Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0066970 | KEH41184.1 | 60.112 | 356 | 120 | 4 | 9 | 363 | 1 | 335 | 3.36e-131 | 389 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0066970 | sp|Q9M8K2|REM21_ARATH | 22.319 | 345 | 225 | 5 | 17 | 361 | 23 | 324 | 9.15e-21 | 95.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0066970 | A0A072VGK8 | 60.112 | 356 | 120 | 4 | 9 | 363 | 1 | 335 | 1.60e-131 | 389 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0066970 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0066970 | MtrunA17_Chr1g0169171 | 59.752 | 323 | 108 | 4 | 42 | 363 | 1 | 302 | 2.54e-117 | 342 |
| Msa0066970 | MtrunA17_Chr1g0169081 | 90.533 | 169 | 15 | 1 | 196 | 363 | 156 | 324 | 8.64e-109 | 321 |
| Msa0066970 | MtrunA17_Chr1g0169161 | 72.674 | 172 | 45 | 1 | 191 | 362 | 164 | 333 | 1.36e-86 | 265 |
| Msa0066970 | MtrunA17_Chr3g0125151 | 69.291 | 127 | 37 | 1 | 237 | 363 | 1 | 125 | 2.58e-62 | 195 |
| Msa0066970 | MtrunA17_Chr3g0125161 | 72.800 | 125 | 34 | 0 | 5 | 129 | 8 | 132 | 3.65e-58 | 186 |
| Msa0066970 | MtrunA17_Chr1g0154191 | 25.767 | 163 | 116 | 3 | 20 | 179 | 22 | 182 | 1.07e-13 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0066970 | AT3G06160.5 | 22.319 | 345 | 225 | 5 | 17 | 361 | 8 | 309 | 6.84e-22 | 95.1 |
| Msa0066970 | AT3G06160.4 | 22.319 | 345 | 225 | 5 | 17 | 361 | 8 | 309 | 6.84e-22 | 95.1 |
| Msa0066970 | AT3G06160.3 | 22.319 | 345 | 225 | 5 | 17 | 361 | 8 | 309 | 6.84e-22 | 95.1 |
| Msa0066970 | AT3G06160.1 | 22.319 | 345 | 225 | 5 | 17 | 361 | 23 | 324 | 9.31e-22 | 95.1 |
| Msa0066970 | AT3G06160.2 | 22.319 | 345 | 225 | 5 | 17 | 361 | 67 | 368 | 2.00e-21 | 94.7 |
| Msa0066970 | AT5G57720.1 | 22.099 | 362 | 194 | 14 | 16 | 361 | 10 | 299 | 1.65e-13 | 70.9 |
| Msa0066970 | AT4G01580.1 | 31.646 | 158 | 95 | 4 | 19 | 175 | 30 | 175 | 5.15e-12 | 64.7 |
| Msa0066970 | AT3G18960.1 | 38.614 | 101 | 58 | 3 | 19 | 118 | 30 | 127 | 7.90e-12 | 64.3 |
| Msa0066970 | AT3G18960.2 | 38.614 | 101 | 58 | 3 | 19 | 118 | 30 | 127 | 8.66e-12 | 63.9 |
| Msa0066970 | AT3G53310.1 | 23.034 | 356 | 186 | 10 | 16 | 362 | 8 | 284 | 3.24e-11 | 63.9 |
Find 64 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAATGAAGTGTGGATTTC+CGG | 0.187944 | 1_2:+31248897 | None:intergenic |
| TGGCCATCTTAGTTACAATT+TGG | 0.218938 | 1_2:+31249880 | None:intergenic |
| AAATCCTTGATAACATTCTT+TGG | 0.259575 | 1_2:+31248559 | None:intergenic |
| TAGAGAGGAAAATTCTTTAG+AGG | 0.303868 | 1_2:-31249482 | Msa0066970:CDS |
| TGTTAAGGGTGCACATTGTT+AGG | 0.310846 | 1_2:-31248158 | Msa0066970:CDS |
| GCATCAATTTCGTCATCTTC+AGG | 0.325080 | 1_2:+31248937 | None:intergenic |
| TGCTGCTGATGATGATATTA+TGG | 0.325258 | 1_2:-31249257 | Msa0066970:CDS |
| CTTACCAGCTTTGCACTTGC+AGG | 0.327904 | 1_2:+31249096 | None:intergenic |
| AAGAATTGTACCAATTCATT+AGG | 0.342988 | 1_2:+31248856 | None:intergenic |
| AGATCATGATGATGATATTA+TGG | 0.349539 | 1_2:-31249224 | Msa0066970:CDS |
| CGAGAATGAAAGAATGTATA+AGG | 0.350460 | 1_2:-31249152 | Msa0066970:CDS |
| ATCAAGTTCACAAAAGCATT+AGG | 0.355825 | 1_2:+31249625 | None:intergenic |
| CTCTTCCTCTGCGATCTCTT+AGG | 0.370075 | 1_2:+31249569 | None:intergenic |
| TTGTACCAATTCATTAGGTC+TGG | 0.410085 | 1_2:+31248861 | None:intergenic |
| GCAAGTACGTACCATTCTTT+CGG | 0.413520 | 1_2:+31249812 | None:intergenic |
| GCAATGAAGTGTGGATTTCC+GGG | 0.417877 | 1_2:+31248898 | None:intergenic |
