Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0066210 | XP_003627159.1 | 87.560 | 209 | 22 | 2 | 1 | 206 | 1 | 208 | 6.62e-125 | 371 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0066210 | sp|Q9CAI5|CKL2_ARATH | 80.861 | 209 | 36 | 2 | 1 | 206 | 1 | 208 | 4.06e-120 | 351 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0066210 | G7LI85 | 87.560 | 209 | 22 | 2 | 1 | 206 | 1 | 208 | 3.16e-125 | 371 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0066210 | MtrunA17_Chr8g0342821 | 87.560 | 209 | 22 | 2 | 1 | 206 | 1 | 208 | 6.09e-129 | 371 |
| Msa0066210 | MtrunA17_Chr2g0329981 | 82.857 | 210 | 31 | 3 | 1 | 206 | 1 | 209 | 3.07e-121 | 352 |
| Msa0066210 | MtrunA17_Chr4g0071031 | 81.905 | 210 | 33 | 3 | 1 | 206 | 1 | 209 | 3.31e-121 | 351 |
| Msa0066210 | MtrunA17_Chr2g0299661 | 76.077 | 209 | 47 | 2 | 1 | 206 | 1 | 209 | 8.43e-112 | 327 |
| Msa0066210 | MtrunA17_Chr1g0166821 | 72.683 | 205 | 53 | 2 | 5 | 206 | 6 | 210 | 1.86e-107 | 316 |
| Msa0066210 | MtrunA17_Chr1g0183631 | 70.813 | 209 | 58 | 2 | 1 | 206 | 1 | 209 | 2.18e-106 | 313 |
| Msa0066210 | MtrunA17_Chr7g0261501 | 69.378 | 209 | 61 | 2 | 1 | 206 | 1 | 209 | 2.79e-105 | 310 |
| Msa0066210 | MtrunA17_Chr1g0187571 | 70.335 | 209 | 59 | 2 | 1 | 206 | 2 | 210 | 6.86e-104 | 307 |
| Msa0066210 | MtrunA17_Chr6g0486611 | 69.048 | 210 | 60 | 3 | 1 | 206 | 1 | 209 | 7.74e-99 | 293 |
| Msa0066210 | MtrunA17_Chr8g0390211 | 66.190 | 210 | 66 | 3 | 1 | 206 | 1 | 209 | 1.58e-93 | 279 |
| Msa0066210 | MtrunA17_Chr1g0167261 | 62.559 | 211 | 72 | 3 | 1 | 206 | 2 | 210 | 5.41e-91 | 270 |
| Msa0066210 | MtrunA17_Chr3g0140071 | 61.137 | 211 | 75 | 3 | 1 | 206 | 1 | 209 | 1.84e-89 | 269 |
| Msa0066210 | MtrunA17_Chr1g0146151 | 61.429 | 210 | 76 | 3 | 1 | 206 | 1 | 209 | 6.11e-89 | 268 |
| Msa0066210 | MtrunA17_Chr7g0214531 | 36.111 | 216 | 121 | 5 | 9 | 207 | 37 | 252 | 5.47e-41 | 146 |
| Msa0066210 | MtrunA17_Chr1g0213321 | 36.967 | 211 | 121 | 5 | 9 | 207 | 119 | 329 | 7.17e-41 | 147 |
| Msa0066210 | MtrunA17_Chr7g0253211 | 37.387 | 222 | 121 | 6 | 4 | 207 | 317 | 538 | 8.74e-41 | 147 |
| Msa0066210 | MtrunA17_Chr3g0140431 | 37.143 | 210 | 121 | 5 | 9 | 207 | 38 | 247 | 2.77e-40 | 144 |
| Msa0066210 | MtrunA17_Chr1g0146301 | 36.190 | 210 | 123 | 5 | 9 | 207 | 124 | 333 | 2.33e-39 | 142 |
| Msa0066210 | MtrunA17_Chr8g0340491 | 35.023 | 217 | 123 | 6 | 9 | 207 | 128 | 344 | 2.63e-34 | 128 |
| Msa0066210 | MtrunA17_Chr3g0107011 | 28.704 | 216 | 134 | 9 | 1 | 206 | 5 | 210 | 1.47e-13 | 68.6 |
| Msa0066210 | MtrunA17_Chr8g0341101 | 27.488 | 211 | 135 | 7 | 5 | 207 | 615 | 815 | 1.16e-11 | 63.2 |
| Msa0066210 | MtrunA17_Chr4g0059951 | 30.625 | 160 | 102 | 3 | 4 | 155 | 68 | 226 | 1.20e-11 | 63.2 |
| Msa0066210 | MtrunA17_Chr7g0245031 | 35.644 | 101 | 55 | 2 | 107 | 207 | 252 | 342 | 1.42e-11 | 62.8 |
| Msa0066210 | MtrunA17_Chr5g0423891 | 29.353 | 201 | 127 | 7 | 15 | 207 | 169 | 362 | 1.96e-11 | 62.4 |
| Msa0066210 | MtrunA17_Chr4g0072831 | 31.788 | 151 | 85 | 5 | 1 | 151 | 2 | 134 | 2.10e-11 | 62.0 |
| Msa0066210 | MtrunA17_Chr3g0123141 | 27.885 | 208 | 128 | 10 | 11 | 207 | 610 | 806 | 3.63e-11 | 62.0 |
| Msa0066210 | MtrunA17_Chr5g0405421 | 25.116 | 215 | 144 | 6 | 2 | 207 | 92 | 298 | 4.95e-11 | 61.2 |
| Msa0066210 | MtrunA17_Chr5g0432471 | 27.273 | 209 | 133 | 8 | 7 | 206 | 10 | 208 | 6.44e-11 | 60.8 |
| Msa0066210 | MtrunA17_Chr1g0200601 | 28.481 | 158 | 102 | 3 | 3 | 151 | 24 | 179 | 7.36e-11 | 60.8 |
| Msa0066210 | MtrunA17_Chr7g0237401 | 29.907 | 214 | 131 | 8 | 5 | 207 | 89 | 294 | 9.85e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0066210 | AT1G72710.1 | 80.861 | 209 | 36 | 2 | 1 | 206 | 1 | 208 | 4.13e-121 | 351 |
| Msa0066210 | AT4G26100.1 | 79.524 | 210 | 38 | 3 | 1 | 206 | 1 | 209 | 3.47e-118 | 343 |
| Msa0066210 | AT5G57015.1 | 77.619 | 210 | 42 | 3 | 1 | 206 | 1 | 209 | 3.08e-116 | 338 |
| Msa0066210 | AT2G19470.1 | 74.163 | 209 | 51 | 2 | 1 | 206 | 1 | 209 | 1.26e-112 | 328 |
| Msa0066210 | AT1G03930.1 | 73.171 | 205 | 52 | 2 | 5 | 206 | 5 | 209 | 3.67e-108 | 318 |
| Msa0066210 | AT5G44100.1 | 71.707 | 205 | 55 | 2 | 5 | 206 | 5 | 209 | 2.45e-106 | 314 |
| Msa0066210 | AT5G44100.2 | 71.707 | 205 | 55 | 2 | 5 | 206 | 5 | 209 | 2.45e-106 | 314 |
| Msa0066210 | AT3G23340.1 | 67.943 | 209 | 64 | 2 | 1 | 206 | 1 | 209 | 4.28e-103 | 305 |
| Msa0066210 | AT5G43320.2 | 67.943 | 209 | 64 | 2 | 1 | 206 | 1 | 209 | 7.46e-103 | 301 |
| Msa0066210 | AT5G43320.3 | 67.943 | 209 | 64 | 2 | 1 | 206 | 1 | 209 | 7.46e-103 | 301 |
| Msa0066210 | AT5G43320.1 | 67.943 | 209 | 64 | 2 | 1 | 206 | 1 | 209 | 1.11e-102 | 305 |
| Msa0066210 | AT1G04440.1 | 67.943 | 209 | 64 | 2 | 1 | 206 | 1 | 209 | 7.05e-102 | 302 |
| Msa0066210 | AT4G14340.2 | 68.421 | 209 | 63 | 2 | 1 | 206 | 7 | 215 | 2.40e-101 | 297 |
| Msa0066210 | AT4G28540.1 | 67.943 | 209 | 64 | 2 | 1 | 206 | 5 | 213 | 4.34e-101 | 301 |
| Msa0066210 | AT4G14340.1 | 68.421 | 209 | 63 | 2 | 1 | 206 | 7 | 215 | 1.39e-100 | 299 |
| Msa0066210 | AT4G28880.3 | 66.667 | 210 | 65 | 3 | 1 | 206 | 1 | 209 | 4.94e-94 | 281 |
| Msa0066210 | AT4G28880.2 | 66.667 | 210 | 65 | 3 | 1 | 206 | 1 | 209 | 4.94e-94 | 281 |
| Msa0066210 | AT4G28880.1 | 66.667 | 210 | 65 | 3 | 1 | 206 | 1 | 209 | 4.94e-94 | 281 |
