Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0065540 | A0A072VGK8 | 81.183 | 372 | 33 | 3 | 1 | 372 | 1 | 335 | 0.0 | 548 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0065540 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0065540 | MtrunA17_Chr1g0169171 | 80.236 | 339 | 30 | 3 | 34 | 372 | 1 | 302 | 7.58e-174 | 486 |
| Msa0065540 | MtrunA17_Chr1g0169081 | 57.412 | 371 | 107 | 5 | 4 | 371 | 1 | 323 | 2.61e-128 | 371 |
| Msa0065540 | MtrunA17_Chr1g0169161 | 68.391 | 174 | 54 | 1 | 198 | 371 | 161 | 333 | 1.11e-82 | 255 |
| Msa0065540 | MtrunA17_Chr3g0125151 | 81.600 | 125 | 21 | 1 | 246 | 370 | 1 | 123 | 4.07e-71 | 218 |
| Msa0065540 | MtrunA17_Chr3g0125161 | 78.788 | 132 | 28 | 0 | 2 | 133 | 13 | 144 | 1.10e-63 | 200 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 74 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGGAATGTTAGTCATAATT+TGG | 0.196366 | 1_2:-28043368 | None:intergenic |
| TATAAATAACATACATGTTT+TGG | 0.264573 | 1_2:-28044216 | None:intergenic |
| ATTTCATCATCTTCAAGATT+TGG | 0.287026 | 1_2:-28044374 | None:intergenic |
| AGGAAGACTTTGAAGAAGTT+AGG | 0.307444 | 1_2:-28043399 | None:intergenic |
| TGCTAAGGGTGCACGTTGTT+AGG | 0.311521 | 1_2:+28045077 | Msa0065540:CDS |
| ACCTTTGGAATATTGAGTTT+TGG | 0.323910 | 1_2:-28042471 | None:intergenic |
| GCATAGAAGTATGGATTTCC+TGG | 0.326303 | 1_2:-28044419 | None:intergenic |
| AGAGAGGAGAAATACGTAAA+TGG | 0.332365 | 1_2:+28044939 | Msa0065540:CDS |
| CACTTCCTCTATGATCTCTT+AGG | 0.351749 | 1_2:-28043683 | None:intergenic |
| TGACAACAGACCAAACATAT+TGG | 0.391564 | 1_2:+28044451 | Msa0065540:CDS |
| AAGAACTAAACCAATATGTT+TGG | 0.413033 | 1_2:-28044461 | None:intergenic |
| TTCAAAACAAAGGCTGTTGA+AGG | 0.442905 | 1_2:+28043653 | Msa0065540:CDS |
| TTGCGGCAATACATGATGAT+AGG | 0.447437 | 1_2:-28044894 | None:intergenic |
| GCTAAGGGTGCACGTTGTTA+GGG | 0.450128 | 1_2:+28045078 | Msa0065540:CDS |
| TACTAATACGATGGAGGATG+AGG | 0.463591 | 1_2:+28043902 | Msa0065540:CDS |
| TACGATGGAGGATGAGGAAG+AGG | 0.464381 | 1_2:+28043908 | Msa0065540:CDS |
| CCTTGCAGTGGCAACATACA+AGG | 0.465539 | 1_2:-28044722 | None:intergenic |
| GAAAATCAATTGAAATGCTA+AGG | 0.471162 | 1_2:+28045062 | Msa0065540:CDS |
| AATAAAGTTTGTTGCCGATA+GGG | 0.473847 | 1_2:-28043725 | None:intergenic |
| GGAAGACTTTGAAGAAGTTA+GGG | 0.478785 | 1_2:-28043398 | None:intergenic |
| CATGTCAAAGTGCGCCCTAT+CGG | 0.483624 | 1_2:+28043711 | Msa0065540:CDS |
| AAGAAGTTAGGGAACTCCTT+GGG | 0.485576 | 1_2:-28043387 | None:intergenic |
| CACACATTGAGGATAGTTCA+AGG | 0.489279 | 1_2:-28043848 | None:intergenic |
| GAAGAAGTTAGGGAACTCCT+TGG | 0.493074 | 1_2:-28043388 | None:intergenic |
