Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0067690 | RHN78227.1 | 90.705 | 312 | 28 | 1 | 1 | 312 | 1 | 311 | 0.0 | 542 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0067690 | sp|Q84R27|Y3896_ARATH | 34.653 | 101 | 65 | 1 | 11 | 111 | 30 | 129 | 7.27e-14 | 72.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0067690 | A0A396JU70 | 90.705 | 312 | 28 | 1 | 1 | 312 | 1 | 311 | 0.0 | 542 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0067690 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0067690 | MtrunA17_Chr1g0163221 | 90.705 | 312 | 28 | 1 | 1 | 312 | 1 | 311 | 0.0 | 542 |
| Msa0067690 | MtrunA17_Chr4g0067431 | 64.329 | 328 | 89 | 7 | 1 | 304 | 1 | 324 | 7.02e-141 | 400 |
| Msa0067690 | MtrunA17_Chr6g0467351 | 59.664 | 238 | 71 | 4 | 1 | 220 | 1 | 231 | 1.50e-94 | 280 |
| Msa0067690 | MtrunA17_Chr1g0163061 | 50.943 | 265 | 66 | 4 | 1 | 201 | 1 | 265 | 2.91e-66 | 209 |
| Msa0067690 | MtrunA17_Chr1g0163131 | 32.990 | 291 | 172 | 11 | 3 | 277 | 10 | 293 | 1.32e-33 | 125 |
| Msa0067690 | MtrunA17_Chr1g0163071 | 28.526 | 312 | 175 | 9 | 27 | 304 | 2 | 299 | 5.76e-30 | 115 |
| Msa0067690 | MtrunA17_Chr6g0467361 | 66.292 | 89 | 26 | 3 | 214 | 299 | 7 | 94 | 1.84e-29 | 108 |
| Msa0067690 | MtrunA17_Chr3g0131891 | 28.621 | 290 | 196 | 7 | 9 | 291 | 17 | 302 | 2.99e-29 | 114 |
| Msa0067690 | MtrunA17_Chr7g0233561 | 29.371 | 286 | 182 | 8 | 9 | 277 | 16 | 298 | 5.70e-29 | 113 |
| Msa0067690 | MtrunA17_Chr1g0163181 | 29.452 | 292 | 181 | 11 | 15 | 290 | 9 | 291 | 7.16e-29 | 115 |
| Msa0067690 | MtrunA17_Chr3g0103181 | 28.669 | 293 | 176 | 10 | 9 | 291 | 10 | 279 | 1.71e-28 | 111 |
| Msa0067690 | MtrunA17_Chr1g0163251 | 29.703 | 303 | 196 | 10 | 20 | 316 | 14 | 305 | 4.09e-28 | 112 |
| Msa0067690 | MtrunA17_Chr1g0163231 | 30.070 | 286 | 156 | 9 | 11 | 279 | 9 | 267 | 5.29e-28 | 110 |
| Msa0067690 | MtrunA17_Chr1g0163261 | 29.021 | 286 | 184 | 9 | 11 | 290 | 9 | 281 | 2.37e-27 | 108 |
| Msa0067690 | MtrunA17_Chr8g0390841 | 27.010 | 311 | 200 | 10 | 9 | 300 | 37 | 339 | 5.02e-27 | 110 |
| Msa0067690 | MtrunA17_Chr1g0208771 | 25.862 | 290 | 187 | 8 | 27 | 296 | 13 | 294 | 6.96e-27 | 109 |
| Msa0067690 | MtrunA17_Chr3g0103191 | 28.689 | 244 | 151 | 8 | 9 | 246 | 10 | 236 | 3.92e-25 | 101 |
| Msa0067690 | MtrunA17_Chr3g0103171 | 28.102 | 274 | 174 | 8 | 27 | 291 | 6 | 265 | 9.31e-25 | 100 |
