Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0067180 | sp|Q9ZWS9|ARR3_ARATH | 59.406 | 202 | 59 | 5 | 4 | 186 | 29 | 226 | 7.36e-71 | 217 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0067180 | A0A396JVZ4 | 88.889 | 198 | 18 | 1 | 1 | 194 | 1 | 198 | 7.47e-110 | 321 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0067180 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0067180 | MtrunA17_Chr1g0170741 | 88.889 | 198 | 18 | 1 | 1 | 194 | 1 | 198 | 1.44e-113 | 321 |
| Msa0067180 | MtrunA17_Chr5g0414931 | 66.667 | 237 | 36 | 4 | 1 | 194 | 1 | 237 | 5.82e-91 | 266 |
| Msa0067180 | MtrunA17_Chr4g0059571 | 61.538 | 169 | 62 | 1 | 3 | 171 | 21 | 186 | 4.46e-64 | 197 |
| Msa0067180 | MtrunA17_Chr3g0118211 | 61.006 | 159 | 56 | 2 | 7 | 162 | 22 | 177 | 8.89e-61 | 188 |
| Msa0067180 | MtrunA17_Chr7g0256551 | 62.319 | 138 | 46 | 1 | 7 | 138 | 8 | 145 | 1.46e-55 | 176 |
| Msa0067180 | MtrunA17_Chr3g0082861 | 56.129 | 155 | 59 | 2 | 7 | 152 | 3 | 157 | 8.96e-53 | 166 |
| Msa0067180 | MtrunA17_Chr8g0352871 | 59.155 | 142 | 53 | 2 | 7 | 143 | 8 | 149 | 4.40e-51 | 162 |
| Msa0067180 | MtrunA17_Chr3g0128691 | 58.696 | 138 | 50 | 3 | 4 | 138 | 14 | 147 | 9.66e-50 | 158 |
| Msa0067180 | MtrunA17_Chr3g0124861 | 50.676 | 148 | 57 | 3 | 6 | 138 | 20 | 166 | 7.77e-43 | 143 |
| Msa0067180 | MtrunA17_Chr4g0021731 | 59.756 | 82 | 30 | 2 | 7 | 88 | 10 | 88 | 4.85e-25 | 93.2 |
| Msa0067180 | MtrunA17_Chr4g0030271 | 35.075 | 134 | 75 | 2 | 8 | 141 | 89 | 210 | 2.36e-17 | 79.3 |
| Msa0067180 | MtrunA17_Chr3g0127941 | 29.932 | 147 | 88 | 2 | 8 | 151 | 56 | 190 | 7.86e-17 | 77.8 |
| Msa0067180 | MtrunA17_Chr7g0276361 | 30.921 | 152 | 93 | 2 | 10 | 161 | 16 | 155 | 5.82e-16 | 75.5 |
| Msa0067180 | MtrunA17_Chr8g0345901 | 30.882 | 136 | 82 | 1 | 8 | 143 | 36 | 159 | 5.37e-14 | 69.7 |
| Msa0067180 | MtrunA17_Chr1g0181811 | 28.788 | 132 | 82 | 1 | 10 | 141 | 87 | 206 | 2.78e-13 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0067180 | AT1G59940.1 | 59.406 | 202 | 59 | 5 | 4 | 186 | 29 | 226 | 7.48e-72 | 217 |
| Msa0067180 | AT1G59940.2 | 59.406 | 202 | 59 | 5 | 4 | 186 | 121 | 318 | 2.45e-70 | 216 |
| Msa0067180 | AT1G10470.3 | 70.199 | 151 | 40 | 3 | 6 | 155 | 18 | 164 | 2.81e-69 | 211 |
| Msa0067180 | AT1G10470.1 | 70.199 | 151 | 40 | 3 | 6 | 155 | 32 | 178 | 7.17e-69 | 211 |
| Msa0067180 | AT3G48100.1 | 64.744 | 156 | 53 | 1 | 8 | 163 | 25 | 178 | 1.81e-64 | 197 |
| Msa0067180 | AT5G62920.1 | 72.656 | 128 | 32 | 1 | 8 | 135 | 25 | 149 | 2.37e-61 | 189 |
