Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0066940 | XP_013467138.1 | 83.025 | 324 | 34 | 2 | 2 | 324 | 21 | 324 | 3.33e-167 | 478 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0066940 | sp|Q9M8K2|REM21_ARATH | 22.884 | 319 | 212 | 5 | 4 | 322 | 40 | 324 | 1.85e-18 | 87.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0066940 | A0A072VGJ6 | 83.025 | 324 | 34 | 2 | 2 | 324 | 21 | 324 | 1.59e-167 | 478 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0066940 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0066940 | MtrunA17_Chr1g0169081 | 83.025 | 324 | 34 | 2 | 2 | 324 | 21 | 324 | 3.07e-171 | 478 |
| Msa0066940 | MtrunA17_Chr1g0169161 | 67.812 | 320 | 91 | 2 | 4 | 323 | 26 | 333 | 1.02e-139 | 399 |
| Msa0066940 | MtrunA17_Chr1g0169171 | 63.492 | 315 | 100 | 4 | 12 | 324 | 1 | 302 | 2.40e-122 | 353 |
| Msa0066940 | MtrunA17_Chr3g0125151 | 71.654 | 127 | 34 | 1 | 198 | 324 | 1 | 125 | 3.65e-64 | 199 |
| Msa0066940 | MtrunA17_Chr3g0125161 | 76.042 | 96 | 23 | 0 | 4 | 99 | 37 | 132 | 3.61e-45 | 151 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0066940 | AT3G06160.1 | 22.884 | 319 | 212 | 5 | 4 | 322 | 40 | 324 | 1.88e-19 | 87.8 |
| Msa0066940 | AT3G06160.5 | 22.884 | 319 | 212 | 5 | 4 | 322 | 25 | 309 | 1.95e-19 | 87.4 |
| Msa0066940 | AT3G06160.4 | 22.884 | 319 | 212 | 5 | 4 | 322 | 25 | 309 | 1.95e-19 | 87.4 |
| Msa0066940 | AT3G06160.3 | 22.884 | 319 | 212 | 5 | 4 | 322 | 25 | 309 | 1.95e-19 | 87.4 |
| Msa0066940 | AT3G06160.2 | 22.884 | 319 | 212 | 5 | 4 | 322 | 84 | 368 | 1.96e-19 | 88.2 |
| Msa0066940 | AT3G18960.3 | 31.544 | 149 | 96 | 3 | 2 | 147 | 7 | 152 | 9.73e-13 | 65.9 |
| Msa0066940 | AT3G18960.1 | 30.667 | 150 | 98 | 3 | 1 | 147 | 43 | 189 | 2.15e-12 | 65.9 |
| Msa0066940 | AT3G18960.2 | 30.714 | 140 | 91 | 3 | 1 | 137 | 43 | 179 | 3.02e-12 | 65.1 |
| Msa0066940 | AT5G57720.1 | 23.567 | 314 | 167 | 13 | 23 | 322 | 45 | 299 | 7.82e-12 | 65.5 |
Find 56 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATCCTTGATAACATTCTT+TGG | 0.259575 | 1_2:+31200142 | None:intergenic |
| TAGAGAGGAAAATTCTTTAG+AGG | 0.303868 | 1_2:-31201032 | Msa0066940:CDS |
| TGCTGCTGATGATGATATTA+TGG | 0.325258 | 1_2:-31200795 | Msa0066940:CDS |
| CTTACCAGCTTTGCACTTGC+AGG | 0.327904 | 1_2:+31200673 | None:intergenic |
| TGAACTTGATGCGTTCAAAA+AGG | 0.339507 | 1_2:-31201162 | Msa0066940:CDS |
| TGTTAAGGGTGCACGTTGTT+AGG | 0.340964 | 1_2:-31199746 | Msa0066940:CDS |
| AAGAATTGTACCAATTCATT+AGG | 0.342988 | 1_2:+31200435 | None:intergenic |
| CGAGAATGAAAGAATGTATA+AGG | 0.350460 | 1_2:-31200729 | Msa0066940:CDS |
| ATCAAGTTCACAAAAGCATT+AGG | 0.355825 | 1_2:+31201175 | None:intergenic |
| ATGGAACAATCGAAATGTTA+AGG | 0.368271 | 1_2:-31199761 | Msa0066940:CDS |
| CTCTTCCTCTACGATCTCTT+AGG | 0.380260 | 1_2:+31201119 | None:intergenic |
| GCAATGAAGTGTGGATTTCC+AGG | 0.391188 | 1_2:+31200477 | None:intergenic |
