Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0066910 | XP_013467138.1 | 69.595 | 296 | 36 | 3 | 1 | 256 | 1 | 282 | 5.92e-108 | 325 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0066910 | sp|Q9M8K2|REM21_ARATH | 29.221 | 154 | 94 | 2 | 6 | 159 | 23 | 161 | 8.09e-14 | 73.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0066910 | A0A072VGJ6 | 69.595 | 296 | 36 | 3 | 1 | 256 | 1 | 282 | 2.83e-108 | 325 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0066910 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0066910 | MtrunA17_Chr1g0169081 | 69.595 | 296 | 36 | 3 | 1 | 256 | 1 | 282 | 5.45e-112 | 325 |
| Msa0066910 | MtrunA17_Chr1g0169161 | 55.670 | 291 | 88 | 3 | 2 | 255 | 5 | 291 | 5.74e-90 | 270 |
| Msa0066910 | MtrunA17_Chr1g0169171 | 51.351 | 259 | 92 | 2 | 31 | 255 | 1 | 259 | 5.30e-71 | 220 |
| Msa0066910 | MtrunA17_Chr3g0125161 | 72.034 | 118 | 33 | 0 | 2 | 119 | 16 | 133 | 3.31e-54 | 172 |
| Msa0066910 | MtrunA17_Chr3g0125151 | 47.619 | 84 | 16 | 2 | 198 | 255 | 1 | 82 | 8.21e-17 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0066910 | AT3G06160.1 | 29.221 | 154 | 94 | 2 | 6 | 159 | 23 | 161 | 8.23e-15 | 73.6 |
| Msa0066910 | AT3G06160.5 | 29.221 | 154 | 94 | 2 | 6 | 159 | 8 | 146 | 8.39e-15 | 73.6 |
| Msa0066910 | AT3G06160.4 | 29.221 | 154 | 94 | 2 | 6 | 159 | 8 | 146 | 8.39e-15 | 73.6 |
| Msa0066910 | AT3G06160.3 | 29.221 | 154 | 94 | 2 | 6 | 159 | 8 | 146 | 8.39e-15 | 73.6 |
| Msa0066910 | AT3G06160.2 | 29.221 | 154 | 94 | 2 | 6 | 159 | 67 | 205 | 1.66e-14 | 73.2 |
| Msa0066910 | AT3G18960.1 | 38.614 | 101 | 58 | 3 | 8 | 107 | 30 | 127 | 1.42e-11 | 62.8 |
| Msa0066910 | AT3G18960.2 | 38.614 | 101 | 58 | 3 | 8 | 107 | 30 | 127 | 1.90e-11 | 62.4 |
| Msa0066910 | AT5G66980.1 | 24.380 | 242 | 162 | 8 | 1 | 226 | 4 | 240 | 4.83e-11 | 62.8 |
Find 49 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAAGTTCATAAAAGCATT+TGG | 0.283969 | 1_2:+31134946 | None:intergenic |
| TAGAGAAGAAAATTCTTTAG+AGG | 0.312899 | 1_2:-31134803 | Msa0066910:CDS |
| TGCTGCTGATGATGATATTA+TGG | 0.325258 | 1_2:-31134587 | Msa0066910:CDS |
| AAGAATTGTACCAATTCATT+AGG | 0.342988 | 1_2:+31134232 | None:intergenic |
| CGAGAATGAAAGAATGTATA+AGG | 0.343428 | 1_2:-31134518 | Msa0066910:CDS |
| TGAACTTGATGCGTTCAAAA+AGG | 0.345818 | 1_2:-31134933 | Msa0066910:CDS |
| GCAATAAAGTGTGGATTTCC+CGG | 0.353942 | 1_2:+31134274 | None:intergenic |
| TGCTGAAATGTATATTCAAC+CGG | 0.363963 | 1_2:-31134293 | Msa0066910:CDS |
| GAGATCGCAGGGGAAGATAT+TGG | 0.394933 | 1_2:-31134885 | Msa0066910:CDS |
| ATCTTCCCCTGCGATCTCTT+AGG | 0.396615 | 1_2:+31134890 | None:intergenic |
| TCAAGTTCATAAAAGCATTT+GGG | 0.400504 | 1_2:+31134947 | None:intergenic |
| CCATTCCCGACCTAATGAAT+TGG | 0.410507 | 1_2:-31134242 | Msa0066910:intron |
| TTGTGGCAAGATGTGATGAT+AGG | 0.410860 | 1_2:+31133837 | None:intergenic |