| Msa0067180 | AT1G74890.1 | 71.318 | 129 | 34 | 1 | 7 | 135 | 17 | 142 | 3.10e-59 | 184 |
| Msa0067180 | AT1G19050.1 | 65.441 | 136 | 44 | 1 | 7 | 142 | 23 | 155 | 1.75e-58 | 182 |
| Msa0067180 | AT2G40670.1 | 59.259 | 135 | 55 | 0 | 4 | 138 | 25 | 159 | 9.92e-55 | 171 |
| Msa0067180 | AT3G57040.2 | 58.993 | 139 | 50 | 2 | 7 | 138 | 8 | 146 | 1.57e-53 | 171 |
| Msa0067180 | AT3G57040.1 | 58.993 | 139 | 50 | 2 | 7 | 138 | 8 | 146 | 1.57e-53 | 171 |
| Msa0067180 | AT3G56380.1 | 61.194 | 134 | 48 | 2 | 6 | 138 | 18 | 148 | 2.02e-53 | 168 |
| Msa0067180 | AT2G41310.1 | 59.441 | 143 | 52 | 2 | 1 | 138 | 3 | 144 | 3.72e-53 | 169 |
| Msa0067180 | AT2G40670.2 | 58.824 | 136 | 55 | 1 | 4 | 138 | 25 | 160 | 5.85e-53 | 167 |
| Msa0067180 | AT3G56380.2 | 60.741 | 135 | 48 | 3 | 6 | 138 | 18 | 149 | 1.34e-51 | 163 |
| Msa0067180 | AT1G10470.2 | 56.044 | 91 | 30 | 6 | 70 | 155 | 17 | 102 | 1.39e-23 | 92.8 |
| Msa0067180 | AT2G46790.3 | 31.343 | 134 | 80 | 2 | 8 | 141 | 37 | 158 | 2.76e-15 | 73.6 |
| Msa0067180 | AT5G24470.1 | 30.216 | 139 | 83 | 3 | 8 | 146 | 52 | 176 | 3.21e-15 | 73.6 |
| Msa0067180 | AT2G46790.1 | 31.343 | 134 | 80 | 2 | 8 | 141 | 37 | 158 | 3.81e-15 | 73.2 |
| Msa0067180 | AT5G60100.7 | 34.848 | 132 | 74 | 2 | 10 | 141 | 66 | 185 | 1.61e-14 | 71.2 |
| Msa0067180 | AT5G60100.6 | 34.848 | 132 | 74 | 2 | 10 | 141 | 66 | 185 | 1.61e-14 | 71.2 |
| Msa0067180 | AT5G60100.4 | 34.848 | 132 | 74 | 2 | 10 | 141 | 66 | 185 | 1.61e-14 | 71.2 |
| Msa0067180 | AT5G60100.2 | 34.848 | 132 | 74 | 2 | 10 | 141 | 66 | 185 | 2.62e-14 | 70.9 |
| Msa0067180 | AT5G60100.5 | 34.848 | 132 | 74 | 2 | 10 | 141 | 66 | 185 | 3.26e-14 | 70.5 |
| Msa0067180 | AT5G60100.3 | 34.848 | 132 | 74 | 2 | 10 | 141 | 66 | 185 | 3.26e-14 | 70.5 |
| Msa0067180 | AT5G60100.1 | 34.848 | 132 | 74 | 2 | 10 | 141 | 66 | 185 | 3.26e-14 | 70.5 |
| Msa0067180 | AT2G07440.1 | 60.000 | 50 | 20 | 0 | 89 | 138 | 9 | 58 | 1.66e-13 | 65.1 |
| Msa0067180 | AT5G02810.1 | 28.358 | 134 | 84 | 1 | 8 | 141 | 78 | 199 | 1.21e-12 | 66.2 |
Find 39 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGTGATTACATGCTTCTTC+TGG | 0.290924 | 1_2:-31908087 | None:intergenic |
| ATTGAAAATATTCAGATGTT+TGG | 0.307010 | 1_2:+31907951 | Msa0067180:intron |
| AACTCATAACCAGTCATTTC+TGG | 0.328147 | 1_2:-31907154 | None:intergenic |
| TTTGTTGCCTTAGCCTTTGA+AGG | 0.366124 | 1_2:+31907102 | Msa0067180:intron |
| CTCAAAATTTCTGCTTGTAA+AGG | 0.386939 | 1_2:+31906731 | Msa0067180:CDS |
| TTCGGAAGAGGTTCATGTAT+TGG | 0.417794 | 1_2:+31906664 | Msa0067180:CDS |