| ATATTGAAAATAACATATTC+AGG | 0.394199 | 1_2:-31200985 | Msa0066940:CDS |
| TTGTACCAATTCATTAGGTC+TGG | 0.410085 | 1_2:+31200440 | None:intergenic |
| ATATGTGTTGTGCTTATTTG+TGG | 0.421461 | 1_2:+31199912 | None:intergenic |
| TCAAGTTCACAAAAGCATTA+GGG | 0.428525 | 1_2:+31201176 | None:intergenic |
| TCATTCCAGACCTAATGAAT+TGG | 0.430343 | 1_2:-31200445 | Msa0066940:intron |
| CCTTACAGTGGCAACATTCA+AGG | 0.447936 | 1_2:+31200092 | None:intergenic |
| CCTTGAATGTTGCCACTGTA+AGG | 0.453166 | 1_2:-31200092 | Msa0066940:intron |
| CATGTCAAAGCTCGTCGTAT+TGG | 0.455772 | 1_2:-31201091 | Msa0066940:CDS |
| CGTGGAGGAAAATAACAATA+TGG | 0.456474 | 1_2:-31200912 | Msa0066940:CDS |
| TATTCCAAAGAATGTTATCA+AGG | 0.458986 | 1_2:-31200146 | Msa0066940:CDS |
| CAATATGGAGGATGAGGAAG+AGG | 0.469435 | 1_2:-31200897 | Msa0066940:CDS |
| TGGAACAATCGAAATGTTAA+GGG | 0.479872 | 1_2:-31199760 | Msa0066940:CDS |
| GAGATCGTAGAGGAAGAGAT+TGG | 0.486399 | 1_2:-31201114 | Msa0066940:CDS |
| TTGTGGCAAGATGTGATGAT+AGG | 0.494426 | 1_2:+31199929 | None:intergenic |
| CATCTCTCCATGTACGTACC+TGG | 0.498783 | 1_2:+31199877 | None:intergenic |
| AGAACCTGCAAGTGCAAAGC+TGG | 0.504053 | 1_2:-31200677 | Msa0066940:intron |
| AAATAACAATATGGAGGATG+AGG | 0.505646 | 1_2:-31200903 | Msa0066940:CDS |
| ATCAATGTGTGAAAAGAAGA+TGG | 0.515910 | 1_2:-31200942 | Msa0066940:CDS |
| AGAGGAAAATTCTTTAGAGG+AGG | 0.525644 | 1_2:-31201029 | Msa0066940:CDS |
| AAGGGTGCACGTTGTTAGGA+AGG | 0.527041 | 1_2:-31199742 | Msa0066940:CDS |
| GATGGTCGAGTATGTGTGCT+AGG | 0.533496 | 1_2:-31199858 | Msa0066940:CDS |
| GTCGAGTATGTGTGCTAGGG+TGG | 0.555615 | 1_2:-31199854 | Msa0066940:CDS |
| AGAGAGGCCAGGTACGTACA+TGG | 0.557141 | 1_2:-31199884 | Msa0066940:CDS |
| GAGATTGTGCTGCGTGAAGA+TGG | 0.578226 | 1_2:-31199780 | Msa0066940:CDS |
| CATCATGATACCGATGATGA+TGG | 0.600687 | 1_2:-31200761 | Msa0066940:CDS |
| CTTACAGTGGCAACATTCAA+GGG | 0.602180 | 1_2:+31200093 | None:intergenic |
| GTCGTCATCACCATCATCAT+CGG | 0.606956 | 1_2:+31200751 | None:intergenic |
| GATGATGATGATGACGATGA+TGG | 0.609949 | 1_2:-31200839 | Msa0066940:CDS |
| GATGATGATGATGACGATGA+TGG | 0.609949 | 1_2:-31200863 | Msa0066940:CDS |
| CAGGTACGTACATGGAGAGA+TGG | 0.615315 | 1_2:-31199876 | Msa0066940:CDS |
| ACATATCGAAAAGAGAGGCC+AGG | 0.618790 | 1_2:-31199895 | Msa0066940:CDS |
| ATTAAAATTATACCTTACAG+TGG | 0.619320 | 1_2:+31200080 | None:intergenic |
| GCTGAAATGTATATTCAACC+TGG | 0.624773 | 1_2:-31200495 | Msa0066940:CDS |
| TGATGATGATATTATGGCAG+AGG | 0.627493 | 1_2:-31200789 | Msa0066940:CDS |
| GAAGATGGTAAGTGACGTGG+AGG | 0.627950 | 1_2:-31200927 | Msa0066940:CDS |
| GGAGGAAAATAACAATATGG+AGG | 0.639957 | 1_2:-31200909 | Msa0066940:CDS |
| GATGAGGAAGAGGATGATGA+TGG | 0.641683 | 1_2:-31200887 | Msa0066940:CDS |
| CATTCAGAGAAATGACTTAG+CGG | 0.650939 | 1_2:-31199952 | Msa0066940:CDS |
