Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0067070 | XP_013467291.2 | 86.885 | 244 | 32 | 0 | 17 | 260 | 1 | 244 | 2.35e-150 | 429 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0067070 | sp|Q9M1K1|ORG2_ARATH | 42.169 | 249 | 133 | 5 | 17 | 256 | 1 | 247 | 2.96e-53 | 176 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0067070 | A0A396JNS6 | 86.885 | 244 | 32 | 0 | 17 | 260 | 1 | 244 | 1.12e-150 | 429 |
Gene ID | Type | Classification |
---|---|---|
Msa0067070 | TF | bHLH |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0067070 | MtrunA17_Chr1g0170581 | 86.885 | 244 | 32 | 0 | 17 | 260 | 1 | 244 | 2.16e-154 | 429 |
Msa0067070 | MtrunA17_Chr1g0170571 | 83.534 | 249 | 33 | 1 | 17 | 265 | 1 | 241 | 1.50e-143 | 402 |
Msa0067070 | MtrunA17_Chr1g0170591 | 79.116 | 249 | 44 | 1 | 17 | 265 | 1 | 241 | 1.53e-142 | 399 |
Msa0067070 | MtrunA17_Chr7g0256671 | 57.551 | 245 | 97 | 6 | 17 | 257 | 1 | 242 | 6.85e-65 | 203 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0067070 | AT3G56970.1 | 42.169 | 249 | 133 | 5 | 17 | 256 | 1 | 247 | 3.01e-54 | 176 |
Msa0067070 | AT3G56980.1 | 39.453 | 256 | 139 | 3 | 17 | 258 | 1 | 254 | 2.23e-45 | 153 |
Msa0067070 | AT2G41240.1 | 37.247 | 247 | 141 | 5 | 17 | 258 | 1 | 238 | 7.97e-42 | 144 |
Msa0067070 | AT2G41240.2 | 36.842 | 247 | 141 | 6 | 17 | 258 | 1 | 237 | 2.36e-39 | 137 |
Msa0067070 | AT5G04150.1 | 42.623 | 183 | 97 | 4 | 76 | 253 | 78 | 257 | 4.10e-33 | 121 |
Msa0067070 | AT5G04150.2 | 43.558 | 163 | 87 | 2 | 76 | 235 | 78 | 238 | 6.19e-33 | 120 |
Find 47 sgRNAs with CRISPR-Local
Find 89 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGTGACCCTGAAGCTGTTTA+TGG | 0.179245 | 1_2:+31653857 | None:intergenic |
TGAAGCTGTTTATGGGTTAT+TGG | 0.224116 | 1_2:+31653865 | None:intergenic |
GAGCTTCTCATTTAGAATTT+CGG | 0.255939 | 1_2:+31652183 | None:intergenic |
CTTCTATAATTTGCATTTCC+AGG | 0.265122 | 1_2:-31653072 | Msa0067070:intron |
TTCTGAGATCTTGATATGTT+TGG | 0.287728 | 1_2:-31653153 | Msa0067070:CDS |
TGAGAAGCTCTTATCAATAA+TGG | 0.319674 | 1_2:-31652170 | Msa0067070:CDS |
GTTTCTTCATCTCAGACCTT+TGG | 0.353556 | 1_2:-31653104 | Msa0067070:CDS |
CAGAAGAAATTGAGCATTCC+GGG | 0.366600 | 1_2:-31653416 | Msa0067070:CDS |
GTAATTCCAGCATGTATTTG+AGG | 0.375675 | 1_2:+31653378 | None:intergenic |
GCAGAAGAAATTGAGCATTC+CGG | 0.378244 | 1_2:-31653417 | Msa0067070:intron |
AATAACCCATAAACAGCTTC+AGG | 0.395318 | 1_2:-31653863 | Msa0067070:CDS |
TCTTCATCTCAGACCTTTGG+AGG | 0.399420 | 1_2:-31653101 | Msa0067070:CDS |
AGTACCATTTGATCTGAAAC+AGG | 0.414053 | 1_2:+31653646 | None:intergenic |
GTGACCCTGAAGCTGTTTAT+GGG | 0.414301 | 1_2:+31653858 | None:intergenic |
ATGGGTTATTGGCTCTTCAA+AGG | 0.431180 | 1_2:+31653876 | None:intergenic |
GCTCTTATCAATAATGGATA+AGG | 0.434619 | 1_2:-31652164 | Msa0067070:CDS |