| GATATTGGTTTAGGGAGCAT+TGG | 0.500691 | 1_2:+28044335 | Msa0065540:intron |
| GAGGATGAGGAAGAGGAAGA+TGG | 0.501826 | 1_2:+28043915 | Msa0065540:CDS |
| GAGATCATAGAGGAAGTGAT+TGG | 0.510228 | 1_2:+28043688 | Msa0065540:CDS |
| AAAGAAGCACTCTGATAGAA+TGG | 0.512843 | 1_2:+28043425 | Msa0065540:CDS |
| AGGAATAAAGGAGATGGAAA+GGG | 0.516562 | 1_2:+28044155 | Msa0065540:CDS |
| CGATGACATTGATGAGGAGA+AGG | 0.528321 | 1_2:+28044007 | Msa0065540:CDS |
| AAGGAATAAAGGAGATGGAA+AGG | 0.528969 | 1_2:+28044154 | Msa0065540:CDS |
| ATCAGCTTCACAAAAGCCGT+TGG | 0.529706 | 1_2:-28043627 | None:intergenic |
| GAAATACGTAAATGGAAAGA+TGG | 0.532076 | 1_2:+28044947 | Msa0065540:CDS |
| GCCGAGTATTTGTGCGAGGG+TGG | 0.540995 | 1_2:+28044969 | Msa0065540:CDS |
| CCCACCCTCGCACAAATACT+CGG | 0.548148 | 1_2:-28044970 | None:intergenic |
| CGATGATGTTGATGAGGAGG+AGG | 0.548787 | 1_2:+28044097 | Msa0065540:CDS |
| TCAGCTTCACAAAAGCCGTT+GGG | 0.551363 | 1_2:-28043626 | None:intergenic |
| GCTGAAATGTATATTCAGCC+AGG | 0.552692 | 1_2:+28044401 | Msa0065540:CDS |
| TATCAGAGTGCTTCTTTGTG+AGG | 0.557625 | 1_2:-28043419 | None:intergenic |
| AAATAAAGTTTGTTGCCGAT+AGG | 0.559250 | 1_2:-28043726 | None:intergenic |
| AAAGATGAAGGTGATGGACG+AGG | 0.565087 | 1_2:+28043872 | Msa0065540:CDS |
| CTCAATGTGTGAAAAGATGA+AGG | 0.571790 | 1_2:+28043860 | Msa0065540:CDS |
| TATTTCGAAGAATGTCATCA+AGG | 0.573351 | 1_2:+28044668 | Msa0065540:CDS |
| TGTGAACTTGTGTTGCATGA+AGG | 0.573986 | 1_2:+28045040 | Msa0065540:CDS |
| CCTTGTATGTTGCCACTGCA+AGG | 0.576526 | 1_2:+28044722 | Msa0065540:CDS |
| GGAGGAAAATACTAATACGA+TGG | 0.576880 | 1_2:+28043893 | Msa0065540:CDS |
| CATTGATGAGGAGAAGGATG+AGG | 0.577439 | 1_2:+28044013 | Msa0065540:CDS |
| AAAATCAATTGAAATGCTAA+GGG | 0.582870 | 1_2:+28045063 | Msa0065540:CDS |
| TCACAGGATGTTCAAAGTAA+CGG | 0.587767 | 1_2:+28044863 | Msa0065540:intron |
| ATGGTAGATGAAGAAGAAGA+TGG | 0.592976 | 1_2:+28044065 | Msa0065540:CDS |
| TGATGATTACACAATGGTAG+AGG | 0.597750 | 1_2:+28043965 | Msa0065540:CDS |
| AGCTGATGCTTTCAAAACAA+AGG | 0.597947 | 1_2:+28043643 | Msa0065540:CDS |
| CCGAGTATTTGTGCGAGGGT+GGG | 0.600057 | 1_2:+28044970 | Msa0065540:CDS |
| ACAAAACATATTGAAAAGAG+AGG | 0.601836 | 1_2:+28044923 | Msa0065540:CDS |
| TCTGCTGCAGCTTATCCCAA+CGG | 0.606121 | 1_2:+28043611 | Msa0065540:intron |
| TTTCAATGTGTGTGAAAACA+AGG | 0.612200 | 1_2:-28043803 | None:intergenic |
| TAAGGAAGATGCAGATGCTG+AGG | 0.615464 | 1_2:-28042445 | None:intergenic |
| ACCAAAACTCAATATTCCAA+AGG | 0.616253 | 1_2:+28042470 | Msa0065540:five_prime_UTR |
| GGAAAATACTAATACGATGG+AGG | 0.618407 | 1_2:+28043896 | Msa0065540:CDS |