| TCGAGTATGTGTGCTAGGGT+GGG | 0.664033 | 1_2:-31199853 | Msa0066940:CDS |
| AAAGAAGATGGTAAGTGACG+TGG | 0.674909 | 1_2:-31200930 | Msa0066940:CDS |
| TGGCTGGAAGCAATTTAGAG+AGG | 0.675373 | 1_2:-31201047 | Msa0066940:CDS |
| ATGGTCGAGTATGTGTGCTA+GGG | 0.677413 | 1_2:-31199857 | Msa0066940:CDS |
| ACAACACATATCGAAAAGAG+AGG | 0.679363 | 1_2:-31199900 | Msa0066940:CDS |
| TTTATCCTAAGAGATCGTAG+AGG | 0.735718 | 1_2:-31201124 | Msa0066940:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTGAAAATAACATATTC+AGG | - | chr1_2:31199939-31199958 | Msa0066940:CDS | 15.0% |
| !! | ATATTGAAAATAACATATTC+AGG | - | chr1_2:31199939-31199958 | Msa0066940:CDS | 15.0% |
| !! | TTTCAATATGTGTAAAAACA+AGG | + | chr1_2:31199928-31199947 | None:intergenic | 20.0% |
| !!! | ATTTACCTGATGATTTATTT+TGG | - | chr1_2:31200348-31200367 | Msa0066940:intron | 20.0% |
| !!! | TCCATTAATTATTTTTGACA+TGG | - | chr1_2:31200516-31200535 | Msa0066940:CDS | 20.0% |
| !! | TCCATGTCAAAAATAATTAA+TGG | + | chr1_2:31200520-31200539 | None:intergenic | 20.0% |
| !! | ATTAAAATTATACCTTACAG+TGG | + | chr1_2:31200847-31200866 | None:intergenic | 20.0% |
| !! | TCATAAATGTGAAAAATGAA+AGG | + | chr1_2:31200875-31200894 | None:intergenic | 20.0% |
| !! | TTTCAATATGTGTAAAAACA+AGG | + | chr1_2:31199928-31199947 | None:intergenic | 20.0% |
| !!! | ATTTACCTGATGATTTATTT+TGG | - | chr1_2:31200348-31200367 | Msa0066940:intron | 20.0% |
| !!! | TCCATTAATTATTTTTGACA+TGG | - | chr1_2:31200516-31200535 | Msa0066940:CDS | 20.0% |
| !! | TCCATGTCAAAAATAATTAA+TGG | + | chr1_2:31200520-31200539 | None:intergenic | 20.0% |
| !! | ATTAAAATTATACCTTACAG+TGG | + | chr1_2:31200847-31200866 | None:intergenic | 20.0% |
| !! | TCATAAATGTGAAAAATGAA+AGG | + | chr1_2:31200875-31200894 | None:intergenic | 20.0% |
| ! | CTAAACCAAAATAAATCATC+AGG | + | chr1_2:31200356-31200375 | None:intergenic | 25.0% |
| !!! | GATGATTTATTTTGGTTTAG+CGG | - | chr1_2:31200356-31200375 | Msa0066940:intron | 25.0% |
| !! | ATATATTTTGCAATGAAGTG+TGG | + | chr1_2:31200459-31200478 | None:intergenic | 25.0% |
| ! | AAGAATTGTACCAATTCATT+AGG | + | chr1_2:31200492-31200511 | None:intergenic | 25.0% |
| ! | TAATAAAGAGAATAACTAGC+AGG | + | chr1_2:31200654-31200673 | None:intergenic | 25.0% |
| ! | AAACTAAAATTGCAACAACT+TGG | + | chr1_2:31200686-31200705 | None:intergenic | 25.0% |
| ! | TATTCCAAAGAATGTTATCA+AGG | - | chr1_2:31200778-31200797 | Msa0066940:CDS | 25.0% |
| !! | AAATCCTTGATAACATTCTT+TGG | + | chr1_2:31200785-31200804 | None:intergenic | 25.0% |
| ! | CTAAACCAAAATAAATCATC+AGG | + | chr1_2:31200356-31200375 | None:intergenic | 25.0% |
| !!! | GATGATTTATTTTGGTTTAG+CGG | - | chr1_2:31200356-31200375 | Msa0066940:intron | 25.0% |
| !! | ATATATTTTGCAATGAAGTG+TGG | + | chr1_2:31200459-31200478 | None:intergenic | 25.0% |
| ! | AAGAATTGTACCAATTCATT+AGG | + | chr1_2:31200492-31200511 | None:intergenic | 25.0% |