| ATATTGAAAACAACATATTC+AGG | 0.423216 | 1_2:-31249435 | Msa0066970:CDS |
| ATATGTGTTCTGCTTATTTG+TGG | 0.425629 | 1_2:+31248324 | None:intergenic |
| TCAAGTTCACAAAAGCATTA+GGG | 0.428525 | 1_2:+31249626 | None:intergenic |
| TCATTCCAGACCTAATGAAT+TGG | 0.430343 | 1_2:-31248866 | Msa0066970:intron |
| CCTTGCAGTGGCAACATTCA+AGG | 0.435374 | 1_2:+31248509 | None:intergenic |
| GTGAACTTGATGCGTTCAAA+AGG | 0.437817 | 1_2:-31249613 | Msa0066970:CDS |
| TTCAAAAGGGAGGATAATAA+AGG | 0.438286 | 1_2:-31249599 | Msa0066970:CDS |
| CATGGAGGAAAATAACAATA+TGG | 0.446533 | 1_2:-31249362 | Msa0066970:CDS |
| CATCTCTCCACGTACGTACT+TGG | 0.449196 | 1_2:+31248289 | None:intergenic |
| CATGTCAAAGCTCGTCGTAT+TGG | 0.455772 | 1_2:-31249541 | Msa0066970:CDS |
| TATTCCAAAGAATGTTATCA+AGG | 0.458986 | 1_2:-31248563 | Msa0066970:CDS |
| CAATATGGAGAATGAGGAAG+AGG | 0.480705 | 1_2:-31249347 | Msa0066970:CDS |
| GATGGTCGAGTACGTGTGCT+AGG | 0.481978 | 1_2:-31248270 | Msa0066970:CDS |
| TTGTGGCAAGATGTGATGAT+AGG | 0.486090 | 1_2:+31248341 | None:intergenic |
| GAAGAAATCTGGGTAATCCT+TGG | 0.489215 | 1_2:+31249860 | None:intergenic |
| GAGATCGCAGAGGAAGAGAT+TGG | 0.494636 | 1_2:-31249564 | Msa0066970:CDS |
| TATCCAAATTGTAACTAAGA+TGG | 0.495257 | 1_2:-31249883 | Msa0066970:CDS |
| GTCGAGTACGTGTGCTAGGG+TGG | 0.503803 | 1_2:-31248266 | Msa0066970:CDS |
| AGAACCTGCAAGTGCAAAGC+TGG | 0.504053 | 1_2:-31249100 | Msa0066970:intron |
| ATGGAGAATGAGGAAGAGGA+TGG | 0.520340 | 1_2:-31249343 | Msa0066970:CDS |
| ATCAATGTGTGAAAAGAAGA+AGG | 0.520397 | 1_2:-31249392 | Msa0066970:CDS |
| AAATAACAATATGGAGAATG+AGG | 0.524771 | 1_2:-31249353 | Msa0066970:CDS |
| AGAGGAAAATTCTTTAGAGG+AGG | 0.525644 | 1_2:-31249479 | Msa0066970:CDS |
| AGAGAAGCACACCGAAAGAA+TGG | 0.525778 | 1_2:-31249823 | Msa0066970:intron |
| TGAACTTGATGCGTTCAAAA+GGG | 0.531575 | 1_2:-31249612 | Msa0066970:CDS |
| AAGGGTGCACATTGTTAGGA+AGG | 0.552584 | 1_2:-31248154 | Msa0066970:CDS |
| TGATGATGATATTATGGCAG+AGG | 0.566025 | 1_2:-31249218 | Msa0066970:CDS |
| CTTGCAGTGGCAACATTCAA+GGG | 0.578433 | 1_2:+31248510 | None:intergenic |
| CAAGTACGTACGTGGAGAGA+TGG | 0.582116 | 1_2:-31248288 | Msa0066970:CDS |
| CCTTGAATGTTGCCACTGCA+AGG | 0.583961 | 1_2:-31248509 | Msa0066970:intron |
| TCTTTCGGTGTGCTTCTCTG+TGG | 0.592030 | 1_2:+31249827 | None:intergenic |
| AAAGAAGAAGGTAAGTGACA+TGG | 0.601455 | 1_2:-31249380 | Msa0066970:CDS |
| AATTGTAACTAAGATGGCCA+AGG | 0.605912 | 1_2:-31249877 | Msa0066970:CDS |
| GAAGAAGGTAAGTGACATGG+AGG | 0.606864 | 1_2:-31249377 | Msa0066970:CDS |
| CATGATACCGATGATGATGA+TGG | 0.612164 | 1_2:-31249187 | Msa0066970:CDS |
| ATGGTCGAGTACGTGTGCTA+GGG | 0.616130 | 1_2:-31248269 | Msa0066970:CDS |
| TCGAGTACGTGTGCTAGGGT+GGG | 0.622095 | 1_2:-31248265 | Msa0066970:CDS |
| GTCATCACCATCATCATCAT+CGG | 0.626181 | 1_2:+31249180 | None:intergenic |
| TGATGATGATATTATGGCAG+AGG | 0.627493 | 1_2:-31249251 | Msa0066970:CDS |
| AATTATACTATACCTTGCAG+TGG | 0.634623 | 1_2:+31248497 | None:intergenic |
| AGAGAGGCCAAGTACGTACG+TGG | 0.642453 | 1_2:-31248296 | Msa0066970:CDS |
| AATGAGGAAGAGGATGGTGA+TGG | 0.647231 | 1_2:-31249337 | Msa0066970:CDS |
| GCTGAAATGTATATTCAACC+CGG | 0.655563 | 1_2:-31248916 | Msa0066970:CDS |
| AGAACACATATCGAAAAGAG+AGG | 0.666945 | 1_2:-31248312 | Msa0066970:CDS |
| TGGCTGGAAGCAATTTAGAG+AGG | 0.668552 | 1_2:-31249497 | Msa0066970:CDS |