TCTTCCTGTTTCAGATCAAA+TGG | 0.439923 | 1_2:-31653650 | Msa0067070:intron |
TGGGTTATTGGCTCTTCAAA+GGG | 0.480765 | 1_2:+31653877 | None:intergenic |
AAGAAACATTAAGTAGCAAA+AGG | 0.489430 | 1_2:+31653120 | None:intergenic |
CATATCAAGATCTCAGAAAG+TGG | 0.493296 | 1_2:+31653158 | None:intergenic |
CGAGGGACTAATTAAGAGAA+AGG | 0.497408 | 1_2:-31653345 | Msa0067070:CDS |
CATGCCAAGGTCACTGCTTG+TGG | 0.530365 | 1_2:+31653753 | None:intergenic |
AAAAGTCCTCAAATACATGC+TGG | 0.531624 | 1_2:-31653384 | Msa0067070:CDS |
TTGATATGTTTGGAAAATGA+TGG | 0.537710 | 1_2:-31653143 | Msa0067070:CDS |
AAGAAACATAGTTACAACTC+TGG | 0.547575 | 1_2:-31653257 | Msa0067070:CDS |
CGCTAACATAATGTTGACGC+AGG | 0.553009 | 1_2:+31653933 | None:intergenic |
AGTGTAACATGAAATCTGAA+TGG | 0.555088 | 1_2:+31653193 | None:intergenic |
CATCCAATTGTTGAAAACAT+AGG | 0.558093 | 1_2:+31653901 | None:intergenic |
TTATCAATAATGGATAAGGA+AGG | 0.562276 | 1_2:-31652160 | Msa0067070:CDS |
CTTCATCTCAGACCTTTGGA+GGG | 0.563936 | 1_2:-31653100 | Msa0067070:CDS |
ATGATCACCTCATCTACTTG+TGG | 0.565875 | 1_2:+31653299 | None:intergenic |
TCTCAGAAAGTGGAATCTTG+TGG | 0.569417 | 1_2:+31653168 | None:intergenic |
ATAACCCATAAACAGCTTCA+GGG | 0.574272 | 1_2:-31653862 | Msa0067070:CDS |
CCAATTGTTGAAAACATAGG+AGG | 0.582074 | 1_2:+31653904 | None:intergenic |
ATAGAAGACTCTCCCTCCAA+AGG | 0.594272 | 1_2:+31653088 | None:intergenic |
GTCACTGCTTGTGGACTGTG+AGG | 0.594409 | 1_2:+31653762 | None:intergenic |
AGGAAGAAGTGAACGAAGTG+AGG | 0.599839 | 1_2:+31653666 | None:intergenic |
TATCAATAATGGATAAGGAA+GGG | 0.600012 | 1_2:-31652159 | Msa0067070:CDS |
CACAAGCAGTGACCTTGGCA+TGG | 0.603384 | 1_2:-31653752 | Msa0067070:CDS |
CAGTCCACAAGCAGTGACCT+TGG | 0.605273 | 1_2:-31653757 | Msa0067070:CDS |
GAATTACAGAAGCAAGTCGA+GGG | 0.635400 | 1_2:-31653362 | Msa0067070:CDS |
ACTTTCTCCACAAGTAGATG+AGG | 0.642125 | 1_2:-31653306 | Msa0067070:CDS |
GCTAACATAATGTTGACGCA+GGG | 0.644780 | 1_2:+31653934 | None:intergenic |
TCACTGCTTGTGGACTGTGA+GGG | 0.645141 | 1_2:+31653763 | None:intergenic |
CAAGCTTCTTGACCATGCCA+AGG | 0.656633 | 1_2:+31653740 | None:intergenic |
GGAATTACAGAAGCAAGTCG+AGG | 0.659886 | 1_2:-31653363 | Msa0067070:CDS |
CTAACATAATGTTGACGCAG+GGG | 0.723756 | 1_2:+31653935 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ACATAAATATATAGAAATTT+TGG | + | chr1_2:31653696-31653715 | None:intergenic | 10.0% |
!!! | ACAAATTATTGATTTTTTTG+CGG | + | chr1_2:31652413-31652432 | None:intergenic | 15.0% |
!!! | TTTAAAGTAATATCGAAAAA+GGG | + | chr1_2:31652605-31652624 | None:intergenic | 15.0% |
!!! | ATTTAAAGTAATATCGAAAA+AGG | + | chr1_2:31652606-31652625 | None:intergenic | 15.0% |
!! | TTTGTCATTGTAATATTTAT+AGG | + | chr1_2:31653484-31653503 | None:intergenic | 15.0% |