| AGAAGTGATGGAGACAAATT+CGG | 0.432688 | 1_2:+31906646 | None:intergenic |
| TACTGGAATTTCCTTAAAAG+TGG | 0.438337 | 1_2:-31907311 | None:intergenic |
| TTAGTTACTGCTGTGGATAG+TGG | 0.438893 | 1_2:+31906923 | Msa0067180:intron |
| TGATGAAGGTGATGATGAAA+TGG | 0.459647 | 1_2:-31908124 | None:intergenic |
| TTCACATCACATAACTTCAC+TGG | 0.475573 | 1_2:-31908003 | None:intergenic |
| TATAACAGACCTGTCTATGC+GGG | 0.479102 | 1_2:-31907362 | None:intergenic |
| TCAGAAGACATAATCACTAC+TGG | 0.489512 | 1_2:-31907328 | None:intergenic |
| ATATTCTGCCCCGCATAGAC+AGG | 0.490699 | 1_2:+31907353 | Msa0067180:CDS |
| ATATTCAGATGTTTGGAAGA+AGG | 0.511460 | 1_2:+31907958 | Msa0067180:intron |
| TATTGCATGCCAGAAATGAC+TGG | 0.520879 | 1_2:+31907145 | Msa0067180:CDS |
| TTGATCGGAAAGTTATTGAA+AGG | 0.524082 | 1_2:+31906705 | Msa0067180:CDS |
| TGACAACCCAAATAGTCATT+CGG | 0.532453 | 1_2:-31908208 | None:intergenic |
| ATAACAAGATCCACCTTCAA+AGG | 0.539532 | 1_2:-31907115 | None:intergenic |
| GTTGCCTTAGCCTTTGAAGG+TGG | 0.539999 | 1_2:+31907105 | Msa0067180:intron |
| TACATGACAACAAGGGAGGT+TGG | 0.562595 | 1_2:+31908039 | Msa0067180:CDS |
| TGCTTGAGTCTCCAATCAGA+CGG | 0.583623 | 1_2:+31908169 | Msa0067180:CDS |
| CATCACCTTCATCATCTCCA+TGG | 0.584093 | 1_2:+31908133 | Msa0067180:CDS |
| GATGGAGACAAATTCGGAAG+AGG | 0.584900 | 1_2:+31906652 | None:intergenic |
| ACAACAAGGGAGGTTGGAGT+AGG | 0.598300 | 1_2:+31908045 | Msa0067180:CDS |
| ATGTTTGGAAGAAGGTGCAA+AGG | 0.598645 | 1_2:+31907966 | Msa0067180:CDS |
| AGAGAGAAGTCTGAATCTGA+TGG | 0.604808 | 1_2:+31906983 | Msa0067180:CDS |
| GTGAACTTTAGTTACTGCTG+TGG | 0.606977 | 1_2:+31906916 | Msa0067180:intron |
| TTGATGATAGTCTCATTGAT+CGG | 0.612021 | 1_2:+31906690 | Msa0067180:CDS |
| AGCACACTAGATGCAGACCA+TGG | 0.620424 | 1_2:-31908150 | None:intergenic |
| GCAGACCATGGAGATGATGA+AGG | 0.631715 | 1_2:-31908138 | None:intergenic |
| TGAAGGGTTACATGACAACA+AGG | 0.633631 | 1_2:+31908031 | Msa0067180:CDS |
| ATATAACAGACCTGTCTATG+CGG | 0.634079 | 1_2:-31907363 | None:intergenic |
| ATGTGATGTGAAACGACTGA+AGG | 0.663812 | 1_2:+31908014 | Msa0067180:CDS |
| TGTGATGTGAAACGACTGAA+GGG | 0.670059 | 1_2:+31908015 | Msa0067180:CDS |
| GAAGGTGATGATGAAATGGA+AGG | 0.675343 | 1_2:-31908120 | None:intergenic |
| ATAACAGACCTGTCTATGCG+GGG | 0.702996 | 1_2:-31907361 | None:intergenic |
| GGGTTACATGACAACAAGGG+AGG | 0.715675 | 1_2:+31908035 | Msa0067180:CDS |
| GAAGGGTTACATGACAACAA+GGG | 0.758159 | 1_2:+31908032 | Msa0067180:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATAGTAATGATTTTTTCAA+TGG | - | chr1_2:31907218-31907237 | None:intergenic | 15.0% |
