| GAGAAGCAATAGAAATGATA+AGG | + | chr1_2:28016734-28016753 | Msa0065530:CDS | 30.0% | |
| TTCAAAAAGGAGGGTAATAA+AGG | + | chr1_2:28015410-28015429 | Msa0065530:CDS | 30.0% | |
| !!! | GACGAGTTTTATTTTGATGA+TGG | + | chr1_2:28015492-28015511 | Msa0065530:CDS | 30.0% |
| GTCCCCTAAAAAAAATCATT+TGG | - | chr1_2:28016036-28016055 | None:intergenic | 30.0% | |
| !!! | TGATTTTTTTTAGGGGACAT+TGG | + | chr1_2:28016038-28016057 | Msa0065530:intron | 30.0% |
| CATCAATTTCATCATCTTCA+AGG | - | chr1_2:28016085-28016104 | None:intergenic | 30.0% | |
| CGTCTTTGATGTACTTATTA+TGG | + | chr1_2:28016312-28016331 | Msa0065530:intron | 30.0% | |
| ! | TTTAGAATTATACCTTGCAG+TGG | - | chr1_2:28016415-28016434 | None:intergenic | 30.0% |
| CAAATACGTACTTGGAAAAA+TGG | + | chr1_2:28016619-28016638 | Msa0065530:CDS | 30.0% | |
| GAGAAGCAATAGAAATGATA+AGG | + | chr1_2:28016734-28016753 | Msa0065530:CDS | 30.0% | |
| ATCATGCAAGTGTACATTTG+AGG | - | chr1_2:28015189-28015208 | None:intergenic | 35.0% | |
| !! | TAAGTAGCATTGATCTTCAC+TGG | + | chr1_2:28015337-28015356 | Msa0065530:intron | 35.0% |
| !! | CCAAGTTCACAAAAGCATTT+GGG | - | chr1_2:28015386-28015405 | None:intergenic | 35.0% |
| !! | ACCAAGTTCACAAAAGCATT+TGG | - | chr1_2:28015387-28015406 | None:intergenic | 35.0% |
| TTTATCCTAAGAGATCGTAG+AGG | + | chr1_2:28015435-28015454 | Msa0065530:CDS | 35.0% | |
| ATCAATGTGTGAAAAGATGC+CGG | + | chr1_2:28015617-28015636 | Msa0065530:CDS | 35.0% | |
| TAATATGGAAGATGAGGAAG+AGG | + | chr1_2:28015662-28015681 | Msa0065530:CDS | 35.0% | |
| ! | GATGGTGATGATGTTGATTA+TGG | + | chr1_2:28015690-28015709 | Msa0065530:CDS | 35.0% |
| !! | TGATGTTGATAATGCTGAAG+AGG | + | chr1_2:28015719-28015738 | Msa0065530:CDS | 35.0% |
| !! | GATGTTGATAATGCTGAAGA+GGG | + | chr1_2:28015720-28015739 | Msa0065530:CDS | 35.0% |
| ACAGAGTGAAAATGTGTACA+AGG | + | chr1_2:28015872-28015891 | Msa0065530:CDS | 35.0% | |
| TCAAAACTTACATGCTTTGC+AGG | - | chr1_2:28015931-28015950 | None:intergenic | 35.0% | |
| ! | CTATGTTTTGCAATGAAGTG+TGG | - | chr1_2:28016134-28016153 | None:intergenic | 35.0% |
| TCTTTACAGACCCAATGAAT+TGG | + | chr1_2:28016154-28016173 | Msa0065530:CDS | 35.0% | |
| ! | CACAATAAACCTTTTGCGTA+TGG | - | chr1_2:28016228-28016247 | None:intergenic | 35.0% |
| GACAACACAATCAGTAAAAC+TGG | - | chr1_2:28016474-28016493 | None:intergenic | 35.0% | |
| ! | ACGTATTTGACCTCTCTTTT+CGG | - | chr1_2:28016608-28016627 | None:intergenic | 35.0% |
| TGTGAACTTGTAATGCGTAA+CGG | + | chr1_2:28016712-28016731 | Msa0065530:CDS | 35.0% | |