!! | GTGATTAATTATTTGTATAA+TGG | + | chr1_2:31653577-31653596 | None:intergenic | 15.0% |
!! | TTCGATATTACTTTAAATTG+TGG | - | chr1_2:31652608-31652627 | Msa0067070:intron | 20.0% |
!! | AAGACTTTACTCAATAATAT+TGG | + | chr1_2:31653100-31653119 | None:intergenic | 20.0% |
!! | AAATAATGAAACAAAGATGT+AGG | - | chr1_2:31653519-31653538 | Msa0067070:intron | 20.0% |
!!! | AATGAGTATATTTTTTGTAG+TGG | + | chr1_2:31653839-31653858 | None:intergenic | 20.0% |
! | TATAGACAATTAGAAACAGA+AGG | + | chr1_2:31652495-31652514 | None:intergenic | 25.0% |
! | TTGATATGTTTGGAAAATGA+TGG | - | chr1_2:31652959-31652978 | Msa0067070:intron | 25.0% |
! | AAGAAACATTAAGTAGCAAA+AGG | + | chr1_2:31652985-31653004 | None:intergenic | 25.0% |
!!! | AGTATATTTTTTGTAGTGGT+CGG | + | chr1_2:31653835-31653854 | None:intergenic | 25.0% |
!!! | TTATCAATAATGGATAAGGA+AGG | - | chr1_2:31653942-31653961 | Msa0067070:CDS | 25.0% |
!!! | TATCAATAATGGATAAGGAA+GGG | - | chr1_2:31653943-31653962 | Msa0067070:CDS | 25.0% |
GGAAAAAGTTATAAATGGAG+AGG | - | chr1_2:31652137-31652156 | Msa0067070:CDS | 30.0% | |
CATCCAATTGTTGAAAACAT+AGG | + | chr1_2:31652204-31652223 | None:intergenic | 30.0% | |
! | CTATGTTTTCAACAATTGGA+TGG | - | chr1_2:31652202-31652221 | Msa0067070:CDS | 30.0% |
! | TCATTTTCAGCATCAATTTG+AGG | - | chr1_2:31652296-31652315 | Msa0067070:intron | 30.0% |
ACAATTAGAAACAGAAGGAA+GGG | + | chr1_2:31652490-31652509 | None:intergenic | 30.0% | |
AAGAAACATAGTTACAACTC+TGG | - | chr1_2:31652845-31652864 | Msa0067070:intron | 30.0% | |
! | GTTTTGTACTTTCAACAAGT+AGG | - | chr1_2:31652867-31652886 | Msa0067070:intron | 30.0% |
AGTGTAACATGAAATCTGAA+TGG | + | chr1_2:31652912-31652931 | None:intergenic | 30.0% | |
!! | TTCTGAGATCTTGATATGTT+TGG | - | chr1_2:31652949-31652968 | Msa0067070:intron | 30.0% |
! | CTTCTATAATTTGCATTTCC+AGG | - | chr1_2:31653030-31653049 | Msa0067070:intron | 30.0% |
TATATTTATGTACCAGTCCA+AGG | - | chr1_2:31653705-31653724 | Msa0067070:CDS | 30.0% | |
ATATTTATGTACCAGTCCAA+GGG | - | chr1_2:31653706-31653725 | Msa0067070:CDS | 30.0% | |
GACAATGCATAATATATGCA+AGG | - | chr1_2:31653794-31653813 | Msa0067070:CDS | 30.0% | |
!!! | TATATTTTTTGTAGTGGTCG+GGG | + | chr1_2:31653833-31653852 | None:intergenic | 30.0% |
!!! | GTATATTTTTTGTAGTGGTC+GGG | + | chr1_2:31653834-31653853 | None:intergenic | 30.0% |
! | GAGCTTCTCATTTAGAATTT+CGG | + | chr1_2:31653922-31653941 | None:intergenic | 30.0% |
TGAGAAGCTCTTATCAATAA+TGG | - | chr1_2:31653932-31653951 | Msa0067070:CDS | 30.0% | |
!! | GCTCTTATCAATAATGGATA+AGG | - | chr1_2:31653938-31653957 | Msa0067070:CDS | 30.0% |
CCAATTGTTGAAAACATAGG+AGG | + | chr1_2:31652201-31652220 | None:intergenic | 35.0% | |
! | CCTCCTATGTTTTCAACAAT+TGG | - | chr1_2:31652198-31652217 | Msa0067070:CDS | 35.0% |
! | TGAAGCTGTTTATGGGTTAT+TGG | + | chr1_2:31652240-31652259 | None:intergenic | 35.0% |