| ! | TAATAAAGAGAATAACTAGC+AGG | + | chr1_2:31200654-31200673 | None:intergenic | 25.0% |
| ! | AAACTAAAATTGCAACAACT+TGG | + | chr1_2:31200686-31200705 | None:intergenic | 25.0% |
| ! | TATTCCAAAGAATGTTATCA+AGG | - | chr1_2:31200778-31200797 | Msa0066940:CDS | 25.0% |
| !! | AAATCCTTGATAACATTCTT+TGG | + | chr1_2:31200785-31200804 | None:intergenic | 25.0% |
| !! | TCAAGTTCACAAAAGCATTA+GGG | + | chr1_2:31199751-31199770 | None:intergenic | 30.0% |
| !! | ATCAAGTTCACAAAAGCATT+AGG | + | chr1_2:31199752-31199771 | None:intergenic | 30.0% |
| TTCAAAAAGGAGGGTAATAA+AGG | - | chr1_2:31199775-31199794 | Msa0066940:CDS | 30.0% | |
| TAGAGAGGAAAATTCTTTAG+AGG | - | chr1_2:31199892-31199911 | Msa0066940:CDS | 30.0% | |
| ATCAATGTGTGAAAAGAAGA+TGG | - | chr1_2:31199982-31200001 | Msa0066940:intron | 30.0% | |
| AAATAACAATATGGAGGATG+AGG | - | chr1_2:31200021-31200040 | Msa0066940:intron | 30.0% | |
| CGAGAATGAAAGAATGTATA+AGG | - | chr1_2:31200195-31200214 | Msa0066940:intron | 30.0% | |
| !!! | AGTTGCATTCATCCTTTTTT+TGG | - | chr1_2:31200938-31200957 | Msa0066940:CDS | 30.0% |
| !!! | ATCCTTTTTTTGGTTATGAC+AGG | - | chr1_2:31200948-31200967 | Msa0066940:CDS | 30.0% |
| ATATGTGTTGTGCTTATTTG+TGG | + | chr1_2:31201015-31201034 | None:intergenic | 30.0% | |
| ATGGAACAATCGAAATGTTA+AGG | - | chr1_2:31201163-31201182 | Msa0066940:CDS | 30.0% | |
| TGGAACAATCGAAATGTTAA+GGG | - | chr1_2:31201164-31201183 | Msa0066940:CDS | 30.0% | |
| !! | TCAAGTTCACAAAAGCATTA+GGG | + | chr1_2:31199751-31199770 | None:intergenic | 30.0% |
| !! | ATCAAGTTCACAAAAGCATT+AGG | + | chr1_2:31199752-31199771 | None:intergenic | 30.0% |
| TTCAAAAAGGAGGGTAATAA+AGG | - | chr1_2:31199775-31199794 | Msa0066940:CDS | 30.0% | |
| TAGAGAGGAAAATTCTTTAG+AGG | - | chr1_2:31199892-31199911 | Msa0066940:CDS | 30.0% | |
| ATCAATGTGTGAAAAGAAGA+TGG | - | chr1_2:31199982-31200001 | Msa0066940:intron | 30.0% | |
| AAATAACAATATGGAGGATG+AGG | - | chr1_2:31200021-31200040 | Msa0066940:intron | 30.0% | |
| CGAGAATGAAAGAATGTATA+AGG | - | chr1_2:31200195-31200214 | Msa0066940:intron | 30.0% | |
| !!! | AGTTGCATTCATCCTTTTTT+TGG | - | chr1_2:31200938-31200957 | Msa0066940:CDS | 30.0% |
| !!! | ATCCTTTTTTTGGTTATGAC+AGG | - | chr1_2:31200948-31200967 | Msa0066940:CDS | 30.0% |
| ATATGTGTTGTGCTTATTTG+TGG | + | chr1_2:31201015-31201034 | None:intergenic | 30.0% | |
| ATGGAACAATCGAAATGTTA+AGG | - | chr1_2:31201163-31201182 | Msa0066940:CDS | 30.0% | |
| TGGAACAATCGAAATGTTAA+GGG | - | chr1_2:31201164-31201183 | Msa0066940:CDS | 30.0% | |
| TGAACTTGATGCGTTCAAAA+AGG | - | chr1_2:31199762-31199781 | Msa0066940:CDS | 35.0% | |
| TTTATCCTAAGAGATCGTAG+AGG | - | chr1_2:31199800-31199819 | Msa0066940:CDS | 35.0% | |
| !!! | GATGAGCTTTATTTTGACGA+TGG | - | chr1_2:31199857-31199876 | Msa0066940:CDS | 35.0% |
| ! | AGAGGAAAATTCTTTAGAGG+AGG | - | chr1_2:31199895-31199914 | Msa0066940:CDS | 35.0% |
