AlfalfaGEDB | Msa0067080

M. sativa cultivar zhongmu-4 / Msa0067080

KEGG: K18486
GO: GO:0000302 GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0006357 GO:0006873 GO:0006875 GO:0006879 GO:0006950 GO:0006979 GO:0007154 GO:0008150 GO:0009267 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010104 GO:0010106 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0019219 GO:0019222 GO:0019725 GO:0023051 GO:0030003 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031667 GO:0031668 GO:0031669 GO:0032991 GO:0033554 GO:0034248 GO:0034250 GO:0042221 GO:0042493 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0043565 GO:0044212 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0046685 GO:0046686 GO:0046916 GO:0048518 GO:0048522 GO:0048583 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051173 GO:0051193 GO:0051194 GO:0051252 GO:0051254 GO:0051716 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0060255 GO:0065007 GO:0065008 GO:0070297 GO:0071496 GO:0071731 GO:0080090 GO:0090575 GO:0097159 GO:0097366 GO:0098771 GO:0140110 GO:1900376 GO:1900378 GO:1900704 GO:1900706 GO:1901363 GO:1901698 GO:1901700 GO:1902531 GO:1902680 GO:1903506 GO:1903508 GO:1990641 GO:1990837 GO:2000112 GO:2001141
PFAM: PF00010.29

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0067080	sp\|Q9M1K1\|ORG2_ARATH	36.585	164	80	2	3	144	49	210	5.89e-24	97.1

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0067080	A0A072VT85	71.569	204	19	2	4	168	43	246	1.67e-88	268

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0067080	TF	bHLH

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0067080	MtrunA17_Chr1g0170581	71.220	205	19	2	4	168	43	247	4.38e-92	268
Msa0067080	MtrunA17_Chr1g0170571	67.822	202	25	2	4	165	35	236	2.94e-85	250
Msa0067080	MtrunA17_Chr1g0170591	67.327	202	26	2	4	165	35	236	2.56e-84	248
Msa0067080	MtrunA17_Chr7g0256671	48.259	201	61	6	3	162	44	242	1.24e-34	122

Showing 1 to 4 of 4 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0067080	AT3G56970.1	36.585	164	80	2	3	144	49	210	5.99e-25	97.1
Msa0067080	AT3G56980.1	34.568	162	86	3	3	144	54	215	1.05e-16	75.5
Msa0067080	AT5G04150.2	37.241	145	61	4	21	140	78	217	1.27e-15	72.0
Msa0067080	AT5G04150.1	36.429	140	62	3	21	135	78	215	1.92e-15	72.0
Msa0067080	AT2G41240.1	29.834	181	84	3	24	163	60	238	7.88e-14	67.4
Msa0067080	AT2G41240.2	30.337	178	86	4	24	163	60	237	2.56e-13	65.9

Showing 1 to 6 of 6 entries

Previous1Next

Find 22 sgRNAs with CRISPR-Local

Find 128 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACAAATTATTGATCTTCTTG+CGG	0.529574	1_2:+31672818	None:intergenic
ACTAGTTAAGAGAAAAGAAG+AGG	0.589176	1_2:-31672588	Msa0067080:CDS
ACTTTCTCCCCAAGTAGAAG+AGG	0.556979	1_2:-31672555	Msa0067080:CDS
AGAATAACCTCTTCTACTTG+GGG	0.586846	1_2:+31672548	None:intergenic
AGTACCATTTGATCTGAAAC+AGG	0.414053	1_2:+31672772	None:intergenic
CAAGCTTCTTAACCATGCCA+AGG	0.655760	1_2:+31672866	None:intergenic
CAATCCACAAGCAGTGACCT+TGG	0.569748	1_2:-31672883	Msa0067080:CDS
CACAAGCAGTGACCTTGGCA+TGG	0.602895	1_2:-31672878	Msa0067080:CDS
CACATCAAGATCTCAGAAAC+TGG	0.369301	1_2:+31672407	None:intergenic
CATGCCAAGGTCACTGCTTG+TGG	0.499479	1_2:+31672879	None:intergenic