| !! | TTTAAGGGATTATTATTATT+AGG | + | chr1_2:31907400-31907419 | Msa0067180:intron | 15.0% |
| !!! | AACAATTTTTGAAAAATAGT+TGG | - | chr1_2:31907871-31907890 | None:intergenic | 15.0% |
| !!! | TATAGTAATGATTTTTTCAA+TGG | - | chr1_2:31907218-31907237 | None:intergenic | 15.0% |
| !! | TTTAAGGGATTATTATTATT+AGG | + | chr1_2:31907400-31907419 | Msa0067180:intron | 15.0% |
| !!! | AACAATTTTTGAAAAATAGT+TGG | - | chr1_2:31907871-31907890 | None:intergenic | 15.0% |
| !!! | TACGAAATAGATGTTTTTAA+AGG | + | chr1_2:31907527-31907546 | Msa0067180:intron | 20.0% |
| !!! | ACGAAATAGATGTTTTTAAA+GGG | + | chr1_2:31907528-31907547 | Msa0067180:intron | 20.0% |
| !!! | ATTTAAGTGTCTTTTTTCTT+TGG | - | chr1_2:31907684-31907703 | None:intergenic | 20.0% |
| !! | ATTGAAAATATTCAGATGTT+TGG | + | chr1_2:31907951-31907970 | Msa0067180:intron | 20.0% |
| !!! | TACGAAATAGATGTTTTTAA+AGG | + | chr1_2:31907527-31907546 | Msa0067180:intron | 20.0% |
| !!! | ACGAAATAGATGTTTTTAAA+GGG | + | chr1_2:31907528-31907547 | Msa0067180:intron | 20.0% |
| !!! | ATTTAAGTGTCTTTTTTCTT+TGG | - | chr1_2:31907684-31907703 | None:intergenic | 20.0% |
| !! | ATTGAAAATATTCAGATGTT+TGG | + | chr1_2:31907951-31907970 | Msa0067180:intron | 20.0% |
| !!! | GTGTTGATGATTTTTGTTTT+TGG | + | chr1_2:31906894-31906913 | Msa0067180:intron | 25.0% |
| ! | TGAGTTGCTCAAAAAAATTA+AGG | + | chr1_2:31907171-31907190 | Msa0067180:CDS | 25.0% |
| !!! | CGAAATAGATGTTTTTAAAG+GGG | + | chr1_2:31907529-31907548 | Msa0067180:intron | 25.0% |
| !! | TTTTCAATTGTAACAAACCA+TGG | + | chr1_2:31907576-31907595 | Msa0067180:intron | 25.0% |
| !! | GTCATTAAAAAGTATAACCA+TGG | - | chr1_2:31907596-31907615 | None:intergenic | 25.0% |
| !!! | GTGTTGATGATTTTTGTTTT+TGG | + | chr1_2:31906894-31906913 | Msa0067180:intron | 25.0% |
| ! | TGAGTTGCTCAAAAAAATTA+AGG | + | chr1_2:31907171-31907190 | Msa0067180:CDS | 25.0% |
| !!! | CGAAATAGATGTTTTTAAAG+GGG | + | chr1_2:31907529-31907548 | Msa0067180:intron | 25.0% |
| !! | TTTTCAATTGTAACAAACCA+TGG | + | chr1_2:31907576-31907595 | Msa0067180:intron | 25.0% |
| !! | GTCATTAAAAAGTATAACCA+TGG | - | chr1_2:31907596-31907615 | None:intergenic | 25.0% |
| ! | TTGATGATAGTCTCATTGAT+CGG | + | chr1_2:31906690-31906709 | Msa0067180:CDS | 30.0% |
| TTGATCGGAAAGTTATTGAA+AGG | + | chr1_2:31906705-31906724 | Msa0067180:CDS | 30.0% | |
| CTCAAAATTTCTGCTTGTAA+AGG | + | chr1_2:31906731-31906750 | Msa0067180:CDS | 30.0% | |
| CCTGCTTCAAAATGAAATTT+CGG | - | chr1_2:31907285-31907304 | None:intergenic | 30.0% | |