| CGTGGAGGAAAATAACAATA+TGG | - | chr1_2:31200012-31200031 | Msa0066940:intron | 35.0% | |
| GGAGGAAAATAACAATATGG+AGG | - | chr1_2:31200015-31200034 | Msa0066940:intron | 35.0% | |
| ! | TGCTGCTGATGATGATATTA+TGG | - | chr1_2:31200129-31200148 | Msa0066940:CDS | 35.0% |
| ! | TGATGATGATATTATGGCAG+AGG | - | chr1_2:31200135-31200154 | Msa0066940:CDS | 35.0% |
| !!! | TATTTTGGTTTAGCGGACAT+TGG | - | chr1_2:31200363-31200382 | Msa0066940:intron | 35.0% |
| !!! | ATTTTGGTTTAGCGGACATT+GGG | - | chr1_2:31200364-31200383 | Msa0066940:intron | 35.0% |
| GCTGAAATGTATATTCAACC+TGG | - | chr1_2:31200429-31200448 | Msa0066940:intron | 35.0% | |
| TCATTCCAGACCTAATGAAT+TGG | - | chr1_2:31200479-31200498 | Msa0066940:CDS | 35.0% | |
| TTGTACCAATTCATTAGGTC+TGG | + | chr1_2:31200487-31200506 | None:intergenic | 35.0% | |
| GATAAGAAATGACAAGTCGA+AGG | + | chr1_2:31200610-31200629 | None:intergenic | 35.0% | |
| ACTTCAAATGTGAAGAGTGA+TGG | + | chr1_2:31200757-31200776 | None:intergenic | 35.0% | |
| GTCCTGTCATAACCAAAAAA+AGG | + | chr1_2:31200953-31200972 | None:intergenic | 35.0% | |
| CATTCAGAGAAATGACTTAG+CGG | - | chr1_2:31200972-31200991 | Msa0066940:CDS | 35.0% | |
| ACAACACATATCGAAAAGAG+AGG | - | chr1_2:31201024-31201043 | Msa0066940:CDS | 35.0% | |
| TGAACTTGATGCGTTCAAAA+AGG | - | chr1_2:31199762-31199781 | Msa0066940:CDS | 35.0% | |
| TTTATCCTAAGAGATCGTAG+AGG | - | chr1_2:31199800-31199819 | Msa0066940:CDS | 35.0% | |
| !!! | GATGAGCTTTATTTTGACGA+TGG | - | chr1_2:31199857-31199876 | Msa0066940:CDS | 35.0% |
| ! | AGAGGAAAATTCTTTAGAGG+AGG | - | chr1_2:31199895-31199914 | Msa0066940:CDS | 35.0% |
| CGTGGAGGAAAATAACAATA+TGG | - | chr1_2:31200012-31200031 | Msa0066940:intron | 35.0% | |
| GGAGGAAAATAACAATATGG+AGG | - | chr1_2:31200015-31200034 | Msa0066940:intron | 35.0% | |
| ! | TGCTGCTGATGATGATATTA+TGG | - | chr1_2:31200129-31200148 | Msa0066940:CDS | 35.0% |
| ! | TGATGATGATATTATGGCAG+AGG | - | chr1_2:31200135-31200154 | Msa0066940:CDS | 35.0% |
| !!! | TATTTTGGTTTAGCGGACAT+TGG | - | chr1_2:31200363-31200382 | Msa0066940:intron | 35.0% |
| !!! | ATTTTGGTTTAGCGGACATT+GGG | - | chr1_2:31200364-31200383 | Msa0066940:intron | 35.0% |
| GCTGAAATGTATATTCAACC+TGG | - | chr1_2:31200429-31200448 | Msa0066940:intron | 35.0% | |
| TCATTCCAGACCTAATGAAT+TGG | - | chr1_2:31200479-31200498 | Msa0066940:CDS | 35.0% | |
| TTGTACCAATTCATTAGGTC+TGG | + | chr1_2:31200487-31200506 | None:intergenic | 35.0% | |
| GATAAGAAATGACAAGTCGA+AGG | + | chr1_2:31200610-31200629 | None:intergenic | 35.0% | |
| ACTTCAAATGTGAAGAGTGA+TGG | + | chr1_2:31200757-31200776 | None:intergenic | 35.0% | |
| GTCCTGTCATAACCAAAAAA+AGG | + | chr1_2:31200953-31200972 | None:intergenic | 35.0% | |
| CATTCAGAGAAATGACTTAG+CGG | - | chr1_2:31200972-31200991 | Msa0066940:CDS | 35.0% | |