| ATAACAATTATACCTTGCAG+TGG | 0.625581 | 1_2:-28044734 | None:intergenic |
| AAGGAAGATGCAGATGCTGA+GGG | 0.629715 | 1_2:-28042444 | None:intergenic |
| TAACGATGATGTTGATGAGG+AGG | 0.631678 | 1_2:+28044094 | Msa0065540:CDS |
| TTTATCCTAAGAGATCATAG+AGG | 0.632452 | 1_2:+28043678 | Msa0065540:CDS |
| TGATAACGATGATGTTGATG+AGG | 0.638893 | 1_2:+28044091 | Msa0065540:CDS |
| GATGAAGGTGATGGACGAGG+AGG | 0.642889 | 1_2:+28043875 | Msa0065540:CDS |
| GTGTGAAAAGATGAAGGTGA+TGG | 0.648653 | 1_2:+28043866 | Msa0065540:CDS |
| GATGGCCGAGTATTTGTGCG+AGG | 0.649148 | 1_2:+28044965 | Msa0065540:CDS |
| ATGGCCGAGTATTTGTGCGA+GGG | 0.662338 | 1_2:+28044966 | Msa0065540:CDS |
| AATTATGACTAACATTCCCA+AGG | 0.667042 | 1_2:+28043371 | Msa0065540:exon |
| CTTGCAGTGGCAACATACAA+GGG | 0.670891 | 1_2:-28044721 | None:intergenic |
| ACAATGGTAGAGGAAGAAGA+TGG | 0.676224 | 1_2:+28043975 | Msa0065540:CDS |
| TGATAACGATGACATTGATG+AGG | 0.717721 | 1_2:+28044001 | Msa0065540:CDS |
| TGATGATGATGATTACACAA+TGG | 0.769323 | 1_2:+28043959 | Msa0065540:CDS |
| TGATGATGATGATTACACAA+TGG | 0.769323 | 1_2:+28044046 | Msa0065540:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATAATAATGAAAGAAAAA+AGG | + | chr1_2:28044135-28044154 | Msa0065540:CDS | 10.0% |
| !!! | AATATTTTGAAATTTACCTT+TGG | - | chr1_2:28042489-28042508 | None:intergenic | 15.0% |
| !!! | ACATTAATTTGAAATTATGT+TGG | + | chr1_2:28043105-28043124 | Msa0065540:intron | 15.0% |
| !! | ATTCAATTCTTAAATTCATT+TGG | - | chr1_2:28043268-28043287 | None:intergenic | 15.0% |
| !! | TTTCTCAAAATTAACAATAA+TGG | + | chr1_2:28043323-28043342 | Msa0065540:intron | 15.0% |
| !! | TAATGTATAATAATATTTGG+AGG | - | chr1_2:28043477-28043496 | None:intergenic | 15.0% |
| !!! | TATAAATAACATACATGTTT+TGG | - | chr1_2:28044219-28044238 | None:intergenic | 15.0% |
| !! | TATTGTCTTAACAGTATTAT+AGG | + | chr1_2:28042999-28043018 | Msa0065540:intron | 20.0% |
| !!! | GTTTTTTTTTATCAATGTGA+AGG | - | chr1_2:28043204-28043223 | None:intergenic | 20.0% |
| !! | AAAATTAACAATAATGGTGT+TGG | + | chr1_2:28043329-28043348 | Msa0065540:intron | 20.0% |
| !!! | AACAAACTTTATTTTGATGA+TGG | + | chr1_2:28043735-28043754 | Msa0065540:CDS | 20.0% |
| !! | ATGAAAGAAAAAAGGAATAA+AGG | + | chr1_2:28044143-28044162 | Msa0065540:CDS | 20.0% |
| !! | ATTTACCTAATGATTGATAT+TGG | + | chr1_2:28044320-28044339 | Msa0065540:intron | 20.0% |
| !!! | TAATGATTGATATTGGTTTA+GGG | + | chr1_2:28044327-28044346 | Msa0065540:intron | 20.0% |
| !! | AAAATCAATTGAAATGCTAA+GGG | + | chr1_2:28045063-28045082 | Msa0065540:CDS | 20.0% |
| !!! | AATATTGAGTTTTGGTGTTA+AGG | - | chr1_2:28042466-28042485 | None:intergenic | 25.0% |