| TACTGGAATTTCCTTAAAAG+TGG | - | chr1_2:31907314-31907333 | None:intergenic | 30.0% | |
| ! | TTATTGTTATTAGTTACCGC+TGG | + | chr1_2:31907889-31907908 | Msa0067180:intron | 30.0% |
| ATATTCAGATGTTTGGAAGA+AGG | + | chr1_2:31907958-31907977 | Msa0067180:intron | 30.0% | |
| ! | TTGATGATAGTCTCATTGAT+CGG | + | chr1_2:31906690-31906709 | Msa0067180:CDS | 30.0% |
| TTGATCGGAAAGTTATTGAA+AGG | + | chr1_2:31906705-31906724 | Msa0067180:CDS | 30.0% | |
| CTCAAAATTTCTGCTTGTAA+AGG | + | chr1_2:31906731-31906750 | Msa0067180:CDS | 30.0% | |
| CCTGCTTCAAAATGAAATTT+CGG | - | chr1_2:31907285-31907304 | None:intergenic | 30.0% | |
| TACTGGAATTTCCTTAAAAG+TGG | - | chr1_2:31907314-31907333 | None:intergenic | 30.0% | |
| ! | TTATTGTTATTAGTTACCGC+TGG | + | chr1_2:31907889-31907908 | Msa0067180:intron | 30.0% |
| ATATTCAGATGTTTGGAAGA+AGG | + | chr1_2:31907958-31907977 | Msa0067180:intron | 30.0% | |
| !!! | AATCAGAGCACTGCAATTTT+TGG | + | chr1_2:31906946-31906965 | Msa0067180:CDS | 35.0% |
| !!! | ATCAGAGCACTGCAATTTTT+GGG | + | chr1_2:31906947-31906966 | Msa0067180:CDS | 35.0% |
| ! | TCTGATGGTTCTATTGTATG+TGG | + | chr1_2:31906998-31907017 | Msa0067180:intron | 35.0% |
| ATAACAAGATCCACCTTCAA+AGG | - | chr1_2:31907118-31907137 | None:intergenic | 35.0% | |
| AACTCATAACCAGTCATTTC+TGG | - | chr1_2:31907157-31907176 | None:intergenic | 35.0% | |
| !!! | CCGAAATTTCATTTTGAAGC+AGG | + | chr1_2:31907282-31907301 | Msa0067180:intron | 35.0% |
| TCAGAAGACATAATCACTAC+TGG | - | chr1_2:31907331-31907350 | None:intergenic | 35.0% | |
| ATATAACAGACCTGTCTATG+CGG | - | chr1_2:31907366-31907385 | None:intergenic | 35.0% | |
| AACTTCATCTCAATTTCCAG+CGG | - | chr1_2:31907908-31907927 | None:intergenic | 35.0% | |
| TTCACATCACATAACTTCAC+TGG | - | chr1_2:31908006-31908025 | None:intergenic | 35.0% | |
| ! | TGATGAAGGTGATGATGAAA+TGG | - | chr1_2:31908127-31908146 | None:intergenic | 35.0% |
| !! | GTCATTTTAAACCGTCTGAT+TGG | - | chr1_2:31908183-31908202 | None:intergenic | 35.0% |
| !!! | AATCAGAGCACTGCAATTTT+TGG | + | chr1_2:31906946-31906965 | Msa0067180:CDS | 35.0% |
| !!! | ATCAGAGCACTGCAATTTTT+GGG | + | chr1_2:31906947-31906966 | Msa0067180:CDS | 35.0% |
| ! | TCTGATGGTTCTATTGTATG+TGG | + | chr1_2:31906998-31907017 | Msa0067180:intron | 35.0% |
| ATAACAAGATCCACCTTCAA+AGG | - | chr1_2:31907118-31907137 | None:intergenic | 35.0% | |
| AACTCATAACCAGTCATTTC+TGG | - | chr1_2:31907157-31907176 | None:intergenic | 35.0% | |
| !!! | CCGAAATTTCATTTTGAAGC+AGG | + | chr1_2:31907282-31907301 | Msa0067180:intron | 35.0% |
