AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0065710

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0065710 MtrunA17_Chr1g0169561 88.217 314 37 0 165 478 1 314 0.0 546
Msa0065710 MtrunA17_Chr1g0169521 87.302 315 40 0 165 479 1 315 0.0 537
Msa0065710 MtrunA17_Chr1g0174001 75.258 194 35 2 299 479 1 194 3.08e-92 284
Msa0065710 MtrunA17_Chr7g0214511 55.967 243 81 8 250 480 59 287 2.84e-61 206
Msa0065710 MtrunA17_Chr3g0141851 59.559 136 51 2 1 132 1 136 6.54e-45 167
Msa0065710 MtrunA17_Chr1g0172861 38.024 334 116 14 169 479 12 277 4.19e-38 142
Msa0065710 MtrunA17_Chr1g0174871 35.473 296 136 10 201 480 29 285 3.08e-36 137
Msa0065710 MtrunA17_Chr1g0169471 95.238 63 3 0 76 138 2 64 3.56e-35 129
Msa0065710 MtrunA17_Chr1g0172961 34.767 279 122 10 169 432 12 245 4.92e-30 119
Msa0065710 MtrunA17_Chr1g0180581 38.683 243 59 8 258 497 57 212 3.11e-29 115
Msa0065710 MtrunA17_Chr1g0174861 36.842 247 104 8 227 461 39 245 4.07e-29 116
Msa0065710 MtrunA17_Chr1g0193731 36.667 270 83 9 235 479 16 222 8.44e-28 114
Msa0065710 MtrunA17_Chr1g0169531 72.000 75 20 1 605 679 242 315 1.68e-23 102
Msa0065710 MtrunA17_Chr4g0037041 38.728 173 62 4 177 348 10 139 1.75e-23 98.6
Msa0065710 MtrunA17_Chr7g0273741 43.119 109 53 5 16 118 15 120 1.16e-18 83.6
Msa0065710 MtrunA17_Chr5g0433641 40.367 109 56 3 16 118 15 120 2.36e-17 85.5
Msa0065710 MtrunA17_Chr7g0273721 39.167 120 65 2 16 129 16 133 3.09e-17 85.1
Msa0065710 MtrunA17_Chr1g0165741 38.532 109 58 3 16 118 14 119 8.82e-17 77.8
Msa0065710 MtrunA17_Chr8g0353421 34.862 109 62 3 16 118 14 119 2.97e-16 75.9
Msa0065710 MtrunA17_Chr7g0273781 45.098 102 48 4 16 111 48 147 3.93e-16 81.6
Msa0065710 MtrunA17_Chr7g0273761 40.000 110 56 4 16 118 387 493 4.67e-16 82.4
Msa0065710 MtrunA17_Chr6g0471371 36.697 109 60 3 16 118 14 119 1.29e-15 75.5
Msa0065710 MtrunA17_Chr1g0165711 41.176 102 52 3 16 111 14 113 1.29e-15 79.7
Msa0065710 MtrunA17_Chr7g0273731 38.532 109 58 3 16 118 98 203 1.41e-15 80.1
Msa0065710 MtrunA17_Chr1g0165661 40.196 102 53 2 16 111 14 113 1.84e-15 79.3
Msa0065710 MtrunA17_Chr7g0273791 37.615 109 59 3 16 118 15 120 4.41e-15 78.6
Msa0065710 MtrunA17_Chr3g0098961 37.755 98 53 2 16 107 18 113 4.75e-15 73.9
Msa0065710 MtrunA17_Chr7g0228791 59.701 67 26 1 605 671 167 232 5.04e-15 75.1
Msa0065710 MtrunA17_Chr1g0165671 36.036 111 62 3 16 120 32 139 1.47e-14 76.6
Msa0065710 MtrunA17_Chr3g0113821 42.105 95 48 2 17 105 11 104 2.86e-14 75.5
Msa0065710 MtrunA17_Chr8g0347471 68.627 51 16 0 481 531 33 83 5.81e-13 72.4
Msa0065710 MtrunA17_Chr8g0386141 39.604 101 52 3 16 111 12 108 1.04e-12 70.9
Msa0065710 MtrunA17_Chr1g0165681 34.343 99 57 2 19 111 17 113 1.14e-12 70.9
Msa0065710 MtrunA17_Chr1g0180571 54.667 75 18 2 400 474 13 71 1.67e-12 65.5
Msa0065710 MtrunA17_Chr5g0448221 30.348 201 94 7 178 374 46 204 4.44e-12 67.0
Msa0065710 MtrunA17_Chr1g0191081 34.314 102 60 2 16 111 23 123 6.48e-12 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0065710 AT1G27620.1 54.676 139 56 3 6 138 3 140 2.43e-36 142
Msa0065710 AT3G03480.1 38.776 98 53 2 19 111 27 122 4.85e-15 78.6
Msa0065710 AT5G17540.1 36.634 101 57 2 16 111 14 112 1.26e-13 74.3
Msa0065710 AT2G40230.1 35.398 113 68 1 18 125 12 124 4.34e-13 72.4
Msa0065710 AT5G57840.1 39.048 105 54 4 19 116 11 112 6.68e-13 72.0

Find 138 sgRNAs with CRISPR-Local

Find 362 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACATTGTTATATATGTCTTA+TGG 0.192869 1_2:+28370789 Msa0065710:CDS
AGCGAAGATGAAACTGAATT+AGG 0.276698 1_2:+28371035 Msa0065710:CDS
CATTGTTATATATGTCTTAT+GGG 0.313934 1_2:+28370790 Msa0065710:CDS
TTTGCTTCCTTAACTGGATC+TGG 0.325182 1_2:+28372604 Msa0065710:CDS
CATCTTCTATGATGCCAAAT+TGG 0.327024 1_2:+28368534 Msa0065710:CDS
TCGTTGAAAATTTACATGTT+AGG 0.328640 1_2:+28372671 Msa0065710:CDS
AACTATAGGGTTTGAACTTA+GGG 0.333626 1_2:-28370116 None:intergenic
AAACTATAGGGTTTGAACTT+AGG 0.336722 1_2:-28370117 None:intergenic
AGGTTGAAGAAGAGTGTTAG+AGG 0.343983 1_2:-28370370 None:intergenic
CAGGAAACCTGAGCTCAATT+TGG 0.348082 1_2:-28368307 None:intergenic
ATTATCATCCACCGTATTGC+TGG 0.360275 1_2:-28370847 None:intergenic
GCACATGGGGTGATGGTCAT+TGG 0.366638 1_2:-28368242 None:intergenic
CGCTAACTAGTCTAGATAAC+TGG 0.374275 1_2:+28373100 Msa0065710:CDS
TTCATGATGTTGTGAGTGTT+TGG 0.378778 1_2:-28370159 None:intergenic
TAACCATACCAACCTGTCTT+TGG 0.384709 1_2:-28372355 None:intergenic
ATCAGCAATACGCCTTCTCC+TGG 0.390025 1_2:-28370736 None:intergenic
GGCACAGGATAGTAACAATC+TGG 0.401567 1_2:-28368218 None:intergenic
GTCTTAAACCTCCCAGCAAA+AGG 0.402724 1_2:-28368413 None:intergenic
GTTATGAGGGATCAACTAAA+AGG 0.407447 1_2:+28370814 Msa0065710:CDS
GCGAAGATGAAACTGAATTA+GGG 0.408376 1_2:+28371036 Msa0065710:CDS
GACTTTGTTCCGAGGAAGAT+GGG 0.414040 1_2:-28370638 None:intergenic
TCTTGATAGTGAACACTTCA+AGG 0.417232 1_2:-28368372 None:intergenic
CACAAGCATAATCATGATGA+TGG 0.420773 1_2:+28370486 Msa0065710:CDS
ACATCTTCCACTTGCAATCC+AGG 0.424093 1_2:+28368589 Msa0065710:CDS
TGTATTACATCATCGGATAC+TGG 0.424534 1_2:+28372902 Msa0065710:CDS
TTGAAGTTGATGAAGGAAGA+AGG 0.426924 1_2:+28373318 Msa0065710:CDS
TCCTTCATCAACTTCAAAAG+TGG 0.428602 1_2:-28373312 None:intergenic
TGATTTGGTGTTGGTGCACA+TGG 0.438228 1_2:-28368257 None:intergenic
TGTTACAAACATCACATGTA+TGG 0.446958 1_2:-28370521 None:intergenic
GAGTATAATGGCAGAGTTGA+TGG 0.454386 1_2:-28373391 None:intergenic
TACTTTGACAAGTCAGTAGA+TGG 0.459060 1_2:-28370675 None:intergenic
AACTGTAGATTCTTGAACCT+GGG 0.459451 1_2:-28370281 None:intergenic
TGAAGTTGATGAAGGAAGAA+GGG 0.460634 1_2:+28373319 Msa0065710:CDS