| ACTTGATGCGTTCAAAAGGG+AGG | 0.693993 | 1_2:-31249609 | Msa0066970:CDS |
| TGATGATGATGACGATGACG+AGG | 0.734080 | 1_2:-31249311 | Msa0066970:CDS |
| TTTATCCTAAGAGATCGCAG+AGG | 0.766717 | 1_2:-31249574 | Msa0066970:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGTCAAAAAAAAAAAGTAA+TGG | + | chr1_2:31249221-31249240 | None:intergenic | 15.0% |
| !!! | ATTACTTTTTTTTTTTGACA+TGG | - | chr1_2:31249220-31249239 | Msa0066970:CDS | 15.0% |
| !! | ATGTCAAAAAAAAAAAGTAA+TGG | + | chr1_2:31249221-31249240 | None:intergenic | 15.0% |
| !!! | ATTACTTTTTTTTTTTGACA+TGG | - | chr1_2:31249220-31249239 | Msa0066970:CDS | 15.0% |
| !!! | AAAAAACTTTGAAGAAATCT+GGG | + | chr1_2:31248199-31248218 | None:intergenic | 20.0% |
| !! | CAAAAAGAAAGAAAATTCTT+TGG | + | chr1_2:31248281-31248300 | None:intergenic | 20.0% |
| !! | TTTCAATATGTGTAAAAACA+AGG | + | chr1_2:31248600-31248619 | None:intergenic | 20.0% |
| !! | ATATTGAAAACAACATATTC+AGG | - | chr1_2:31248611-31248630 | Msa0066970:intron | 20.0% |
| !!! | CAAAATAGTAGTTTTATCTT+CGG | + | chr1_2:31248989-31249008 | None:intergenic | 20.0% |
| !!! | ATTTACCTGATGATTTATTT+TGG | - | chr1_2:31249049-31249068 | Msa0066970:intron | 20.0% |
| !! | TCATAATAGTGAAAAATGAA+AGG | + | chr1_2:31249585-31249604 | None:intergenic | 20.0% |
| !!! | AAAAAACTTTGAAGAAATCT+GGG | + | chr1_2:31248199-31248218 | None:intergenic | 20.0% |
| !! | CAAAAAGAAAGAAAATTCTT+TGG | + | chr1_2:31248281-31248300 | None:intergenic | 20.0% |
| !! | TTTCAATATGTGTAAAAACA+AGG | + | chr1_2:31248600-31248619 | None:intergenic | 20.0% |
| !! | ATATTGAAAACAACATATTC+AGG | - | chr1_2:31248611-31248630 | Msa0066970:intron | 20.0% |
| !!! | CAAAATAGTAGTTTTATCTT+CGG | + | chr1_2:31248989-31249008 | None:intergenic | 20.0% |
| !!! | ATTTACCTGATGATTTATTT+TGG | - | chr1_2:31249049-31249068 | Msa0066970:intron | 20.0% |
| !! | TCATAATAGTGAAAAATGAA+AGG | + | chr1_2:31249585-31249604 | None:intergenic | 20.0% |
| ! | TATCCAAATTGTAACTAAGA+TGG | - | chr1_2:31248163-31248182 | Msa0066970:CDS | 25.0% |
| !! | GAAAAAACTTTGAAGAAATC+TGG | + | chr1_2:31248200-31248219 | None:intergenic | 25.0% |
| ! | AAAGAAAGAAAATTCTTTGG+AGG | + | chr1_2:31248278-31248297 | None:intergenic | 25.0% |
| !! | CTTTTTGATAAAAACCAGTT+TGG | - | chr1_2:31248294-31248313 | Msa0066970:CDS | 25.0% |
| ! | AAATAACAATATGGAGAATG+AGG | - | chr1_2:31248693-31248712 | Msa0066970:intron | 25.0% |
| !! | AGATCATGATGATGATATTA+TGG | - | chr1_2:31248822-31248841 | Msa0066970:intron | 25.0% |
| ! | CTAAACCAAAATAAATCATC+AGG | + | chr1_2:31249057-31249076 | None:intergenic | 25.0% |
| !!! | GATGATTTATTTTGGTTTAG+CGG | - | chr1_2:31249057-31249076 | Msa0066970:intron | 25.0% |
| ! | AAGAATTGTACCAATTCATT+AGG | + | chr1_2:31249193-31249212 | None:intergenic | 25.0% |
| ! | AATAAAGAGAATAACTAGAC+AGG | + | chr1_2:31249358-31249377 | None:intergenic | 25.0% |
| ! | CAAATAAAATTGCAACAACT+TGG | + | chr1_2:31249391-31249410 | None:intergenic | 25.0% |
| ! | TATTCCAAAGAATGTTATCA+AGG | - | chr1_2:31249483-31249502 | Msa0066970:CDS | 25.0% |
| !! | AAATCCTTGATAACATTCTT+TGG | + | chr1_2:31249490-31249509 | None:intergenic | 25.0% |
| ! | GAAAAATGAAAGGTAAAGAT+TGG | + | chr1_2:31249575-31249594 | None:intergenic | 25.0% |
| !! | CATTTTTCACTATTATGAAG+TGG | - | chr1_2:31249587-31249606 | Msa0066970:CDS | 25.0% |
| ! | ATCAACACATTAAACAAAAG+TGG | + | chr1_2:31249616-31249635 | None:intergenic | 25.0% |