AATAACCCATAAACAGCTTC+AGG | - | chr1_2:31652239-31652258 | Msa0067070:intron | 35.0% | |
ATAACCCATAAACAGCTTCA+GGG | - | chr1_2:31652240-31652259 | Msa0067070:intron | 35.0% | |
TCTTCCTGTTTCAGATCAAA+TGG | - | chr1_2:31652452-31652471 | Msa0067070:intron | 35.0% | |
! | AGTACCATTTGATCTGAAAC+AGG | + | chr1_2:31652459-31652478 | None:intergenic | 35.0% |
GACAATTAGAAACAGAAGGA+AGG | + | chr1_2:31652491-31652510 | None:intergenic | 35.0% | |
! | CTTGAAAACCTTGTGTTTTG+AGG | - | chr1_2:31652549-31652568 | Msa0067070:intron | 35.0% |
!!! | AGGACTTTTGAAATTGTTCC+CGG | + | chr1_2:31652707-31652726 | None:intergenic | 35.0% |
AAAAGTCCTCAAATACATGC+TGG | - | chr1_2:31652718-31652737 | Msa0067070:intron | 35.0% | |
GTAATTCCAGCATGTATTTG+AGG | + | chr1_2:31652727-31652746 | None:intergenic | 35.0% | |
CATATCAAGATCTCAGAAAG+TGG | + | chr1_2:31652947-31652966 | None:intergenic | 35.0% | |
TGCATAATATATGCAAGGTC+TGG | - | chr1_2:31653799-31653818 | Msa0067070:CDS | 35.0% | |
GCATAATATATGCAAGGTCT+GGG | - | chr1_2:31653800-31653819 | Msa0067070:CDS | 35.0% | |
CATAATATATGCAAGGTCTG+GGG | - | chr1_2:31653801-31653820 | Msa0067070:CDS | 35.0% | |
!! | GTTCCTTTTGTGTTTTTTGC+AGG | - | chr1_2:31653872-31653891 | Msa0067070:CDS | 35.0% |
CTACCTGCAAAAAACACAAA+AGG | + | chr1_2:31653878-31653897 | None:intergenic | 35.0% | |
CTAACATAATGTTGACGCAG+GGG | + | chr1_2:31652170-31652189 | None:intergenic | 40.0% | |
GCTAACATAATGTTGACGCA+GGG | + | chr1_2:31652171-31652190 | None:intergenic | 40.0% | |
!! | TGGGTTATTGGCTCTTCAAA+GGG | + | chr1_2:31652228-31652247 | None:intergenic | 40.0% |
!! | ATGGGTTATTGGCTCTTCAA+AGG | + | chr1_2:31652229-31652248 | None:intergenic | 40.0% |
!!! | ACCTTGTGTTTTGAGGAGTA+TGG | - | chr1_2:31652556-31652575 | Msa0067070:intron | 40.0% |
ACCATACTCCTCAAAACACA+AGG | + | chr1_2:31652560-31652579 | None:intergenic | 40.0% | |
! | GAAAAAGGGCGTACACAATT+AGG | + | chr1_2:31652591-31652610 | None:intergenic | 40.0% |
GCAGAAGAAATTGAGCATTC+CGG | - | chr1_2:31652685-31652704 | Msa0067070:intron | 40.0% | |
CAGAAGAAATTGAGCATTCC+GGG | - | chr1_2:31652686-31652705 | Msa0067070:intron | 40.0% | |
GAATTACAGAAGCAAGTCGA+GGG | - | chr1_2:31652740-31652759 | Msa0067070:intron | 40.0% | |
CGAGGGACTAATTAAGAGAA+AGG | - | chr1_2:31652757-31652776 | Msa0067070:intron | 40.0% | |
ACTTTCTCCACAAGTAGATG+AGG | - | chr1_2:31652796-31652815 | Msa0067070:intron | 40.0% | |
ATGATCACCTCATCTACTTG+TGG | + | chr1_2:31652806-31652825 | None:intergenic | 40.0% | |
TCTCAGAAAGTGGAATCTTG+TGG | + | chr1_2:31652937-31652956 | None:intergenic | 40.0% | |
GTTTCTTCATCTCAGACCTT+TGG | - | chr1_2:31652998-31653017 | Msa0067070:intron | 40.0% | |
TCCAGGTGTGTTAACTTTAC+AGG | - | chr1_2:31653047-31653066 | Msa0067070:intron | 40.0% | |