| ACAACACATATCGAAAAGAG+AGG | - | chr1_2:31201024-31201043 | Msa0066940:CDS | 35.0% | |
| ACTTGATGCGTTCAAAAAGG+AGG | - | chr1_2:31199765-31199784 | Msa0066940:CDS | 40.0% | |
| CTTGATGCGTTCAAAAAGGA+GGG | - | chr1_2:31199766-31199785 | Msa0066940:CDS | 40.0% | |
| !!! | AGCTTTATTTTGACGATGGC+TGG | - | chr1_2:31199861-31199880 | Msa0066940:CDS | 40.0% |
| AAAGAAGATGGTAAGTGACG+TGG | - | chr1_2:31199994-31200013 | Msa0066940:intron | 40.0% | |
| ! | GATGATGATGATGACGATGA+TGG | - | chr1_2:31200061-31200080 | Msa0066940:intron | 40.0% |
| ! | GATGATGATGATGACGATGA+TGG | - | chr1_2:31200061-31200080 | Msa0066940:intron | 40.0% |
| CATCATGATACCGATGATGA+TGG | - | chr1_2:31200163-31200182 | Msa0066940:intron | 40.0% | |
| TAGTCCATTTGCTTAACCCT+AGG | - | chr1_2:31200560-31200579 | Msa0066940:intron | 40.0% | |
| TCTACCTAGGGTTAAGCAAA+TGG | + | chr1_2:31200567-31200586 | None:intergenic | 40.0% | |
| ATTTGCTTAACCCTAGGTAG+AGG | - | chr1_2:31200566-31200585 | Msa0066940:intron | 40.0% | |
| ! | TGACATGTTTTGTGAAGCAG+AGG | + | chr1_2:31200811-31200830 | None:intergenic | 40.0% |
| CTTACAGTGGCAACATTCAA+GGG | + | chr1_2:31200834-31200853 | None:intergenic | 40.0% | |
| TTGTGGCAAGATGTGATGAT+AGG | + | chr1_2:31200998-31201017 | None:intergenic | 40.0% | |
| ACTTGATGCGTTCAAAAAGG+AGG | - | chr1_2:31199765-31199784 | Msa0066940:CDS | 40.0% | |
| CTTGATGCGTTCAAAAAGGA+GGG | - | chr1_2:31199766-31199785 | Msa0066940:CDS | 40.0% | |
| !!! | AGCTTTATTTTGACGATGGC+TGG | - | chr1_2:31199861-31199880 | Msa0066940:CDS | 40.0% |
| AAAGAAGATGGTAAGTGACG+TGG | - | chr1_2:31199994-31200013 | Msa0066940:intron | 40.0% | |
| ! | GATGATGATGATGACGATGA+TGG | - | chr1_2:31200061-31200080 | Msa0066940:intron | 40.0% |
| ! | GATGATGATGATGACGATGA+TGG | - | chr1_2:31200061-31200080 | Msa0066940:intron | 40.0% |
| CATCATGATACCGATGATGA+TGG | - | chr1_2:31200163-31200182 | Msa0066940:intron | 40.0% | |
| TAGTCCATTTGCTTAACCCT+AGG | - | chr1_2:31200560-31200579 | Msa0066940:intron | 40.0% | |
| TCTACCTAGGGTTAAGCAAA+TGG | + | chr1_2:31200567-31200586 | None:intergenic | 40.0% | |
| ATTTGCTTAACCCTAGGTAG+AGG | - | chr1_2:31200566-31200585 | Msa0066940:intron | 40.0% | |
| ! | TGACATGTTTTGTGAAGCAG+AGG | + | chr1_2:31200811-31200830 | None:intergenic | 40.0% |
| CTTACAGTGGCAACATTCAA+GGG | + | chr1_2:31200834-31200853 | None:intergenic | 40.0% | |
| TTGTGGCAAGATGTGATGAT+AGG | + | chr1_2:31200998-31201017 | None:intergenic | 40.0% | |
| CTCTTCCTCTACGATCTCTT+AGG | + | chr1_2:31199808-31199827 | None:intergenic | 45.0% | |
| GAGATCGTAGAGGAAGAGAT+TGG | - | chr1_2:31199810-31199829 | Msa0066940:CDS | 45.0% | |
| CATGTCAAAGCTCGTCGTAT+TGG | - | chr1_2:31199833-31199852 | Msa0066940:CDS | 45.0% | |
| TGGCTGGAAGCAATTTAGAG+AGG | - | chr1_2:31199877-31199896 | Msa0066940:CDS | 45.0% | |
| CAATATGGAGGATGAGGAAG+AGG | - | chr1_2:31200027-31200046 | Msa0066940:intron | 45.0% | |
