AlfalfaGEDB | Msa0067110

M. sativa cultivar zhongmu-4 / Msa0067110

KEGG: K18486
GO: GO:0000302 GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0006357 GO:0006873 GO:0006875 GO:0006879 GO:0006950 GO:0006979 GO:0007154 GO:0008150 GO:0009267 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010104 GO:0010106 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0019219 GO:0019222 GO:0019725 GO:0023051 GO:0030003 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031667 GO:0031668 GO:0031669 GO:0032991 GO:0033554 GO:0034248 GO:0034250 GO:0042221 GO:0042493 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0043565 GO:0044212 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0046685 GO:0046686 GO:0046916 GO:0048518 GO:0048522 GO:0048583 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051173 GO:0051193 GO:0051194 GO:0051252 GO:0051254 GO:0051716 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0060255 GO:0065007 GO:0065008 GO:0070297 GO:0071496 GO:0071731 GO:0080090 GO:0090575 GO:0097159 GO:0097366 GO:0098771 GO:0140110 GO:1900376 GO:1900378 GO:1900704 GO:1900706 GO:1901363 GO:1901698 GO:1901700 GO:1902531 GO:1902680 GO:1903506 GO:1903508 GO:1990641 GO:1990837 GO:2000112 GO:2001141
PFAM: PF00010.29

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0067110	KEH41328.1	86.066	244	34	0	1	244	1	244	6.49e-150	428

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0067110	sp\|Q9M1K1\|ORG2_ARATH	39.442	251	137	6	1	240	1	247	1.81e-48	163

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0067110	A0A072VIS7	86.066	244	34	0	1	244	1	244	3.10e-150	428

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TFs/TRs:

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Gene ID	Type	Classification
Msa0067110	TF	bHLH

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0067110	MtrunA17_Chr1g0170581	85.656	244	35	0	1	244	1	244	3.81e-153	426
Msa0067110	MtrunA17_Chr1g0170591	84.836	244	29	1	1	244	1	236	3.74e-150	418
Msa0067110	MtrunA17_Chr1g0170571	83.333	246	33	1	1	246	1	238	3.71e-140	392
Msa0067110	MtrunA17_Chr7g0256671	56.972	251	89	7	1	241	1	242	8.27e-62	194
Msa0067110	MtrunA17_Chr6g0474681	32.680	153	88	5	65	212	6	148	5.04e-11	60.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0067110	AT3G56970.1	39.442	251	137	6	1	240	1	247	1.84e-49	163
Msa0067110	AT3G56980.1	38.462	273	118	6	1	242	1	254	2.05e-41	142
Msa0067110	AT2G41240.1	36.437	247	143	4	1	242	1	238	2.16e-40	139
Msa0067110	AT2G41240.2	36.032	247	143	5	1	242	1	237	7.00e-38	133
Msa0067110	AT5G04150.1	41.081	185	101	4	60	239	78	259	3.58e-32	119
Msa0067110	AT5G04150.2	42.945	163	88	2	60	219	78	238	3.61e-32	118

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Find 40 sgRNAs with CRISPR-Local