| Msa0066210 | AT4G28880.4 | 66.667 | 210 | 65 | 3 | 1 | 206 | 1 | 209 | 4.94e-94 | 281 |
| Msa0066210 | AT4G28860.2 | 64.593 | 209 | 71 | 2 | 1 | 206 | 1 | 209 | 1.64e-93 | 278 |
| Msa0066210 | AT4G28860.1 | 64.593 | 209 | 71 | 2 | 1 | 206 | 1 | 209 | 4.40e-93 | 278 |
| Msa0066210 | AT3G23340.2 | 66.667 | 189 | 60 | 2 | 21 | 206 | 7 | 195 | 2.09e-90 | 272 |
| Msa0066210 | AT4G08800.1 | 58.095 | 210 | 51 | 5 | 1 | 206 | 1 | 177 | 3.46e-75 | 228 |
| Msa0066210 | AT3G03940.1 | 38.288 | 222 | 119 | 6 | 4 | 207 | 133 | 354 | 7.62e-42 | 150 |
| Msa0066210 | AT5G18190.2 | 37.387 | 222 | 121 | 6 | 4 | 207 | 123 | 344 | 9.81e-41 | 147 |
| Msa0066210 | AT5G18190.1 | 37.387 | 222 | 121 | 6 | 4 | 207 | 123 | 344 | 9.81e-41 | 147 |
| Msa0066210 | AT2G25760.2 | 35.714 | 224 | 124 | 6 | 4 | 207 | 100 | 323 | 1.05e-40 | 146 |
| Msa0066210 | AT2G25760.1 | 35.714 | 224 | 124 | 6 | 4 | 207 | 100 | 323 | 1.18e-40 | 146 |
| Msa0066210 | AT3G13670.1 | 34.562 | 217 | 123 | 5 | 9 | 207 | 137 | 352 | 2.72e-38 | 140 |
| Msa0066210 | AT5G39440.1 | 27.670 | 206 | 129 | 8 | 9 | 206 | 19 | 212 | 1.89e-12 | 65.9 |
| Msa0066210 | AT5G58380.1 | 28.910 | 211 | 131 | 10 | 5 | 206 | 8 | 208 | 7.58e-12 | 63.9 |
| Msa0066210 | AT3G61960.2 | 26.540 | 211 | 139 | 6 | 4 | 207 | 5 | 206 | 3.22e-11 | 62.4 |
| Msa0066210 | AT1G07870.1 | 28.708 | 209 | 132 | 7 | 9 | 207 | 103 | 304 | 3.45e-11 | 62.0 |
| Msa0066210 | AT3G61960.1 | 26.540 | 211 | 139 | 6 | 4 | 207 | 5 | 206 | 3.82e-11 | 62.0 |
| Msa0066210 | AT1G07870.2 | 28.708 | 209 | 132 | 7 | 9 | 207 | 103 | 304 | 4.45e-11 | 62.0 |
| Msa0066210 | AT1G29230.1 | 27.962 | 211 | 127 | 11 | 8 | 206 | 73 | 270 | 9.64e-11 | 60.8 |
| Msa0066210 | AT3G29160.1 | 28.019 | 207 | 128 | 9 | 9 | 206 | 20 | 214 | 9.68e-11 | 60.8 |
| Msa0066210 | AT3G29160.2 | 28.019 | 207 | 128 | 9 | 9 | 206 | 20 | 214 | 9.68e-11 | 60.8 |
Find 77 sgRNAs with CRISPR-Local
Find 279 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTGAGATTGAAGGATATTT+AGG | 0.218210 | 1_2:+29350978 | None:intergenic |
| GACAATTTCCTCATGGGTTT+AGG | 0.228856 | 1_2:-29349865 | Msa0066210:CDS |
| ATTTATTCAATTTCTGTAAT+AGG | 0.238085 | 1_2:-29350068 | Msa0066210:CDS |
| TCTTTCGGAGAGATCTATTT+AGG | 0.249141 | 1_2:-29350760 | Msa0066210:intron |
| TTCCGTCTTGGGAGGAAAAT+TGG | 0.260322 | 1_2:-29350790 | Msa0066210:CDS |
| TTCTTCATTAGTTTGAATAT+TGG | 0.282133 | 1_2:+29350652 | None:intergenic |
| TTGAAATATTTATCCACGTT+TGG | 0.293405 | 1_2:+29346666 | None:intergenic |
| CGATATCAGTTATGTGCAAT+TGG | 0.311219 | 1_2:-29347074 | Msa0066210:three_prime_UTR |
| TGAAATATTTATCCACGTTT+GGG | 0.338383 | 1_2:+29346667 | None:intergenic |
| ACAATTTCCTCATGGGTTTA+GGG | 0.340991 | 1_2:-29349864 | Msa0066210:CDS |
| ATTAAACCCTAATTGAAAAT+CGG | 0.386169 | 1_2:+29350835 | None:intergenic |
| GGTTTAATGGAACCTCGAAT+TGG | 0.394217 | 1_2:-29350820 | Msa0066210:exon |
| AAAATTGGTAGCGGATCTTT+CGG | 0.404618 | 1_2:-29350775 | Msa0066210:CDS |
| CAAAATGCAGATGAATTTCA+CGG | 0.424897 | 1_2:-29347571 | Msa0066210:intron |
| AATATCCTTCAATCTCACTA+TGG | 0.430325 | 1_2:-29350974 | Msa0066210:five_prime_UTR |
| TTGGGAATAAGTTCCGTCTT+GGG | 0.445582 | 1_2:-29350801 | Msa0066210:CDS |
| GTTTAATGGAACCTCGAATT+GGG | 0.447782 | 1_2:-29350819 | Msa0066210:exon |
| GCCTCACTATATTTGCTTCG+AGG | 0.449249 | 1_2:-29346638 | Msa0066210:three_prime_UTR |
| GATATCAGTTATGTGCAATT+GGG | 0.457624 | 1_2:-29347073 | Msa0066210:three_prime_UTR |
| TCTTATGCTTGCTGATCAAA+TGG | 0.460267 | 1_2:-29350025 | Msa0066210:intron |
| ACAGAATGCTATGCTCTGTT+TGG | 0.461339 | 1_2:+29346347 | None:intergenic |
| GTCAGCCTTGCAAAGAATAT+CGG | 0.466990 | 1_2:-29346755 | Msa0066210:three_prime_UTR |
| ACACCGGACCATTTCACATT+CGG | 0.480710 | 1_2:+29350144 | None:intergenic |
| CTGGGATACCGAATGTGAAA+TGG | 0.480856 | 1_2:-29350152 | Msa0066210:CDS |
| AACGATTGAGAGTGAGATTG+AGG | 0.486175 | 1_2:+29350928 | None:intergenic |
| ATTGGGAATAAGTTCCGTCT+TGG | 0.488327 | 1_2:-29350802 | Msa0066210:CDS |
| TTATCCACGTTTGGGAAAAG+TGG | 0.492195 | 1_2:+29346675 | None:intergenic |
| AAACGTGGATAAATATTTCA+AGG | 0.494306 | 1_2:-29346664 | Msa0066210:three_prime_UTR |
| ATCCTAGTGATGGATTTACT+TGG | 0.499759 | 1_2:-29350105 | Msa0066210:CDS |
| TTACCTTGAGAAACTGAAGT+AGG | 0.501190 | 1_2:+29347008 | None:intergenic |
| TTTACTTGGCCCTAGTCTTG+AGG | 0.502228 | 1_2:-29350091 | Msa0066210:CDS |
| CGGAACTTATTCCCAATTCG+AGG | 0.514181 | 1_2:+29350808 | None:intergenic |
| AAGCCAGACAATTTCCTCAT+GGG | 0.517628 | 1_2:-29349871 | Msa0066210:CDS |
| CGTCATCGTAGAAGAAGAAA+GGG | 0.517781 | 1_2:+29350889 | None:intergenic |
| TAGGTGTACATCATTGACTT+TGG | 0.518918 | 1_2:-29349731 | Msa0066210:CDS |
| GCTAGTATGAATGCTCGTCT+TGG | 0.520316 | 1_2:-29347846 | Msa0066210:CDS |
| TTGAATAAATCCTCAAGACT+AGG | 0.522442 | 1_2:+29350081 | None:intergenic |
| GCGTCATCGTAGAAGAAGAA+AGG | 0.524746 | 1_2:+29350888 | None:intergenic |
| GTGAGCCATAGTGAGATTGA+AGG | 0.527676 | 1_2:+29350969 | None:intergenic |
| AAACCCATGAGGAAATTGTC+TGG | 0.531680 | 1_2:+29349868 | None:intergenic |
| ATTGAGAGTGAGATTGAGGA+TGG | 0.532979 | 1_2:+29350932 | None:intergenic |
| GTGAAATGGTCCGGTGTCGA+AGG | 0.536640 | 1_2:-29350138 | Msa0066210:CDS |
| CTTCGAGGCAGTCATGGAGA+AGG | 0.536882 | 1_2:-29346623 | Msa0066210:three_prime_UTR |