| ! | ACATAACCTCTTAATTTACA+TGG | + | chr1_2:28042517-28042536 | Msa0065540:intron | 25.0% |
| ! | AAGTAAAGTTGCAAAGAAAT+AGG | - | chr1_2:28042554-28042573 | None:intergenic | 25.0% |
| ! | TTCTTCTTGTTCACTAATTA+AGG | + | chr1_2:28042634-28042653 | Msa0065540:intron | 25.0% |
| ! | AGTAGCAAATCAACAAAATA+AGG | - | chr1_2:28042783-28042802 | None:intergenic | 25.0% |
| !!! | GAAATTATGTTGGTTTGTTT+TGG | + | chr1_2:28043115-28043134 | Msa0065540:intron | 25.0% |
| ! | TTAGTCATAATTTGGTTATC+TGG | - | chr1_2:28043363-28043382 | None:intergenic | 25.0% |
| !!! | AACTTTATTTTGATGATGGT+TGG | + | chr1_2:28043739-28043758 | Msa0065540:CDS | 25.0% |
| ! | TATCATAATAGAGAAGAAGA+AGG | + | chr1_2:28044237-28044256 | Msa0065540:intron | 25.0% |
| ! | CTAAACCAATATCAATCATT+AGG | - | chr1_2:28044328-28044347 | None:intergenic | 25.0% |
| !!! | CTAATGATTGATATTGGTTT+AGG | + | chr1_2:28044326-28044345 | Msa0065540:intron | 25.0% |
| ! | ATTTCATCATCTTCAAGATT+TGG | - | chr1_2:28044377-28044396 | None:intergenic | 25.0% |
| !!! | TATTGTTTTGCATAGAAGTA+TGG | - | chr1_2:28044431-28044450 | None:intergenic | 25.0% |
| ! | AAGAACTAAACCAATATGTT+TGG | - | chr1_2:28044464-28044483 | None:intergenic | 25.0% |
| !! | AGTAATTAGTCCATTTTCTT+AGG | + | chr1_2:28044569-28044588 | Msa0065540:intron | 25.0% |
| !! | TGATATGTTTTGTAAAGCAA+AGG | - | chr1_2:28044701-28044720 | None:intergenic | 25.0% |
| !! | GAAGTGAAGTACAATTTTAT+TGG | + | chr1_2:28044790-28044809 | Msa0065540:intron | 25.0% |
| ! | ACAAAACATATTGAAAAGAG+AGG | + | chr1_2:28044923-28044942 | Msa0065540:CDS | 25.0% |
| ! | GAAAATCAATTGAAATGCTA+AGG | + | chr1_2:28045062-28045081 | Msa0065540:CDS | 25.0% |
| ACCAAAACTCAATATTCCAA+AGG | + | chr1_2:28042470-28042489 | Msa0065540:five_prime_UTR | 30.0% | |
| !!! | ACCTTTGGAATATTGAGTTT+TGG | - | chr1_2:28042474-28042493 | None:intergenic | 30.0% |
| AACAGACCATGTAAATTAAG+AGG | - | chr1_2:28042526-28042545 | None:intergenic | 30.0% | |
| ! | TTACTTCCATTTTCTTCACA+AGG | + | chr1_2:28042568-28042587 | Msa0065540:intron | 30.0% |
| CATTTACCTTGTGAAGAAAA+TGG | - | chr1_2:28042577-28042596 | None:intergenic | 30.0% | |
| GTGAACAAGAAGAAATAAAG+AGG | - | chr1_2:28042628-28042647 | None:intergenic | 30.0% | |
| AGAACAAAATGTATGTTGGA+AGG | - | chr1_2:28042669-28042688 | None:intergenic | 30.0% | |
| AGGAAGAACAAAATGTATGT+TGG | - | chr1_2:28042673-28042692 | None:intergenic | 30.0% | |
| TGATGTATTGAAGTGAGAAA+AGG | - | chr1_2:28042693-28042712 | None:intergenic | 30.0% | |
| TATTATGAGAAACACTTGTG+TGG | + | chr1_2:28042803-28042822 | Msa0065540:intron | 30.0% | |
| ATAAGTGAGAAAATCTTGTG+TGG | - | chr1_2:28042979-28042998 | None:intergenic | 30.0% | |