| ! | ATGCAAAAATCGAAATGTTA+AGG | - | chr1_2:31249873-31249892 | Msa0066970:CDS | 25.0% |
| ! | TGCAAAAATCGAAATGTTAA+GGG | - | chr1_2:31249874-31249893 | Msa0066970:CDS | 25.0% |
| ! | TATCCAAATTGTAACTAAGA+TGG | - | chr1_2:31248163-31248182 | Msa0066970:CDS | 25.0% |
| !! | GAAAAAACTTTGAAGAAATC+TGG | + | chr1_2:31248200-31248219 | None:intergenic | 25.0% |
| ! | AAAGAAAGAAAATTCTTTGG+AGG | + | chr1_2:31248278-31248297 | None:intergenic | 25.0% |
| !! | CTTTTTGATAAAAACCAGTT+TGG | - | chr1_2:31248294-31248313 | Msa0066970:CDS | 25.0% |
| ! | AAATAACAATATGGAGAATG+AGG | - | chr1_2:31248693-31248712 | Msa0066970:intron | 25.0% |
| !! | AGATCATGATGATGATATTA+TGG | - | chr1_2:31248822-31248841 | Msa0066970:intron | 25.0% |
| ! | CTAAACCAAAATAAATCATC+AGG | + | chr1_2:31249057-31249076 | None:intergenic | 25.0% |
| !!! | GATGATTTATTTTGGTTTAG+CGG | - | chr1_2:31249057-31249076 | Msa0066970:intron | 25.0% |
| ! | AAGAATTGTACCAATTCATT+AGG | + | chr1_2:31249193-31249212 | None:intergenic | 25.0% |
| ! | AATAAAGAGAATAACTAGAC+AGG | + | chr1_2:31249358-31249377 | None:intergenic | 25.0% |
| ! | CAAATAAAATTGCAACAACT+TGG | + | chr1_2:31249391-31249410 | None:intergenic | 25.0% |
| ! | TATTCCAAAGAATGTTATCA+AGG | - | chr1_2:31249483-31249502 | Msa0066970:CDS | 25.0% |
| !! | AAATCCTTGATAACATTCTT+TGG | + | chr1_2:31249490-31249509 | None:intergenic | 25.0% |
| ! | GAAAAATGAAAGGTAAAGAT+TGG | + | chr1_2:31249575-31249594 | None:intergenic | 25.0% |
| !! | CATTTTTCACTATTATGAAG+TGG | - | chr1_2:31249587-31249606 | Msa0066970:CDS | 25.0% |
| ! | ATCAACACATTAAACAAAAG+TGG | + | chr1_2:31249616-31249635 | None:intergenic | 25.0% |
| ! | ATGCAAAAATCGAAATGTTA+AGG | - | chr1_2:31249873-31249892 | Msa0066970:CDS | 25.0% |
| ! | TGCAAAAATCGAAATGTTAA+GGG | - | chr1_2:31249874-31249893 | Msa0066970:CDS | 25.0% |
| TATTTCTTTGCATACCAAAC+TGG | + | chr1_2:31248311-31248330 | None:intergenic | 30.0% | |
| !! | TCAAGTTCACAAAAGCATTA+GGG | + | chr1_2:31248423-31248442 | None:intergenic | 30.0% |
| !! | ATCAAGTTCACAAAAGCATT+AGG | + | chr1_2:31248424-31248443 | None:intergenic | 30.0% |
| TTCAAAAGGGAGGATAATAA+AGG | - | chr1_2:31248447-31248466 | Msa0066970:intron | 30.0% | |
| !!! | GATGAGCTTTATTTTGACAA+TGG | - | chr1_2:31248529-31248548 | Msa0066970:CDS | 30.0% |
| TAGAGAGGAAAATTCTTTAG+AGG | - | chr1_2:31248564-31248583 | Msa0066970:CDS | 30.0% | |
| ATCAATGTGTGAAAAGAAGA+AGG | - | chr1_2:31248654-31248673 | Msa0066970:intron | 30.0% | |
| CATGGAGGAAAATAACAATA+TGG | - | chr1_2:31248684-31248703 | Msa0066970:intron | 30.0% | |
| CGAGAATGAAAGAATGTATA+AGG | - | chr1_2:31248894-31248913 | Msa0066970:CDS | 30.0% | |
| ! | ATACATTTTGCAATGAAGTG+TGG | + | chr1_2:31249160-31249179 | None:intergenic | 30.0% |
| ! | GATAAGAAATGACAAGTTGA+AGG | + | chr1_2:31249314-31249333 | None:intergenic | 30.0% |
| AATTATACTATACCTTGCAG+TGG | + | chr1_2:31249552-31249571 | None:intergenic | 30.0% | |
| !!! | TTGTTGCATTCATCCTTTTT+TGG | - | chr1_2:31249648-31249667 | Msa0066970:intron | 30.0% |
| ATATGTGTTCTGCTTATTTG+TGG | + | chr1_2:31249725-31249744 | None:intergenic | 30.0% | |
| TATTTCTTTGCATACCAAAC+TGG | + | chr1_2:31248311-31248330 | None:intergenic | 30.0% | |
| !! | TCAAGTTCACAAAAGCATTA+GGG | + | chr1_2:31248423-31248442 | None:intergenic | 30.0% |
| !! | ATCAAGTTCACAAAAGCATT+AGG | + | chr1_2:31248424-31248443 | None:intergenic | 30.0% |