| TGAGGATGGATGTGAGATTG+AGG | 0.543014 | 1_2:+29350946 | None:intergenic |
| GGTTTCAATGTTAAATGCAA+AGG | 0.543722 | 1_2:-29347550 | Msa0066210:intron |
| CACATCAGCATATTCCCTAC+AGG | 0.543817 | 1_2:-29349682 | Msa0066210:intron |
| GAAGTATCGATTACAGAAGC+AGG | 0.543915 | 1_2:-29350339 | Msa0066210:intron |
| AAAGCCAGACAATTTCCTCA+TGG | 0.544831 | 1_2:-29349872 | Msa0066210:CDS |
| TGAATAAATCCTCAAGACTA+GGG | 0.545896 | 1_2:+29350082 | None:intergenic |
| ATTGTACTCTCCTTCGACAC+CGG | 0.548807 | 1_2:+29350128 | None:intergenic |
| TCTCTCCGATATTCTTTGCA+AGG | 0.551276 | 1_2:+29346750 | None:intergenic |
| GAGGATGGATGTGAGATTGA+GGG | 0.553579 | 1_2:+29350947 | None:intergenic |
| ATGAATGCTCGTCTTGGAGT+TGG | 0.561207 | 1_2:-29347840 | Msa0066210:intron |
| ATGCCATAAAAGTACCTGTA+GGG | 0.563109 | 1_2:+29349668 | None:intergenic |
| CAGAGAGAGTAAGAATCTGA+CGG | 0.570204 | 1_2:-29347883 | Msa0066210:CDS |
| AGAGTACAATATCCTAGTGA+TGG | 0.570391 | 1_2:-29350115 | Msa0066210:CDS |
| TCTCCTACTTCAGTTTCTCA+AGG | 0.577299 | 1_2:-29347011 | Msa0066210:intron |
| ATACCGAATGTGAAATGGTC+CGG | 0.578759 | 1_2:-29350147 | Msa0066210:CDS |
| AGAGAGAGTAAGAATCTGAC+GGG | 0.588015 | 1_2:-29347882 | Msa0066210:CDS |
| CTTTAATAGAGCAAAGCCGT+AGG | 0.589565 | 1_2:-29347740 | Msa0066210:intron |
| TATTTGCTTCGAGGCAGTCA+TGG | 0.593443 | 1_2:-29346629 | Msa0066210:three_prime_UTR |
| TTTAATAGAGCAAAGCCGTA+GGG | 0.604857 | 1_2:-29347739 | Msa0066210:intron |
| GGAATAAGTTCCGTCTTGGG+AGG | 0.606788 | 1_2:-29350798 | Msa0066210:CDS |
| AGCTGAAGAACTGCAAACCA+CGG | 0.611705 | 1_2:+29347033 | None:intergenic |
| TGAGAACAGTGTTGTTCGAG+AGG | 0.617577 | 1_2:-29346727 | Msa0066210:three_prime_UTR |
| AGGGATGATTTAGAGTCGCT+CGG | 0.623480 | 1_2:-29347720 | Msa0066210:CDS |
| ATTTCCTCATGGGTTTAGGG+AGG | 0.628140 | 1_2:-29349861 | Msa0066210:CDS |
| CTTGGGAGGAAAATTGGTAG+CGG | 0.633001 | 1_2:-29350784 | Msa0066210:CDS |
| GGCCAAGTAAATCCATCACT+AGG | 0.640405 | 1_2:+29350103 | None:intergenic |
| AAACAGAGCATAGCATTCTG+TGG | 0.642425 | 1_2:-29346345 | Msa0066210:three_prime_UTR |
| GCCTCGAAGCAAATATAGTG+AGG | 0.645471 | 1_2:+29346637 | None:intergenic |
| GCGACTCTAAATCATCCCTA+CGG | 0.654605 | 1_2:+29347724 | None:intergenic |
| GAGAACAGTGTTGTTCGAGA+GGG | 0.661344 | 1_2:-29346726 | Msa0066210:three_prime_UTR |
| TCATCGTAGAAGAAGAAAGG+GGG | 0.679194 | 1_2:+29350891 | None:intergenic |
| CATCGTAGAAGAAGAAAGGG+GGG | 0.702970 | 1_2:+29350892 | None:intergenic |
| GTCATCGTAGAAGAAGAAAG+GGG | 0.712245 | 1_2:+29350890 | None:intergenic |
| CACGCCTCCCTAAACCCATG+AGG | 0.721724 | 1_2:+29349857 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTTTTTTGTGAATTTT+AGG | - | chr1_2:29346595-29346614 | Msa0066210:intron | 10.0% |
| !!! | ATTTTTTTTTGTGAATTTTA+GGG | - | chr1_2:29346596-29346615 | Msa0066210:intron | 10.0% |
| !!! | TTTTTATTCTTTTGAATTTT+TGG | - | chr1_2:29346728-29346747 | Msa0066210:three_prime_UTR | 10.0% |
| !!! | AATTTTAGTTGTTATTTTAA+TGG | - | chr1_2:29348461-29348480 | Msa0066210:intron | 10.0% |
| !!! | AAAACATCATAATTTTATAT+TGG | + | chr1_2:29348517-29348536 | None:intergenic | 10.0% |
| !!! | TAAAATTATGATGTTTTTTT+TGG | - | chr1_2:29348520-29348539 | Msa0066210:intron | 10.0% |
| !! | TTGAATAAAAAGTTATTAAA+AGG | - | chr1_2:29349167-29349186 | Msa0066210:intron | 10.0% |
| !!! | CATTATCTTTTTCAAAATTT+GGG | + | chr1_2:29346695-29346714 | None:intergenic | 15.0% |
| !!! | TCATTATCTTTTTCAAAATT+TGG | + | chr1_2:29346696-29346715 | None:intergenic | 15.0% |
| !! | ATTTATTCAATTTCTGTAAT+AGG | - | chr1_2:29347231-29347250 | Msa0066210:intron | 15.0% |
| !!! | TTTTGTAAAATCTATTATCA+TGG | - | chr1_2:29347741-29347760 | Msa0066210:intron | 15.0% |
| !!! | TATTTTGTGAAATTAACTAA+GGG | - | chr1_2:29348112-29348131 | Msa0066210:intron | 15.0% |
| !! | TTTGTTAAAATATAGAGTAA+TGG | - | chr1_2:29348144-29348163 | Msa0066210:intron | 15.0% |
| !!! | AAAAAAGTGCTAAATTAAAA+TGG | + | chr1_2:29348403-29348422 | None:intergenic | 15.0% |
| !!! | GTTACTTGATATTATTTTTT+TGG | + | chr1_2:29348733-29348752 | None:intergenic | 15.0% |
| !!! | TGAATCCTTTAATATTATTT+TGG | - | chr1_2:29348947-29348966 | Msa0066210:intron | 15.0% |
| !! | GATTACCAAAATAATATTAA+AGG | + | chr1_2:29348955-29348974 | None:intergenic | 15.0% |
| !! | TTCATTTGAATCTTTATTAT+TGG | - | chr1_2:29350320-29350339 | Msa0066210:intron | 15.0% |
| !!! | ATAATCTTTGACTTATTTTT+AGG | - | chr1_2:29350912-29350931 | Msa0066210:five_prime_UTR | 15.0% |
| !! | ATTAAACCCTAATTGAAAAT+CGG | + | chr1_2:29346467-29346486 | None:intergenic | 20.0% |
| !!! | TTCTTCATTAGTTTGAATAT+TGG | + | chr1_2:29346650-29346669 | None:intergenic | 20.0% |
| !! | ATAAACAAATTCACTAAGTT+GGG | + | chr1_2:29347046-29347065 | None:intergenic | 20.0% |
| !! | AATAAACAAATTCACTAAGT+TGG | + | chr1_2:29347047-29347066 | None:intergenic | 20.0% |
| !!! | CTTAGTGAATTTGTTTATTT+TGG | - | chr1_2:29347048-29347067 | Msa0066210:three_prime_UTR | 20.0% |
| !!! | TTTTTTGATTTTATTCAGCA+TGG | - | chr1_2:29347660-29347679 | Msa0066210:intron | 20.0% |
| !!! | AAAATTCTATATCTGGAATT+TGG | - | chr1_2:29347764-29347783 | Msa0066210:intron | 20.0% |
| !! | AGTTATTATGTTTGTAAGTA+TGG | + | chr1_2:29348087-29348106 | None:intergenic | 20.0% |