| ATATGTGTTGTGCTTATTTG+TGG | 0.421461 | 1_2:+31133820 | None:intergenic |
| ATATTGAAAACAACAAATTC+AGG | 0.439326 | 1_2:-31134756 | Msa0066910:CDS |
| TATGATGGAGGATGAGGAAG+AGG | 0.443474 | 1_2:-31134665 | Msa0066910:CDS |
| TTGTACCAATTCATTAGGTC+GGG | 0.455030 | 1_2:+31134237 | None:intergenic |
| CATGTCAAAGCTCATCGTAT+TGG | 0.475966 | 1_2:-31134862 | Msa0066910:CDS |
| GAAGAAGTCTGGGTAATCCT+TGG | 0.492866 | 1_2:+31135220 | None:intergenic |
| ACGGTCGAGTACGGTGTGCT+AGG | 0.496336 | 1_2:-31133765 | Msa0066910:CDS |
| TAATAATATGATGGAGGATG+AGG | 0.497070 | 1_2:-31134671 | Msa0066910:CDS |
| ATTGTACCAATTCATTAGGT+CGG | 0.497815 | 1_2:+31134236 | None:intergenic |
| CCAATTCATTAGGTCGGGAA+TGG | 0.499110 | 1_2:+31134242 | None:intergenic |
| AGAAGAAAATTCTTTAGAGG+AGG | 0.500908 | 1_2:-31134800 | Msa0066910:CDS |
| GGAGGAAAATAATAATATGA+TGG | 0.518357 | 1_2:-31134680 | Msa0066910:CDS |
| TCGAGTACGGTGTGCTAGGG+TGG | 0.519759 | 1_2:-31133761 | Msa0066910:CDS |
| ATCAATGTGTGAAAAGAAGA+AGG | 0.520397 | 1_2:-31134713 | Msa0066910:CDS |
| CGTCTCTCCACGTACGTACA+TGG | 0.528775 | 1_2:+31133785 | None:intergenic |
| AGAGAAGCACGCTGAAAGAA+TGG | 0.532134 | 1_2:-31135183 | Msa0066910:intron |
| GATGAGGAAGAGGACGATGA+TGG | 0.534431 | 1_2:-31134655 | Msa0066910:CDS |
| CGGTCGAGTACGGTGTGCTA+GGG | 0.537304 | 1_2:-31133764 | Msa0066910:CDS |
| CGAGTACGGTGTGCTAGGGT+GGG | 0.545023 | 1_2:-31133760 | Msa0066910:CDS |
| GGAAAATAATAATATGATGG+AGG | 0.559551 | 1_2:-31134677 | Msa0066910:CDS |
| CGTGGAGAGACGGTCGAGTA+CGG | 0.571278 | 1_2:-31133774 | Msa0066910:CDS |
| GCCGTCATCACCATCACCAT+TGG | 0.574672 | 1_2:+31134543 | None:intergenic |
| GAAGAAGGTAAGTGACGTGG+AGG | 0.599885 | 1_2:-31134698 | Msa0066910:CDS |
| AATTGTAACTAAGATGGCCA+AGG | 0.605912 | 1_2:-31135237 | None:intergenic |
| ACCAATGGTGATGGTGATGA+CGG | 0.607997 | 1_2:-31134544 | Msa0066910:CDS |
| TGTGGCAAGATGTGATGATA+GGG | 0.620951 | 1_2:+31133838 | None:intergenic |
| GAAGAACATCATGATACCAA+TGG | 0.623557 | 1_2:-31134559 | Msa0066910:CDS |
| TGATGATGATATTATGGCAG+AGG | 0.627493 | 1_2:-31134581 | Msa0066910:CDS |
| TCTTTCAGCGTGCTTCTCTG+AGG | 0.632246 | 1_2:+31135187 | None:intergenic |
| CATCATGATACCAATGGTGA+TGG | 0.638805 | 1_2:-31134553 | Msa0066910:CDS |
| AGAGAGGCCATGTACGTACG+TGG | 0.642453 | 1_2:-31133792 | Msa0066910:CDS |
| GCTGAAATGTATATTCAACC+GGG | 0.649231 | 1_2:-31134292 | Msa0066910:CDS |
| AAAGAAGAAGGTAAGTGACG+TGG | 0.663180 | 1_2:-31134701 | Msa0066910:CDS |
| CATGTACGTACGTGGAGAGA+CGG | 0.676803 | 1_2:-31133784 | Msa0066910:CDS |
| ACAACACATATCGAAAAGAG+AGG | 0.679363 | 1_2:-31133808 | Msa0066910:CDS |
| TTTATCCTAAGAGATCGCAG+GGG | 0.779931 | 1_2:-31134895 | Msa0066910:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAGAAAAAAAAAATAATTGG+AGG | + | chr1_2:31133819-31133838 | None:intergenic | 15.0% |
| !! | TAGAAAAAAAAAATAATTGG+AGG | + | chr1_2:31133819-31133838 | None:intergenic | 15.0% |