| TCAGAAGACATAATCACTAC+TGG | - | chr1_2:31907331-31907350 | None:intergenic | 35.0% | |
| ATATAACAGACCTGTCTATG+CGG | - | chr1_2:31907366-31907385 | None:intergenic | 35.0% | |
| AACTTCATCTCAATTTCCAG+CGG | - | chr1_2:31907908-31907927 | None:intergenic | 35.0% | |
| TTCACATCACATAACTTCAC+TGG | - | chr1_2:31908006-31908025 | None:intergenic | 35.0% | |
| ! | TGATGAAGGTGATGATGAAA+TGG | - | chr1_2:31908127-31908146 | None:intergenic | 35.0% |
| !! | GTCATTTTAAACCGTCTGAT+TGG | - | chr1_2:31908183-31908202 | None:intergenic | 35.0% |
| TTCGGAAGAGGTTCATGTAT+TGG | + | chr1_2:31906664-31906683 | Msa0067180:CDS | 40.0% | |
| GTAAAGGTGAGTTTGTGATC+TGG | + | chr1_2:31906747-31906766 | Msa0067180:intron | 40.0% | |
| GTGAACTTTAGTTACTGCTG+TGG | + | chr1_2:31906916-31906935 | Msa0067180:intron | 40.0% | |
| TTAGTTACTGCTGTGGATAG+TGG | + | chr1_2:31906923-31906942 | Msa0067180:intron | 40.0% | |
| !!! | TCAGAGCACTGCAATTTTTG+GGG | + | chr1_2:31906948-31906967 | Msa0067180:CDS | 40.0% |
| AGAGAGAAGTCTGAATCTGA+TGG | + | chr1_2:31906983-31907002 | Msa0067180:CDS | 40.0% | |
| ! | TTTGTTGCCTTAGCCTTTGA+AGG | + | chr1_2:31907102-31907121 | Msa0067180:intron | 40.0% |
| TATTGCATGCCAGAAATGAC+TGG | + | chr1_2:31907145-31907164 | Msa0067180:CDS | 40.0% | |
| TATAACAGACCTGTCTATGC+GGG | - | chr1_2:31907365-31907384 | None:intergenic | 40.0% | |
| ! | ATGTTTGGAAGAAGGTGCAA+AGG | + | chr1_2:31907966-31907985 | Msa0067180:CDS | 40.0% |
| ATGTGATGTGAAACGACTGA+AGG | + | chr1_2:31908014-31908033 | Msa0067180:CDS | 40.0% | |
| TGTGATGTGAAACGACTGAA+GGG | + | chr1_2:31908015-31908034 | Msa0067180:CDS | 40.0% | |
| TGAAGGGTTACATGACAACA+AGG | + | chr1_2:31908031-31908050 | Msa0067180:CDS | 40.0% | |
| GAAGGGTTACATGACAACAA+GGG | + | chr1_2:31908032-31908051 | Msa0067180:CDS | 40.0% | |
| GAGTGATTACATGCTTCTTC+TGG | - | chr1_2:31908090-31908109 | None:intergenic | 40.0% | |
| ! | GAAGGTGATGATGAAATGGA+AGG | - | chr1_2:31908123-31908142 | None:intergenic | 40.0% |
| TTCGGAAGAGGTTCATGTAT+TGG | + | chr1_2:31906664-31906683 | Msa0067180:CDS | 40.0% | |
| GTAAAGGTGAGTTTGTGATC+TGG | + | chr1_2:31906747-31906766 | Msa0067180:intron | 40.0% | |
| GTGAACTTTAGTTACTGCTG+TGG | + | chr1_2:31906916-31906935 | Msa0067180:intron | 40.0% | |
| TTAGTTACTGCTGTGGATAG+TGG | + | chr1_2:31906923-31906942 | Msa0067180:intron | 40.0% | |
| !!! | TCAGAGCACTGCAATTTTTG+GGG | + | chr1_2:31906948-31906967 | Msa0067180:CDS | 40.0% |
| AGAGAGAAGTCTGAATCTGA+TGG | + | chr1_2:31906983-31907002 | Msa0067180:CDS | 40.0% | |
| ! | TTTGTTGCCTTAGCCTTTGA+AGG | + | chr1_2:31907102-31907121 | Msa0067180:intron | 40.0% |