| !!! | CTATTTTGTGAAATTAACTA+AGG | - | chr1_2:29348111-29348130 | Msa0066210:intron | 20.0% |
| !!! | AATTATGATGTTTTTTTTGG+TGG | - | chr1_2:29348523-29348542 | Msa0066210:intron | 20.0% |
| !!! | ATTATTTTTTTGGTTACTCA+TGG | + | chr1_2:29348723-29348742 | None:intergenic | 20.0% |
| !! | TTGATTGTATACCTATTATA+TGG | + | chr1_2:29349008-29349027 | None:intergenic | 20.0% |
| !! | GAAAAACTAATTGATACTAA+TGG | + | chr1_2:29349074-29349093 | None:intergenic | 20.0% |
| !! | GAATTTATGCCAATTAAATT+TGG | - | chr1_2:29349191-29349210 | Msa0066210:intron | 20.0% |
| !!! | AAGTGATATTTTTTTGAACA+AGG | + | chr1_2:29349273-29349292 | None:intergenic | 20.0% |
| !! | AATAAATAATCGTAAAGACT+AGG | + | chr1_2:29349298-29349317 | None:intergenic | 20.0% |
| !!! | AATATACTCTATTGTGTTTT+CGG | - | chr1_2:29349366-29349385 | Msa0066210:intron | 20.0% |
| !!! | GTTCTTATGTATTTTTTAAG+AGG | - | chr1_2:29349606-29349625 | Msa0066210:intron | 20.0% |
| !!! | TTATGTATTTTTTAAGAGGA+AGG | - | chr1_2:29349610-29349629 | Msa0066210:intron | 20.0% |
| !! | TGAGATTGAAGAATAAAATT+GGG | + | chr1_2:29349890-29349909 | None:intergenic | 20.0% |
| !!! | TATTTTTGACAAATAGCTAA+TGG | - | chr1_2:29350765-29350784 | Msa0066210:CDS | 20.0% |
| !! | TTCAATTCCGATTTTCAATT+AGG | - | chr1_2:29346457-29346476 | Msa0066210:intron | 25.0% |
| !! | TCAATTCCGATTTTCAATTA+GGG | - | chr1_2:29346458-29346477 | Msa0066210:intron | 25.0% |
| !! | GATTTTCAATTAGGGTTTAA+TGG | - | chr1_2:29346466-29346485 | Msa0066210:intron | 25.0% |
| ! | TTCACAAAAATGCAAGAAAT+TGG | + | chr1_2:29346577-29346596 | None:intergenic | 25.0% |
| !!! | TTAATTTGTGTTTTTGTTGC+AGG | - | chr1_2:29346622-29346641 | Msa0066210:three_prime_UTR | 25.0% |
| !!! | TCAATAACAACGAAAGTATT+CGG | + | chr1_2:29346766-29346785 | None:intergenic | 25.0% |
| ! | TTATTGAAGTTTGATGAGAA+GGG | - | chr1_2:29346779-29346798 | Msa0066210:intron | 25.0% |
| !! | TTTGAAACAAAGAGTTGTAT+AGG | - | chr1_2:29346859-29346878 | Msa0066210:intron | 25.0% |
| ! | TAGGTAATTAGATGATTGAT+TGG | - | chr1_2:29346987-29347006 | Msa0066210:intron | 25.0% |
| ! | AGGTAATTAGATGATTGATT+GGG | - | chr1_2:29346988-29347007 | Msa0066210:intron | 25.0% |
| ! | TAGACTTAATATTACTCACT+TGG | - | chr1_2:29347087-29347106 | Msa0066210:intron | 25.0% |
| ! | TTGAGACATTATAAGAAAAG+TGG | + | chr1_2:29347340-29347359 | None:intergenic | 25.0% |
| !!! | ATACCAAGTCATTTTTACAT+CGG | - | chr1_2:29347399-29347418 | Msa0066210:intron | 25.0% |
| ! | ATGATAGGGAATATATTGAT+GGG | + | chr1_2:29347712-29347731 | None:intergenic | 25.0% |
| !! | CAAAATAAGAAAGCATGATA+GGG | + | chr1_2:29347726-29347745 | None:intergenic | 25.0% |
| !! | ACAAAATAAGAAAGCATGAT+AGG | + | chr1_2:29347727-29347746 | None:intergenic | 25.0% |
| ! | ATCATGGAAAATTCTATATC+TGG | - | chr1_2:29347757-29347776 | Msa0066210:intron | 25.0% |
| !! | GTTATCTTTTGTATCAAACA+CGG | + | chr1_2:29348190-29348209 | None:intergenic | 25.0% |
| ! | TTTGATACAAAAGATAACAG+CGG | - | chr1_2:29348192-29348211 | Msa0066210:intron | 25.0% |
| !! | AATTTTGTACTCCAATATAG+CGG | + | chr1_2:29348271-29348290 | None:intergenic | 25.0% |
| ! | ACAAGAAGTGATAATTGTAA+GGG | + | chr1_2:29348329-29348348 | None:intergenic | 25.0% |
| ! | TACAAGAAGTGATAATTGTA+AGG | + | chr1_2:29348330-29348349 | None:intergenic | 25.0% |
| ! | AAATTAAAATGGAAAAGGCA+TGG | + | chr1_2:29348392-29348411 | None:intergenic | 25.0% |
| ! | GTGCTAAATTAAAATGGAAA+AGG | + | chr1_2:29348397-29348416 | None:intergenic | 25.0% |
| !! | ATAATTTTATATTGGACCTG+GGG | + | chr1_2:29348509-29348528 | None:intergenic | 25.0% |
| !! | CATAATTTTATATTGGACCT+GGG | + | chr1_2:29348510-29348529 | None:intergenic | 25.0% |
| !! | TCATAATTTTATATTGGACC+TGG | + | chr1_2:29348511-29348530 | None:intergenic | 25.0% |
| ! | AAAAGAAATATTACACCATG+AGG | - | chr1_2:29348766-29348785 | Msa0066210:intron | 25.0% |
| ! | AAAGAAATATTACACCATGA+GGG | - | chr1_2:29348767-29348786 | Msa0066210:intron | 25.0% |
| ! | AATTTGGACATCCATATAAT+AGG | - | chr1_2:29348994-29349013 | Msa0066210:intron | 25.0% |
| ! | CCAATGAAACCAAATTTAAT+TGG | + | chr1_2:29349203-29349222 | None:intergenic | 25.0% |
| !! | CCAATTAAATTTGGTTTCAT+TGG | - | chr1_2:29349200-29349219 | Msa0066210:intron | 25.0% |
| !!! | TGATATTTTTTTGAACAAGG+AGG | + | chr1_2:29349270-29349289 | None:intergenic | 25.0% |
| ! | AATCAATGGCTATTAAGAAA+GGG | + | chr1_2:29349514-29349533 | None:intergenic | 25.0% |
| ! | AAATCAATGGCTATTAAGAA+AGG | + | chr1_2:29349515-29349534 | None:intergenic | 25.0% |
| !!! | CATTTTCAGGTAAAAATCAA+TGG | + | chr1_2:29349528-29349547 | None:intergenic | 25.0% |
| ! | AGTCTATCACCTTTATTATT+TGG | - | chr1_2:29349638-29349657 | Msa0066210:intron | 25.0% |
| ! | TGTCAAATGCCAAATAATAA+AGG | + | chr1_2:29349650-29349669 | None:intergenic | 25.0% |
| !! | TTTTTATAGGTCATACTGAA+CGG | + | chr1_2:29349806-29349825 | None:intergenic | 25.0% |
| ! | GTGAGATTGAAGAATAAAAT+TGG | + | chr1_2:29349891-29349910 | None:intergenic | 25.0% |
| ! | CTCAAATTAAGAAATTAACC+AGG | + | chr1_2:29350143-29350162 | None:intergenic | 25.0% |
| ! | TGAAATATTTATCCACGTTT+GGG | + | chr1_2:29350635-29350654 | None:intergenic | 25.0% |
| ! | TTGAAATATTTATCCACGTT+TGG | + | chr1_2:29350636-29350655 | None:intergenic | 25.0% |
| ! | AAACGTGGATAAATATTTCA+AGG | - | chr1_2:29350635-29350654 | Msa0066210:intron | 25.0% |