| !!! | TTTTGATAAAAAAACCAGTT+TGG | - | chr1_2:31133842-31133861 | Msa0066910:CDS | 20.0% |
| !! | TTTCAATATGTGTAAAAACA+AGG | + | chr1_2:31134180-31134199 | None:intergenic | 20.0% |
| !! | ATATTGAAAACAACAAATTC+AGG | - | chr1_2:31134191-31134210 | Msa0066910:intron | 20.0% |
| !!! | ATTTACCTGATGATTTATTT+TGG | - | chr1_2:31134574-31134593 | Msa0066910:CDS | 20.0% |
| !!! | ATATATTTTGCAATAAAGTG+TGG | + | chr1_2:31134685-31134704 | None:intergenic | 20.0% |
| !!! | CTAAATCAACATTTTAGTAT+GGG | + | chr1_2:31134746-31134765 | None:intergenic | 20.0% |
| !!! | ACTAAATCAACATTTTAGTA+TGG | + | chr1_2:31134747-31134766 | None:intergenic | 20.0% |
| !! | TGATAATTGTGAAAAATGAA+AGG | + | chr1_2:31135020-31135039 | None:intergenic | 20.0% |
| !!! | TTTTGATAAAAAAACCAGTT+TGG | - | chr1_2:31133842-31133861 | Msa0066910:CDS | 20.0% |
| !! | TTTCAATATGTGTAAAAACA+AGG | + | chr1_2:31134180-31134199 | None:intergenic | 20.0% |
| !! | ATATTGAAAACAACAAATTC+AGG | - | chr1_2:31134191-31134210 | Msa0066910:intron | 20.0% |
| !!! | ATTTACCTGATGATTTATTT+TGG | - | chr1_2:31134574-31134593 | Msa0066910:CDS | 20.0% |
| !!! | ATATATTTTGCAATAAAGTG+TGG | + | chr1_2:31134685-31134704 | None:intergenic | 20.0% |
| !!! | CTAAATCAACATTTTAGTAT+GGG | + | chr1_2:31134746-31134765 | None:intergenic | 20.0% |
| !!! | ACTAAATCAACATTTTAGTA+TGG | + | chr1_2:31134747-31134766 | None:intergenic | 20.0% |
| !! | TGATAATTGTGAAAAATGAA+AGG | + | chr1_2:31135020-31135039 | None:intergenic | 20.0% |
| !! | AAAAAACTTTGAAGAAGTCT+GGG | + | chr1_2:31133740-31133759 | None:intergenic | 25.0% |
| ! | AAAAATAATTGGAGGAAGAA+TGG | + | chr1_2:31133811-31133830 | None:intergenic | 25.0% |
| !!! | TCAAGTTCATAAAAGCATTT+GGG | + | chr1_2:31134003-31134022 | None:intergenic | 25.0% |
| !!! | ATCAAGTTCATAAAAGCATT+TGG | + | chr1_2:31134004-31134023 | None:intergenic | 25.0% |
| ! | TTCAAAAAGGAAGGTAATAA+AGG | - | chr1_2:31134027-31134046 | Msa0066910:intron | 25.0% |
| ! | TAGAGAAGAAAATTCTTTAG+AGG | - | chr1_2:31134144-31134163 | Msa0066910:intron | 25.0% |
| ! | GGAGGAAAATAATAATATGA+TGG | - | chr1_2:31134267-31134286 | Msa0066910:CDS | 25.0% |
| ! | GGAAAATAATAATATGATGG+AGG | - | chr1_2:31134270-31134289 | Msa0066910:CDS | 25.0% |
| ! | CTAAACCAAAATAAATCATC+AGG | + | chr1_2:31134582-31134601 | None:intergenic | 25.0% |
| !!! | GATGATTTATTTTGGTTTAG+CGG | - | chr1_2:31134582-31134601 | Msa0066910:CDS | 25.0% |
| ! | AAGAATTGTACCAATTCATT+AGG | + | chr1_2:31134718-31134737 | None:intergenic | 25.0% |
| ! | ACAATCATTTCATGTTATCA+AGG | - | chr1_2:31134827-31134846 | Msa0066910:CDS | 25.0% |
| ! | TATTCCAAAGAATGTTATCA+AGG | - | chr1_2:31134923-31134942 | Msa0066910:CDS | 25.0% |
| !! | AAATCCTTGATAACATTCTT+TGG | + | chr1_2:31134930-31134949 | None:intergenic | 25.0% |
| !!! | TTGTTACATTCATCCTTTTT+TGG | - | chr1_2:31135053-31135072 | Msa0066910:intron | 25.0% |