| ATCATGCAAGTGTACATTTG+AGG | - | chr1_2:28015189-28015208 | None:intergenic | 35.0% | |
| !! | TAAGTAGCATTGATCTTCAC+TGG | + | chr1_2:28015337-28015356 | Msa0065530:intron | 35.0% |
| !! | CCAAGTTCACAAAAGCATTT+GGG | - | chr1_2:28015386-28015405 | None:intergenic | 35.0% |
| !! | ACCAAGTTCACAAAAGCATT+TGG | - | chr1_2:28015387-28015406 | None:intergenic | 35.0% |
| TTTATCCTAAGAGATCGTAG+AGG | + | chr1_2:28015435-28015454 | Msa0065530:CDS | 35.0% | |
| ATCAATGTGTGAAAAGATGC+CGG | + | chr1_2:28015617-28015636 | Msa0065530:CDS | 35.0% | |
| TAATATGGAAGATGAGGAAG+AGG | + | chr1_2:28015662-28015681 | Msa0065530:CDS | 35.0% | |
| ! | GATGGTGATGATGTTGATTA+TGG | + | chr1_2:28015690-28015709 | Msa0065530:CDS | 35.0% |
| !! | TGATGTTGATAATGCTGAAG+AGG | + | chr1_2:28015719-28015738 | Msa0065530:CDS | 35.0% |
| !! | GATGTTGATAATGCTGAAGA+GGG | + | chr1_2:28015720-28015739 | Msa0065530:CDS | 35.0% |
| ACAGAGTGAAAATGTGTACA+AGG | + | chr1_2:28015872-28015891 | Msa0065530:CDS | 35.0% | |
| TCAAAACTTACATGCTTTGC+AGG | - | chr1_2:28015931-28015950 | None:intergenic | 35.0% | |
| ! | CTATGTTTTGCAATGAAGTG+TGG | - | chr1_2:28016134-28016153 | None:intergenic | 35.0% |
| TCTTTACAGACCCAATGAAT+TGG | + | chr1_2:28016154-28016173 | Msa0065530:CDS | 35.0% | |
| ! | CACAATAAACCTTTTGCGTA+TGG | - | chr1_2:28016228-28016247 | None:intergenic | 35.0% |
| GACAACACAATCAGTAAAAC+TGG | - | chr1_2:28016474-28016493 | None:intergenic | 35.0% | |
| ! | ACGTATTTGACCTCTCTTTT+CGG | - | chr1_2:28016608-28016627 | None:intergenic | 35.0% |
| TGTGAACTTGTAATGCGTAA+CGG | + | chr1_2:28016712-28016731 | Msa0065530:CDS | 35.0% | |
| !! | AACAATGGAAAGGAGTATCC+TGG | + | chr1_2:28015000-28015019 | Msa0065530:CDS | 40.0% |
| ! | AGGAAGACTTTGAAAAAGCC+AGG | - | chr1_2:28015021-28015040 | None:intergenic | 40.0% |
| ! | TCTCAGAGTGCTTCTCTTTA+AGG | - | chr1_2:28015041-28015060 | None:intergenic | 40.0% |
| ! | CATTTGGGATAAGCTGCAAT+AGG | - | chr1_2:28015371-28015390 | None:intergenic | 40.0% |
| ! | CCCAAATGCTTTTGTGAACT+TGG | + | chr1_2:28015383-28015402 | Msa0065530:CDS | 40.0% |
| !! | TGAACTTGGTGCGTTCAAAA+AGG | + | chr1_2:28015397-28015416 | Msa0065530:CDS | 40.0% |
| ! | TGATGATGATATGATGGCAG+AGG | + | chr1_2:28015782-28015801 | Msa0065530:CDS | 40.0% |
| GCTGAAATGTACATTCAACC+AGG | + | chr1_2:28016104-28016123 | Msa0065530:CDS | 40.0% | |
| ! | TGACATGTTTTGTGAAGCAG+AGG | - | chr1_2:28016379-28016398 | None:intergenic | 40.0% |
| ACAAGACATACCGAAAAGAG+AGG | + | chr1_2:28016595-28016614 | Msa0065530:CDS | 40.0% | |