| TGGGAATGTTAGTCATAATT+TGG | - | chr1_2:28043371-28043390 | None:intergenic | 30.0% | |
| AATTATGACTAACATTCCCA+AGG | + | chr1_2:28043371-28043390 | Msa0065540:exon | 30.0% | |
| TTTATCCTAAGAGATCATAG+AGG | + | chr1_2:28043678-28043697 | Msa0065540:CDS | 30.0% | |
| !! | AATAAAGTTTGTTGCCGATA+GGG | - | chr1_2:28043728-28043747 | None:intergenic | 30.0% |
| !! | AAATAAAGTTTGTTGCCGAT+AGG | - | chr1_2:28043729-28043748 | None:intergenic | 30.0% |
| TTTCAATGTGTGTGAAAACA+AGG | - | chr1_2:28043806-28043825 | None:intergenic | 30.0% | |
| ! | TGATGATGATGATTACACAA+TGG | + | chr1_2:28043959-28043978 | Msa0065540:CDS | 30.0% |
| ! | TGATGATGATGATTACACAA+TGG | + | chr1_2:28043959-28043978 | Msa0065540:CDS | 30.0% |
| GAAAAAAGGAATAAAGGAGA+TGG | + | chr1_2:28044149-28044168 | Msa0065540:CDS | 30.0% | |
| TATTTCGAAGAATGTCATCA+AGG | + | chr1_2:28044668-28044687 | Msa0065540:CDS | 30.0% | |
| ATAACAATTATACCTTGCAG+TGG | - | chr1_2:28044737-28044756 | None:intergenic | 30.0% | |
| ! | ATATGTTTTGTGCTCATTTG+CGG | - | chr1_2:28044914-28044933 | None:intergenic | 30.0% |
| GAAATACGTAAATGGAAAGA+TGG | + | chr1_2:28044947-28044966 | Msa0065540:CDS | 30.0% | |
| AATGTATGTTGGAAGGTTCT+AGG | - | chr1_2:28042662-28042681 | None:intergenic | 35.0% | |
| AAGAGAGAAGAGAGAGAAAA+TGG | - | chr1_2:28042900-28042919 | None:intergenic | 35.0% | |
| TGTGAATAGCATTATAGCTG+TGG | + | chr1_2:28043042-28043061 | Msa0065540:intron | 35.0% | |
| GTGAATAGCATTATAGCTGT+GGG | + | chr1_2:28043043-28043062 | Msa0065540:intron | 35.0% | |
| TGAATAGCATTATAGCTGTG+GGG | + | chr1_2:28043044-28043063 | Msa0065540:intron | 35.0% | |
| ! | GGAAGACTTTGAAGAAGTTA+GGG | - | chr1_2:28043401-28043420 | None:intergenic | 35.0% |
| ! | AGGAAGACTTTGAAGAAGTT+AGG | - | chr1_2:28043402-28043421 | None:intergenic | 35.0% |
| !! | AAAGAAGCACTCTGATAGAA+TGG | + | chr1_2:28043425-28043444 | Msa0065540:CDS | 35.0% |
| AGCTGATGCTTTCAAAACAA+AGG | + | chr1_2:28043643-28043662 | Msa0065540:CDS | 35.0% | |
| TTCAAAACAAAGGCTGTTGA+AGG | + | chr1_2:28043653-28043672 | Msa0065540:CDS | 35.0% | |
| ! | CTTCATCTTTTCACACATTG+AGG | - | chr1_2:28043862-28043881 | None:intergenic | 35.0% |
| CTCAATGTGTGAAAAGATGA+AGG | + | chr1_2:28043860-28043879 | Msa0065540:CDS | 35.0% | |
| GGAGGAAAATACTAATACGA+TGG | + | chr1_2:28043893-28043912 | Msa0065540:CDS | 35.0% | |
| GGAAAATACTAATACGATGG+AGG | + | chr1_2:28043896-28043915 | Msa0065540:CDS | 35.0% | |
| TGATGATTACACAATGGTAG+AGG | + | chr1_2:28043965-28043984 | Msa0065540:CDS | 35.0% | |
| ! | TGATAACGATGACATTGATG+AGG | + | chr1_2:28044001-28044020 | Msa0065540:CDS | 35.0% |