| !! | AAAAAACTTTGAAGAAGTCT+GGG | + | chr1_2:31133740-31133759 | None:intergenic | 25.0% |
| ! | AAAAATAATTGGAGGAAGAA+TGG | + | chr1_2:31133811-31133830 | None:intergenic | 25.0% |
| !!! | TCAAGTTCATAAAAGCATTT+GGG | + | chr1_2:31134003-31134022 | None:intergenic | 25.0% |
| !!! | ATCAAGTTCATAAAAGCATT+TGG | + | chr1_2:31134004-31134023 | None:intergenic | 25.0% |
| ! | TTCAAAAAGGAAGGTAATAA+AGG | - | chr1_2:31134027-31134046 | Msa0066910:intron | 25.0% |
| ! | TAGAGAAGAAAATTCTTTAG+AGG | - | chr1_2:31134144-31134163 | Msa0066910:intron | 25.0% |
| ! | GGAGGAAAATAATAATATGA+TGG | - | chr1_2:31134267-31134286 | Msa0066910:CDS | 25.0% |
| ! | GGAAAATAATAATATGATGG+AGG | - | chr1_2:31134270-31134289 | Msa0066910:CDS | 25.0% |
| ! | CTAAACCAAAATAAATCATC+AGG | + | chr1_2:31134582-31134601 | None:intergenic | 25.0% |
| !!! | GATGATTTATTTTGGTTTAG+CGG | - | chr1_2:31134582-31134601 | Msa0066910:CDS | 25.0% |
| ! | AAGAATTGTACCAATTCATT+AGG | + | chr1_2:31134718-31134737 | None:intergenic | 25.0% |
| ! | ACAATCATTTCATGTTATCA+AGG | - | chr1_2:31134827-31134846 | Msa0066910:CDS | 25.0% |
| ! | TATTCCAAAGAATGTTATCA+AGG | - | chr1_2:31134923-31134942 | Msa0066910:CDS | 25.0% |
| !! | AAATCCTTGATAACATTCTT+TGG | + | chr1_2:31134930-31134949 | None:intergenic | 25.0% |
| !!! | TTGTTACATTCATCCTTTTT+TGG | - | chr1_2:31135053-31135072 | Msa0066910:intron | 25.0% |
| ! | GAAAAAACTTTGAAGAAGTC+TGG | + | chr1_2:31133741-31133760 | None:intergenic | 30.0% |
| TATATCTTTGCATACCAAAC+TGG | + | chr1_2:31133859-31133878 | None:intergenic | 30.0% | |
| !!! | GATGAGCTTTATTTTGATGA+TGG | - | chr1_2:31134109-31134128 | Msa0066910:intron | 30.0% |
| !!! | AGCTTTATTTTGATGATGGT+TGG | - | chr1_2:31134113-31134132 | Msa0066910:intron | 30.0% |
| ! | AGAAGAAAATTCTTTAGAGG+AGG | - | chr1_2:31134147-31134166 | Msa0066910:intron | 30.0% |
| ATCAATGTGTGAAAAGAAGA+AGG | - | chr1_2:31134234-31134253 | Msa0066910:intron | 30.0% | |
| ! | TAATAATATGATGGAGGATG+AGG | - | chr1_2:31134276-31134295 | Msa0066910:CDS | 30.0% |
| CGAGAATGAAAGAATGTATA+AGG | - | chr1_2:31134429-31134448 | Msa0066910:intron | 30.0% | |
| TGCTGAAATGTATATTCAAC+CGG | - | chr1_2:31134654-31134673 | Msa0066910:CDS | 30.0% | |
| ATTGTACCAATTCATTAGGT+CGG | + | chr1_2:31134714-31134733 | None:intergenic | 30.0% | |
| ATTAGAATTATGCCTTACAG+TGG | + | chr1_2:31134992-31135011 | None:intergenic | 30.0% | |
| ATATGTGTTGTGCTTATTTG+TGG | + | chr1_2:31135130-31135149 | None:intergenic | 30.0% | |
| ! | GAAAAAACTTTGAAGAAGTC+TGG | + | chr1_2:31133741-31133760 | None:intergenic | 30.0% |
| TATATCTTTGCATACCAAAC+TGG | + | chr1_2:31133859-31133878 | None:intergenic | 30.0% | |
| !!! | GATGAGCTTTATTTTGATGA+TGG | - | chr1_2:31134109-31134128 | Msa0066910:intron | 30.0% |
| !!! | AGCTTTATTTTGATGATGGT+TGG | - | chr1_2:31134113-31134132 | Msa0066910:intron | 30.0% |
| ! | AGAAGAAAATTCTTTAGAGG+AGG | - | chr1_2:31134147-31134166 | Msa0066910:intron | 30.0% |