GGCCCGTCCGCGGCTTATGT+TGG 0.462774 1_2:-28373191 None:intergenic
GTGATGGTCATTGGTGGCAC+AGG 0.470581 1_2:-28368233 None:intergenic
TCATCCAACAGTGCTTTGAA+TGG 0.470969 1_2:+28370552 Msa0065710:CDS
ATCATAAAGGAAGGAGGGGC+GGG 0.472674 1_2:+28373288 Msa0065710:CDS
TGACTTTGTTCCGAGGAAGA+TGG 0.476518 1_2:-28370639 None:intergenic
TTGATGACCAAATTGAGCTC+AGG 0.476868 1_2:+28368300 Msa0065710:CDS
TGTTGGTGCACATGGGGTGA+TGG 0.477515 1_2:-28368249 None:intergenic
TGTAGTGTTTGCTGAGGCTT+CGG 0.477948 1_2:+28368484 Msa0065710:CDS
GATGTGGCAGCGGCAAATGA+AGG 0.484959 1_2:-28373222 None:intergenic
TATGAGATGGCATACTCAAA+AGG 0.486406 1_2:+28370578 Msa0065710:CDS
AAGACATACACATAATTGAC+AGG 0.488469 1_2:-28368326 None:intergenic
CAACTGTAGATTCTTGAACC+TGG 0.492609 1_2:-28370282 None:intergenic
AGGAGGTCCAGATCCAGTTA+AGG 0.494929 1_2:-28372611 None:intergenic
CACTGAGGATGAGAATAAGT+TGG 0.500648 1_2:+28368439 Msa0065710:CDS
CTTTCATGTGCCAGTAACAC+GGG 0.502435 1_2:-28373246 None:intergenic
TACTCAAAAGGGTTCGAAGA+AGG 0.504806 1_2:+28370590 Msa0065710:CDS
GCAAACACACGTGGAACTAA+AGG 0.507051 1_2:+28372952 Msa0065710:CDS
AATTAGGGTCAAGAGTTGTC+AGG 0.507473 1_2:+28371051 Msa0065710:CDS
CGTTATTCACAGCATGATCA+TGG 0.509884 1_2:-28370410 None:intergenic
CTCCAACATAAGCCGCGGAC+GGG 0.512903 1_2:+28373189 Msa0065710:CDS
GTTGGAGTTGAAGAGAGAAA+TGG 0.513195 1_2:-28373173 None:intergenic
TGTCACAAAACATTTACCTC+TGG 0.513939 1_2:+28370312 Msa0065710:CDS
TATCATCTTCAAGAGTCTGT+TGG 0.516591 1_2:-28370251 None:intergenic
ACCGACTGCCCCATCTTCCT+CGG 0.517275 1_2:+28370629 Msa0065710:CDS
CATGATCATGCTGTGAATAA+CGG 0.518528 1_2:+28370411 Msa0065710:CDS
AACAAGGTGTGCTGCTAACA+AGG 0.519240 1_2:+28370883 Msa0065710:CDS
TTACGGAAAGATGATCATAA+AGG 0.520573 1_2:+28373275 Msa0065710:CDS
GTGAGATAGAGAGTGTGATT+TGG 0.523642 1_2:-28368272 None:intergenic
TTGCAGTTGTATTACATCAT+CGG 0.523953 1_2:+28372895 Msa0065710:intron
ATGTTGTGAGTGTTTGGCTC+AGG 0.524271 1_2:-28370153 None:intergenic
ATGAGATGGCATACTCAAAA+GGG 0.526510 1_2:+28370579 Msa0065710:CDS
TGGCCCTTGCAGCATTGTCT+CGG 0.527962 1_2:-28373353 None:intergenic
CGGCAAATGAAGGAGACAAT+GGG 0.529664 1_2:-28373212 None:intergenic
GGATCTAGCTGTGATATTGA+AGG 0.530396 1_2:+28370999 Msa0065710:CDS
ACCTCTGGTAAATCACTTGG+TGG 0.531173 1_2:+28370327 Msa0065710:CDS
AACTGGTTGATGAAAGAAGA+AGG 0.533711 1_2:+28373117 Msa0065710:CDS
GCGGCAAATGAAGGAGACAA+TGG 0.538261 1_2:-28373213 None:intergenic
GATTTGGTGTTGGTGCACAT+GGG 0.542283 1_2:-28368256 None:intergenic
ATTGTTATATATGTCTTATG+GGG 0.542437 1_2:+28370791 Msa0065710:CDS
TCAAACATCGCAAGATTGCA+AGG 0.542865 1_2:+28370968 Msa0065710:CDS
GCAGAAGATTTCCAGCAATA+CGG 0.546299 1_2:+28370836 Msa0065710:CDS
TCAAACGAATGGTGAGAAGA+AGG 0.549246 1_2:-28370198 None:intergenic
AGTATAATGGCAGAGTTGAT+GGG 0.549802 1_2:-28373390 None:intergenic
CTATGATGCCAAATTGGTCA+TGG 0.552983 1_2:+28368540 Msa0065710:CDS
ACTCAAAAGGGTTCGAAGAA+GGG 0.553906 1_2:+28370591 Msa0065710:CDS
AACGATGTGTTTAGGATCTG+TGG 0.555239 1_2:-28372653 None:intergenic
TTGGTCTTATACGAGATTGG+CGG 0.556672 1_2:-28370702 None:intergenic
CATGGGGTGATGGTCATTGG+TGG 0.557487 1_2:-28368239 None:intergenic
TTTACCTCTGGTAAATCACT+TGG 0.558168 1_2:+28370324 Msa0065710:CDS
GTGATAACAATGCCAAAGAC+AGG 0.559186 1_2:+28372343 Msa0065710:CDS
TCTTAAACCTCCCAGCAAAA+GGG 0.559550 1_2:-28368412 None:intergenic
TTCTTCTGTGCGCATAGTTG+CGG 0.560409 1_2:-28373424 None:intergenic
GAAGAAGAGTGTTAGAGGAG+CGG 0.560783 1_2:-28370365 None:intergenic
CAAGATTGCAAGGAACCTGC+AGG 0.562783 1_2:+28370978 Msa0065710:CDS
GCTTTCATGTGCCAGTAACA+CGG 0.565540 1_2:-28373247 None:intergenic
GGCGTTTGTGATGAGTATAA+TGG 0.566058 1_2:-28373403 None:intergenic
ATGTCCATTCAAAGCACTGT+TGG 0.568123 1_2:-28370556 None:intergenic
GGAACGAAACAATTGTGCAT+TGG 0.568868 1_2:+28372923 Msa0065710:CDS
GGATGATAATGAGAAGATGA+AGG 0.579672 1_2:+28370860 Msa0065710:CDS
TAGAGAGTGTGATTTGGTGT+TGG 0.580012 1_2:-28368266 None:intergenic
GATCATAAAGGAAGGAGGGG+CGG 0.581550 1_2:+28373287 Msa0065710:CDS
GCACATGAAAGCAACTGTTA+CGG 0.583291 1_2:+28373258 Msa0065710:CDS
ACAAGCATAATCATGATGAT+GGG 0.583581 1_2:+28370487 Msa0065710:CDS
ATATCACAGCTAGATCCTGC+AGG 0.585006 1_2:-28370993 None:intergenic
GGAGACAATGGGCCCGTCCG+CGG 0.585316 1_2:-28373201 None:intergenic
AAGATGGGGCAGTCGGTGAG+TGG 0.586640 1_2:-28370623 None:intergenic
CAGTTATCTAGACTAGTTAG+CGG 0.589478 1_2:-28373099 None:intergenic
AGACCGAGACAATGCTGCAA+GGG 0.590610 1_2:+28373350 Msa0065710:CDS
ATTTGGTGTTGGTGCACATG+GGG 0.592217 1_2:-28368255 None:intergenic
TCAGCAATACGCCTTCTCCT+GGG 0.592381 1_2:-28370735 None:intergenic
TTGTTATATATGTCTTATGG+GGG 0.593530 1_2:+28370792 Msa0065710:CDS
ACTCCAACATAAGCCGCGGA+CGG 0.595128 1_2:+28373188 Msa0065710:CDS
CTCAAGTTGACTTTGTTCCG+AGG 0.596308 1_2:-28370646 None:intergenic
GAGCTAGATTGCAATGGAGA+AGG 0.598424 1_2:+28368461 Msa0065710:CDS
GATGGGTTTGAGTATACGAA+TGG 0.601049 1_2:-28373373 None:intergenic
GCACAGGATAGTAACAATCT+GGG 0.601337 1_2:-28368217 None:intergenic
TCATCTTCGAAATCATCACT+TGG 0.604104 1_2:-28371095 None:intergenic
AATGAGAAGATGAAGGAACA+AGG 0.607433 1_2:+28370867 Msa0065710:CDS
GGAAAGATGATCATAAAGGA+AGG 0.607936 1_2:+28373279 Msa0065710:CDS
TCCGAGGAAGATGGGGCAGT+CGG 0.608551 1_2:-28370630 None:intergenic
AGATGATCATAAAGGAAGGA+GGG 0.610599 1_2:+28373283 Msa0065710:CDS
TACATGTGATGTTTGTAACA+AGG 0.614171 1_2:+28370524 Msa0065710:CDS
AGTGTTTGCTGAGGCTTCGG+TGG 0.615076 1_2:+28368487 Msa0065710:CDS
TCTGTTGGTGATAATGATCA+TGG 0.616583 1_2:-28370236 None:intergenic
TAGACCGAGACAATGCTGCA+AGG 0.621283 1_2:+28373349 Msa0065710:CDS
GATCTAACCTGGATTGCAAG+TGG 0.621861 1_2:-28368596 None:intergenic