| TTCAAAAGGGAGGATAATAA+AGG | - | chr1_2:31248447-31248466 | Msa0066970:intron | 30.0% | |
| !!! | GATGAGCTTTATTTTGACAA+TGG | - | chr1_2:31248529-31248548 | Msa0066970:CDS | 30.0% |
| TAGAGAGGAAAATTCTTTAG+AGG | - | chr1_2:31248564-31248583 | Msa0066970:CDS | 30.0% | |
| ATCAATGTGTGAAAAGAAGA+AGG | - | chr1_2:31248654-31248673 | Msa0066970:intron | 30.0% | |
| CATGGAGGAAAATAACAATA+TGG | - | chr1_2:31248684-31248703 | Msa0066970:intron | 30.0% | |
| CGAGAATGAAAGAATGTATA+AGG | - | chr1_2:31248894-31248913 | Msa0066970:CDS | 30.0% | |
| ! | ATACATTTTGCAATGAAGTG+TGG | + | chr1_2:31249160-31249179 | None:intergenic | 30.0% |
| ! | GATAAGAAATGACAAGTTGA+AGG | + | chr1_2:31249314-31249333 | None:intergenic | 30.0% |
| AATTATACTATACCTTGCAG+TGG | + | chr1_2:31249552-31249571 | None:intergenic | 30.0% | |
| !!! | TTGTTGCATTCATCCTTTTT+TGG | - | chr1_2:31249648-31249667 | Msa0066970:intron | 30.0% |
| ATATGTGTTCTGCTTATTTG+TGG | + | chr1_2:31249725-31249744 | None:intergenic | 30.0% | |
| TGGCCATCTTAGTTACAATT+TGG | + | chr1_2:31248169-31248188 | None:intergenic | 35.0% | |
| AATTGTAACTAAGATGGCCA+AGG | - | chr1_2:31248169-31248188 | Msa0066970:CDS | 35.0% | |
| ! | AAAATTCTTTGGAGGAAGCA+TGG | + | chr1_2:31248270-31248289 | None:intergenic | 35.0% |
| TGAACTTGATGCGTTCAAAA+GGG | - | chr1_2:31248434-31248453 | Msa0066970:intron | 35.0% | |
| !!! | AGCTTTATTTTGACAATGGC+TGG | - | chr1_2:31248533-31248552 | Msa0066970:CDS | 35.0% |
| ! | AGAGGAAAATTCTTTAGAGG+AGG | - | chr1_2:31248567-31248586 | Msa0066970:CDS | 35.0% |
| AAAGAAGAAGGTAAGTGACA+TGG | - | chr1_2:31248666-31248685 | Msa0066970:intron | 35.0% | |
| ! | TGCTGCTGATGATGATATTA+TGG | - | chr1_2:31248789-31248808 | Msa0066970:intron | 35.0% |
| ! | TGATGATGATATTATGGCAG+AGG | - | chr1_2:31248795-31248814 | Msa0066970:intron | 35.0% |
| ! | TGATGATGATATTATGGCAG+AGG | - | chr1_2:31248795-31248814 | Msa0066970:intron | 35.0% |
| !!! | TATTTTGGTTTAGCGGACAT+TGG | - | chr1_2:31249064-31249083 | Msa0066970:intron | 35.0% |
| !!! | ATTTTGGTTTAGCGGACATT+GGG | - | chr1_2:31249065-31249084 | Msa0066970:intron | 35.0% |
| GCTGAAATGTATATTCAACC+CGG | - | chr1_2:31249130-31249149 | Msa0066970:CDS | 35.0% | |
| TCATTCCAGACCTAATGAAT+TGG | - | chr1_2:31249180-31249199 | Msa0066970:CDS | 35.0% | |
| TTGTACCAATTCATTAGGTC+TGG | + | chr1_2:31249188-31249207 | None:intergenic | 35.0% | |
| ACTTCAAATGTGAAGAGTGA+TGG | + | chr1_2:31249462-31249481 | None:intergenic | 35.0% | |
| !!! | CATCCTTTTTTGGTTATGAC+AGG | - | chr1_2:31249658-31249677 | Msa0066970:intron | 35.0% |
| TGTCCTGTCATAACCAAAAA+AGG | + | chr1_2:31249664-31249683 | None:intergenic | 35.0% | |
| AGAACACATATCGAAAAGAG+AGG | - | chr1_2:31249734-31249753 | Msa0066970:intron | 35.0% | |
| TGGCCATCTTAGTTACAATT+TGG | + | chr1_2:31248169-31248188 | None:intergenic | 35.0% | |
| AATTGTAACTAAGATGGCCA+AGG | - | chr1_2:31248169-31248188 | Msa0066970:CDS | 35.0% | |
| ! | AAAATTCTTTGGAGGAAGCA+TGG | + | chr1_2:31248270-31248289 | None:intergenic | 35.0% |
| TGAACTTGATGCGTTCAAAA+GGG | - | chr1_2:31248434-31248453 | Msa0066970:intron | 35.0% | |
| !!! | AGCTTTATTTTGACAATGGC+TGG | - | chr1_2:31248533-31248552 | Msa0066970:CDS | 35.0% |
| ! | AGAGGAAAATTCTTTAGAGG+AGG | - | chr1_2:31248567-31248586 | Msa0066970:CDS | 35.0% |
| AAAGAAGAAGGTAAGTGACA+TGG | - | chr1_2:31248666-31248685 | Msa0066970:intron | 35.0% | |
| ! | TGCTGCTGATGATGATATTA+TGG | - | chr1_2:31248789-31248808 | Msa0066970:intron | 35.0% |