| ATCAATGTGTGAAAAGAAGA+AGG | - | chr1_2:31134234-31134253 | Msa0066910:intron | 30.0% | |
| ! | TAATAATATGATGGAGGATG+AGG | - | chr1_2:31134276-31134295 | Msa0066910:CDS | 30.0% |
| CGAGAATGAAAGAATGTATA+AGG | - | chr1_2:31134429-31134448 | Msa0066910:intron | 30.0% | |
| TGCTGAAATGTATATTCAAC+CGG | - | chr1_2:31134654-31134673 | Msa0066910:CDS | 30.0% | |
| ATTGTACCAATTCATTAGGT+CGG | + | chr1_2:31134714-31134733 | None:intergenic | 30.0% | |
| ATTAGAATTATGCCTTACAG+TGG | + | chr1_2:31134992-31135011 | None:intergenic | 30.0% | |
| ATATGTGTTGTGCTTATTTG+TGG | + | chr1_2:31135130-31135149 | None:intergenic | 30.0% | |
| CTGAGGAGATAACATTACTT+GGG | + | chr1_2:31133888-31133907 | None:intergenic | 35.0% | |
| TCTGAGGAGATAACATTACT+TGG | + | chr1_2:31133889-31133908 | None:intergenic | 35.0% | |
| AATACACTTCTTAGACTCTG+AGG | + | chr1_2:31133905-31133924 | None:intergenic | 35.0% | |
| TGAACTTGATGCGTTCAAAA+AGG | - | chr1_2:31134014-31134033 | Msa0066910:intron | 35.0% | |
| ! | ATTTTATCCTAAGAGATCGC+AGG | - | chr1_2:31134050-31134069 | Msa0066910:intron | 35.0% |
| ! | TTTTATCCTAAGAGATCGCA+GGG | - | chr1_2:31134051-31134070 | Msa0066910:intron | 35.0% |
| ! | TGCTGCTGATGATGATATTA+TGG | - | chr1_2:31134360-31134379 | Msa0066910:intron | 35.0% |
| ! | TGATGATGATATTATGGCAG+AGG | - | chr1_2:31134366-31134385 | Msa0066910:intron | 35.0% |
| GAAGAACATCATGATACCAA+TGG | - | chr1_2:31134388-31134407 | Msa0066910:intron | 35.0% | |
| !!! | TATTTTGGTTTAGCGGACAT+TGG | - | chr1_2:31134589-31134608 | Msa0066910:CDS | 35.0% |
| !!! | ATTTTGGTTTAGCGGACATT+GGG | - | chr1_2:31134590-31134609 | Msa0066910:CDS | 35.0% |
| GCTGAAATGTATATTCAACC+GGG | - | chr1_2:31134655-31134674 | Msa0066910:CDS | 35.0% | |
| TTGTACCAATTCATTAGGTC+GGG | + | chr1_2:31134713-31134732 | None:intergenic | 35.0% | |
| AAACTGAAATTGCAACCACT+TGG | + | chr1_2:31134798-31134817 | None:intergenic | 35.0% | |
| ! | TGACATGTTTTGTAAAGCAG+AGG | + | chr1_2:31134956-31134975 | None:intergenic | 35.0% |
| !!! | CATCCTTTTTTGGTTATGAC+AGG | - | chr1_2:31135063-31135082 | Msa0066910:intron | 35.0% |
| TCTCCTGTCATAACCAAAAA+AGG | + | chr1_2:31135069-31135088 | None:intergenic | 35.0% | |
| ACAACACATATCGAAAAGAG+AGG | - | chr1_2:31135139-31135158 | Msa0066910:intron | 35.0% | |
| CTGAGGAGATAACATTACTT+GGG | + | chr1_2:31133888-31133907 | None:intergenic | 35.0% | |
| TCTGAGGAGATAACATTACT+TGG | + | chr1_2:31133889-31133908 | None:intergenic | 35.0% | |
| AATACACTTCTTAGACTCTG+AGG | + | chr1_2:31133905-31133924 | None:intergenic | 35.0% | |
| TGAACTTGATGCGTTCAAAA+AGG | - | chr1_2:31134014-31134033 | Msa0066910:intron | 35.0% | |
| ! | ATTTTATCCTAAGAGATCGC+AGG | - | chr1_2:31134050-31134069 | Msa0066910:intron | 35.0% |
| ! | TTTTATCCTAAGAGATCGCA+GGG | - | chr1_2:31134051-31134070 | Msa0066910:intron | 35.0% |
| ! | TGCTGCTGATGATGATATTA+TGG | - | chr1_2:31134360-31134379 | Msa0066910:intron | 35.0% |