| ATGGTAGATGAAGAAGAAGA+TGG | + | chr1_2:28044065-28044084 | Msa0065540:CDS | 35.0% | |
| ! | TGATAACGATGATGTTGATG+AGG | + | chr1_2:28044091-28044110 | Msa0065540:CDS | 35.0% |
| AAGGAATAAAGGAGATGGAA+AGG | + | chr1_2:28044154-28044173 | Msa0065540:CDS | 35.0% | |
| AGGAATAAAGGAGATGGAAA+GGG | + | chr1_2:28044155-28044174 | Msa0065540:CDS | 35.0% | |
| TGACAACAGACCAAACATAT+TGG | + | chr1_2:28044451-28044470 | Msa0065540:CDS | 35.0% | |
| TCACAGGATGTTCAAAGTAA+CGG | + | chr1_2:28044863-28044882 | Msa0065540:intron | 35.0% | |
| AGAGAGGAGAAATACGTAAA+TGG | + | chr1_2:28044939-28044958 | Msa0065540:CDS | 35.0% | |
| TGTGACCAAGCCAAAATTCT+TGG | - | chr1_2:28042836-28042855 | None:intergenic | 40.0% | |
| GTATTGCTAAACCTACACCT+TGG | - | chr1_2:28043070-28043089 | None:intergenic | 40.0% | |
| !! | ACTTTTTCCAGCACTAGCAT+TGG | - | chr1_2:28043158-28043177 | None:intergenic | 40.0% |
| AAGAAGTTAGGGAACTCCTT+GGG | - | chr1_2:28043390-28043409 | None:intergenic | 40.0% | |
| ! | TATCAGAGTGCTTCTTTGTG+AGG | - | chr1_2:28043422-28043441 | None:intergenic | 40.0% |
| CACTTCCTCTATGATCTCTT+AGG | - | chr1_2:28043686-28043705 | None:intergenic | 40.0% | |
| GAGATCATAGAGGAAGTGAT+TGG | + | chr1_2:28043688-28043707 | Msa0065540:CDS | 40.0% | |
| CACACATTGAGGATAGTTCA+AGG | - | chr1_2:28043851-28043870 | None:intergenic | 40.0% | |
| GTGTGAAAAGATGAAGGTGA+TGG | + | chr1_2:28043866-28043885 | Msa0065540:CDS | 40.0% | |
| TACTAATACGATGGAGGATG+AGG | + | chr1_2:28043902-28043921 | Msa0065540:CDS | 40.0% | |
| ACAATGGTAGAGGAAGAAGA+TGG | + | chr1_2:28043975-28043994 | Msa0065540:CDS | 40.0% | |
| ! | TAACGATGATGTTGATGAGG+AGG | + | chr1_2:28044094-28044113 | Msa0065540:CDS | 40.0% |
| !! | GATATTGGTTTAGGGAGCAT+TGG | + | chr1_2:28044335-28044354 | Msa0065540:intron | 40.0% |
| GCTGAAATGTATATTCAGCC+AGG | + | chr1_2:28044401-28044420 | Msa0065540:CDS | 40.0% | |
| ! | GCATAGAAGTATGGATTTCC+TGG | - | chr1_2:28044422-28044441 | None:intergenic | 40.0% |
| ! | TAGTCCATTTTCTTAGGCCT+AGG | + | chr1_2:28044575-28044594 | Msa0065540:intron | 40.0% |
| ! | AGTCCATTTTCTTAGGCCTA+GGG | + | chr1_2:28044576-28044595 | Msa0065540:intron | 40.0% |
| TTCATCCTTTCTGTCATCAC+AGG | + | chr1_2:28044847-28044866 | Msa0065540:intron | 40.0% | |
| AACATCCTGTGATGACAGAA+AGG | - | chr1_2:28044855-28044874 | None:intergenic | 40.0% | |
| TTGCGGCAATACATGATGAT+AGG | - | chr1_2:28044897-28044916 | None:intergenic | 40.0% | |
| TGTGAACTTGTGTTGCATGA+AGG | + | chr1_2:28045040-28045059 | Msa0065540:CDS | 40.0% | |
| ! | TGGACCAGGACCAAGAATTT+TGG | + | chr1_2:28042823-28042842 | Msa0065540:intron | 45.0% |
| CAAGCCAAAATTCTTGGTCC+TGG | - | chr1_2:28042830-28042849 | None:intergenic | 45.0% | |