| AGAGAGGTCAAATACGTACT+TGG | + | chr1_2:28016611-28016630 | Msa0065530:CDS | 40.0% | |
| ! | TGATAAGGGTGCACATTGTT+AGG | + | chr1_2:28016749-28016768 | Msa0065530:CDS | 40.0% |
| !! | AACAATGGAAAGGAGTATCC+TGG | + | chr1_2:28015000-28015019 | Msa0065530:CDS | 40.0% |
| ! | AGGAAGACTTTGAAAAAGCC+AGG | - | chr1_2:28015021-28015040 | None:intergenic | 40.0% |
| ! | TCTCAGAGTGCTTCTCTTTA+AGG | - | chr1_2:28015041-28015060 | None:intergenic | 40.0% |
| ! | CATTTGGGATAAGCTGCAAT+AGG | - | chr1_2:28015371-28015390 | None:intergenic | 40.0% |
| ! | CCCAAATGCTTTTGTGAACT+TGG | + | chr1_2:28015383-28015402 | Msa0065530:CDS | 40.0% |
| !! | TGAACTTGGTGCGTTCAAAA+AGG | + | chr1_2:28015397-28015416 | Msa0065530:CDS | 40.0% |
| ! | TGATGATGATATGATGGCAG+AGG | + | chr1_2:28015782-28015801 | Msa0065530:CDS | 40.0% |
| GCTGAAATGTACATTCAACC+AGG | + | chr1_2:28016104-28016123 | Msa0065530:CDS | 40.0% | |
| ! | TGACATGTTTTGTGAAGCAG+AGG | - | chr1_2:28016379-28016398 | None:intergenic | 40.0% |
| ACAAGACATACCGAAAAGAG+AGG | + | chr1_2:28016595-28016614 | Msa0065530:CDS | 40.0% | |
| AGAGAGGTCAAATACGTACT+TGG | + | chr1_2:28016611-28016630 | Msa0065530:CDS | 40.0% | |
| ! | TGATAAGGGTGCACATTGTT+AGG | + | chr1_2:28016749-28016768 | Msa0065530:CDS | 40.0% |
| !! | AGAGAAGCACTCTGAGAGAA+TGG | + | chr1_2:28015044-28015063 | Msa0065530:CDS | 45.0% |
| !! | ACTTGGTGCGTTCAAAAAGG+AGG | + | chr1_2:28015400-28015419 | Msa0065530:CDS | 45.0% |
| ! | CTTGGTGCGTTCAAAAAGGA+GGG | + | chr1_2:28015401-28015420 | Msa0065530:CDS | 45.0% |
| CTCTTCCTCTACGATCTCTT+AGG | - | chr1_2:28015443-28015462 | None:intergenic | 45.0% | |
| GAGATCGTAGAGGAAGAGAT+TGG | + | chr1_2:28015445-28015464 | Msa0065530:CDS | 45.0% | |
| ! | TTTTCCTCCTCATCCATCAC+CGG | - | chr1_2:28015639-28015658 | None:intergenic | 45.0% |
| ! | GGTGATGATAGTGACGATGA+GGG | + | chr1_2:28015741-28015760 | Msa0065530:CDS | 45.0% |
| GCAATGAAGTGTGGATTTCC+TGG | - | chr1_2:28016125-28016144 | None:intergenic | 45.0% | |
| ! | GTATGTCTTGTGCTGATCTG+TGG | - | chr1_2:28016586-28016605 | None:intergenic | 45.0% |
| TTGGAAAAATGGCCGAGTCT+TGG | + | chr1_2:28016630-28016649 | Msa0065530:CDS | 45.0% | |
| ! | AAGGGTGCACATTGTTAGGA+AGG | + | chr1_2:28016753-28016772 | Msa0065530:CDS | 45.0% |
| !! | AGAGAAGCACTCTGAGAGAA+TGG | + | chr1_2:28015044-28015063 | Msa0065530:CDS | 45.0% |
| !! | ACTTGGTGCGTTCAAAAAGG+AGG | + | chr1_2:28015400-28015419 | Msa0065530:CDS | 45.0% |
| ! | CTTGGTGCGTTCAAAAAGGA+GGG | + | chr1_2:28015401-28015420 | Msa0065530:CDS | 45.0% |