| ! | TTTGTCAAAAATAACCACTA+TGG | + | chr1_2:29350796-29350815 | None:intergenic | 25.0% |
| !!! | ATCTTTGACTTATTTTTAGG+TGG | - | chr1_2:29350915-29350934 | Msa0066210:five_prime_UTR | 25.0% |
| AGTGAGATTGAAGGATATTT+AGG | + | chr1_2:29346324-29346343 | None:intergenic | 30.0% | |
| AATATCCTTCAATCTCACTA+TGG | - | chr1_2:29346325-29346344 | Msa0066210:three_prime_UTR | 30.0% | |
| GTTATTGAAGTTTGATGAGA+AGG | - | chr1_2:29346778-29346797 | Msa0066210:intron | 30.0% | |
| TATTGAAGTTTGATGAGAAG+GGG | - | chr1_2:29346780-29346799 | Msa0066210:intron | 30.0% | |
| AAAGAGTTGTATAGGCAATA+TGG | - | chr1_2:29346867-29346886 | Msa0066210:intron | 30.0% | |
| AAGAGTTGTATAGGCAATAT+GGG | - | chr1_2:29346868-29346887 | Msa0066210:intron | 30.0% | |
| TATGGGATATTGAATTTCGT+TGG | - | chr1_2:29346885-29346904 | Msa0066210:intron | 30.0% | |
| TATTACTCACTTGGCTTAAA+CGG | - | chr1_2:29347096-29347115 | Msa0066210:intron | 30.0% | |
| ! | GTTTCTTTTCTTTGTTAGCT+GGG | - | chr1_2:29347129-29347148 | Msa0066210:intron | 30.0% |
| TGAATAAATCCTCAAGACTA+GGG | + | chr1_2:29347220-29347239 | None:intergenic | 30.0% | |
| TTGAATAAATCCTCAAGACT+AGG | + | chr1_2:29347221-29347240 | None:intergenic | 30.0% | |
| !!! | TACCAAGTCATTTTTACATC+GGG | - | chr1_2:29347400-29347419 | Msa0066210:intron | 30.0% |
| AATTGATACATAACAAGCGT+TGG | + | chr1_2:29347530-29347549 | None:intergenic | 30.0% | |
| TTCATATTTGCCTCTTATGT+AGG | - | chr1_2:29347549-29347568 | Msa0066210:intron | 30.0% | |
| TGATAGGGAATATATTGATG+GGG | + | chr1_2:29347711-29347730 | None:intergenic | 30.0% | |
| CATGATAGGGAATATATTGA+TGG | + | chr1_2:29347713-29347732 | None:intergenic | 30.0% | |
| GCTGATTACTACTATTTAGT+AGG | - | chr1_2:29347820-29347839 | Msa0066210:intron | 30.0% | |
| GATTACTACTATTTAGTAGG+AGG | - | chr1_2:29347823-29347842 | Msa0066210:intron | 30.0% | |
| AAGAAAATAGAATCAATGCC+AGG | + | chr1_2:29347948-29347967 | None:intergenic | 30.0% | |
| AATGGATCTTAGTTCAAACA+AGG | + | chr1_2:29348060-29348079 | None:intergenic | 30.0% | |
| CGGAACATAACAAAAATTAG+AGG | - | chr1_2:29348212-29348231 | Msa0066210:intron | 30.0% | |
| !! | AAATTTGTTACCCGCTATAT+TGG | - | chr1_2:29348257-29348276 | Msa0066210:intron | 30.0% |
| ! | ATTTTGTACTCCAATATAGC+GGG | + | chr1_2:29348270-29348289 | None:intergenic | 30.0% |
| AATTACTATGATATCCCTCA+TGG | + | chr1_2:29348784-29348803 | None:intergenic | 30.0% | |
| ! | TTTGATTCGCAATAAAGAAC+AGG | + | chr1_2:29348908-29348927 | None:intergenic | 30.0% |
| !! | AGGATTCAAGCATTGAATTA+GGG | + | chr1_2:29348935-29348954 | None:intergenic | 30.0% |
| !! | AAGGATTCAAGCATTGAATT+AGG | + | chr1_2:29348936-29348955 | None:intergenic | 30.0% |
| ATAACTTATGTTGCTGTAAG+TGG | - | chr1_2:29349336-29349355 | Msa0066210:intron | 30.0% | |
| ! | AGCAAAAAACTCACATTTTC+AGG | + | chr1_2:29349541-29349560 | None:intergenic | 30.0% |
| CAAAATGCAGATGAATTTCA+CGG | - | chr1_2:29349728-29349747 | Msa0066210:CDS | 30.0% | |
| GGTTTCAATGTTAAATGCAA+AGG | - | chr1_2:29349749-29349768 | Msa0066210:intron | 30.0% | |
| GAAGAATAAAATTGGGCTTA+GGG | + | chr1_2:29349883-29349902 | None:intergenic | 30.0% | |
| TGAAGAATAAAATTGGGCTT+AGG | + | chr1_2:29349884-29349903 | None:intergenic | 30.0% | |
| !! | TGAGACATAGAGTATTTTGA+GGG | + | chr1_2:29350012-29350031 | None:intergenic | 30.0% |
| ! | CAATCAACTTACATTTTTCC+TGG | - | chr1_2:29350122-29350141 | Msa0066210:CDS | 30.0% |
| GATATCAGTTATGTGCAATT+GGG | - | chr1_2:29350226-29350245 | Msa0066210:intron | 30.0% | |
| TGCAGAAAGAATCAAATGAA+TGG | - | chr1_2:29350343-29350362 | Msa0066210:CDS | 30.0% | |
| GCAGAAAGAATCAAATGAAT+GGG | - | chr1_2:29350344-29350363 | Msa0066210:CDS | 30.0% | |
| ! | AAGAATCAAATGAATGGGTT+TGG | - | chr1_2:29350349-29350368 | Msa0066210:CDS | 30.0% |
| AGCACAACATACATTCATTT+AGG | + | chr1_2:29350455-29350474 | None:intergenic | 30.0% | |
| TATTTCTTCTTGTGAACGTT+TGG | - | chr1_2:29350483-29350502 | Msa0066210:intron | 30.0% | |
| ! | AATTTACCTGTCATCTTTTC+AGG | - | chr1_2:29350516-29350535 | Msa0066210:intron | 30.0% |
| TACAATGTAAGCTATAGAAC+AGG | - | chr1_2:29350719-29350738 | Msa0066210:intron | 30.0% | |
| !!! | TTATTTTTAGGTGGAAGACT+TGG | - | chr1_2:29350924-29350943 | Msa0066210:five_prime_UTR | 30.0% |
| GTTTAATGGAACCTCGAATT+GGG | - | chr1_2:29346480-29346499 | Msa0066210:intron | 35.0% | |
| !! | AAAATTGGTAGCGGATCTTT+CGG | - | chr1_2:29346524-29346543 | Msa0066210:intron | 35.0% |
| TCTTTCGGAGAGATCTATTT+AGG | - | chr1_2:29346539-29346558 | Msa0066210:intron | 35.0% | |
| ! | GTTTTCGATACTGAACTTGT+TGG | - | chr1_2:29346917-29346936 | Msa0066210:intron | 35.0% |
| GATTACAGAAGCAGGTAATT+AGG | - | chr1_2:29346968-29346987 | Msa0066210:intron | 35.0% | |
| !!! | TTGGCTTAAACGGTTTTTTC+TGG | - | chr1_2:29347106-29347125 | Msa0066210:intron | 35.0% |
| !!! | TGGCTTAAACGGTTTTTTCT+GGG | - | chr1_2:29347107-29347126 | Msa0066210:intron | 35.0% |
| ! | GGTTTCTTTTCTTTGTTAGC+TGG | - | chr1_2:29347128-29347147 | Msa0066210:intron | 35.0% |
| AGAGTACAATATCCTAGTGA+TGG | - | chr1_2:29347184-29347203 | Msa0066210:intron | 35.0% | |
| !! | ATCCTAGTGATGGATTTACT+TGG | - | chr1_2:29347194-29347213 | Msa0066210:intron | 35.0% |
| ! | TCTTATGCTTGCTGATCAAA+TGG | - | chr1_2:29347274-29347293 | Msa0066210:intron | 35.0% |