| !!! | CAGGACCAAGAATTTTGGCT+TGG | + | chr1_2:28042828-28042847 | Msa0065540:intron | 45.0% |
| GAGAGAAGAGAAGAGAGAGA+AGG | - | chr1_2:28042873-28042892 | None:intergenic | 45.0% | |
| GAGAAAATCTTGTGTGGTCC+TGG | - | chr1_2:28042973-28042992 | None:intergenic | 45.0% | |
| GAAGAAGTTAGGGAACTCCT+TGG | - | chr1_2:28043391-28043410 | None:intergenic | 45.0% | |
| TCAGCTTCACAAAAGCCGTT+GGG | - | chr1_2:28043629-28043648 | None:intergenic | 45.0% | |
| ATCAGCTTCACAAAAGCCGT+TGG | - | chr1_2:28043630-28043649 | None:intergenic | 45.0% | |
| !! | AAAGATGAAGGTGATGGACG+AGG | + | chr1_2:28043872-28043891 | Msa0065540:CDS | 45.0% |
| CGATGACATTGATGAGGAGA+AGG | + | chr1_2:28044007-28044026 | Msa0065540:CDS | 45.0% | |
| CATTGATGAGGAGAAGGATG+AGG | + | chr1_2:28044013-28044032 | Msa0065540:CDS | 45.0% | |
| TCACCCTAGGCCTAAGAAAA+TGG | - | chr1_2:28044582-28044601 | None:intergenic | 45.0% | |
| ! | ATTTTCTTAGGCCTAGGGTG+AGG | + | chr1_2:28044581-28044600 | Msa0065540:intron | 45.0% |
| ACCAATTTCATCCTCACCCT+AGG | - | chr1_2:28044595-28044614 | None:intergenic | 45.0% | |
| CTTGCAGTGGCAACATACAA+GGG | - | chr1_2:28044724-28044743 | None:intergenic | 45.0% | |
| !! | AAATAATGTATAATAATATT+TGG | - | chr1_2:28043480-28043499 | None:intergenic | 5.0% |
| GAGAAACACTTGTGTGGACC+AGG | + | chr1_2:28042809-28042828 | Msa0065540:intron | 50.0% | |
| GTGACCAAAGACCACTTGTG+TGG | + | chr1_2:28042946-28042965 | Msa0065540:intron | 50.0% | |
| TGGTCCACACAAGTGGTCTT+TGG | - | chr1_2:28042953-28042972 | None:intergenic | 50.0% | |
| AAAGACCACTTGTGTGGACC+AGG | + | chr1_2:28042952-28042971 | Msa0065540:intron | 50.0% | |
| ! | CCAGCACTAGCATTGGAACA+AGG | - | chr1_2:28043151-28043170 | None:intergenic | 50.0% |
| CCTTGTTCCAATGCTAGTGC+TGG | + | chr1_2:28043148-28043167 | Msa0065540:intron | 50.0% | |
| TCTGCTGCAGCTTATCCCAA+CGG | + | chr1_2:28043611-28043630 | Msa0065540:intron | 50.0% | |
| CATGTCAAAGTGCGCCCTAT+CGG | + | chr1_2:28043711-28043730 | Msa0065540:CDS | 50.0% | |
| TACGATGGAGGATGAGGAAG+AGG | + | chr1_2:28043908-28043927 | Msa0065540:CDS | 50.0% | |
| GAGGATGAGGAAGAGGAAGA+TGG | + | chr1_2:28043915-28043934 | Msa0065540:CDS | 50.0% | |
| ! | CGATGATGTTGATGAGGAGG+AGG | + | chr1_2:28044097-28044116 | Msa0065540:CDS | 50.0% |
| GCCTAGGGTGAGGATGAAAT+TGG | + | chr1_2:28044591-28044610 | Msa0065540:intron | 50.0% | |
| CCTTGCAGTGGCAACATACA+AGG | - | chr1_2:28044725-28044744 | None:intergenic | 50.0% | |
| CCTTGTATGTTGCCACTGCA+AGG | + | chr1_2:28044722-28044741 | Msa0065540:CDS | 50.0% | |
| ATGGCCGAGTATTTGTGCGA+GGG | + | chr1_2:28044966-28044985 | Msa0065540:CDS | 50.0% | |