| ! | TGATGATGATATTATGGCAG+AGG | - | chr1_2:31248795-31248814 | Msa0066970:intron | 35.0% |
| ! | TGATGATGATATTATGGCAG+AGG | - | chr1_2:31248795-31248814 | Msa0066970:intron | 35.0% |
| !!! | TATTTTGGTTTAGCGGACAT+TGG | - | chr1_2:31249064-31249083 | Msa0066970:intron | 35.0% |
| !!! | ATTTTGGTTTAGCGGACATT+GGG | - | chr1_2:31249065-31249084 | Msa0066970:intron | 35.0% |
| GCTGAAATGTATATTCAACC+CGG | - | chr1_2:31249130-31249149 | Msa0066970:CDS | 35.0% | |
| TCATTCCAGACCTAATGAAT+TGG | - | chr1_2:31249180-31249199 | Msa0066970:CDS | 35.0% | |
| TTGTACCAATTCATTAGGTC+TGG | + | chr1_2:31249188-31249207 | None:intergenic | 35.0% | |
| ACTTCAAATGTGAAGAGTGA+TGG | + | chr1_2:31249462-31249481 | None:intergenic | 35.0% | |
| !!! | CATCCTTTTTTGGTTATGAC+AGG | - | chr1_2:31249658-31249677 | Msa0066970:intron | 35.0% |
| TGTCCTGTCATAACCAAAAA+AGG | + | chr1_2:31249664-31249683 | None:intergenic | 35.0% | |
| AGAACACATATCGAAAAGAG+AGG | - | chr1_2:31249734-31249753 | Msa0066970:intron | 35.0% | |
| GAAGAAATCTGGGTAATCCT+TGG | + | chr1_2:31248189-31248208 | None:intergenic | 40.0% | |
| GCAAGTACGTACCATTCTTT+CGG | + | chr1_2:31248237-31248256 | None:intergenic | 40.0% | |
| GTGAACTTGATGCGTTCAAA+AGG | - | chr1_2:31248433-31248452 | Msa0066970:intron | 40.0% | |
| TTTATCCTAAGAGATCGCAG+AGG | - | chr1_2:31248472-31248491 | Msa0066970:intron | 40.0% | |
| CAATATGGAGAATGAGGAAG+AGG | - | chr1_2:31248699-31248718 | Msa0066970:intron | 40.0% | |
| ! | CATGATACCGATGATGATGA+TGG | - | chr1_2:31248859-31248878 | Msa0066970:intron | 40.0% |
| GTCATCACCATCATCATCAT+CGG | + | chr1_2:31248869-31248888 | None:intergenic | 40.0% | |
| GCATCAATTTCGTCATCTTC+AGG | + | chr1_2:31249112-31249131 | None:intergenic | 40.0% | |
| TGCAATGAAGTGTGGATTTC+CGG | + | chr1_2:31249152-31249171 | None:intergenic | 40.0% | |
| TAGTCCATTTGCTTAACCCT+AGG | - | chr1_2:31249264-31249283 | Msa0066970:CDS | 40.0% | |
| TCTACCTAGGGTTAAGCAAA+TGG | + | chr1_2:31249271-31249290 | None:intergenic | 40.0% | |
| ATTTGCTTAACCCTAGGTAG+AGG | - | chr1_2:31249270-31249289 | Msa0066970:CDS | 40.0% | |
| TAGACAGGCATAGAGTACAA+AGG | + | chr1_2:31249343-31249362 | None:intergenic | 40.0% | |
| ! | TGACATGTTTTGTGAAGCAG+AGG | + | chr1_2:31249516-31249535 | None:intergenic | 40.0% |
| TTGTGGCAAGATGTGATGAT+AGG | + | chr1_2:31249708-31249727 | None:intergenic | 40.0% | |
| ! | TGTTAAGGGTGCACATTGTT+AGG | - | chr1_2:31249888-31249907 | Msa0066970:CDS | 40.0% |
| GAAGAAATCTGGGTAATCCT+TGG | + | chr1_2:31248189-31248208 | None:intergenic | 40.0% | |
| GCAAGTACGTACCATTCTTT+CGG | + | chr1_2:31248237-31248256 | None:intergenic | 40.0% | |
| GTGAACTTGATGCGTTCAAA+AGG | - | chr1_2:31248433-31248452 | Msa0066970:intron | 40.0% | |
| TTTATCCTAAGAGATCGCAG+AGG | - | chr1_2:31248472-31248491 | Msa0066970:intron | 40.0% | |
| CAATATGGAGAATGAGGAAG+AGG | - | chr1_2:31248699-31248718 | Msa0066970:intron | 40.0% | |
| ! | CATGATACCGATGATGATGA+TGG | - | chr1_2:31248859-31248878 | Msa0066970:intron | 40.0% |
| GTCATCACCATCATCATCAT+CGG | + | chr1_2:31248869-31248888 | None:intergenic | 40.0% | |
| GCATCAATTTCGTCATCTTC+AGG | + | chr1_2:31249112-31249131 | None:intergenic | 40.0% | |
| TGCAATGAAGTGTGGATTTC+CGG | + | chr1_2:31249152-31249171 | None:intergenic | 40.0% | |
| TAGTCCATTTGCTTAACCCT+AGG | - | chr1_2:31249264-31249283 | Msa0066970:CDS | 40.0% | |