| ACAATTTCCTCATGGGTTTA+GGG | - | chr1_2:29347435-29347454 | Msa0066210:intron | 35.0% | |
| ATGATGTACACCTACATAAG+AGG | + | chr1_2:29347562-29347581 | None:intergenic | 35.0% | |
| !! | TAGGTGTACATCATTGACTT+TGG | - | chr1_2:29347568-29347587 | Msa0066210:intron | 35.0% |
| ! | ATTCCCTACAGGTACTTTTA+TGG | - | chr1_2:29347628-29347647 | Msa0066210:intron | 35.0% |
| !! | ATGCCATAAAAGTACCTGTA+GGG | + | chr1_2:29347634-29347653 | None:intergenic | 35.0% |
| ! | AGGTACTTTTATGGCATCAA+TGG | - | chr1_2:29347637-29347656 | Msa0066210:intron | 35.0% |
| GGACAAATAACTTAACGAAC+TGG | + | chr1_2:29348018-29348037 | None:intergenic | 35.0% | |
| GGCTAACAAAACTATCATCA+AGG | + | chr1_2:29348039-29348058 | None:intergenic | 35.0% | |
| GTTTGTAAGTATGGCATCAA+TGG | + | chr1_2:29348078-29348097 | None:intergenic | 35.0% | |
| ! | CAAAAATTAGAGGAGAGTAC+TGG | - | chr1_2:29348222-29348241 | Msa0066210:intron | 35.0% |
| ! | TCTTTTTCTCTCTTGTTCAG+CGG | + | chr1_2:29348298-29348317 | None:intergenic | 35.0% |
| CTGAACAAGAGAGAAAAAGA+CGG | - | chr1_2:29348298-29348317 | Msa0066210:intron | 35.0% | |
| TTTAATAGAGCAAAGCCGTA+GGG | - | chr1_2:29349560-29349579 | Msa0066210:intron | 35.0% | |
| ! | TAGGGTTTGAAGTTGTAGAA+GGG | + | chr1_2:29349865-29349884 | None:intergenic | 35.0% |
| ! | TTAGGGTTTGAAGTTGTAGA+AGG | + | chr1_2:29349866-29349885 | None:intergenic | 35.0% |
| !! | GTGAGACATAGAGTATTTTG+AGG | + | chr1_2:29350013-29350032 | None:intergenic | 35.0% |
| TAGTGAGAGACTTAGATTGA+CGG | + | chr1_2:29350035-29350054 | None:intergenic | 35.0% | |
| GATTGAATTTCTGCGATTGA+GGG | + | chr1_2:29350107-29350126 | None:intergenic | 35.0% | |
| TGATTGAATTTCTGCGATTG+AGG | + | chr1_2:29350108-29350127 | None:intergenic | 35.0% | |
| CGATATCAGTTATGTGCAAT+TGG | - | chr1_2:29350225-29350244 | Msa0066210:intron | 35.0% | |
| TTACCTTGAGAAACTGAAGT+AGG | + | chr1_2:29350294-29350313 | None:intergenic | 35.0% | |
| ! | ATGAATGGGTTTGGATTGTT+AGG | - | chr1_2:29350358-29350377 | Msa0066210:CDS | 35.0% |
| TTTGGATTGTTAGGCTCATA+AGG | - | chr1_2:29350367-29350386 | Msa0066210:CDS | 35.0% | |
| AAGATGCAATGATTCTGAAC+AGG | - | chr1_2:29350412-29350431 | Msa0066210:intron | 35.0% | |
| TAGAACAGGCTAACAAAACA+TGG | - | chr1_2:29350733-29350752 | Msa0066210:intron | 35.0% | |
| AGCTAATGGTTATTCCATAG+TGG | - | chr1_2:29350779-29350798 | Msa0066210:CDS | 35.0% | |
| ATTGAGAGTGAGATTGAGGA+TGG | + | chr1_2:29346370-29346389 | None:intergenic | 40.0% | |
| AACGATTGAGAGTGAGATTG+AGG | + | chr1_2:29346374-29346393 | None:intergenic | 40.0% | |
| TCATCGTAGAAGAAGAAAGG+GGG | + | chr1_2:29346411-29346430 | None:intergenic | 40.0% | |
| GTCATCGTAGAAGAAGAAAG+GGG | + | chr1_2:29346412-29346431 | None:intergenic | 40.0% | |
| CGTCATCGTAGAAGAAGAAA+GGG | + | chr1_2:29346413-29346432 | None:intergenic | 40.0% | |
| GGTTTAATGGAACCTCGAAT+TGG | - | chr1_2:29346479-29346498 | Msa0066210:intron | 40.0% | |
| ATTGGGAATAAGTTCCGTCT+TGG | - | chr1_2:29346497-29346516 | Msa0066210:intron | 40.0% | |
| TTGGGAATAAGTTCCGTCTT+GGG | - | chr1_2:29346498-29346517 | Msa0066210:intron | 40.0% | |
| ! | TACCAATTTTCCTCCCAAGA+CGG | + | chr1_2:29346514-29346533 | None:intergenic | 40.0% |
| !! | GAAGTATCGATTACAGAAGC+AGG | - | chr1_2:29346960-29346979 | Msa0066210:intron | 40.0% |
| !! | GATGATTGATTGGGTTAGTC+TGG | - | chr1_2:29346997-29347016 | Msa0066210:intron | 40.0% |
| ATACCGAATGTGAAATGGTC+CGG | - | chr1_2:29347152-29347171 | Msa0066210:intron | 40.0% | |
| ! | TATGCTTGCTGATCAAATGG+TGG | - | chr1_2:29347277-29347296 | Msa0066210:intron | 40.0% |
| ! | ATGCTTGCTGATCAAATGGT+GGG | - | chr1_2:29347278-29347297 | Msa0066210:intron | 40.0% |
| GTCCCGATGTAAAAATGACT+TGG | + | chr1_2:29347405-29347424 | None:intergenic | 40.0% | |
| AAAGCCAGACAATTTCCTCA+TGG | - | chr1_2:29347427-29347446 | Msa0066210:intron | 40.0% | |
| AAGCCAGACAATTTCCTCAT+GGG | - | chr1_2:29347428-29347447 | Msa0066210:intron | 40.0% | |
| AAACCCATGAGGAAATTGTC+TGG | + | chr1_2:29347434-29347453 | None:intergenic | 40.0% | |
| GACAATTTCCTCATGGGTTT+AGG | - | chr1_2:29347434-29347453 | Msa0066210:intron | 40.0% | |
| !! | GATGCCATAAAAGTACCTGT+AGG | + | chr1_2:29347635-29347654 | None:intergenic | 40.0% |
| ! | ACTAATTTTGAGCTTTGCGC+AGG | - | chr1_2:29347901-29347920 | Msa0066210:intron | 40.0% |
| ! | CTAATTTTGAGCTTTGCGCA+GGG | - | chr1_2:29347902-29347921 | Msa0066210:intron | 40.0% |
| ACTTAACGAACTGGTGTAAC+AGG | + | chr1_2:29348009-29348028 | None:intergenic | 40.0% | |
| AACACGACAAATATAACCCC+AGG | - | chr1_2:29348490-29348509 | Msa0066210:intron | 40.0% | |
| CTCATGGTGTAATATTTCGC+TGG | + | chr1_2:29348707-29348726 | None:intergenic | 40.0% | |
| TATGTTGCTGTAAGTGGTCA+AGG | - | chr1_2:29349342-29349361 | Msa0066210:intron | 40.0% | |
| GATTCTTACTCTCTCTGCAA+GGG | + | chr1_2:29349413-29349432 | None:intergenic | 40.0% | |
| AGATTCTTACTCTCTCTGCA+AGG | + | chr1_2:29349414-29349433 | None:intergenic | 40.0% | |
| CAGAGAGAGTAAGAATCTGA+CGG | - | chr1_2:29349416-29349435 | Msa0066210:intron | 40.0% | |
| AGAGAGAGTAAGAATCTGAC+GGG | - | chr1_2:29349417-29349436 | Msa0066210:intron | 40.0% | |
| CTTTAATAGAGCAAAGCCGT+AGG | - | chr1_2:29349559-29349578 | Msa0066210:intron | 40.0% | |
| ! | GGGAGTGACGAACTTTTTAT+AGG | + | chr1_2:29349819-29349838 | None:intergenic | 40.0% |