| ! | TGATGATGATATTATGGCAG+AGG | - | chr1_2:31134366-31134385 | Msa0066910:intron | 35.0% |
| GAAGAACATCATGATACCAA+TGG | - | chr1_2:31134388-31134407 | Msa0066910:intron | 35.0% | |
| !!! | TATTTTGGTTTAGCGGACAT+TGG | - | chr1_2:31134589-31134608 | Msa0066910:CDS | 35.0% |
| !!! | ATTTTGGTTTAGCGGACATT+GGG | - | chr1_2:31134590-31134609 | Msa0066910:CDS | 35.0% |
| GCTGAAATGTATATTCAACC+GGG | - | chr1_2:31134655-31134674 | Msa0066910:CDS | 35.0% | |
| TTGTACCAATTCATTAGGTC+GGG | + | chr1_2:31134713-31134732 | None:intergenic | 35.0% | |
| AAACTGAAATTGCAACCACT+TGG | + | chr1_2:31134798-31134817 | None:intergenic | 35.0% | |
| ! | TGACATGTTTTGTAAAGCAG+AGG | + | chr1_2:31134956-31134975 | None:intergenic | 35.0% |
| !!! | CATCCTTTTTTGGTTATGAC+AGG | - | chr1_2:31135063-31135082 | Msa0066910:intron | 35.0% |
| TCTCCTGTCATAACCAAAAA+AGG | + | chr1_2:31135069-31135088 | None:intergenic | 35.0% | |
| ACAACACATATCGAAAAGAG+AGG | - | chr1_2:31135139-31135158 | Msa0066910:intron | 35.0% | |
| CTTGATGCGTTCAAAAAGGA+AGG | - | chr1_2:31134018-31134037 | Msa0066910:intron | 40.0% | |
| TTTATCCTAAGAGATCGCAG+GGG | - | chr1_2:31134052-31134071 | Msa0066910:intron | 40.0% | |
| CATGTCAAAGCTCATCGTAT+TGG | - | chr1_2:31134085-31134104 | Msa0066910:intron | 40.0% | |
| AAAGAAGAAGGTAAGTGACG+TGG | - | chr1_2:31134246-31134265 | Msa0066910:CDS | 40.0% | |
| CATCATGATACCAATGGTGA+TGG | - | chr1_2:31134394-31134413 | Msa0066910:intron | 40.0% | |
| GCAATAAAGTGTGGATTTCC+CGG | + | chr1_2:31134676-31134695 | None:intergenic | 40.0% | |
| ATGACTCTAAACAAGCCAAG+TGG | - | chr1_2:31134780-31134799 | Msa0066910:CDS | 40.0% | |
| TGTGGCAAGATGTGATGATA+GGG | + | chr1_2:31135112-31135131 | None:intergenic | 40.0% | |
| TTGTGGCAAGATGTGATGAT+AGG | + | chr1_2:31135113-31135132 | None:intergenic | 40.0% | |
| CTTGATGCGTTCAAAAAGGA+AGG | - | chr1_2:31134018-31134037 | Msa0066910:intron | 40.0% | |
| TTTATCCTAAGAGATCGCAG+GGG | - | chr1_2:31134052-31134071 | Msa0066910:intron | 40.0% | |
| CATGTCAAAGCTCATCGTAT+TGG | - | chr1_2:31134085-31134104 | Msa0066910:intron | 40.0% | |
| AAAGAAGAAGGTAAGTGACG+TGG | - | chr1_2:31134246-31134265 | Msa0066910:CDS | 40.0% | |
| CATCATGATACCAATGGTGA+TGG | - | chr1_2:31134394-31134413 | Msa0066910:intron | 40.0% | |
| GCAATAAAGTGTGGATTTCC+CGG | + | chr1_2:31134676-31134695 | None:intergenic | 40.0% | |
| ATGACTCTAAACAAGCCAAG+TGG | - | chr1_2:31134780-31134799 | Msa0066910:CDS | 40.0% | |
| TGTGGCAAGATGTGATGATA+GGG | + | chr1_2:31135112-31135131 | None:intergenic | 40.0% | |
| TTGTGGCAAGATGTGATGAT+AGG | + | chr1_2:31135113-31135132 | None:intergenic | 40.0% | |
| GAAGAAGTCTGGGTAATCCT+TGG | + | chr1_2:31133730-31133749 | None:intergenic | 45.0% | |
| ! | AGAGAAGCACGCTGAAAGAA+TGG | - | chr1_2:31133764-31133783 | Msa0066910:CDS | 45.0% |
| ! | TATGATGGAGGATGAGGAAG+AGG | - | chr1_2:31134282-31134301 | Msa0066910:CDS | 45.0% |