TCCTGTAAAGTTAACACACC+TGG | + | chr1_2:31653051-31653070 | None:intergenic | 40.0% | |
TGAGCTTAGCTCAGTTTGTA+TGG | - | chr1_2:31653772-31653791 | Msa0067070:CDS | 40.0% | |
CGCTAACATAATGTTGACGC+AGG | + | chr1_2:31652172-31652191 | None:intergenic | 45.0% | |
GTGACCCTGAAGCTGTTTAT+GGG | + | chr1_2:31652247-31652266 | None:intergenic | 45.0% | |
AGTGACCCTGAAGCTGTTTA+TGG | + | chr1_2:31652248-31652267 | None:intergenic | 45.0% | |
AGGAAGAAGTGAACGAAGTG+AGG | + | chr1_2:31652439-31652458 | None:intergenic | 45.0% | |
GGAATTACAGAAGCAAGTCG+AGG | - | chr1_2:31652739-31652758 | Msa0067070:intron | 45.0% | |
TCTTCATCTCAGACCTTTGG+AGG | - | chr1_2:31653001-31653020 | Msa0067070:intron | 45.0% | |
CTTCATCTCAGACCTTTGGA+GGG | - | chr1_2:31653002-31653021 | Msa0067070:intron | 45.0% | |
ATAGAAGACTCTCCCTCCAA+AGG | + | chr1_2:31653017-31653036 | None:intergenic | 45.0% | |
!! | AAAATTAAAAGAAAAAATAT+TGG | - | chr1_2:31653643-31653662 | Msa0067070:intron | 5.0% |
! | TCACTGCTTGTGGACTGTGA+GGG | + | chr1_2:31652342-31652361 | None:intergenic | 50.0% |
CAAGCTTCTTGACCATGCCA+AGG | + | chr1_2:31652365-31652384 | None:intergenic | 50.0% | |
CAAACTGAGCTAAGCTCACG+AGG | + | chr1_2:31653770-31653789 | None:intergenic | 50.0% | |
! | GTCACTGCTTGTGGACTGTG+AGG | + | chr1_2:31652343-31652362 | None:intergenic | 55.0% |
CAGTCCACAAGCAGTGACCT+TGG | - | chr1_2:31652345-31652364 | Msa0067070:intron | 55.0% | |
CATGCCAAGGTCACTGCTTG+TGG | + | chr1_2:31652352-31652371 | None:intergenic | 55.0% | |
CACAAGCAGTGACCTTGGCA+TGG | - | chr1_2:31652350-31652369 | Msa0067070:intron | 55.0% | |
ACCAGTCCAAGGGAGAGATG+CGG | - | chr1_2:31653716-31653735 | Msa0067070:CDS | 55.0% | |
AGTACTCCGCATCTCTCCCT+TGG | + | chr1_2:31653725-31653744 | None:intergenic | 55.0% | |
TCCGCATCTCTCCCTTGGAC+TGG | + | chr1_2:31653720-31653739 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_2 | gene | 31652135 | 31653989 | 31652135 | ID=Msa0067070;Name=Msa0067070 |
chr1_2 | mRNA | 31652135 | 31653989 | 31652135 | ID=Msa0067070-mRNA-1;Parent=Msa0067070;Name=Msa0067070-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0|0|0.66|1|1|3|0|265 |
chr1_2 | exon | 31653651 | 31653989 | 31653651 | ID=Msa0067070-mRNA-1:exon:10441;Parent=Msa0067070-mRNA-1 |
chr1_2 | exon | 31653073 | 31653435 | 31653073 | ID=Msa0067070-mRNA-1:exon:10440;Parent=Msa0067070-mRNA-1 |
chr1_2 | exon | 31652135 | 31652230 | 31652135 | ID=Msa0067070-mRNA-1:exon:10439;Parent=Msa0067070-mRNA-1 |
chr1_2 | CDS | 31653651 | 31653989 | 31653651 | ID=Msa0067070-mRNA-1:cds;Parent=Msa0067070-mRNA-1 |
chr1_2 | CDS | 31653073 | 31653435 | 31653073 | ID=Msa0067070-mRNA-1:cds;Parent=Msa0067070-mRNA-1 |
chr1_2 | CDS | 31652135 | 31652230 | 31652135 | ID=Msa0067070-mRNA-1:cds;Parent=Msa0067070-mRNA-1 |
Gene Sequence |
Protein sequence |