GATGATCATAAAGGAAGGAG+GGG 0.621977 1_2:+28373284 Msa0065710:CDS
TTTCATGTGCCAGTAACACG+GGG 0.624373 1_2:-28373245 None:intergenic
AAGATGATCATAAAGGAAGG+AGG 0.626506 1_2:+28373282 Msa0065710:CDS
GTAACAATCTGGGAGTTCCA+CGG 0.640323 1_2:-28368207 None:intergenic
GCGTATTGCTGATAATGATG+AGG 0.644357 1_2:+28370746 Msa0065710:CDS
TGGAACAAAGCAAACACACG+TGG 0.648192 1_2:+28372943 Msa0065710:CDS
ACTTTGTTCCGAGGAAGATG+GGG 0.648774 1_2:-28370637 None:intergenic
GAAGATTTCCAGCAATACGG+TGG 0.664760 1_2:+28370839 Msa0065710:CDS
CTTCAAGGCATCCATCTCCA+CGG 0.665769 1_2:-28368357 None:intergenic
TTCAACTCCAACATAAGCCG+CGG 0.670868 1_2:+28373184 Msa0065710:CDS
AAGTTGGAGCTAGATTGCAA+TGG 0.677409 1_2:+28368455 Msa0065710:CDS
CTTTGAATGGACATATGAGA+TGG 0.684064 1_2:+28370565 Msa0065710:CDS
AGAAGGTGTAGTGTTTGCTG+AGG 0.698081 1_2:+28368478 Msa0065710:CDS
GATGTGTTTAGGATCTGTGG+TGG 0.708028 1_2:-28372650 None:intergenic
AATGAAATTCAGAAACAACA+AGG 0.709396 1_2:+28370087 Msa0065710:intron
ACCACCAAGTGATTTACCAG+AGG 0.717389 1_2:-28370328 None:intergenic
GATCATGCTGTGAATAACGG+CGG 0.741138 1_2:+28370414 Msa0065710:CDS
TTCATGTGCCAGTAACACGG+GGG 0.779582 1_2:-28373244 None:intergenic
GAGGTTTAAGACTAGCACTG+AGG 0.802811 1_2:+28368424 Msa0065710:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATATACATTTAACATTA+AGG + chr1_2:28369567-28369586 Msa0065710:intron 10.0%
!! AAATATACATTTAACATTAA+GGG + chr1_2:28369568-28369587 Msa0065710:intron 10.0%
!! TTTAATTCAATTGACATTTA+TGG + chr1_2:28368658-28368677 Msa0065710:intron 15.0%
!! AATATACATTTAACATTAAG+GGG + chr1_2:28369569-28369588 Msa0065710:intron 15.0%
!!! NNNNNNNCATTTTACAATTG+AGG - chr1_2:28369851-28369870 None:intergenic 15.0%
!! TTTAGATAACTAAATAAGAT+AGG - chr1_2:28371484-28371503 None:intergenic 15.0%
!! TTTAGTTATCTAAAAATAAC+TGG + chr1_2:28371490-28371509 Msa0065710:intron 15.0%
!!! ATTTTATCTTATGACTATTA+TGG + chr1_2:28371542-28371561 Msa0065710:intron 15.0%
!! TATTCATACAACATATTATT+TGG - chr1_2:28371650-28371669 None:intergenic 15.0%
!! CAAATCAAAGAAATTTGATA+GGG - chr1_2:28368721-28368740 None:intergenic 20.0%
!!! CTATCAAATTTCTTTGATTT+GGG + chr1_2:28368720-28368739 Msa0065710:intron 20.0%
!!! AGAATTGAGTTAGTATTTTT+AGG + chr1_2:28368879-28368898 Msa0065710:intron 20.0%
!!! TATTTTTAGGTCCAAAATTA+GGG + chr1_2:28368892-28368911 Msa0065710:intron 20.0%
!! ATATACATTTAACATTAAGG+GGG + chr1_2:28369570-28369589 Msa0065710:intron 20.0%
!! GAATGATGAAAATAGAAATA+GGG - chr1_2:28370024-28370043 None:intergenic 20.0%
!! TGAATGATGAAAATAGAAAT+AGG - chr1_2:28370025-28370044 None:intergenic 20.0%
!!! TGATATTCATAGTTGTTTTT+GGG - chr1_2:28370060-28370079 None:intergenic 20.0%
!!! ATGATATTCATAGTTGTTTT+TGG - chr1_2:28370061-28370080 None:intergenic 20.0%
!! ACATTGTTATATATGTCTTA+TGG + chr1_2:28370789-28370808 Msa0065710:CDS 20.0%
!! CATTGTTATATATGTCTTAT+GGG + chr1_2:28370790-28370809 Msa0065710:CDS 20.0%
!! ATTGTTATATATGTCTTATG+GGG + chr1_2:28370791-28370810 Msa0065710:CDS 20.0%
!! AAGCTAGTATGAAAATATAA+TGG + chr1_2:28371351-28371370 Msa0065710:intron 20.0%
!!! ATGAAAATATAATGGAATTG+AGG + chr1_2:28371359-28371378 Msa0065710:intron 20.0%
!!! TGAAAATATAATGGAATTGA+GGG + chr1_2:28371360-28371379 Msa0065710:intron 20.0%
!!! ATTAATTGATTTGAATGTAG+AGG + chr1_2:28371519-28371538 Msa0065710:intron 20.0%
!! TTAGCAATCAATTATTTAGA+CGG - chr1_2:28372184-28372203 None:intergenic 20.0%
!! CAATTATGAATGTTACTATT+AGG + chr1_2:28372560-28372579 Msa0065710:intron 20.0%
! CCAAATCAAAGAAATTTGAT+AGG - chr1_2:28368722-28368741 None:intergenic 25.0%
! CCTATCAAATTTCTTTGATT+TGG + chr1_2:28368719-28368738 Msa0065710:intron 25.0%
!!! GTATTTTTAGGTCCAAAATT+AGG + chr1_2:28368891-28368910 Msa0065710:intron 25.0%
!!! TTCATAATCAAAGTATTGCA+TGG - chr1_2:28369065-28369084 None:intergenic 25.0%
!! CGCAATTTAGTTGAAAATTT+TGG + chr1_2:28369754-28369773 Msa0065710:intron 25.0%
!! NCATTTTACAATTGAGGAAA+GGG - chr1_2:28369845-28369864 None:intergenic 25.0%
!! NNCATTTTACAATTGAGGAA+AGG - chr1_2:28369846-28369865 None:intergenic 25.0%
! AATGAAATTCAGAAACAACA+AGG + chr1_2:28370087-28370106 Msa0065710:intron 25.0%
! GAGTGTACAAAAAAACTATA+GGG - chr1_2:28370132-28370151 None:intergenic 25.0%
! TGAGTGTACAAAAAAACTAT+AGG - chr1_2:28370133-28370152 None:intergenic 25.0%
!! AATTTTTGTAGTCTTCTTCA+AGG - chr1_2:28370442-28370461 None:intergenic 25.0%
! AGAAGACTACAAAAATTACT+TGG + chr1_2:28370445-28370464 Msa0065710:CDS 25.0%
! GAAGACTACAAAAATTACTT+GGG + chr1_2:28370446-28370465 Msa0065710:CDS 25.0%
! TTGTTATATATGTCTTATGG+GGG + chr1_2:28370792-28370811 Msa0065710:CDS 25.0%
! GTTTGAAAAATCTTGTCTTT+AGG - chr1_2:28370954-28370973 None:intergenic 25.0%
! CGATGATGATATTATAACTA+AGG - chr1_2:28371214-28371233 None:intergenic 25.0%
!! TATCATCATCGATTATTGAA+CGG + chr1_2:28371223-28371242 Msa0065710:intron 25.0%
! ATGATTAAGACAAACACAAA+AGG - chr1_2:28371292-28371311 None:intergenic 25.0%
! TTACAGCATCTATCTAAATT+TGG - chr1_2:28371872-28371891 None:intergenic 25.0%
! TCATAATTGTATTAACCAGT+TGG + chr1_2:28371924-28371943 Msa0065710:intron 25.0%
!!! AAAAGATCATTGATTTTCCT+CGG - chr1_2:28372066-28372085 None:intergenic 25.0%
!! TCTTGAATCTTTAACACTTT+TGG + chr1_2:28372240-28372259 Msa0065710:intron 25.0%
! GATCTCAAATGAAATAATCA+GGG - chr1_2:28372287-28372306 None:intergenic 25.0%
! AGATCTCAAATGAAATAATC+AGG - chr1_2:28372288-28372307 None:intergenic 25.0%
!! ACATAATTTGCAATGTATGA+AGG + chr1_2:28372321-28372340 Msa0065710:intron 25.0%
! TAGTAACATTCATAATTGAG+AGG - chr1_2:28372558-28372577 None:intergenic 25.0%
!! AAATTTTCAACGATGTGTTT+AGG - chr1_2:28372664-28372683 None:intergenic 25.0%