| !! | ACCAATGGTGATGGTGATGA+CGG | - | chr1_2:31134403-31134422 | Msa0066910:intron | 45.0% |
| CCAATTCATTAGGTCGGGAA+TGG | + | chr1_2:31134708-31134727 | None:intergenic | 45.0% | |
| CCATTCCCGACCTAATGAAT+TGG | - | chr1_2:31134705-31134724 | Msa0066910:CDS | 45.0% | |
| CTTACAGTGGCAACACACAA+GGG | + | chr1_2:31134979-31134998 | None:intergenic | 45.0% | |
| ! | CTAGGGTGGGAAGATTTTTG+TGG | - | chr1_2:31135200-31135219 | Msa0066910:CDS | 45.0% |
| GAAGAAGTCTGGGTAATCCT+TGG | + | chr1_2:31133730-31133749 | None:intergenic | 45.0% | |
| ! | AGAGAAGCACGCTGAAAGAA+TGG | - | chr1_2:31133764-31133783 | Msa0066910:CDS | 45.0% |
| ! | TATGATGGAGGATGAGGAAG+AGG | - | chr1_2:31134282-31134301 | Msa0066910:CDS | 45.0% |
| !! | ACCAATGGTGATGGTGATGA+CGG | - | chr1_2:31134403-31134422 | Msa0066910:intron | 45.0% |
| CCAATTCATTAGGTCGGGAA+TGG | + | chr1_2:31134708-31134727 | None:intergenic | 45.0% | |
| CCATTCCCGACCTAATGAAT+TGG | - | chr1_2:31134705-31134724 | Msa0066910:CDS | 45.0% | |
| CTTACAGTGGCAACACACAA+GGG | + | chr1_2:31134979-31134998 | None:intergenic | 45.0% | |
| ! | CTAGGGTGGGAAGATTTTTG+TGG | - | chr1_2:31135200-31135219 | Msa0066910:CDS | 45.0% |
| !! | AAATAGAAAAAAAAAATAAT+TGG | + | chr1_2:31133822-31133841 | None:intergenic | 5.0% |
| !! | AAATAGAAAAAAAAAATAAT+TGG | + | chr1_2:31133822-31133841 | None:intergenic | 5.0% |
| TCTTTCAGCGTGCTTCTCTG+AGG | + | chr1_2:31133763-31133782 | None:intergenic | 50.0% | |
| ATCTTCCCCTGCGATCTCTT+AGG | + | chr1_2:31134060-31134079 | None:intergenic | 50.0% | |
| GAGATCGCAGGGGAAGATAT+TGG | - | chr1_2:31134062-31134081 | Msa0066910:intron | 50.0% | |
| GAAGAAGGTAAGTGACGTGG+AGG | - | chr1_2:31134249-31134268 | Msa0066910:CDS | 50.0% | |
| GATGAGGAAGAGGACGATGA+TGG | - | chr1_2:31134292-31134311 | Msa0066910:CDS | 50.0% | |
| AGAACCTGCAAGTGCAATGC+TGG | - | chr1_2:31134481-31134500 | Msa0066910:intron | 50.0% | |
| CTTACCAGCATTGCACTTGC+AGG | + | chr1_2:31134488-31134507 | None:intergenic | 50.0% | |
| CCTTACAGTGGCAACACACA+AGG | + | chr1_2:31134980-31134999 | None:intergenic | 50.0% | |
| CCTTGTGTGTTGCCACTGTA+AGG | - | chr1_2:31134977-31134996 | Msa0066910:intron | 50.0% | |
| CATGTACGTACGTGGAGAGA+CGG | - | chr1_2:31135163-31135182 | Msa0066910:intron | 50.0% | |
| TCTTTCAGCGTGCTTCTCTG+AGG | + | chr1_2:31133763-31133782 | None:intergenic | 50.0% | |
| ATCTTCCCCTGCGATCTCTT+AGG | + | chr1_2:31134060-31134079 | None:intergenic | 50.0% | |
| GAGATCGCAGGGGAAGATAT+TGG | - | chr1_2:31134062-31134081 | Msa0066910:intron | 50.0% | |
| GAAGAAGGTAAGTGACGTGG+AGG | - | chr1_2:31134249-31134268 | Msa0066910:CDS | 50.0% | |
| GATGAGGAAGAGGACGATGA+TGG | - | chr1_2:31134292-31134311 | Msa0066910:CDS | 50.0% | |
| AGAACCTGCAAGTGCAATGC+TGG | - | chr1_2:31134481-31134500 | Msa0066910:intron | 50.0% | |
| CTTACCAGCATTGCACTTGC+AGG | + | chr1_2:31134488-31134507 | None:intergenic | 50.0% | |