| TATTGCATGCCAGAAATGAC+TGG | + | chr1_2:31907145-31907164 | Msa0067180:CDS | 40.0% | |
| TATAACAGACCTGTCTATGC+GGG | - | chr1_2:31907365-31907384 | None:intergenic | 40.0% | |
| ! | ATGTTTGGAAGAAGGTGCAA+AGG | + | chr1_2:31907966-31907985 | Msa0067180:CDS | 40.0% |
| ATGTGATGTGAAACGACTGA+AGG | + | chr1_2:31908014-31908033 | Msa0067180:CDS | 40.0% | |
| TGTGATGTGAAACGACTGAA+GGG | + | chr1_2:31908015-31908034 | Msa0067180:CDS | 40.0% | |
| TGAAGGGTTACATGACAACA+AGG | + | chr1_2:31908031-31908050 | Msa0067180:CDS | 40.0% | |
| GAAGGGTTACATGACAACAA+GGG | + | chr1_2:31908032-31908051 | Msa0067180:CDS | 40.0% | |
| GAGTGATTACATGCTTCTTC+TGG | - | chr1_2:31908090-31908109 | None:intergenic | 40.0% | |
| ! | GAAGGTGATGATGAAATGGA+AGG | - | chr1_2:31908123-31908142 | None:intergenic | 40.0% |
| !!! | AGCACTGCAATTTTTGGGGT+TGG | + | chr1_2:31906952-31906971 | Msa0067180:CDS | 45.0% |
| AGATCCACCTTCAAAGGCTA+AGG | - | chr1_2:31907112-31907131 | None:intergenic | 45.0% | |
| !! | GCAGGAATCGTCCACTTTTA+AGG | + | chr1_2:31907300-31907319 | Msa0067180:intron | 45.0% |
| ATAACAGACCTGTCTATGCG+GGG | - | chr1_2:31907364-31907383 | None:intergenic | 45.0% | |
| TACATGACAACAAGGGAGGT+TGG | + | chr1_2:31908039-31908058 | Msa0067180:CDS | 45.0% | |
| CATCACCTTCATCATCTCCA+TGG | + | chr1_2:31908133-31908152 | Msa0067180:CDS | 45.0% | |
| TGCTTGAGTCTCCAATCAGA+CGG | + | chr1_2:31908169-31908188 | Msa0067180:CDS | 45.0% | |
| !!! | AGCACTGCAATTTTTGGGGT+TGG | + | chr1_2:31906952-31906971 | Msa0067180:CDS | 45.0% |
| AGATCCACCTTCAAAGGCTA+AGG | - | chr1_2:31907112-31907131 | None:intergenic | 45.0% | |
| !! | GCAGGAATCGTCCACTTTTA+AGG | + | chr1_2:31907300-31907319 | Msa0067180:intron | 45.0% |
| ATAACAGACCTGTCTATGCG+GGG | - | chr1_2:31907364-31907383 | None:intergenic | 45.0% | |
| TACATGACAACAAGGGAGGT+TGG | + | chr1_2:31908039-31908058 | Msa0067180:CDS | 45.0% | |
| CATCACCTTCATCATCTCCA+TGG | + | chr1_2:31908133-31908152 | Msa0067180:CDS | 45.0% | |
| TGCTTGAGTCTCCAATCAGA+CGG | + | chr1_2:31908169-31908188 | Msa0067180:CDS | 45.0% | |
| !!! | ATTTTTTTTAAACTTTTTTA+AGG | + | chr1_2:31907384-31907403 | Msa0067180:intron | 5.0% |
| !!! | TTTTTTTTAAACTTTTTTAA+GGG | + | chr1_2:31907385-31907404 | Msa0067180:intron | 5.0% |
| !! | TAATTTATACTTATATATAA+TGG | - | chr1_2:31907718-31907737 | None:intergenic | 5.0% |
| !!! | ATTTTTTTTAAACTTTTTTA+AGG | + | chr1_2:31907384-31907403 | Msa0067180:intron | 5.0% |
| !!! | TTTTTTTTAAACTTTTTTAA+GGG | + | chr1_2:31907385-31907404 | Msa0067180:intron | 5.0% |