Showing 1 to 10 of 22 entries

Previous1 2 3Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TCAACAAAGTTGTCATCAAA+TGG	+	chr1_2:31671913-31671932	None:intergenic	30.0%
AAAACAATGGAGAGAGAAAA+AGG	-	chr1_2:31671964-31671983	Msa0067080:intron	30.0%
ACTAGTTAAGAGAAAAGAAG+AGG	-	chr1_2:31672507-31672526	Msa0067080:CDS	30.0%
TAGAATAACCTCTTCTACTT+GGG	+	chr1_2:31672551-31672570	None:intergenic	30.0%
TTAGAATAACCTCTTCTACT+TGG	+	chr1_2:31672552-31672571	None:intergenic	30.0%
TTCTAAGCAAAGAATCACAA+AGG	-	chr1_2:31672566-31672585	Msa0067080:CDS	30.0%
GATGTATAGACTCATAAAAG+AGG	-	chr1_2:31673210-31673229	Msa0067080:intron	30.0%
TTATCAATAATCGAGAAGGA+AGG	-	chr1_2:31673328-31673347	Msa0067080:intron	30.0%
TCAACAAAGTTGTCATCAAA+TGG	+	chr1_2:31671913-31671932	None:intergenic	30.0%
AAAACAATGGAGAGAGAAAA+AGG	-	chr1_2:31671964-31671983	Msa0067080:intron	30.0%

Showing 1 to 10 of 128 entries

Previous1 2 3 4 5…13Next

Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	31671748	31673369	31671748	ID=Msa0067080;Name=Msa0067080
chr1_2	mRNA	31671748	31673369	31671748	ID=Msa0067080-mRNA-1;Parent=Msa0067080;Name=Msa0067080-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0\|0\|0\|0.75\|0\|0.25\|4\|0\|168
chr1_2	exon	31673364	31673369	31673364	ID=Msa0067080-mRNA-1:exon:10445;Parent=Msa0067080-mRNA-1
chr1_2	exon	31672777	31672944	31672777	ID=Msa0067080-mRNA-1:exon:10444;Parent=Msa0067080-mRNA-1
chr1_2	exon	31672376	31672618	31672376	ID=Msa0067080-mRNA-1:exon:10443;Parent=Msa0067080-mRNA-1
chr1_2	exon	31671748	31671837	31671748	ID=Msa0067080-mRNA-1:exon:10442;Parent=Msa0067080-mRNA-1
chr1_2	CDS	31673364	31673369	31673364	ID=Msa0067080-mRNA-1:cds;Parent=Msa0067080-mRNA-1
chr1_2	CDS	31672777	31672944	31672777	ID=Msa0067080-mRNA-1:cds;Parent=Msa0067080-mRNA-1
chr1_2	CDS	31672376	31672618	31672376	ID=Msa0067080-mRNA-1:cds;Parent=Msa0067080-mRNA-1
chr1_2	CDS	31671748	31671837	31671748	ID=Msa0067080-mRNA-1:cds;Parent=Msa0067080-mRNA-1

Gene Sequence

>Msa0067080

ATGATGCATCAATTTGAGGCAGAAATTAATTTAACAGATCCCTCACAATCCACAAGCAGTGACCTTGGCATGGTTAAGAAGCTTGTCCATAATGCTAGTGAACGCGATCGCCGCAAGAAGATCAATAATTTGTATTCTTCTCTTCGTTCACTTCTTCCTGTTTCAGATCAAATGGTGGAAGGACTAGTTAAGAGAAAAGAAGAGGTCTTATTGAGACTTTCTCCCCAAGTAGAAGAGGTTATTCTAAGCAAAGAATCACAAAGGAGGAAGCATAGTTACAACTCTGATTTTGTAGTTTCAACTAGTAGGCTAAATGATAGTGAAGTTACTATTCAGATATCATGTTACACTGTCAACAAGATTCCAGTTTCTGAGATCTTGATGTGTTTAGAAAATGATGGCTTTTTGCTGCTTAATGTGGATAAAGCACAGAGATTAGAATCTCATATTCTAAATGAGAAGCTCTTATCAATAATCGAGAAGGAAGGAGAGTTTTTAAAACAATAA

Protein sequence

>Msa0067080

MMHQFEAEINLTDPSQSTSSDLGMVKKLVHNASERDRRKKINNLYSSLRSLLPVSDQMVEGLVKRKEEVLLRLSPQVEEVILSKESQRRKHSYNSDFVVSTSRLNDSEVTIQISCYTVNKIPVSEILMCLENDGFLLLNVDKAQRLESHILNEKLLSIIEKEGEFLKQ*