| TCTACCTAGGGTTAAGCAAA+TGG | + | chr1_2:31249271-31249290 | None:intergenic | 40.0% | |
| ATTTGCTTAACCCTAGGTAG+AGG | - | chr1_2:31249270-31249289 | Msa0066970:CDS | 40.0% | |
| TAGACAGGCATAGAGTACAA+AGG | + | chr1_2:31249343-31249362 | None:intergenic | 40.0% | |
| ! | TGACATGTTTTGTGAAGCAG+AGG | + | chr1_2:31249516-31249535 | None:intergenic | 40.0% |
| TTGTGGCAAGATGTGATGAT+AGG | + | chr1_2:31249708-31249727 | None:intergenic | 40.0% | |
| ! | TGTTAAGGGTGCACATTGTT+AGG | - | chr1_2:31249888-31249907 | Msa0066970:CDS | 40.0% |
| ! | AGAGAAGCACACCGAAAGAA+TGG | - | chr1_2:31248223-31248242 | Msa0066970:CDS | 45.0% |
| ACTTGATGCGTTCAAAAGGG+AGG | - | chr1_2:31248437-31248456 | Msa0066970:intron | 45.0% | |
| CATGTCAAAGCTCGTCGTAT+TGG | - | chr1_2:31248505-31248524 | Msa0066970:intron | 45.0% | |
| TGGCTGGAAGCAATTTAGAG+AGG | - | chr1_2:31248549-31248568 | Msa0066970:CDS | 45.0% | |
| GAAGAAGGTAAGTGACATGG+AGG | - | chr1_2:31248669-31248688 | Msa0066970:intron | 45.0% | |
| ATGGAGAATGAGGAAGAGGA+TGG | - | chr1_2:31248703-31248722 | Msa0066970:intron | 45.0% | |
| AATGAGGAAGAGGATGGTGA+TGG | - | chr1_2:31248709-31248728 | Msa0066970:intron | 45.0% | |
| ! | TGATGATGATGACGATGACG+AGG | - | chr1_2:31248735-31248754 | Msa0066970:intron | 45.0% |
| GCAATGAAGTGTGGATTTCC+GGG | + | chr1_2:31249151-31249170 | None:intergenic | 45.0% | |
| TCGACTAACTCCTCTACCTA+GGG | + | chr1_2:31249283-31249302 | None:intergenic | 45.0% | |
| TTCGACTAACTCCTCTACCT+AGG | + | chr1_2:31249284-31249303 | None:intergenic | 45.0% | |
| CTTGCAGTGGCAACATTCAA+GGG | + | chr1_2:31249539-31249558 | None:intergenic | 45.0% | |
| ! | AAGGGTGCACATTGTTAGGA+AGG | - | chr1_2:31249892-31249911 | Msa0066970:CDS | 45.0% |
| ! | AGAGAAGCACACCGAAAGAA+TGG | - | chr1_2:31248223-31248242 | Msa0066970:CDS | 45.0% |
| ACTTGATGCGTTCAAAAGGG+AGG | - | chr1_2:31248437-31248456 | Msa0066970:intron | 45.0% | |
| CATGTCAAAGCTCGTCGTAT+TGG | - | chr1_2:31248505-31248524 | Msa0066970:intron | 45.0% | |
| TGGCTGGAAGCAATTTAGAG+AGG | - | chr1_2:31248549-31248568 | Msa0066970:CDS | 45.0% | |
| GAAGAAGGTAAGTGACATGG+AGG | - | chr1_2:31248669-31248688 | Msa0066970:intron | 45.0% | |
| ATGGAGAATGAGGAAGAGGA+TGG | - | chr1_2:31248703-31248722 | Msa0066970:intron | 45.0% | |
| AATGAGGAAGAGGATGGTGA+TGG | - | chr1_2:31248709-31248728 | Msa0066970:intron | 45.0% | |
| ! | TGATGATGATGACGATGACG+AGG | - | chr1_2:31248735-31248754 | Msa0066970:intron | 45.0% |
| GCAATGAAGTGTGGATTTCC+GGG | + | chr1_2:31249151-31249170 | None:intergenic | 45.0% | |
| TCGACTAACTCCTCTACCTA+GGG | + | chr1_2:31249283-31249302 | None:intergenic | 45.0% | |
| TTCGACTAACTCCTCTACCT+AGG | + | chr1_2:31249284-31249303 | None:intergenic | 45.0% | |
| CTTGCAGTGGCAACATTCAA+GGG | + | chr1_2:31249539-31249558 | None:intergenic | 45.0% | |
| ! | AAGGGTGCACATTGTTAGGA+AGG | - | chr1_2:31249892-31249911 | Msa0066970:CDS | 45.0% |
| ! | TCTTTCGGTGTGCTTCTCTG+TGG | + | chr1_2:31248222-31248241 | None:intergenic | 50.0% |
| CTCTTCCTCTGCGATCTCTT+AGG | + | chr1_2:31248480-31248499 | None:intergenic | 50.0% | |
| GAGATCGCAGAGGAAGAGAT+TGG | - | chr1_2:31248482-31248501 | Msa0066970:intron | 50.0% | |
| AGAACCTGCAAGTGCAAAGC+TGG | - | chr1_2:31248946-31248965 | Msa0066970:CDS | 50.0% | |
| CTTACCAGCTTTGCACTTGC+AGG | + | chr1_2:31248953-31248972 | None:intergenic | 50.0% | |
| CCTTGCAGTGGCAACATTCA+AGG | + | chr1_2:31249540-31249559 | None:intergenic | 50.0% | |