| !! | TAATTTATACTTATATATAA+TGG | - | chr1_2:31907718-31907737 | None:intergenic | 5.0% |
| ! | GTTGCCTTAGCCTTTGAAGG+TGG | + | chr1_2:31907105-31907124 | Msa0067180:intron | 50.0% |
| ATATTCTGCCCCGCATAGAC+AGG | + | chr1_2:31907353-31907372 | Msa0067180:CDS | 50.0% | |
| GGGTTACATGACAACAAGGG+AGG | + | chr1_2:31908035-31908054 | Msa0067180:CDS | 50.0% | |
| ACAACAAGGGAGGTTGGAGT+AGG | + | chr1_2:31908045-31908064 | Msa0067180:CDS | 50.0% | |
| GCAGACCATGGAGATGATGA+AGG | - | chr1_2:31908141-31908160 | None:intergenic | 50.0% | |
| AGCACACTAGATGCAGACCA+TGG | - | chr1_2:31908153-31908172 | None:intergenic | 50.0% | |
| ! | GTTGCCTTAGCCTTTGAAGG+TGG | + | chr1_2:31907105-31907124 | Msa0067180:intron | 50.0% |
| ATATTCTGCCCCGCATAGAC+AGG | + | chr1_2:31907353-31907372 | Msa0067180:CDS | 50.0% | |
| GGGTTACATGACAACAAGGG+AGG | + | chr1_2:31908035-31908054 | Msa0067180:CDS | 50.0% | |
| ACAACAAGGGAGGTTGGAGT+AGG | + | chr1_2:31908045-31908064 | Msa0067180:CDS | 50.0% | |
| GCAGACCATGGAGATGATGA+AGG | - | chr1_2:31908141-31908160 | None:intergenic | 50.0% | |
| AGCACACTAGATGCAGACCA+TGG | - | chr1_2:31908153-31908172 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 31906653 | 31908215 | 31906653 | ID=Msa0067180;Name=Msa0067180 |
| chr1_2 | mRNA | 31906653 | 31908215 | 31906653 | ID=Msa0067180-mRNA-1;Parent=Msa0067180;Name=Msa0067180-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0|0|1|1|1|5|0|194 |
| chr1_2 | exon | 31906653 | 31906752 | 31906653 | ID=Msa0067180-mRNA-1:exon:10482;Parent=Msa0067180-mRNA-1 |
| chr1_2 | exon | 31906927 | 31907012 | 31906927 | ID=Msa0067180-mRNA-1:exon:10483;Parent=Msa0067180-mRNA-1 |
| chr1_2 | exon | 31907115 | 31907192 | 31907115 | ID=Msa0067180-mRNA-1:exon:10484;Parent=Msa0067180-mRNA-1 |
| chr1_2 | exon | 31907304 | 31907374 | 31907304 | ID=Msa0067180-mRNA-1:exon:10485;Parent=Msa0067180-mRNA-1 |
| chr1_2 | exon | 31907966 | 31908215 | 31907966 | ID=Msa0067180-mRNA-1:exon:10486;Parent=Msa0067180-mRNA-1 |
| chr1_2 | CDS | 31906653 | 31906752 | 31906653 | ID=Msa0067180-mRNA-1:cds;Parent=Msa0067180-mRNA-1 |
| chr1_2 | CDS | 31906927 | 31907012 | 31906927 | ID=Msa0067180-mRNA-1:cds;Parent=Msa0067180-mRNA-1 |
| chr1_2 | CDS | 31907115 | 31907192 | 31907115 | ID=Msa0067180-mRNA-1:cds;Parent=Msa0067180-mRNA-1 |
| chr1_2 | CDS | 31907304 | 31907374 | 31907304 | ID=Msa0067180-mRNA-1:cds;Parent=Msa0067180-mRNA-1 |
| chr1_2 | CDS | 31907966 | 31908215 | 31907966 | ID=Msa0067180-mRNA-1:cds;Parent=Msa0067180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