| GATGAGGAAGAGGATGATGA+TGG | - | chr1_2:31200037-31200056 | Msa0066940:intron | 45.0% | |
| GTCGTCATCACCATCATCAT+CGG | + | chr1_2:31200176-31200195 | None:intergenic | 45.0% | |
| GCAATGAAGTGTGGATTTCC+AGG | + | chr1_2:31200450-31200469 | None:intergenic | 45.0% | |
| TCGACTAACTCCTCTACCTA+GGG | + | chr1_2:31200579-31200598 | None:intergenic | 45.0% | |
| TTCGACTAACTCCTCTACCT+AGG | + | chr1_2:31200580-31200599 | None:intergenic | 45.0% | |
| CTAGCAGGCATAGAGTACAA+AGG | + | chr1_2:31200639-31200658 | None:intergenic | 45.0% | |
| CCTTACAGTGGCAACATTCA+AGG | + | chr1_2:31200835-31200854 | None:intergenic | 45.0% | |
| CCTTGAATGTTGCCACTGTA+AGG | - | chr1_2:31200832-31200851 | Msa0066940:CDS | 45.0% | |
| ACATATCGAAAAGAGAGGCC+AGG | - | chr1_2:31201029-31201048 | Msa0066940:CDS | 45.0% | |
| ATGGTCGAGTATGTGTGCTA+GGG | - | chr1_2:31201067-31201086 | Msa0066940:CDS | 45.0% | |
| ! | CTAGGGTGGGAAGATTTTTG+TGG | - | chr1_2:31201084-31201103 | Msa0066940:CDS | 45.0% |
| ! | TGTTAAGGGTGCACGTTGTT+AGG | - | chr1_2:31201178-31201197 | Msa0066940:CDS | 45.0% |
| CTCTTCCTCTACGATCTCTT+AGG | + | chr1_2:31199808-31199827 | None:intergenic | 45.0% | |
| GAGATCGTAGAGGAAGAGAT+TGG | - | chr1_2:31199810-31199829 | Msa0066940:CDS | 45.0% | |
| CATGTCAAAGCTCGTCGTAT+TGG | - | chr1_2:31199833-31199852 | Msa0066940:CDS | 45.0% | |
| TGGCTGGAAGCAATTTAGAG+AGG | - | chr1_2:31199877-31199896 | Msa0066940:CDS | 45.0% | |
| CAATATGGAGGATGAGGAAG+AGG | - | chr1_2:31200027-31200046 | Msa0066940:intron | 45.0% | |
| GATGAGGAAGAGGATGATGA+TGG | - | chr1_2:31200037-31200056 | Msa0066940:intron | 45.0% | |
| GTCGTCATCACCATCATCAT+CGG | + | chr1_2:31200176-31200195 | None:intergenic | 45.0% | |
| GCAATGAAGTGTGGATTTCC+AGG | + | chr1_2:31200450-31200469 | None:intergenic | 45.0% | |
| TCGACTAACTCCTCTACCTA+GGG | + | chr1_2:31200579-31200598 | None:intergenic | 45.0% | |
| TTCGACTAACTCCTCTACCT+AGG | + | chr1_2:31200580-31200599 | None:intergenic | 45.0% | |
| CTAGCAGGCATAGAGTACAA+AGG | + | chr1_2:31200639-31200658 | None:intergenic | 45.0% | |
| CCTTACAGTGGCAACATTCA+AGG | + | chr1_2:31200835-31200854 | None:intergenic | 45.0% | |
| CCTTGAATGTTGCCACTGTA+AGG | - | chr1_2:31200832-31200851 | Msa0066940:CDS | 45.0% | |
| ACATATCGAAAAGAGAGGCC+AGG | - | chr1_2:31201029-31201048 | Msa0066940:CDS | 45.0% | |
| ATGGTCGAGTATGTGTGCTA+GGG | - | chr1_2:31201067-31201086 | Msa0066940:CDS | 45.0% | |
| ! | CTAGGGTGGGAAGATTTTTG+TGG | - | chr1_2:31201084-31201103 | Msa0066940:CDS | 45.0% |
| ! | TGTTAAGGGTGCACGTTGTT+AGG | - | chr1_2:31201178-31201197 | Msa0066940:CDS | 45.0% |
| GAAGATGGTAAGTGACGTGG+AGG | - | chr1_2:31199997-31200016 | Msa0066940:intron | 50.0% | |
| AGAACCTGCAAGTGCAAAGC+TGG | - | chr1_2:31200247-31200266 | Msa0066940:intron | 50.0% | |
| CTTACCAGCTTTGCACTTGC+AGG | + | chr1_2:31200254-31200273 | None:intergenic | 50.0% | |