| CCTTACAGTGGCAACACACA+AGG | + | chr1_2:31134980-31134999 | None:intergenic | 50.0% | |
| CCTTGTGTGTTGCCACTGTA+AGG | - | chr1_2:31134977-31134996 | Msa0066910:intron | 50.0% | |
| CATGTACGTACGTGGAGAGA+CGG | - | chr1_2:31135163-31135182 | Msa0066910:intron | 50.0% | |
| GCCGTCATCACCATCACCAT+TGG | + | chr1_2:31134407-31134426 | None:intergenic | 55.0% | |
| AGAGAGGCCATGTACGTACG+TGG | - | chr1_2:31135155-31135174 | Msa0066910:intron | 55.0% | |
| CGTCTCTCCACGTACGTACA+TGG | + | chr1_2:31135165-31135184 | None:intergenic | 55.0% | |
| GCCGTCATCACCATCACCAT+TGG | + | chr1_2:31134407-31134426 | None:intergenic | 55.0% | |
| AGAGAGGCCATGTACGTACG+TGG | - | chr1_2:31135155-31135174 | Msa0066910:intron | 55.0% | |
| CGTCTCTCCACGTACGTACA+TGG | + | chr1_2:31135165-31135184 | None:intergenic | 55.0% | |
| CGTGGAGAGACGGTCGAGTA+CGG | - | chr1_2:31135173-31135192 | Msa0066910:intron | 60.0% | |
| ACGGTCGAGTACGGTGTGCT+AGG | - | chr1_2:31135182-31135201 | Msa0066910:intron | 60.0% | |
| CGGTCGAGTACGGTGTGCTA+GGG | - | chr1_2:31135183-31135202 | Msa0066910:intron | 60.0% | |
| TCGAGTACGGTGTGCTAGGG+TGG | - | chr1_2:31135186-31135205 | Msa0066910:CDS | 60.0% | |
| CGAGTACGGTGTGCTAGGGT+GGG | - | chr1_2:31135187-31135206 | Msa0066910:CDS | 60.0% | |
| CGTGGAGAGACGGTCGAGTA+CGG | - | chr1_2:31135173-31135192 | Msa0066910:intron | 60.0% | |
| ACGGTCGAGTACGGTGTGCT+AGG | - | chr1_2:31135182-31135201 | Msa0066910:intron | 60.0% | |
| CGGTCGAGTACGGTGTGCTA+GGG | - | chr1_2:31135183-31135202 | Msa0066910:intron | 60.0% | |
| TCGAGTACGGTGTGCTAGGG+TGG | - | chr1_2:31135186-31135205 | Msa0066910:CDS | 60.0% | |
| CGAGTACGGTGTGCTAGGGT+GGG | - | chr1_2:31135187-31135206 | Msa0066910:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 31133723 | 31135246 | 31133723 | ID=Msa0066910;Name=Msa0066910 |
| chr1_2 | mRNA | 31133723 | 31135246 | 31133723 | ID=Msa0066910-mRNA-1;Parent=Msa0066910;Name=Msa0066910-mRNA-1;_AED=0.16;_eAED=0.21;_QI=0|0|0|1|1|1|4|0|272 |
| chr1_2 | exon | 31135184 | 31135246 | 31135184 | ID=Msa0066910-mRNA-1:exon:10366;Parent=Msa0066910-mRNA-1 |
| chr1_2 | exon | 31134506 | 31134974 | 31134506 | ID=Msa0066910-mRNA-1:exon:10365;Parent=Msa0066910-mRNA-1 |
| chr1_2 | exon | 31134243 | 31134367 | 31134243 | ID=Msa0066910-mRNA-1:exon:10364;Parent=Msa0066910-mRNA-1 |
| chr1_2 | exon | 31133723 | 31133884 | 31133723 | ID=Msa0066910-mRNA-1:exon:10363;Parent=Msa0066910-mRNA-1 |
| chr1_2 | CDS | 31135184 | 31135246 | 31135184 | ID=Msa0066910-mRNA-1:cds;Parent=Msa0066910-mRNA-1 |
| chr1_2 | CDS | 31134506 | 31134974 | 31134506 | ID=Msa0066910-mRNA-1:cds;Parent=Msa0066910-mRNA-1 |
| chr1_2 | CDS | 31134243 | 31134367 | 31134243 | ID=Msa0066910-mRNA-1:cds;Parent=Msa0066910-mRNA-1 |
| chr1_2 | CDS | 31133723 | 31133884 | 31133723 | ID=Msa0066910-mRNA-1:cds;Parent=Msa0066910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