| CTCTTCCTCTACGATCTCTT+AGG | - | chr1_2:28015443-28015462 | None:intergenic | 45.0% | |
| GAGATCGTAGAGGAAGAGAT+TGG | + | chr1_2:28015445-28015464 | Msa0065530:CDS | 45.0% | |
| ! | TTTTCCTCCTCATCCATCAC+CGG | - | chr1_2:28015639-28015658 | None:intergenic | 45.0% |
| ! | GGTGATGATAGTGACGATGA+GGG | + | chr1_2:28015741-28015760 | Msa0065530:CDS | 45.0% |
| GCAATGAAGTGTGGATTTCC+TGG | - | chr1_2:28016125-28016144 | None:intergenic | 45.0% | |
| ! | GTATGTCTTGTGCTGATCTG+TGG | - | chr1_2:28016586-28016605 | None:intergenic | 45.0% |
| TTGGAAAAATGGCCGAGTCT+TGG | + | chr1_2:28016630-28016649 | Msa0065530:CDS | 45.0% | |
| ! | AAGGGTGCACATTGTTAGGA+AGG | + | chr1_2:28016753-28016772 | Msa0065530:CDS | 45.0% |
| CATGTCAAAGCGCGTCGTAT+TGG | + | chr1_2:28015468-28015487 | Msa0065530:CDS | 50.0% | |
| GTGTGAAAAGATGCCGGTGA+TGG | + | chr1_2:28015623-28015642 | Msa0065530:CDS | 50.0% | |
| !! | AAAGATGCCGGTGATGGATG+AGG | + | chr1_2:28015629-28015648 | Msa0065530:CDS | 50.0% |
| GGAAGATGAGGAAGAGGAAG+AGG | + | chr1_2:28015668-28015687 | Msa0065530:CDS | 50.0% | |
| GATGAGGAAGAGGAAGAGGA+TGG | + | chr1_2:28015672-28015691 | Msa0065530:CDS | 50.0% | |
| ! | GGGTGATGATAGTGACGATG+AGG | + | chr1_2:28015740-28015759 | Msa0065530:CDS | 50.0% |
| ! | TGACGATGAGGGTGATGATG+AGG | + | chr1_2:28015752-28015771 | Msa0065530:CDS | 50.0% |
| ! | GACGATGAGGGTGATGATGA+GGG | + | chr1_2:28015753-28015772 | Msa0065530:CDS | 50.0% |
| CCTTGCAGTGGCAACATACA+AGG | - | chr1_2:28016403-28016422 | None:intergenic | 50.0% | |
| CCTTGTATGTTGCCACTGCA+AGG | + | chr1_2:28016400-28016419 | Msa0065530:CDS | 50.0% | |
| CATGTCAAAGCGCGTCGTAT+TGG | + | chr1_2:28015468-28015487 | Msa0065530:CDS | 50.0% | |
| GTGTGAAAAGATGCCGGTGA+TGG | + | chr1_2:28015623-28015642 | Msa0065530:CDS | 50.0% | |
| !! | AAAGATGCCGGTGATGGATG+AGG | + | chr1_2:28015629-28015648 | Msa0065530:CDS | 50.0% |
| GGAAGATGAGGAAGAGGAAG+AGG | + | chr1_2:28015668-28015687 | Msa0065530:CDS | 50.0% | |
| GATGAGGAAGAGGAAGAGGA+TGG | + | chr1_2:28015672-28015691 | Msa0065530:CDS | 50.0% | |
| ! | GGGTGATGATAGTGACGATG+AGG | + | chr1_2:28015740-28015759 | Msa0065530:CDS | 50.0% |
| ! | TGACGATGAGGGTGATGATG+AGG | + | chr1_2:28015752-28015771 | Msa0065530:CDS | 50.0% |
| ! | GACGATGAGGGTGATGATGA+GGG | + | chr1_2:28015753-28015772 | Msa0065530:CDS | 50.0% |
| CCTTGCAGTGGCAACATACA+AGG | - | chr1_2:28016403-28016422 | None:intergenic | 50.0% | |
| CCTTGTATGTTGCCACTGCA+AGG | + | chr1_2:28016400-28016419 | Msa0065530:CDS | 50.0% | |