! TCGTTGAAAATTTACATGTT+AGG + chr1_2:28372671-28372690 Msa0065710:CDS 25.0%
! AATTAGACTCAATAGCTAAT+TGG - chr1_2:28372759-28372778 None:intergenic 25.0%
! TAATACAACTGCAACATATA+TGG - chr1_2:28372889-28372908 None:intergenic 25.0%
AAGACATACACATAATTGAC+AGG - chr1_2:28368329-28368348 None:intergenic 30.0%
! ATCTTTTTCCATGACCAATT+TGG - chr1_2:28368551-28368570 None:intergenic 30.0%
ATGGAAAAAGATTGAGTGTA+AGG + chr1_2:28368559-28368578 Msa0065710:CDS 30.0%
TCAAAGAAATTTGATAGGGT+TGG - chr1_2:28368717-28368736 None:intergenic 30.0%
! TAGCTGTTATACCCTAATTT+TGG - chr1_2:28368906-28368925 None:intergenic 30.0%
GGACAAAGAAACTTAAATAG+GGG - chr1_2:28368929-28368948 None:intergenic 30.0%
CGGACAAAGAAACTTAAATA+GGG - chr1_2:28368930-28368949 None:intergenic 30.0%
! CCTATTTAAGTTTCTTTGTC+CGG + chr1_2:28368928-28368947 Msa0065710:intron 30.0%
! ATTAACATTTGCACTGCTTT+TGG + chr1_2:28369000-28369019 Msa0065710:intron 30.0%
!!! ATCTCTTGTTTTGTATTCCT+TGG - chr1_2:28369220-28369239 None:intergenic 30.0%
AGGAATACAAAACAAGAGAT+AGG + chr1_2:28369220-28369239 Msa0065710:intron 30.0%
GATTGAAGATACAAACAGAT+AGG + chr1_2:28369336-28369355 Msa0065710:intron 30.0%
!! TTTTTGTGCTGATGTGAAAA+AGG - chr1_2:28369599-28369618 None:intergenic 30.0%
TCAGTTGACATAAGTAAATG+AGG + chr1_2:28369657-28369676 Msa0065710:intron 30.0%
CAGTTGACATAAGTAAATGA+GGG + chr1_2:28369658-28369677 Msa0065710:intron 30.0%
AGTTGACATAAGTAAATGAG+GGG + chr1_2:28369659-28369678 Msa0065710:intron 30.0%
TGTAAATGCTATCTGCTATT+AGG - chr1_2:28369689-28369708 None:intergenic 30.0%
!!! GCTAATTTTTTTCACATCAG+TGG + chr1_2:28369776-28369795 Msa0065710:intron 30.0%
AACTATAGGGTTTGAACTTA+GGG - chr1_2:28370119-28370138 None:intergenic 30.0%
AAACTATAGGGTTTGAACTT+AGG - chr1_2:28370120-28370139 None:intergenic 30.0%
!!! TTTTGGGTTTATCAAACGAA+TGG - chr1_2:28370212-28370231 None:intergenic 30.0%
!!! TAATGATCATGGCTGTTTTT+GGG - chr1_2:28370228-28370247 None:intergenic 30.0%
!! ATAATGATCATGGCTGTTTT+TGG - chr1_2:28370229-28370248 None:intergenic 30.0%
!! TGGATCTGTTTGTTTGTTTT+AGG - chr1_2:28370393-28370412 None:intergenic 30.0%
ACAAGCATAATCATGATGAT+GGG + chr1_2:28370487-28370506 Msa0065710:CDS 30.0%
TGTTACAAACATCACATGTA+TGG - chr1_2:28370524-28370543 None:intergenic 30.0%
TACATGTGATGTTTGTAACA+AGG + chr1_2:28370524-28370543 Msa0065710:CDS 30.0%
!!! TTTTTGGTCTTATACGAGAT+TGG - chr1_2:28370708-28370727 None:intergenic 30.0%
TCTCGTATAAGACCAAAAAA+CGG + chr1_2:28370709-28370728 Msa0065710:CDS 30.0%
AACAGAAAAGAAACACTAAC+TGG - chr1_2:28371123-28371142 None:intergenic 30.0%
! AAATTAGATTACAGCATCGA+GGG - chr1_2:28371190-28371209 None:intergenic 30.0%
AAAATTAGATTACAGCATCG+AGG - chr1_2:28371191-28371210 None:intergenic 30.0%
ATTAAGACAAACACAAAAGG+TGG - chr1_2:28371289-28371308 None:intergenic 30.0%
TTGTCTGTGTGAATCTAAAT+AGG + chr1_2:28371317-28371336 Msa0065710:intron 30.0%
TTAATGTGGAAAATATGCGA+GGG + chr1_2:28371449-28371468 Msa0065710:intron 30.0%
TCTTATGACTATTATGGTTG+TGG + chr1_2:28371548-28371567 Msa0065710:intron 30.0%
GAAAACAGTAAACATGATGA+TGG + chr1_2:28371725-28371744 Msa0065710:intron 30.0%
!! AGTTCTAAGTTAAGTAGAGA+TGG + chr1_2:28371772-28371791 Msa0065710:intron 30.0%
! TTGTTTTCAGTCATGTCTTA+TGG - chr1_2:28372032-28372051 None:intergenic 30.0%
ATGACTGAAAACAATGATAG+AGG + chr1_2:28372038-28372057 Msa0065710:intron 30.0%
TGGAGCAAAATTATTGTGAA+TGG + chr1_2:28372507-28372526 Msa0065710:intron 30.0%
! AACAATTTTGCTTCCTTAAC+TGG + chr1_2:28372598-28372617 Msa0065710:CDS 30.0%
GAATAAAAACTAGTACTAGG+AGG - chr1_2:28372631-28372650 None:intergenic 30.0%
GTGGAATAAAAACTAGTACT+AGG - chr1_2:28372634-28372653 None:intergenic 30.0%
GATAATACACATCATGTTAG+CGG + chr1_2:28372782-28372801 Msa0065710:intron 30.0%
GTTTATCATCAAAAGCTTCT+TGG + chr1_2:28372835-28372854 Msa0065710:intron 30.0%
TATGGTCGAAAACAAGTAAA+AGG - chr1_2:28372871-28372890 None:intergenic 30.0%
TTGCAGTTGTATTACATCAT+CGG + chr1_2:28372895-28372914 Msa0065710:intron 30.0%
AAATCGGAACATACTATCAT+AGG + chr1_2:28373005-28373024 Msa0065710:intron 30.0%
AATCGGAACATACTATCATA+GGG + chr1_2:28373006-28373025 Msa0065710:intron 30.0%
TTACGGAAAGATGATCATAA+AGG + chr1_2:28373275-28373294 Msa0065710:CDS 30.0%
GTATGTCTTCAAAAAATCCG+TGG + chr1_2:28368340-28368359 Msa0065710:CDS 35.0%
!! TCTTGATAGTGAACACTTCA+AGG - chr1_2:28368375-28368394 None:intergenic 35.0%
! TGTATTACTACCCTTTTGCT+GGG + chr1_2:28368402-28368421 Msa0065710:CDS 35.0%
CATCTTCTATGATGCCAAAT+TGG + chr1_2:28368534-28368553 Msa0065710:CDS 35.0%
GAAAAAGATTGAGTGTAAGG+TGG + chr1_2:28368562-28368581 Msa0065710:CDS 35.0%
ATCAGATCACAATGAGTAAG+AGG - chr1_2:28368630-28368649 None:intergenic 35.0%
CATTTATGGTTCGATTGAGT+CGG + chr1_2:28368672-28368691 Msa0065710:intron 35.0%
AAGAAATTTGATAGGGTTGG+AGG - chr1_2:28368714-28368733 None:intergenic 35.0%
CCGGACAAAGAAACTTAAAT+AGG - chr1_2:28368931-28368950 None:intergenic 35.0%
ATGAATGCAAGACAAACAAC+TGG + chr1_2:28369080-28369099 Msa0065710:intron 35.0%
ATAGAACATGTCATGTCACT+GGG + chr1_2:28369108-28369127 Msa0065710:intron 35.0%
! TTTTGTATTCCTTGGTCAAG+TGG - chr1_2:28369212-28369231 None:intergenic 35.0%
AGATAGGTACAAGCTATTCT+TGG + chr1_2:28369236-28369255 Msa0065710:intron 35.0%
GATAGGTACAAGCTATTCTT+GGG + chr1_2:28369237-28369256 Msa0065710:intron 35.0%
TGCCTATATGTCTATGTTTC+CGG - chr1_2:28369281-28369300 None:intergenic 35.0%
GGTAGATACAAACTGTTCTT+TGG + chr1_2:28369417-28369436 Msa0065710:intron 35.0%
! ATGCTTTGTTATCGGTCAAA+CGG - chr1_2:28369514-28369533 None:intergenic 35.0%
TCAGCACAAAAAATACCTGA+AGG + chr1_2:28369607-28369626 Msa0065710:intron 35.0%