| Msa0067690 | MtrunA17_Chr1g0163201 | 29.537 | 281 | 136 | 9 | 27 | 275 | 19 | 269 | 1.45e-24 | 102 |
| Msa0067690 | MtrunA17_Chr7g0233521 | 29.008 | 262 | 161 | 7 | 27 | 277 | 2 | 249 | 8.38e-24 | 98.6 |
| Msa0067690 | MtrunA17_Chr7g0233541 | 27.612 | 268 | 174 | 7 | 27 | 277 | 2 | 266 | 8.91e-23 | 95.9 |
| Msa0067690 | MtrunA17_Chr1g0171611 | 26.909 | 275 | 167 | 8 | 11 | 279 | 9 | 255 | 7.02e-22 | 93.6 |
| Msa0067690 | MtrunA17_Chr3g0103151 | 37.333 | 150 | 82 | 7 | 9 | 149 | 10 | 156 | 6.39e-21 | 87.8 |
| Msa0067690 | MtrunA17_Chr7g0233531 | 27.692 | 260 | 167 | 6 | 27 | 277 | 2 | 249 | 1.19e-20 | 89.7 |
| Msa0067690 | MtrunA17_Chr7g0233571 | 39.130 | 115 | 69 | 1 | 9 | 123 | 8 | 121 | 1.71e-20 | 88.2 |
| Msa0067690 | MtrunA17_Chr1g0163101 | 31.977 | 172 | 93 | 6 | 6 | 165 | 12 | 171 | 2.77e-20 | 86.7 |
| Msa0067690 | MtrunA17_Chr5g0419201 | 36.527 | 167 | 83 | 7 | 11 | 155 | 16 | 181 | 4.47e-20 | 86.3 |
| Msa0067690 | MtrunA17_Chr1g0163121 | 36.434 | 129 | 68 | 4 | 25 | 143 | 9 | 133 | 1.30e-18 | 80.9 |
| Msa0067690 | MtrunA17_Chr1g0154161 | 25.424 | 295 | 167 | 12 | 9 | 277 | 28 | 295 | 1.00e-17 | 82.4 |
| Msa0067690 | MtrunA17_Chr1g0154131 | 26.351 | 296 | 170 | 13 | 9 | 277 | 182 | 456 | 2.31e-17 | 82.4 |
| Msa0067690 | MtrunA17_Chr6g0476181 | 40.171 | 117 | 62 | 5 | 27 | 140 | 2 | 113 | 2.85e-17 | 77.8 |
| Msa0067690 | MtrunA17_Chr1g0163081 | 32.215 | 149 | 78 | 5 | 27 | 165 | 6 | 141 | 3.21e-17 | 77.4 |
| Msa0067690 | MtrunA17_Chr3g0077411 | 24.068 | 295 | 154 | 8 | 2 | 289 | 16 | 247 | 8.40e-16 | 77.8 |
| Msa0067690 | MtrunA17_Chr3g0077411 | 23.232 | 297 | 178 | 10 | 9 | 293 | 260 | 518 | 4.40e-13 | 69.7 |
| Msa0067690 | MtrunA17_Chr1g0163191 | 40.196 | 102 | 58 | 2 | 20 | 121 | 14 | 112 | 1.35e-15 | 73.2 |
| Msa0067690 | MtrunA17_Chr1g0162161 | 31.544 | 149 | 84 | 5 | 27 | 165 | 4 | 144 | 7.93e-15 | 71.2 |
| Msa0067690 | MtrunA17_Chr1g0154191 | 24.471 | 331 | 180 | 15 | 9 | 277 | 20 | 342 | 1.37e-14 | 73.6 |
| Msa0067690 | MtrunA17_Chr3g0103201 | 28.755 | 233 | 139 | 9 | 70 | 291 | 4 | 220 | 1.52e-14 | 71.6 |
| Msa0067690 | MtrunA17_Chr1g0163241 | 33.929 | 112 | 71 | 2 | 27 | 138 | 23 | 131 | 1.58e-14 | 70.5 |
| Msa0067690 | MtrunA17_Chr5g0429931 | 25.830 | 271 | 155 | 10 | 27 | 291 | 11 | 241 | 3.14e-14 | 71.2 |
| Msa0067690 | MtrunA17_Chr3g0077451 | 25.979 | 281 | 137 | 12 | 25 | 291 | 10 | 233 | 5.56e-14 | 70.5 |