| CCTTGAATGTTGCCACTGCA+AGG | - | chr1_2:31249537-31249556 | Msa0066970:CDS | 50.0% | |
| CATCTCTCCACGTACGTACT+TGG | + | chr1_2:31249760-31249779 | None:intergenic | 50.0% | |
| CAAGTACGTACGTGGAGAGA+TGG | - | chr1_2:31249758-31249777 | Msa0066970:intron | 50.0% | |
| ATGGTCGAGTACGTGTGCTA+GGG | - | chr1_2:31249777-31249796 | Msa0066970:intron | 50.0% | |
| ! | TCTTTCGGTGTGCTTCTCTG+TGG | + | chr1_2:31248222-31248241 | None:intergenic | 50.0% |
| CTCTTCCTCTGCGATCTCTT+AGG | + | chr1_2:31248480-31248499 | None:intergenic | 50.0% | |
| GAGATCGCAGAGGAAGAGAT+TGG | - | chr1_2:31248482-31248501 | Msa0066970:intron | 50.0% | |
| AGAACCTGCAAGTGCAAAGC+TGG | - | chr1_2:31248946-31248965 | Msa0066970:CDS | 50.0% | |
| CTTACCAGCTTTGCACTTGC+AGG | + | chr1_2:31248953-31248972 | None:intergenic | 50.0% | |
| CCTTGCAGTGGCAACATTCA+AGG | + | chr1_2:31249540-31249559 | None:intergenic | 50.0% | |
| CCTTGAATGTTGCCACTGCA+AGG | - | chr1_2:31249537-31249556 | Msa0066970:CDS | 50.0% | |
| CATCTCTCCACGTACGTACT+TGG | + | chr1_2:31249760-31249779 | None:intergenic | 50.0% | |
| CAAGTACGTACGTGGAGAGA+TGG | - | chr1_2:31249758-31249777 | Msa0066970:intron | 50.0% | |
| ATGGTCGAGTACGTGTGCTA+GGG | - | chr1_2:31249777-31249796 | Msa0066970:intron | 50.0% | |
| AGAGAGGCCAAGTACGTACG+TGG | - | chr1_2:31249750-31249769 | Msa0066970:intron | 55.0% | |
| GATGGTCGAGTACGTGTGCT+AGG | - | chr1_2:31249776-31249795 | Msa0066970:intron | 55.0% | |
| TCGAGTACGTGTGCTAGGGT+GGG | - | chr1_2:31249781-31249800 | Msa0066970:intron | 55.0% | |
| AGAGAGGCCAAGTACGTACG+TGG | - | chr1_2:31249750-31249769 | Msa0066970:intron | 55.0% | |
| GATGGTCGAGTACGTGTGCT+AGG | - | chr1_2:31249776-31249795 | Msa0066970:intron | 55.0% | |
| TCGAGTACGTGTGCTAGGGT+GGG | - | chr1_2:31249781-31249800 | Msa0066970:intron | 55.0% | |
| GTCGAGTACGTGTGCTAGGG+TGG | - | chr1_2:31249780-31249799 | Msa0066970:intron | 60.0% | |
| GTCGAGTACGTGTGCTAGGG+TGG | - | chr1_2:31249780-31249799 | Msa0066970:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 31248149 | 31249919 | 31248149 | ID=Msa0066970;Name=Msa0066970 |
| chr1_2 | mRNA | 31248149 | 31249919 | 31248149 | ID=Msa0066970-mRNA-1;Parent=Msa0066970;Name=Msa0066970-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|0|0|1|1|1|5|0|363 |
| chr1_2 | exon | 31249824 | 31249919 | 31249824 | ID=Msa0066970-mRNA-1:exon:10378;Parent=Msa0066970-mRNA-1 |
| chr1_2 | exon | 31249101 | 31249653 | 31249101 | ID=Msa0066970-mRNA-1:exon:10377;Parent=Msa0066970-mRNA-1 |
| chr1_2 | exon | 31248867 | 31248991 | 31248867 | ID=Msa0066970-mRNA-1:exon:10376;Parent=Msa0066970-mRNA-1 |
| chr1_2 | exon | 31248510 | 31248587 | 31248510 | ID=Msa0066970-mRNA-1:exon:10375;Parent=Msa0066970-mRNA-1 |
| chr1_2 | exon | 31248149 | 31248388 | 31248149 | ID=Msa0066970-mRNA-1:exon:10374;Parent=Msa0066970-mRNA-1 |
| chr1_2 | CDS | 31249824 | 31249919 | 31249824 | ID=Msa0066970-mRNA-1:cds;Parent=Msa0066970-mRNA-1 |
| chr1_2 | CDS | 31249101 | 31249653 | 31249101 | ID=Msa0066970-mRNA-1:cds;Parent=Msa0066970-mRNA-1 |
| chr1_2 | CDS | 31248867 | 31248991 | 31248867 | ID=Msa0066970-mRNA-1:cds;Parent=Msa0066970-mRNA-1 |
| chr1_2 | CDS | 31248510 | 31248587 | 31248510 | ID=Msa0066970-mRNA-1:cds;Parent=Msa0066970-mRNA-1 |
| chr1_2 | CDS | 31248149 | 31248388 | 31248149 | ID=Msa0066970-mRNA-1:cds;Parent=Msa0066970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