CAGCACAAAAAATACCTGAA+GGG + chr1_2:28369608-28369627 Msa0065710:intron 35.0%
CAGTATGTATATTTCCCTTC+AGG - chr1_2:28369625-28369644 None:intergenic 35.0%
GAAGGGAAATATACATACTG+TGG + chr1_2:28369625-28369644 Msa0065710:intron 35.0%
TCAGTGGATAGTTGAAATGA+TGG + chr1_2:28369709-28369728 Msa0065710:intron 35.0%
CAGTGGATAGTTGAAATGAT+GGG + chr1_2:28369710-28369729 Msa0065710:intron 35.0%
AGGGATAACGTAAAGTGAAA+AGG - chr1_2:28369826-28369845 None:intergenic 35.0%
TTCATGATGTTGTGAGTGTT+TGG - chr1_2:28370162-28370181 None:intergenic 35.0%
!! TCTGTTGGTGATAATGATCA+TGG - chr1_2:28370239-28370258 None:intergenic 35.0%
TATCATCTTCAAGAGTCTGT+TGG - chr1_2:28370254-28370273 None:intergenic 35.0%
GAAGATGATAAGAAAAACCC+AGG + chr1_2:28370264-28370283 Msa0065710:CDS 35.0%
AACTGTAGATTCTTGAACCT+GGG - chr1_2:28370284-28370303 None:intergenic 35.0%
TGTCACAAAACATTTACCTC+TGG + chr1_2:28370312-28370331 Msa0065710:CDS 35.0%
TTTACCTCTGGTAAATCACT+TGG + chr1_2:28370324-28370343 Msa0065710:CDS 35.0%
CATGATCATGCTGTGAATAA+CGG + chr1_2:28370411-28370430 Msa0065710:CDS 35.0%
CACAAGCATAATCATGATGA+TGG + chr1_2:28370486-28370505 Msa0065710:CDS 35.0%
CTTTGAATGGACATATGAGA+TGG + chr1_2:28370565-28370584 Msa0065710:CDS 35.0%
TATGAGATGGCATACTCAAA+AGG + chr1_2:28370578-28370597 Msa0065710:CDS 35.0%
ATGAGATGGCATACTCAAAA+GGG + chr1_2:28370579-28370598 Msa0065710:CDS 35.0%
TACTTTGACAAGTCAGTAGA+TGG - chr1_2:28370678-28370697 None:intergenic 35.0%
GTTATGAGGGATCAACTAAA+AGG + chr1_2:28370814-28370833 Msa0065710:CDS 35.0%
! GGATGATAATGAGAAGATGA+AGG + chr1_2:28370860-28370879 Msa0065710:CDS 35.0%
AATGAGAAGATGAAGGAACA+AGG + chr1_2:28370867-28370886 Msa0065710:CDS 35.0%
TTGCCACAACGAAAAAAACT+TGG + chr1_2:28370911-28370930 Msa0065710:CDS 35.0%
AGCGAAGATGAAACTGAATT+AGG + chr1_2:28371035-28371054 Msa0065710:CDS 35.0%
GCGAAGATGAAACTGAATTA+GGG + chr1_2:28371036-28371055 Msa0065710:CDS 35.0%
TCATCTTCGAAATCATCACT+TGG - chr1_2:28371098-28371117 None:intergenic 35.0%
ATGAGTTTACTGTCAAAGAG+TGG + chr1_2:28371425-28371444 Msa0065710:intron 35.0%
CTTAATGTGGAAAATATGCG+AGG + chr1_2:28371448-28371467 Msa0065710:intron 35.0%
!! CAGTAAACATGATGATGGAA+AGG + chr1_2:28371730-28371749 Msa0065710:intron 35.0%
ACCTAGATTACTTGGACTAT+TGG + chr1_2:28372095-28372114 Msa0065710:intron 35.0%
ACCAATAGTCCAAGTAATCT+AGG - chr1_2:28372099-28372118 None:intergenic 35.0%
GAATCAGATACGAAAAATGC+AGG - chr1_2:28372162-28372181 None:intergenic 35.0%
! CATTTGAGATCTCACATTGT+TGG + chr1_2:28372296-28372315 Msa0065710:intron 35.0%
!!! GCTTGTGTCACTTTTTACTA+TGG + chr1_2:28372410-28372429 Msa0065710:intron 35.0%
!! ACTTAAGAAGTCACTGACTT+TGG + chr1_2:28372487-28372506 Msa0065710:intron 35.0%
TGTATTACATCATCGGATAC+TGG + chr1_2:28372902-28372921 Msa0065710:CDS 35.0%
TGCACATATGGAAAGTTACA+GGG + chr1_2:28373032-28373051 Msa0065710:intron 35.0%
AAGAATTGTGTTATATGCCC+AGG + chr1_2:28373063-28373082 Msa0065710:intron 35.0%
AGAATTGTGTTATATGCCCA+GGG + chr1_2:28373064-28373083 Msa0065710:intron 35.0%
! CAGTTATCTAGACTAGTTAG+CGG - chr1_2:28373102-28373121 None:intergenic 35.0%
!! AACTGGTTGATGAAAGAAGA+AGG + chr1_2:28373117-28373136 Msa0065710:CDS 35.0%
GGAAAGATGATCATAAAGGA+AGG + chr1_2:28373279-28373298 Msa0065710:CDS 35.0%
AAGATGATCATAAAGGAAGG+AGG + chr1_2:28373282-28373301 Msa0065710:CDS 35.0%
AGATGATCATAAAGGAAGGA+GGG + chr1_2:28373283-28373302 Msa0065710:CDS 35.0%
!!! TCCACTTTTGAAGTTGATGA+AGG + chr1_2:28373311-28373330 Msa0065710:CDS 35.0%
TCCTTCATCAACTTCAAAAG+TGG - chr1_2:28373315-28373334 None:intergenic 35.0%
!! TTGAAGTTGATGAAGGAAGA+AGG + chr1_2:28373318-28373337 Msa0065710:CDS 35.0%
!! TGAAGTTGATGAAGGAAGAA+GGG + chr1_2:28373319-28373338 Msa0065710:CDS 35.0%
! AGTATAATGGCAGAGTTGAT+GGG - chr1_2:28373393-28373412 None:intergenic 35.0%
GCACAGGATAGTAACAATCT+GGG - chr1_2:28368220-28368239 None:intergenic 40.0%
!! TAGAGAGTGTGATTTGGTGT+TGG - chr1_2:28368269-28368288 None:intergenic 40.0%
! GTGAGATAGAGAGTGTGATT+TGG - chr1_2:28368275-28368294 None:intergenic 40.0%
! TTGATGACCAAATTGAGCTC+AGG + chr1_2:28368300-28368319 Msa0065710:CDS 40.0%
CTTCAAAAAATCCGTGGAGA+TGG + chr1_2:28368346-28368365 Msa0065710:CDS 40.0%
! GTGTATTACTACCCTTTTGC+TGG + chr1_2:28368401-28368420 Msa0065710:CDS 40.0%
TCTTAAACCTCCCAGCAAAA+GGG - chr1_2:28368415-28368434 None:intergenic 40.0%
CACTGAGGATGAGAATAAGT+TGG + chr1_2:28368439-28368458 Msa0065710:CDS 40.0%
AAGTTGGAGCTAGATTGCAA+TGG + chr1_2:28368455-28368474 Msa0065710:CDS 40.0%
CTATGATGCCAAATTGGTCA+TGG + chr1_2:28368540-28368559 Msa0065710:CDS 40.0%
AGGATACACAAGATCTAACC+TGG - chr1_2:28368610-28368629 None:intergenic 40.0%
ATTTGATAGGGTTGGAGGTA+GGG - chr1_2:28368709-28368728 None:intergenic 40.0%
AATTTGATAGGGTTGGAGGT+AGG - chr1_2:28368710-28368729 None:intergenic 40.0%
!! AGACGAAGTCTTTGAGTTGA+CGG + chr1_2:28368960-28368979 Msa0065710:intron 40.0%
CAGTGACATGACATGTTCTA+TGG - chr1_2:28369109-28369128 None:intergenic 40.0%
CATAGAACATGTCATGTCAC+TGG + chr1_2:28369107-28369126 Msa0065710:intron 40.0%
TAGAACATGTCATGTCACTG+GGG + chr1_2:28369109-28369128 Msa0065710:intron 40.0%
ACGAGGTACAAGTTGTTCTT+TGG + chr1_2:28369176-28369195 Msa0065710:intron 40.0%
CGAGGTACAAGTTGTTCTTT+GGG + chr1_2:28369177-28369196 Msa0065710:intron 40.0%
GACCGGAAACATAGACATAT+AGG + chr1_2:28369276-28369295 Msa0065710:intron 40.0%
AACTGTTCTTGGGATTGAAC+TGG + chr1_2:28369367-28369386 Msa0065710:intron 40.0%
TGTCTATATCTCCAGCCAAA+CGG - chr1_2:28369393-28369412 None:intergenic 40.0%
TGGCTGGAGATATAGACAAA+AGG + chr1_2:28369395-28369414 Msa0065710:intron 40.0%
GGCTGGAGATATAGACAAAA+GGG + chr1_2:28369396-28369415 Msa0065710:intron 40.0%