| CATCTCTCCATGTACGTACC+TGG | + | chr1_2:31201050-31201069 | None:intergenic | 50.0% | |
| CAGGTACGTACATGGAGAGA+TGG | - | chr1_2:31201048-31201067 | Msa0066940:CDS | 50.0% | |
| GATGGTCGAGTATGTGTGCT+AGG | - | chr1_2:31201066-31201085 | Msa0066940:CDS | 50.0% | |
| TCGAGTATGTGTGCTAGGGT+GGG | - | chr1_2:31201071-31201090 | Msa0066940:CDS | 50.0% | |
| GAGATTGTGCTGCGTGAAGA+TGG | - | chr1_2:31201144-31201163 | Msa0066940:CDS | 50.0% | |
| ! | AAGGGTGCACGTTGTTAGGA+AGG | - | chr1_2:31201182-31201201 | Msa0066940:CDS | 50.0% |
| GAAGATGGTAAGTGACGTGG+AGG | - | chr1_2:31199997-31200016 | Msa0066940:intron | 50.0% | |
| AGAACCTGCAAGTGCAAAGC+TGG | - | chr1_2:31200247-31200266 | Msa0066940:intron | 50.0% | |
| CTTACCAGCTTTGCACTTGC+AGG | + | chr1_2:31200254-31200273 | None:intergenic | 50.0% | |
| CATCTCTCCATGTACGTACC+TGG | + | chr1_2:31201050-31201069 | None:intergenic | 50.0% | |
| CAGGTACGTACATGGAGAGA+TGG | - | chr1_2:31201048-31201067 | Msa0066940:CDS | 50.0% | |
| GATGGTCGAGTATGTGTGCT+AGG | - | chr1_2:31201066-31201085 | Msa0066940:CDS | 50.0% | |
| TCGAGTATGTGTGCTAGGGT+GGG | - | chr1_2:31201071-31201090 | Msa0066940:CDS | 50.0% | |
| GAGATTGTGCTGCGTGAAGA+TGG | - | chr1_2:31201144-31201163 | Msa0066940:CDS | 50.0% | |
| ! | AAGGGTGCACGTTGTTAGGA+AGG | - | chr1_2:31201182-31201201 | Msa0066940:CDS | 50.0% |
| AGAGAGGCCAGGTACGTACA+TGG | - | chr1_2:31201040-31201059 | Msa0066940:CDS | 55.0% | |
| GTCGAGTATGTGTGCTAGGG+TGG | - | chr1_2:31201070-31201089 | Msa0066940:CDS | 55.0% | |
| AGAGAGGCCAGGTACGTACA+TGG | - | chr1_2:31201040-31201059 | Msa0066940:CDS | 55.0% | |
| GTCGAGTATGTGTGCTAGGG+TGG | - | chr1_2:31201070-31201089 | Msa0066940:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 31199737 | 31201209 | 31199737 | ID=Msa0066940;Name=Msa0066940 |
| chr1_2 | mRNA | 31199737 | 31201209 | 31199737 | ID=Msa0066940-mRNA-1;Parent=Msa0066940;Name=Msa0066940-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|1|1|1|4|0|324 |
| chr1_2 | exon | 31200678 | 31201209 | 31200678 | ID=Msa0066940-mRNA-1:exon:10373;Parent=Msa0066940-mRNA-1 |
| chr1_2 | exon | 31200446 | 31200570 | 31200446 | ID=Msa0066940-mRNA-1:exon:10372;Parent=Msa0066940-mRNA-1 |
| chr1_2 | exon | 31200093 | 31200170 | 31200093 | ID=Msa0066940-mRNA-1:exon:10371;Parent=Msa0066940-mRNA-1 |
| chr1_2 | exon | 31199737 | 31199976 | 31199737 | ID=Msa0066940-mRNA-1:exon:10370;Parent=Msa0066940-mRNA-1 |
| chr1_2 | CDS | 31200678 | 31201209 | 31200678 | ID=Msa0066940-mRNA-1:cds;Parent=Msa0066940-mRNA-1 |
| chr1_2 | CDS | 31200446 | 31200570 | 31200446 | ID=Msa0066940-mRNA-1:cds;Parent=Msa0066940-mRNA-1 |
| chr1_2 | CDS | 31200093 | 31200170 | 31200093 | ID=Msa0066940-mRNA-1:cds;Parent=Msa0066940-mRNA-1 |
| chr1_2 | CDS | 31199737 | 31199976 | 31199737 | ID=Msa0066940-mRNA-1:cds;Parent=Msa0066940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