| Msa0067690 | MtrunA17_Chr3g0077461 | 29.775 | 178 | 112 | 4 | 10 | 175 | 236 | 412 | 2.32e-13 | 70.5 |
| Msa0067690 | MtrunA17_Chr1g0154151 | 26.573 | 286 | 173 | 11 | 26 | 277 | 19 | 301 | 2.77e-13 | 69.7 |
| Msa0067690 | MtrunA17_Chr1g0163141 | 31.200 | 125 | 73 | 3 | 25 | 140 | 9 | 129 | 4.84e-12 | 63.9 |
| Msa0067690 | MtrunA17_Chr1g0154171 | 24.138 | 319 | 184 | 13 | 9 | 277 | 21 | 331 | 1.18e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0067690 | AT3G18990.2 | 26.012 | 346 | 189 | 11 | 11 | 298 | 6 | 342 | 1.77e-21 | 94.0 |
| Msa0067690 | AT3G18990.1 | 25.904 | 332 | 180 | 10 | 11 | 284 | 6 | 329 | 2.24e-21 | 93.2 |
| Msa0067690 | AT3G18960.1 | 34.653 | 101 | 65 | 1 | 11 | 111 | 30 | 129 | 7.39e-15 | 72.8 |
| Msa0067690 | AT3G18960.2 | 34.653 | 101 | 65 | 1 | 11 | 111 | 30 | 129 | 8.88e-15 | 72.0 |
| Msa0067690 | AT1G49475.1 | 35.135 | 111 | 70 | 2 | 11 | 121 | 34 | 142 | 1.20e-13 | 68.9 |
| Msa0067690 | AT4G01580.1 | 32.673 | 101 | 67 | 1 | 11 | 111 | 30 | 129 | 1.34e-13 | 68.6 |
| Msa0067690 | AT4G33280.1 | 23.466 | 277 | 176 | 5 | 24 | 275 | 36 | 301 | 1.34e-13 | 70.9 |
| Msa0067690 | AT3G18960.3 | 35.294 | 85 | 54 | 1 | 27 | 111 | 9 | 92 | 7.06e-11 | 60.5 |
Find 37 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGGAAACCTTAGAGTAAT+TGG | 0.167691 | 1_2:+32720866 | None:intergenic |
| ATTTATCTTTGTCAACAAAA+AGG | 0.196489 | 1_2:+32719932 | None:intergenic |
| GAAGAGAATAATTTGAAATT+TGG | 0.198679 | 1_2:-32719847 | Msa0067690:CDS |
| CTCTATCAATGTATGACTTT+TGG | 0.220204 | 1_2:+32720283 | None:intergenic |
| TATAATTTACCTTCAAAATA+AGG | 0.255936 | 1_2:+32719736 | None:intergenic |
| CTTCGTCATCACAGGGTAAA+AGG | 0.295153 | 1_2:-32720595 | Msa0067690:CDS |
| AAGTAGTTGTGATGATATTA+AGG | 0.299219 | 1_2:-32720379 | Msa0067690:CDS |
| TTCTTACAAACTTTCATAGA+TGG | 0.310675 | 1_2:+32720557 | None:intergenic |
| TAACAAACCCAATTACTCTA+AGG | 0.340216 | 1_2:-32720874 | Msa0067690:CDS |
| GTCTTTAATGTGATTGTATT+CGG | 0.340889 | 1_2:-32720707 | Msa0067690:CDS |
| ATTTCAAATTATTCTCTTCA+CGG | 0.368199 | 1_2:+32719851 | None:intergenic |
| GAGAAAATAACAACTTGAAA+TGG | 0.395512 | 1_2:+32719781 | None:intergenic |
| TTTCTCTTTGGAAAAGGACT+TGG | 0.399841 | 1_2:-32719764 | Msa0067690:CDS |
| TGTGTCTTAACAAATTCATT+TGG | 0.404885 | 1_2:+32719988 | None:intergenic |
| CTTCCCTAGTTTCTCTTGAC+GGG | 0.422598 | 1_2:+32720660 | None:intergenic |
| TGAATTTGTTAAGACACATA+TGG | 0.433535 | 1_2:-32719983 | Msa0067690:CDS |