! TTTGGATCGAACTTGCTTGT+TGG + chr1_2:28369435-28369454 Msa0065710:intron 40.0%
TGGATTATCACCACATCATG+TGG + chr1_2:28369455-28369474 Msa0065710:intron 40.0%
GGATTATCACCACATCATGT+GGG + chr1_2:28369456-28369475 Msa0065710:intron 40.0%
ACCGATAACAAAGCATAAGC+TGG + chr1_2:28369518-28369537 Msa0065710:intron 40.0%
! CCCAGCTTATGCTTTGTTAT+CGG - chr1_2:28369522-28369541 None:intergenic 40.0%
CCGATAACAAAGCATAAGCT+GGG + chr1_2:28369519-28369538 Msa0065710:intron 40.0%
GCAGATAGCATTTACATCAG+TGG + chr1_2:28369693-28369712 Msa0065710:intron 40.0%
! GAAATGATGGGAGAAAAACG+CGG + chr1_2:28369722-28369741 Msa0065710:intron 40.0%
!!! TGAAAAGGTGTTTTTGCCTC+AGG - chr1_2:28369811-28369830 None:intergenic 40.0%
TCAAACGAATGGTGAGAAGA+AGG - chr1_2:28370201-28370220 None:intergenic 40.0%
CAACTGTAGATTCTTGAACC+TGG - chr1_2:28370285-28370304 None:intergenic 40.0%
!! AGGTTGAAGAAGAGTGTTAG+AGG - chr1_2:28370373-28370392 None:intergenic 40.0%
CGTTATTCACAGCATGATCA+TGG - chr1_2:28370413-28370432 None:intergenic 40.0%
! TCATCCAACAGTGCTTTGAA+TGG + chr1_2:28370552-28370571 Msa0065710:CDS 40.0%
!! ATGTCCATTCAAAGCACTGT+TGG - chr1_2:28370559-28370578 None:intergenic 40.0%
TACTCAAAAGGGTTCGAAGA+AGG + chr1_2:28370590-28370609 Msa0065710:CDS 40.0%
ACTCAAAAGGGTTCGAAGAA+GGG + chr1_2:28370591-28370610 Msa0065710:CDS 40.0%
!! TTGGTCTTATACGAGATTGG+CGG - chr1_2:28370705-28370724 None:intergenic 40.0%
! GCGTATTGCTGATAATGATG+AGG + chr1_2:28370746-28370765 Msa0065710:CDS 40.0%
TATGTCTTATGGGGGTTATG+AGG + chr1_2:28370800-28370819 Msa0065710:CDS 40.0%
ATGTCTTATGGGGGTTATGA+GGG + chr1_2:28370801-28370820 Msa0065710:CDS 40.0%
GCAGAAGATTTCCAGCAATA+CGG + chr1_2:28370836-28370855 Msa0065710:CDS 40.0%
ATTATCATCCACCGTATTGC+TGG - chr1_2:28370850-28370869 None:intergenic 40.0%
!!! GCACCAAGTTTTTTTCGTTG+TGG - chr1_2:28370917-28370936 None:intergenic 40.0%
!! ACGAAAAAAACTTGGTGCTG+AGG + chr1_2:28370919-28370938 Msa0065710:CDS 40.0%
TCAAACATCGCAAGATTGCA+AGG + chr1_2:28370968-28370987 Msa0065710:CDS 40.0%
GGATCTAGCTGTGATATTGA+AGG + chr1_2:28370999-28371018 Msa0065710:CDS 40.0%
AATTAGGGTCAAGAGTTGTC+AGG + chr1_2:28371051-28371070 Msa0065710:CDS 40.0%
TGTCAAAGAGTGGCTTAATG+TGG + chr1_2:28371435-28371454 Msa0065710:intron 40.0%
TGGAAAATATGCGAGGGTTA+AGG + chr1_2:28371455-28371474 Msa0065710:intron 40.0%
AAACAATGATAGAGGAACCG+AGG + chr1_2:28372046-28372065 Msa0065710:intron 40.0%
CCAAGTAATCTAGGTGACTT+TGG - chr1_2:28372090-28372109 None:intergenic 40.0%
CCAAAGTCACCTAGATTACT+TGG + chr1_2:28372087-28372106 Msa0065710:intron 40.0%
! GAAAAATGCAGGCAGCTTTT+AGG - chr1_2:28372151-28372170 None:intergenic 40.0%
GTGATAACAATGCCAAAGAC+AGG + chr1_2:28372343-28372362 Msa0065710:CDS 40.0%
TAACAATGCCAAAGACAGGT+TGG + chr1_2:28372347-28372366 Msa0065710:intron 40.0%
TAACCATACCAACCTGTCTT+TGG - chr1_2:28372358-28372377 None:intergenic 40.0%
!! CTAGCTAGTTTCTGGCAAAA+AGG - chr1_2:28372388-28372407 None:intergenic 40.0%
! CTTTTTGCCAGAAACTAGCT+AGG + chr1_2:28372386-28372405 Msa0065710:intron 40.0%
!!! GTGTCACTTTTTACTATGGC+TGG + chr1_2:28372414-28372433 Msa0065710:intron 40.0%
!! CACTTTTTACTATGGCTGGA+AGG + chr1_2:28372418-28372437 Msa0065710:intron 40.0%
GTATCAATGTCATGTATGCC+TGG - chr1_2:28372455-28372474 None:intergenic 40.0%
TTTGCTTCCTTAACTGGATC+TGG + chr1_2:28372604-28372623 Msa0065710:CDS 40.0%
! AACGATGTGTTTAGGATCTG+TGG - chr1_2:28372656-28372675 None:intergenic 40.0%
TCCTCCATATAATTCCAGAC+AGG + chr1_2:28372731-28372750 Msa0065710:intron 40.0%
! TCCTGTCTGGAATTATATGG+AGG - chr1_2:28372735-28372754 None:intergenic 40.0%
! GGTTCCTGTCTGGAATTATA+TGG - chr1_2:28372738-28372757 None:intergenic 40.0%
! ATAGCTAATTGGTTCCTGTC+TGG - chr1_2:28372748-28372767 None:intergenic 40.0%
GGTCGAAAACAAGTAAAAGG+AGG - chr1_2:28372868-28372887 None:intergenic 40.0%
GGAACGAAACAATTGTGCAT+TGG + chr1_2:28372923-28372942 Msa0065710:CDS 40.0%
GTGCACATATGGAAAGTTAC+AGG + chr1_2:28373031-28373050 Msa0065710:intron 40.0%
! CGCTAACTAGTCTAGATAAC+TGG + chr1_2:28373100-28373119 Msa0065710:CDS 40.0%
GTTGGAGTTGAAGAGAGAAA+TGG - chr1_2:28373176-28373195 None:intergenic 40.0%
GCACATGAAAGCAACTGTTA+CGG + chr1_2:28373258-28373277 Msa0065710:CDS 40.0%
GATGATCATAAAGGAAGGAG+GGG + chr1_2:28373284-28373303 Msa0065710:CDS 40.0%
! GATGGGTTTGAGTATACGAA+TGG - chr1_2:28373376-28373395 None:intergenic 40.0%
GAGTATAATGGCAGAGTTGA+TGG - chr1_2:28373394-28373413 None:intergenic 40.0%
GGCGTTTGTGATGAGTATAA+TGG - chr1_2:28373406-28373425 None:intergenic 40.0%
GTAACAATCTGGGAGTTCCA+CGG - chr1_2:28368210-28368229 None:intergenic 45.0%
GGCACAGGATAGTAACAATC+TGG - chr1_2:28368221-28368240 None:intergenic 45.0%
!! ATTTGGTGTTGGTGCACATG+GGG - chr1_2:28368258-28368277 None:intergenic 45.0%
!! GATTTGGTGTTGGTGCACAT+GGG - chr1_2:28368259-28368278 None:intergenic 45.0%
!! TGATTTGGTGTTGGTGCACA+TGG - chr1_2:28368260-28368279 None:intergenic 45.0%
CAGGAAACCTGAGCTCAATT+TGG - chr1_2:28368310-28368329 None:intergenic 45.0%
! ATTACTACCCTTTTGCTGGG+AGG + chr1_2:28368405-28368424 Msa0065710:CDS 45.0%
GTCTTAAACCTCCCAGCAAA+AGG - chr1_2:28368416-28368435 None:intergenic 45.0%
! GAGGTTTAAGACTAGCACTG+AGG + chr1_2:28368424-28368443 Msa0065710:CDS 45.0%
GAGCTAGATTGCAATGGAGA+AGG + chr1_2:28368461-28368480 Msa0065710:CDS 45.0%
! AGAAGGTGTAGTGTTTGCTG+AGG + chr1_2:28368478-28368497 Msa0065710:CDS 45.0%
! TGTAGTGTTTGCTGAGGCTT+CGG + chr1_2:28368484-28368503 Msa0065710:CDS 45.0%
ACATCTTCCACTTGCAATCC+AGG + chr1_2:28368589-28368608 Msa0065710:CDS 45.0%
GATCTAACCTGGATTGCAAG+TGG - chr1_2:28368599-28368618 None:intergenic 45.0%
TGGTTCGATTGAGTCGGATT+TGG + chr1_2:28368678-28368697 Msa0065710:intron 45.0%