| GAGACGTACATTGAGAAAGA+GGG | + | chr1_2:29349843-29349862 | None:intergenic | 40.0% | |
| ATGAAGATCTGGGTTTCAGA+TGG | + | chr1_2:29349921-29349940 | None:intergenic | 40.0% | |
| TGTGAGAGTGATGAAGATCT+GGG | + | chr1_2:29349931-29349950 | None:intergenic | 40.0% | |
| TCACTTTCCTTCAATCTCAC+CGG | - | chr1_2:29349958-29349977 | Msa0066210:intron | 40.0% | |
| TCACCCTCAATCTTACATCT+CGG | - | chr1_2:29349984-29350003 | Msa0066210:intron | 40.0% | |
| GAACCGAGATGTAAGATTGA+GGG | + | chr1_2:29349990-29350009 | None:intergenic | 40.0% | |
| TCTCCTACTTCAGTTTCTCA+AGG | - | chr1_2:29350288-29350307 | Msa0066210:intron | 40.0% | |
| GTCAGCCTTGCAAAGAATAT+CGG | - | chr1_2:29350544-29350563 | Msa0066210:intron | 40.0% | |
| TCTCTCCGATATTCTTTGCA+AGG | + | chr1_2:29350552-29350571 | None:intergenic | 40.0% | |
| TTATCCACGTTTGGGAAAAG+TGG | + | chr1_2:29350627-29350646 | None:intergenic | 40.0% | |
| AGGCTAACAAAACATGGTCT+AGG | - | chr1_2:29350739-29350758 | Msa0066210:intron | 40.0% | |
| GGCTAACAAAACATGGTCTA+GGG | - | chr1_2:29350740-29350759 | Msa0066210:intron | 40.0% | |
| ACAGAATGCTATGCTCTGTT+TGG | + | chr1_2:29350955-29350974 | None:intergenic | 40.0% | |
| AAACAGAGCATAGCATTCTG+TGG | - | chr1_2:29350954-29350973 | Msa0066210:five_prime_UTR | 40.0% | |
| GTGAGCCATAGTGAGATTGA+AGG | + | chr1_2:29346333-29346352 | None:intergenic | 45.0% | |
| GAGGATGGATGTGAGATTGA+GGG | + | chr1_2:29346355-29346374 | None:intergenic | 45.0% | |
| TGAGGATGGATGTGAGATTG+AGG | + | chr1_2:29346356-29346375 | None:intergenic | 45.0% | |
| CATCGTAGAAGAAGAAAGGG+GGG | + | chr1_2:29346410-29346429 | None:intergenic | 45.0% | |
| GCGTCATCGTAGAAGAAGAA+AGG | + | chr1_2:29346414-29346433 | None:intergenic | 45.0% | |
| CGGAACTTATTCCCAATTCG+AGG | + | chr1_2:29346494-29346513 | None:intergenic | 45.0% | |
| TTCCGTCTTGGGAGGAAAAT+TGG | - | chr1_2:29346509-29346528 | Msa0066210:intron | 45.0% | |
| CTTGGGAGGAAAATTGGTAG+CGG | - | chr1_2:29346515-29346534 | Msa0066210:intron | 45.0% | |
| GTCTGGTAATCACCATAGTC+TGG | - | chr1_2:29347014-29347033 | Msa0066210:three_prime_UTR | 45.0% | |
| CTGGGATACCGAATGTGAAA+TGG | - | chr1_2:29347147-29347166 | Msa0066210:intron | 45.0% | |
| ACACCGGACCATTTCACATT+CGG | + | chr1_2:29347158-29347177 | None:intergenic | 45.0% | |
| ATTGTACTCTCCTTCGACAC+CGG | + | chr1_2:29347174-29347193 | None:intergenic | 45.0% | |
| GGCCAAGTAAATCCATCACT+AGG | + | chr1_2:29347199-29347218 | None:intergenic | 45.0% | |
| !! | TTTACTTGGCCCTAGTCTTG+AGG | - | chr1_2:29347208-29347227 | Msa0066210:intron | 45.0% |
| ATTTCCTCATGGGTTTAGGG+AGG | - | chr1_2:29347438-29347457 | Msa0066210:intron | 45.0% | |
| CACATCAGCATATTCCCTAC+AGG | - | chr1_2:29347617-29347636 | Msa0066210:intron | 45.0% | |
| !!! | CTTTCCTGGTTTTGCATTCC+TGG | - | chr1_2:29347927-29347946 | Msa0066210:intron | 45.0% |
| AATGCCAGGAATGCAAAACC+AGG | + | chr1_2:29347934-29347953 | None:intergenic | 45.0% | |
| CAGGACAAGCAAAACAGAAC+TGG | + | chr1_2:29348889-29348908 | None:intergenic | 45.0% | |
| TATTACACACCCCAGAGAGA+AGG | + | chr1_2:29349239-29349258 | None:intergenic | 45.0% | |
| GCTAGTATGAATGCTCGTCT+TGG | - | chr1_2:29349453-29349472 | Msa0066210:intron | 45.0% | |
| ATGAATGCTCGTCTTGGAGT+TGG | - | chr1_2:29349459-29349478 | Msa0066210:intron | 45.0% | |
| GCGACTCTAAATCATCCCTA+CGG | + | chr1_2:29349578-29349597 | None:intergenic | 45.0% | |
| ! | AGGGATGATTTAGAGTCGCT+CGG | - | chr1_2:29349579-29349598 | Msa0066210:intron | 45.0% |
| CGTACATTGAGAAAGAGGGA+GGG | + | chr1_2:29349839-29349858 | None:intergenic | 45.0% | |
| ACGTACATTGAGAAAGAGGG+AGG | + | chr1_2:29349840-29349859 | None:intergenic | 45.0% | |
| GGAGACGTACATTGAGAAAG+AGG | + | chr1_2:29349844-29349863 | None:intergenic | 45.0% | |
| GTGTGAGAGTGATGAAGATC+TGG | + | chr1_2:29349932-29349951 | None:intergenic | 45.0% | |
| GGAACCGAGATGTAAGATTG+AGG | + | chr1_2:29349991-29350010 | None:intergenic | 45.0% | |
| TTTCTGCGATTGAGGGTGAT+AGG | + | chr1_2:29350100-29350119 | None:intergenic | 45.0% | |
| !! | TGTGCAATTGGGTTTTGTCG+TGG | - | chr1_2:29350237-29350256 | Msa0066210:intron | 45.0% |
| !! | GTGCAATTGGGTTTTGTCGT+GGG | - | chr1_2:29350238-29350257 | Msa0066210:intron | 45.0% |
| AGCTGAAGAACTGCAAACCA+CGG | + | chr1_2:29350269-29350288 | None:intergenic | 45.0% | |
| CACATGCCTGAAAAGATGAC+AGG | + | chr1_2:29350525-29350544 | None:intergenic | 45.0% | |
| ! | TGAGAACAGTGTTGTTCGAG+AGG | - | chr1_2:29350572-29350591 | Msa0066210:intron | 45.0% |
| ! | GAGAACAGTGTTGTTCGAGA+GGG | - | chr1_2:29350573-29350592 | Msa0066210:intron | 45.0% |
| GCCTCACTATATTTGCTTCG+AGG | - | chr1_2:29350661-29350680 | Msa0066210:intron | 45.0% | |
| GCCTCGAAGCAAATATAGTG+AGG | + | chr1_2:29350665-29350684 | None:intergenic | 45.0% | |
| TATTTGCTTCGAGGCAGTCA+TGG | - | chr1_2:29350670-29350689 | Msa0066210:intron | 45.0% | |
| !!! | ATTTCTTTTTTTTTTTTTTT+TGG | + | chr1_2:29348755-29348774 | None:intergenic | 5.0% |
| !!! | TATTATTTTTTTAGATAATT+TGG | - | chr1_2:29348978-29348997 | Msa0066210:intron | 5.0% |
| GGAATAAGTTCCGTCTTGGG+AGG | - | chr1_2:29346501-29346520 | Msa0066210:intron | 50.0% | |
| GTTGGGAGCTTACCAGACTA+TGG | + | chr1_2:29347029-29347048 | None:intergenic | 50.0% | |
| CTGGTGTAACAGGTCATGCA+AGG | + | chr1_2:29347999-29348018 | None:intergenic | 50.0% | |