Find 118 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGAAACATAGTTACAACTC+TGG	0.547575	1_2:-31710076	Msa0067110:CDS
AAGAAATATTAAGCAGCAAA+AGG	0.464396	1_2:+31709939	None:intergenic
ACAAATTATTCATCTTCTTG+CGG	0.523820	1_2:+31710512	None:intergenic
ACCAGAAATACAGAAACATG+TGG	0.649518	1_2:-31710185	Msa0067110:CDS
AGGACTCTTGAAATTGTTGC+TGG	0.367920	1_2:+31710217	None:intergenic
AGTACCATTTGATCAGAAAT+AGG	0.267145	1_2:+31710466	None:intergenic
AGTGTAACATGAAATGTGAA+TGG	0.579724	1_2:+31710012	None:intergenic
ATATTAACTTCATTTACTTG+TGG	0.516009	1_2:+31710118	None:intergenic
ATCTCAAACCTATGGAGGGA+GGG	0.571867	1_2:-31709915	Msa0067110:CDS
ATGGATTCTGATGCTGGTTA+TGG	0.357369	1_2:+31710677	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CATCCAATTGTTGAAAACAT+AGG	+	chr1_2:31709734-31709753	None:intergenic	30.0%
TCAATAGTGTCTTTGTAGAA+TGG	+	chr1_2:31709797-31709816	None:intergenic	30.0%
AGTACCATTTGATCAGAAAT+AGG	+	chr1_2:31709989-31710008	None:intergenic	30.0%
GACAATTAGAAACAGAAAGA+AGG	+	chr1_2:31710021-31710040	None:intergenic	30.0%
TATGGTTGCAATTTCCTAAT+TGG	-	chr1_2:31710106-31710125	Msa0067110:CDS	30.0%
ATGGTTGCAATTTCCTAATT+GGG	-	chr1_2:31710107-31710126	Msa0067110:CDS	30.0%
AAGAAACATAGTTACAACTC+TGG	-	chr1_2:31710376-31710395	Msa0067110:intron	30.0%
AGTGTAACATGAAATGTGAA+TGG	+	chr1_2:31710443-31710462	None:intergenic	30.0%
CTGATGTGTTTAGAAAATGA+TGG	-	chr1_2:31710490-31710509	Msa0067110:CDS	30.0%
ATTTCTTCATCTCAAACCTA+TGG	-	chr1_2:31710529-31710548	Msa0067110:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	31709713	31710761	31709713	ID=Msa0067110;Name=Msa0067110
chr1_2	mRNA	31709713	31710761	31709713	ID=Msa0067110-mRNA-1;Parent=Msa0067110;Name=Msa0067110-mRNA-1;_AED=0.29;_eAED=0.29;_QI=0\|0\|0\|1\|1\|1\|3\|0\|247
chr1_2	exon	31710471	31710761	31710471	ID=Msa0067110-mRNA-1:exon:10450;Parent=Msa0067110-mRNA-1
chr1_2	exon	31709892	31710254	31709892	ID=Msa0067110-mRNA-1:exon:10449;Parent=Msa0067110-mRNA-1
chr1_2	exon	31709713	31709802	31709713	ID=Msa0067110-mRNA-1:exon:10448;Parent=Msa0067110-mRNA-1
chr1_2	CDS	31710471	31710761	31710471	ID=Msa0067110-mRNA-1:cds;Parent=Msa0067110-mRNA-1
chr1_2	CDS	31709892	31710254	31709892	ID=Msa0067110-mRNA-1:cds;Parent=Msa0067110-mRNA-1
chr1_2	CDS	31709713	31709802	31709713	ID=Msa0067110-mRNA-1:cds;Parent=Msa0067110-mRNA-1

Gene Sequence

>Msa0067110

ATGTTAGCGATATCTCCTCCTATGTTTTCAACAATTGGATGGCCCTTTGAAGAGCCAATAAGCCATAACCAGCATCAGAATCCATTCTACAAAGACACTATTGATCAATTATTTCATTTTGATGATCAAGTAGAGGCAGAAATTAATTCAACAGATCCCTCACAATCCACAAGCAGTGACCTTGGCATGGTCAAGAAGCTTGTTCATAATGCTAGTGAACGTCATCGCCGCAAGAAGATGAATAATTTGTATTCTTCACTCCGTTCACTTCTTCCTATTTCTGATCAAATGAAGAAATTGAGTATTCCAGCAACAATTTCAAGAGTCCTAAAATACATACCAGAAATACAGAAACATGTGGAAGGACTAATTAAGAGAAAAGAAGAGATCTTACTGAGACTTTCTCCACAAGTAAATGAAGTTAATATAAGCAAAGAATCTCAAAAGAAGAAACATAGTTACAACTCTGGTTTTGTAGTTTCAACAAGTAGGCTCAATGATAGTGAAATTACCATTCACATTTCATGTTACACTGTCCACAAGATTCCACTTTCTAAGATCCTGATGTGTTTAGAAAATGATGGCCTTTTGCTGCTTAATATTTCTTCATCTCAAACCTATGGAGGGAGGGTCTTCTGCAATTCGCATTTTCAGGTGGATAAAGCGCAAAGATTAGAATTCGATATTTTAAATGAGAAGCTGTTATCAATAATGGAAAAGGAAGGAGGGTTTTCAATACAATAA

Protein sequence

>Msa0067110

MLAISPPMFSTIGWPFEEPISHNQHQNPFYKDTIDQLFHFDDQVEAEINSTDPSQSTSSDLGMVKKLVHNASERHRRKKMNNLYSSLRSLLPISDQMKKLSIPATISRVLKYIPEIQKHVEGLIKRKEEILLRLSPQVNEVNISKESQKKKHSYNSGFVVSTSRLNDSEITIHISCYTVHKIPLSKILMCLENDGLLLLNISSSQTYGGRVFCNSHFQVDKAQRLEFDILNEKLLSIMEKEGGFSIQ*