!! GACGAAGTCTTTGAGTTGAC+GGG + chr1_2:28368961-28368980 Msa0065710:intron 45.0%
GATTCAGGTGGACATTGACA+GGG + chr1_2:28369131-28369150 Msa0065710:intron 45.0%
GCTATTCTTGGGATCGAACT+TGG + chr1_2:28369248-28369267 Msa0065710:intron 45.0%
AGGCAGACACAAACTGTTCT+TGG + chr1_2:28369356-28369375 Msa0065710:intron 45.0%
GGCAGACACAAACTGTTCTT+GGG + chr1_2:28369357-28369376 Msa0065710:intron 45.0%
TTGCACTTACCCACATGATG+TGG - chr1_2:28369468-28369487 None:intergenic 45.0%
TGTTGTGATCGATGTAGCAG+TGG - chr1_2:28369975-28369994 None:intergenic 45.0%
! ATGTTGTGAGTGTTTGGCTC+AGG - chr1_2:28370156-28370175 None:intergenic 45.0%
ACCTCTGGTAAATCACTTGG+TGG + chr1_2:28370327-28370346 Msa0065710:CDS 45.0%
ACCACCAAGTGATTTACCAG+AGG - chr1_2:28370331-28370350 None:intergenic 45.0%
!! GAAGAAGAGTGTTAGAGGAG+CGG - chr1_2:28370368-28370387 None:intergenic 45.0%
GATCATGCTGTGAATAACGG+CGG + chr1_2:28370414-28370433 Msa0065710:CDS 45.0%
ACTTTGTTCCGAGGAAGATG+GGG - chr1_2:28370640-28370659 None:intergenic 45.0%
GACTTTGTTCCGAGGAAGAT+GGG - chr1_2:28370641-28370660 None:intergenic 45.0%
TGACTTTGTTCCGAGGAAGA+TGG - chr1_2:28370642-28370661 None:intergenic 45.0%
!! CTCAAGTTGACTTTGTTCCG+AGG - chr1_2:28370649-28370668 None:intergenic 45.0%
GAAGATTTCCAGCAATACGG+TGG + chr1_2:28370839-28370858 Msa0065710:CDS 45.0%
! AACAAGGTGTGCTGCTAACA+AGG + chr1_2:28370883-28370902 Msa0065710:CDS 45.0%
ATATCACAGCTAGATCCTGC+AGG - chr1_2:28370996-28371015 None:intergenic 45.0%
! TCTTCAGAAGTGTGTCCAAC+TGG - chr1_2:28371942-28371961 None:intergenic 45.0%
!! ATGCCAAAGACAGGTTGGTA+TGG + chr1_2:28372352-28372371 Msa0065710:intron 45.0%
! ACAAGCTCCTAGCTAGTTTC+TGG - chr1_2:28372396-28372415 None:intergenic 45.0%
GTCATGTATGCCTGGTGAAA+CGG - chr1_2:28372447-28372466 None:intergenic 45.0%
! GATGTGTTTAGGATCTGTGG+TGG - chr1_2:28372653-28372672 None:intergenic 45.0%
TGGAACAAAGCAAACACACG+TGG + chr1_2:28372943-28372962 Msa0065710:CDS 45.0%
GCAAACACACGTGGAACTAA+AGG + chr1_2:28372952-28372971 Msa0065710:CDS 45.0%
ATGACAGGGAACTGGGAAAT+CGG + chr1_2:28372989-28373008 Msa0065710:intron 45.0%
ATCATAGGGTCGTGCACATA+TGG + chr1_2:28373020-28373039 Msa0065710:intron 45.0%
TTCAACTCCAACATAAGCCG+CGG + chr1_2:28373184-28373203 Msa0065710:CDS 45.0%
CGGCAAATGAAGGAGACAAT+GGG - chr1_2:28373215-28373234 None:intergenic 45.0%
TTTCATGTGCCAGTAACACG+GGG - chr1_2:28373248-28373267 None:intergenic 45.0%
CTTTCATGTGCCAGTAACAC+GGG - chr1_2:28373249-28373268 None:intergenic 45.0%
GCTTTCATGTGCCAGTAACA+CGG - chr1_2:28373250-28373269 None:intergenic 45.0%
TTCTTCTGTGCGCATAGTTG+CGG - chr1_2:28373427-28373446 None:intergenic 45.0%
! CTTCAAGGCATCCATCTCCA+CGG - chr1_2:28368360-28368379 None:intergenic 50.0%
ATAGGGTTGGAGGTAGGGTT+TGG - chr1_2:28368704-28368723 None:intergenic 50.0%
GACTTCGTCTCTTGACTCTC+CGG - chr1_2:28368950-28368969 None:intergenic 50.0%
TGTCATGTCACTGGGGATTC+AGG + chr1_2:28369116-28369135 Msa0065710:intron 50.0%
GGATTCAGGTGGACATTGAC+AGG + chr1_2:28369130-28369149 Msa0065710:intron 50.0%
AGACCAGGGAGTAGAAAACG+AGG + chr1_2:28369159-28369178 Msa0065710:intron 50.0%
! GTACCTCGTTTTCTACTCCC+TGG - chr1_2:28369165-28369184 None:intergenic 50.0%
TCGAACTAGCCACTTGACCA+AGG + chr1_2:28369200-28369219 Msa0065710:intron 50.0%
GATCGAACTTGGCAGTTGAC+CGG + chr1_2:28369259-28369278 Msa0065710:intron 50.0%
GGCAGATACAAGCTGCTCTT+TGG + chr1_2:28369297-28369316 Msa0065710:intron 50.0%
TTGGGATTGAACTGGCCGTT+TGG + chr1_2:28369375-28369394 Msa0065710:intron 50.0%
! ATGATGGGAGAAAAACGCGG+TGG + chr1_2:28369725-28369744 Msa0065710:intron 50.0%
TCAGTGGTGAAAACTGCCTG+AGG + chr1_2:28369792-28369811 Msa0065710:intron 50.0%
AGACCAAAAAACGGAGTCCC+AGG + chr1_2:28370718-28370737 Msa0065710:CDS 50.0%
!!! TCTCCTGGGACTCCGTTTTT+TGG - chr1_2:28370724-28370743 None:intergenic 50.0%
AAAAACGGAGTCCCAGGAGA+AGG + chr1_2:28370724-28370743 Msa0065710:CDS 50.0%
TCAGCAATACGCCTTCTCCT+GGG - chr1_2:28370738-28370757 None:intergenic 50.0%
ATCAGCAATACGCCTTCTCC+TGG - chr1_2:28370739-28370758 None:intergenic 50.0%
CAAGATTGCAAGGAACCTGC+AGG + chr1_2:28370978-28370997 Msa0065710:CDS 50.0%
AGGAGGTCCAGATCCAGTTA+AGG - chr1_2:28372614-28372633 None:intergenic 50.0%
TTACAGCGTCCTGCATGACA+GGG + chr1_2:28372975-28372994 Msa0065710:intron 50.0%
GCGGCAATGTAACATTCCCT+GGG - chr1_2:28373083-28373102 None:intergenic 50.0%
AGCGGCAATGTAACATTCCC+TGG - chr1_2:28373084-28373103 None:intergenic 50.0%
GCGGCAAATGAAGGAGACAA+TGG - chr1_2:28373216-28373235 None:intergenic 50.0%
TTCATGTGCCAGTAACACGG+GGG - chr1_2:28373247-28373266 None:intergenic 50.0%
GATCATAAAGGAAGGAGGGG+CGG + chr1_2:28373287-28373306 Msa0065710:CDS 50.0%
ATCATAAAGGAAGGAGGGGC+GGG + chr1_2:28373288-28373307 Msa0065710:CDS 50.0%
TAGACCGAGACAATGCTGCA+AGG + chr1_2:28373349-28373368 Msa0065710:CDS 50.0%
AGACCGAGACAATGCTGCAA+GGG + chr1_2:28373350-28373369 Msa0065710:CDS 50.0%
! GTGATGGTCATTGGTGGCAC+AGG - chr1_2:28368236-28368255 None:intergenic 55.0%
! CATGGGGTGATGGTCATTGG+TGG - chr1_2:28368242-28368261 None:intergenic 55.0%
! GCACATGGGGTGATGGTCAT+TGG - chr1_2:28368245-28368264 None:intergenic 55.0%
TGTTGGTGCACATGGGGTGA+TGG - chr1_2:28368252-28368271 None:intergenic 55.0%
! AGTGTTTGCTGAGGCTTCGG+TGG + chr1_2:28368487-28368506 Msa0065710:CDS 55.0%
CATGTCACTGGGGATTCAGG+TGG + chr1_2:28369119-28369138 Msa0065710:intron 55.0%
TCAGGTGGACATTGACAGGG+TGG + chr1_2:28369134-28369153 Msa0065710:intron 55.0%
ATTGACAGGGTGGACAGACC+AGG + chr1_2:28369144-28369163 Msa0065710:intron 55.0%
TTGACAGGGTGGACAGACCA+GGG + chr1_2:28369145-28369164 Msa0065710:intron 55.0%
GATTGAACTGGCCGTTTGGC+TGG + chr1_2:28369379-28369398 Msa0065710:intron 55.0%