| !! | ACGAACGATTTGGTGGTGAC+AGG | + | chr1_2:29350067-29350086 | None:intergenic | 50.0% |
| ! | GGGTGAAACGAACGATTTGG+TGG | + | chr1_2:29350074-29350093 | None:intergenic | 50.0% |
| CGTGGGTGAAACGAACGATT+TGG | + | chr1_2:29350077-29350096 | None:intergenic | 50.0% | |
| !! | GCTTCCACTTTTCCCAAACG+TGG | - | chr1_2:29350620-29350639 | Msa0066210:intron | 50.0% |
| AGAAGAAAGGGGGGAGAGTG+AGG | + | chr1_2:29346401-29346420 | None:intergenic | 55.0% | |
| ! | GTGAAATGGTCCGGTGTCGA+AGG | - | chr1_2:29347161-29347180 | Msa0066210:intron | 55.0% |
| CTTTGCGCAGGGAACTTTCC+TGG | - | chr1_2:29347913-29347932 | Msa0066210:intron | 55.0% | |
| CCAGAGAGAAGGAGAGAGTC+GGG | + | chr1_2:29349228-29349247 | None:intergenic | 55.0% | |
| CCCAGAGAGAAGGAGAGAGT+CGG | + | chr1_2:29349229-29349248 | None:intergenic | 55.0% | |
| CCGACTCTCTCCTTCTCTCT+GGG | - | chr1_2:29349226-29349245 | Msa0066210:intron | 55.0% | |
| CGACTCTCTCCTTCTCTCTG+GGG | - | chr1_2:29349227-29349246 | Msa0066210:intron | 55.0% | |
| GTAAGATTGAGGGTGAGCGC+CGG | + | chr1_2:29349980-29349999 | None:intergenic | 55.0% | |
| !! | GATTTGGTGGTGACAGGCGA+GGG | + | chr1_2:29350061-29350080 | None:intergenic | 55.0% |
| CGATTGAGGGTGATAGGCGT+GGG | + | chr1_2:29350094-29350113 | None:intergenic | 55.0% | |
| ! | TTTTGTCGTGGGTTTCGCCG+TGG | - | chr1_2:29350249-29350268 | Msa0066210:intron | 55.0% |
| CTTCGAGGCAGTCATGGAGA+AGG | - | chr1_2:29350676-29350695 | Msa0066210:intron | 55.0% | |
| CACGCCTCCCTAAACCCATG+AGG | + | chr1_2:29347445-29347464 | None:intergenic | 60.0% | |
| CCCGACTCTCTCCTTCTCTC+TGG | - | chr1_2:29349225-29349244 | Msa0066210:intron | 60.0% | |
| !! | GTGAGCGCCGGTGAGATTGA+AGG | + | chr1_2:29349968-29349987 | None:intergenic | 60.0% |
| !! | CGATTTGGTGGTGACAGGCG+AGG | + | chr1_2:29350062-29350081 | None:intergenic | 60.0% |
| GCGATTGAGGGTGATAGGCG+TGG | + | chr1_2:29350095-29350114 | None:intergenic | 60.0% | |
| !! | TTGGTGGTGACAGGCGAGGG+TGG | + | chr1_2:29350058-29350077 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 29346307 | 29351014 | 29346307 | ID=Msa0066210;Name=Msa0066210 |
| chr1_2 | mRNA | 29346307 | 29351014 | 29346307 | ID=Msa0066210-mRNA-1;Parent=Msa0066210;Name=Msa0066210-mRNA-1;_AED=0.12;_eAED=0.12;_QI=178|0.81|0.83|1|0.72|0.75|12|387|207 |
| chr1_2 | exon | 29346307 | 29346387 | 29346307 | ID=Msa0066210-mRNA-1:exon:9939;Parent=Msa0066210-mRNA-1 |
| chr1_2 | exon | 29346597 | 29346783 | 29346597 | ID=Msa0066210-mRNA-1:exon:9938;Parent=Msa0066210-mRNA-1 |
| chr1_2 | exon | 29347012 | 29347101 | 29347012 | ID=Msa0066210-mRNA-1:exon:9937;Parent=Msa0066210-mRNA-1 |
| chr1_2 | exon | 29347551 | 29347583 | 29347551 | ID=Msa0066210-mRNA-1:exon:9936;Parent=Msa0066210-mRNA-1 |
| chr1_2 | exon | 29347690 | 29347753 | 29347690 | ID=Msa0066210-mRNA-1:exon:9935;Parent=Msa0066210-mRNA-1 |
| chr1_2 | exon | 29347841 | 29347902 | 29347841 | ID=Msa0066210-mRNA-1:exon:9934;Parent=Msa0066210-mRNA-1 |
| chr1_2 | exon | 29349683 | 29349750 | 29349683 | ID=Msa0066210-mRNA-1:exon:9933;Parent=Msa0066210-mRNA-1 |
| chr1_2 | exon | 29349849 | 29349944 | 29349849 | ID=Msa0066210-mRNA-1:exon:9932;Parent=Msa0066210-mRNA-1 |
| chr1_2 | exon | 29350026 | 29350174 | 29350026 | ID=Msa0066210-mRNA-1:exon:9931;Parent=Msa0066210-mRNA-1 |
| chr1_2 | exon | 29350340 | 29350403 | 29350340 | ID=Msa0066210-mRNA-1:exon:9930;Parent=Msa0066210-mRNA-1 |
| chr1_2 | exon | 29350637 | 29350677 | 29350637 | ID=Msa0066210-mRNA-1:exon:9929;Parent=Msa0066210-mRNA-1 |
| chr1_2 | exon | 29350761 | 29351014 | 29350761 | ID=Msa0066210-mRNA-1:exon:9928;Parent=Msa0066210-mRNA-1 |
| chr1_2 | five_prime_UTR | 29350837 | 29351014 | 29350837 | ID=Msa0066210-mRNA-1:five_prime_utr;Parent=Msa0066210-mRNA-1 |
| chr1_2 | CDS | 29350761 | 29350836 | 29350761 | ID=Msa0066210-mRNA-1:cds;Parent=Msa0066210-mRNA-1 |
| chr1_2 | CDS | 29350637 | 29350677 | 29350637 | ID=Msa0066210-mRNA-1:cds;Parent=Msa0066210-mRNA-1 |
| chr1_2 | CDS | 29350340 | 29350403 | 29350340 | ID=Msa0066210-mRNA-1:cds;Parent=Msa0066210-mRNA-1 |
| chr1_2 | CDS | 29350026 | 29350174 | 29350026 | ID=Msa0066210-mRNA-1:cds;Parent=Msa0066210-mRNA-1 |
| chr1_2 | CDS | 29349849 | 29349944 | 29349849 | ID=Msa0066210-mRNA-1:cds;Parent=Msa0066210-mRNA-1 |
| chr1_2 | CDS | 29349683 | 29349750 | 29349683 | ID=Msa0066210-mRNA-1:cds;Parent=Msa0066210-mRNA-1 |
| chr1_2 | CDS | 29347841 | 29347902 | 29347841 | ID=Msa0066210-mRNA-1:cds;Parent=Msa0066210-mRNA-1 |
| chr1_2 | CDS | 29347690 | 29347753 | 29347690 | ID=Msa0066210-mRNA-1:cds;Parent=Msa0066210-mRNA-1 |
| chr1_2 | CDS | 29347580 | 29347583 | 29347580 | ID=Msa0066210-mRNA-1:cds;Parent=Msa0066210-mRNA-1 |
| chr1_2 | three_prime_UTR | 29347551 | 29347579 | 29347551 | ID=Msa0066210-mRNA-1:three_prime_utr;Parent=Msa0066210-mRNA-1 |
| chr1_2 | three_prime_UTR | 29347012 | 29347101 | 29347012 | ID=Msa0066210-mRNA-1:three_prime_utr;Parent=Msa0066210-mRNA-1 |
| chr1_2 | three_prime_UTR | 29346597 | 29346783 | 29346597 | ID=Msa0066210-mRNA-1:three_prime_utr;Parent=Msa0066210-mRNA-1 |
| chr1_2 | three_prime_UTR | 29346307 | 29346387 | 29346307 | ID=Msa0066210-mRNA-1:three_prime_utr;Parent=Msa0066210-mRNA-1 |
| Gene Sequence |
| Protein sequence |