| ! | TGCTAAGGGTGCACGTTGTT+AGG | + | chr1_2:28045077-28045096 | Msa0065540:CDS | 50.0% |
| ! | GCTAAGGGTGCACGTTGTTA+GGG | + | chr1_2:28045078-28045097 | Msa0065540:CDS | 50.0% |
| GCATTATAGCTGTGGGGCCA+AGG | + | chr1_2:28043050-28043069 | Msa0065540:intron | 55.0% | |
| !! | GATGAAGGTGATGGACGAGG+AGG | + | chr1_2:28043875-28043894 | Msa0065540:CDS | 55.0% |
| GATGGCCGAGTATTTGTGCG+AGG | + | chr1_2:28044965-28044984 | Msa0065540:CDS | 55.0% | |
| CCCACCCTCGCACAAATACT+CGG | - | chr1_2:28044973-28044992 | None:intergenic | 55.0% | |
| CCGAGTATTTGTGCGAGGGT+GGG | + | chr1_2:28044970-28044989 | Msa0065540:CDS | 55.0% | |
| GTGGTCCTGGTCCACACAAG+TGG | - | chr1_2:28042960-28042979 | None:intergenic | 60.0% | |
| TAGCTGTGGGGCCAAGGTGT+AGG | + | chr1_2:28043056-28043075 | Msa0065540:intron | 60.0% | |
| GCCGAGTATTTGTGCGAGGG+TGG | + | chr1_2:28044969-28044988 | Msa0065540:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 28042447 | 28045108 | 28042447 | ID=Msa0065540;Name=Msa0065540 |
| chr1_2 | mRNA | 28042447 | 28045108 | 28042447 | ID=Msa0065540-mRNA-1;Parent=Msa0065540;Name=Msa0065540-mRNA-1;_AED=0.13;_eAED=0.15;_QI=56|0.4|0.33|1|0.8|0.83|6|0|372 |
| chr1_2 | exon | 28042447 | 28042491 | 28042447 | ID=Msa0065540-mRNA-1:exon:9634;Parent=Msa0065540-mRNA-1 |
| chr1_2 | exon | 28043364 | 28043446 | 28043364 | ID=Msa0065540-mRNA-1:exon:9635;Parent=Msa0065540-mRNA-1 |
| chr1_2 | exon | 28043621 | 28044224 | 28043621 | ID=Msa0065540-mRNA-1:exon:9636;Parent=Msa0065540-mRNA-1 |
| chr1_2 | exon | 28044348 | 28044472 | 28044348 | ID=Msa0065540-mRNA-1:exon:9637;Parent=Msa0065540-mRNA-1 |
| chr1_2 | exon | 28044666 | 28044743 | 28044666 | ID=Msa0065540-mRNA-1:exon:9638;Parent=Msa0065540-mRNA-1 |
| chr1_2 | exon | 28044869 | 28045108 | 28044869 | ID=Msa0065540-mRNA-1:exon:9639;Parent=Msa0065540-mRNA-1 |
| chr1_2 | five_prime_UTR | 28042447 | 28042491 | 28042447 | ID=Msa0065540-mRNA-1:five_prime_utr;Parent=Msa0065540-mRNA-1 |
| chr1_2 | five_prime_UTR | 28043364 | 28043374 | 28043364 | ID=Msa0065540-mRNA-1:five_prime_utr;Parent=Msa0065540-mRNA-1 |
| chr1_2 | CDS | 28043375 | 28043446 | 28043375 | ID=Msa0065540-mRNA-1:cds;Parent=Msa0065540-mRNA-1 |
| chr1_2 | CDS | 28043621 | 28044224 | 28043621 | ID=Msa0065540-mRNA-1:cds;Parent=Msa0065540-mRNA-1 |
| chr1_2 | CDS | 28044348 | 28044472 | 28044348 | ID=Msa0065540-mRNA-1:cds;Parent=Msa0065540-mRNA-1 |
| chr1_2 | CDS | 28044666 | 28044743 | 28044666 | ID=Msa0065540-mRNA-1:cds;Parent=Msa0065540-mRNA-1 |
| chr1_2 | CDS | 28044869 | 28045108 | 28044869 | ID=Msa0065540-mRNA-1:cds;Parent=Msa0065540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