TGGAAGGCTTCCGTTTCACC+AGG + chr1_2:28372434-28372453 Msa0065710:intron 55.0%
GTTACAGCGTCCTGCATGAC+AGG + chr1_2:28372974-28372993 Msa0065710:intron 55.0%
GTCCTGCATGACAGGGAACT+GGG + chr1_2:28372982-28373001 Msa0065710:intron 55.0%
TTCCCAGTTCCCTGTCATGC+AGG - chr1_2:28372987-28373006 None:intergenic 55.0%
ACTCCAACATAAGCCGCGGA+CGG + chr1_2:28373188-28373207 Msa0065710:CDS 55.0%
GATGTGGCAGCGGCAAATGA+AGG - chr1_2:28373225-28373244 None:intergenic 55.0%
TGGCCCTTGCAGCATTGTCT+CGG - chr1_2:28373356-28373375 None:intergenic 55.0%
AAGATGGGGCAGTCGGTGAG+TGG - chr1_2:28370626-28370645 None:intergenic 60.0%
ACCGACTGCCCCATCTTCCT+CGG + chr1_2:28370629-28370648 Msa0065710:CDS 60.0%
TCCGAGGAAGATGGGGCAGT+CGG - chr1_2:28370633-28370652 None:intergenic 60.0%
CGTCCTGCATGACAGGGAAC+TGG + chr1_2:28372981-28373000 Msa0065710:intron 60.0%
CTCCAACATAAGCCGCGGAC+GGG + chr1_2:28373189-28373208 Msa0065710:CDS 60.0%
TAACACGGGGGATGTGGCAG+CGG - chr1_2:28373235-28373254 None:intergenic 60.0%
TGCCACATCCCCCGTGTTAC+TGG + chr1_2:28373236-28373255 Msa0065710:CDS 60.0%
TGCCAGTAACACGGGGGATG+TGG - chr1_2:28373241-28373260 None:intergenic 60.0%
GGCCCGTCCGCGGCTTATGT+TGG - chr1_2:28373194-28373213 None:intergenic 70.0%
GGAGACAATGGGCCCGTCCG+CGG - chr1_2:28373204-28373223 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 28368197 28373476 28368197 ID=Msa0065710;Name=Msa0065710
chr1_2 mRNA 28368197 28373476 28368197 ID=Msa0065710-mRNA-1;Parent=Msa0065710;Name=Msa0065710-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0|0|0|0.33|1|1|6|0|684
chr1_2 exon 28368197 28368610 28368197 ID=Msa0065710-mRNA-1:exon:9729;Parent=Msa0065710-mRNA-1
chr1_2 exon 28370099 28371122 28370099 ID=Msa0065710-mRNA-1:exon:9730;Parent=Msa0065710-mRNA-1
chr1_2 exon 28372343 28372364 28372343 ID=Msa0065710-mRNA-1:exon:9731;Parent=Msa0065710-mRNA-1
chr1_2 exon 28372582 28372711 28372582 ID=Msa0065710-mRNA-1:exon:9732;Parent=Msa0065710-mRNA-1
chr1_2 exon 28372901 28372973 28372901 ID=Msa0065710-mRNA-1:exon:9733;Parent=Msa0065710-mRNA-1
chr1_2 exon 28373085 28373476 28373085 ID=Msa0065710-mRNA-1:exon:9734;Parent=Msa0065710-mRNA-1
chr1_2 CDS 28368197 28368610 28368197 ID=Msa0065710-mRNA-1:cds;Parent=Msa0065710-mRNA-1
chr1_2 CDS 28370099 28371122 28370099 ID=Msa0065710-mRNA-1:cds;Parent=Msa0065710-mRNA-1
chr1_2 CDS 28372343 28372364 28372343 ID=Msa0065710-mRNA-1:cds;Parent=Msa0065710-mRNA-1
chr1_2 CDS 28372582 28372711 28372582 ID=Msa0065710-mRNA-1:cds;Parent=Msa0065710-mRNA-1
chr1_2 CDS 28372901 28372973 28372901 ID=Msa0065710-mRNA-1:cds;Parent=Msa0065710-mRNA-1
chr1_2 CDS 28373085 28373476 28373085 ID=Msa0065710-mRNA-1:cds;Parent=Msa0065710-mRNA-1
Gene Sequence

>Msa0065710

ATGTCAAGATCCGTGGAACTCCCAGATTGTTACTATCCTGTGCCACCAATGACCATCACCCCATGTGCACCAACACCAAATCACACTCTCTATCTCACTAATCTTGATGACCAAATTGAGCTCAGGTTTCCTGTCAATTATGTGTATGTCTTCAAAAAATCCGTGGAGATGGATGCCTTGAAGTGTTCACTATCAAGAGTTATAGTGTATTACTACCCTTTTGCTGGGAGGTTTAAGACTAGCACTGAGGATGAGAATAAGTTGGAGCTAGATTGCAATGGAGAAGGTGTAGTGTTTGCTGAGGCTTCGGTGGATATCACTGCTAAAGAATTATTCACATCTTCTATGATGCCAAATTGGTCATGGAAAAAGATTGAGTGTAAGGTGGAATCACATCTTCCACTTGCAATCCAGAAACAACAAGGTTCAAACCCTAAGTTCAAACCCTATAGTTTTTTTGTACACTCACCTGAGCCAAACACTCACAACATCATGAACAAACACTATTCTTCACCTTCTTCTCACCATTCGTTTGATAAACCCAAAAACAGCCATGATCATTATCACCAACAGACTCTTGAAGATGATAAGAAAAACCCAGGTTCAAGAATCTACAGTTGTGAGTTCTGTCACAAAACATTTACCTCTGGTAAATCACTTGGTGGTCACAAAACTATTCACCGCTCCTCTAACACTCTTCTTCAACCTAAAACAAACAAACAGATCCATGATCATGCTGTGAATAACGGCGGCACCTTGAAGAAGACTACAAAAATTACTTGGGTTTTTTCTTCTTCTCTTCACAAGCATAATCATGATGATGGGAAACTGAAGAACCATACATGTGATGTTTGTAACAAGGTTTTTTCATCCAACAGTGCTTTGAATGGACATATGAGATGGCATACTCAAAAGGGTTCGAAGAAGGGTGTTATTATCCACTCACCGACTGCCCCATCTTCCTCGGAACAAAGTCAACTTGAGTTTCTACCATCTACTGACTTGTCAAAGTACTTGCCGCCAATCTCGTATAAGACCAAAAAACGGAGTCCCAGGAGAAGGCGTATTGCTGATAATGATGAGGAAATTACTATTGCTGCAAAAACATTGTTATATATGTCTTATGGGGGTTATGAGGGATCAACTAAAAGGCAGAAGATTTCCAGCAATACGGTGGATGATAATGAGAAGATGAAGGAACAAGGTGTGCTGCTAACAAGGTGTGTTTGCCACAACGAAAAAAACTTGGTGCTGAGGTTGAAGATTCCTAAAGACAAGATTTTTCAAACATCGCAAGATTGCAAGGAACCTGCAGGATCTAGCTGTGATATTGAAGGCAAGAAGAATATTAGCGAAGATGAAACTGAATTAGGGTCAAGAGTTGTCAGGAATTTTGATTTGAATGAGCTTCCAAGTGATGATTTCGAAGATGAAACCAGTGATAACAATGCCAAAGACAGGAAGAACTTACGAAATAACAATTTTGCTTCCTTAACTGGATCTGGACCTCCTAGTACTAGTTTTTATTCCACCACAGATCCTAAACACATCGTTGAAAATTTACATGTTAGGAATTATAAGAACTTGAATTTGTATTACATCATCGGATACTGGAACGAAACAATTGTGCATTGGAACAAAGCAAACACACGTGGAACTAAAGGGAATGTTACATTGCCGCTAACTAGTCTAGATAACTGGTTGATGAAAGAAGAAGGAAACACAATAACGCAAACAGAATGCTTCAAGCGCCATTTCTCTCTTCAACTCCAACATAAGCCGCGGACGGGCCCATTGTCTCCTTCATTTGCCGCTGCCACATCCCCCGTGTTACTGGCACATGAAAGCAACTGTTACGGAAAGATGATCATAAAGGAAGGAGGGGCGGGTCCACTTTTGAAGTTGATGAAGGAAGAAGGGAATACTCTAGACCGAGACAATGCTGCAAGGGCCATTCGTATACTCAAACCCATCAACTCTGCCATTATACTCATCACAAACGCCGCAACTATGCGCACAGAAGAAGAGTTAAGTATTGTCAAAACATTTTTTTGA
Protein sequence

>Msa0065710

MSRSVELPDCYYPVPPMTITPCAPTPNHTLYLTNLDDQIELRFPVNYVYVFKKSVEMDALKCSLSRVIVYYYPFAGRFKTSTEDENKLELDCNGEGVVFAEASVDITAKELFTSSMMPNWSWKKIECKVESHLPLAIQKQQGSNPKFKPYSFFVHSPEPNTHNIMNKHYSSPSSHHSFDKPKNSHDHYHQQTLEDDKKNPGSRIYSCEFCHKTFTSGKSLGGHKTIHRSSNTLLQPKTNKQIHDHAVNNGGTLKKTTKITWVFSSSLHKHNHDDGKLKNHTCDVCNKVFSSNSALNGHMRWHTQKGSKKGVIIHSPTAPSSSEQSQLEFLPSTDLSKYLPPISYKTKKRSPRRRRIADNDEEITIAAKTLLYMSYGGYEGSTKRQKISSNTVDDNEKMKEQGVLLTRCVCHNEKNLVLRLKIPKDKIFQTSQDCKEPAGSSCDIEGKKNISEDETELGSRVVRNFDLNELPSDDFEDETSDNNAKDRKNLRNNNFASLTGSGPPSTSFYSTTDPKHIVENLHVRNYKNLNLYYIIGYWNETIVHWNKANTRGTKGNVTLPLTSLDNWLMKEEGNTITQTECFKRHFSLQLQHKPRTGPLSPSFAAATSPVLLAHESNCYGKMIIKEGGAGPLLKLMKEEGNTLDRDNAARAIRILKPINSAIILITNAATMRTEEELSIVKTFF*