| GACATTGGAAGCAGCTCTGC+AGG | + | chr1_2:28016053-28016072 | Msa0065530:CDS | 55.0% | |
| !! | AATGGCCGAGTCTTGGTGCT+AGG | + | chr1_2:28016637-28016656 | Msa0065530:CDS | 55.0% |
| !! | ATGGCCGAGTCTTGGTGCTA+GGG | + | chr1_2:28016638-28016657 | Msa0065530:CDS | 55.0% |
| GACATTGGAAGCAGCTCTGC+AGG | + | chr1_2:28016053-28016072 | Msa0065530:CDS | 55.0% | |
| !! | AATGGCCGAGTCTTGGTGCT+AGG | + | chr1_2:28016637-28016656 | Msa0065530:CDS | 55.0% |
| !! | ATGGCCGAGTCTTGGTGCTA+GGG | + | chr1_2:28016638-28016657 | Msa0065530:CDS | 55.0% |
| !! | GATGCCGGTGATGGATGAGG+AGG | + | chr1_2:28015632-28015651 | Msa0065530:CDS | 60.0% |
| GCCACCCTAGCACCAAGACT+CGG | - | chr1_2:28016645-28016664 | None:intergenic | 60.0% | |
| !! | GATGCCGGTGATGGATGAGG+AGG | + | chr1_2:28015632-28015651 | Msa0065530:CDS | 60.0% |
| GCCACCCTAGCACCAAGACT+CGG | - | chr1_2:28016645-28016664 | None:intergenic | 60.0% | |
| !! | GCCGAGTCTTGGTGCTAGGG+TGG | + | chr1_2:28016641-28016660 | Msa0065530:CDS | 65.0% |
| !! | GCCGAGTCTTGGTGCTAGGG+TGG | + | chr1_2:28016641-28016660 | Msa0065530:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 28014994 | 28016789 | 28014994 | ID=Msa0065530;Name=Msa0065530 |
| chr1_2 | mRNA | 28014994 | 28016789 | 28014994 | ID=Msa0065530-mRNA-1;Parent=Msa0065530;Name=Msa0065530-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0|0|1|1|1|5|0|361 |
| chr1_2 | exon | 28014994 | 28015065 | 28014994 | ID=Msa0065530-mRNA-1:exon:9629;Parent=Msa0065530-mRNA-1 |
| chr1_2 | exon | 28015378 | 28015939 | 28015378 | ID=Msa0065530-mRNA-1:exon:9630;Parent=Msa0065530-mRNA-1 |
| chr1_2 | exon | 28016051 | 28016175 | 28016051 | ID=Msa0065530-mRNA-1:exon:9631;Parent=Msa0065530-mRNA-1 |
| chr1_2 | exon | 28016344 | 28016421 | 28016344 | ID=Msa0065530-mRNA-1:exon:9632;Parent=Msa0065530-mRNA-1 |
| chr1_2 | exon | 28016541 | 28016789 | 28016541 | ID=Msa0065530-mRNA-1:exon:9633;Parent=Msa0065530-mRNA-1 |
| chr1_2 | CDS | 28014994 | 28015065 | 28014994 | ID=Msa0065530-mRNA-1:cds;Parent=Msa0065530-mRNA-1 |
| chr1_2 | CDS | 28015378 | 28015939 | 28015378 | ID=Msa0065530-mRNA-1:cds;Parent=Msa0065530-mRNA-1 |
| chr1_2 | CDS | 28016051 | 28016175 | 28016051 | ID=Msa0065530-mRNA-1:cds;Parent=Msa0065530-mRNA-1 |
| chr1_2 | CDS | 28016344 | 28016421 | 28016344 | ID=Msa0065530-mRNA-1:cds;Parent=Msa0065530-mRNA-1 |
| chr1_2 | CDS | 28016541 | 28016789 | 28016541 | ID=Msa0065530-mRNA-1:cds;Parent=Msa0065530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