| TCTTCCCTAGTTTCTCTTGA+CGG | 0.433773 | 1_2:+32720659 | None:intergenic |
| TTGGAAACCTTAGAGTAATT+GGG | 0.442652 | 1_2:+32720867 | None:intergenic |
| TGAGAATCCTTCGTCATCAC+AGG | 0.459209 | 1_2:-32720603 | Msa0067690:CDS |
| TACTCTAAGGTTTCCAAACA+TGG | 0.467994 | 1_2:-32720861 | Msa0067690:CDS |
| TATATTTGATTAGTGTCCAT+CGG | 0.520813 | 1_2:-32719717 | Msa0067690:CDS |
| AATACCCGTCAAGAGAAACT+AGG | 0.533719 | 1_2:-32720664 | Msa0067690:CDS |
| ATACATTGATAGAGATCGCT+TGG | 0.539899 | 1_2:-32720274 | Msa0067690:intron |
| TTTGTGAAAAGGTATTGGAA+AGG | 0.553882 | 1_2:-32720899 | Msa0067690:CDS |
| CATATTAAATGAATTTCCGA+TGG | 0.570683 | 1_2:+32719701 | None:intergenic |
| AATCTGCACTAACTTGTGGT+TGG | 0.573287 | 1_2:-32719882 | Msa0067690:CDS |
| ATACCCGTCAAGAGAAACTA+GGG | 0.582374 | 1_2:-32720663 | Msa0067690:CDS |
| TAAGACACATATGGACATGA+TGG | 0.584937 | 1_2:-32719974 | Msa0067690:CDS |
| GTGATTGTATTCGGTAGATG+TGG | 0.588390 | 1_2:-32720698 | Msa0067690:CDS |
| AAACAATCTGCACTAACTTG+TGG | 0.589005 | 1_2:-32719886 | Msa0067690:CDS |
| ATGTCTTCTCAAGAGAGTAA+TGG | 0.609709 | 1_2:-32721330 | Msa0067690:CDS |
| GAATACAATCACATTAAAGA+CGG | 0.610018 | 1_2:+32720709 | None:intergenic |
| ATTACTCTCTTGAGAAGACA+TGG | 0.618980 | 1_2:+32721332 | None:intergenic |
| ACACATATGGACATGATGGA+AGG | 0.627742 | 1_2:-32719970 | Msa0067690:CDS |
| GAGAATCCTTCGTCATCACA+GGG | 0.633974 | 1_2:-32720602 | Msa0067690:CDS |
| TCTAAGGTTTCCAAACATGG+TGG | 0.644869 | 1_2:-32720858 | Msa0067690:CDS |
| AAGCGTGAGCATGTGAACAA+TGG | 0.705898 | 1_2:-32720500 | Msa0067690:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTGCTACTAATTTTTTT+TGG | - | chr1_2:32720610-32720629 | Msa0067690:CDS | 15.0% |
| !! | TATAATTTACCTTCAAAATA+AGG | + | chr1_2:32721302-32721321 | None:intergenic | 15.0% |
| !!! | TTTTTGCTACTAATTTTTTT+TGG | - | chr1_2:32720610-32720629 | Msa0067690:CDS | 15.0% |
| !! | TATAATTTACCTTCAAAATA+AGG | + | chr1_2:32721302-32721321 | None:intergenic | 15.0% |
| !! | TTACATATTGTGAAAAATCA+AGG | + | chr1_2:32719806-32719825 | None:intergenic | 20.0% |
| !! | TAAATATGCATTGCAAAATT+TGG | - | chr1_2:32719823-32719842 | Msa0067690:CDS | 20.0% |
| !!! | TTTGAATGAATCACAATTTT+TGG | - | chr1_2:32720282-32720301 | Msa0067690:CDS | 20.0% |
| !!! | TGAATTCTTATTTTTTTAGC+AGG | - | chr1_2:32720633-32720652 | Msa0067690:CDS | 20.0% |
| !!! | CTTTAAAAATACCTACATAA+TGG | - | chr1_2:32720894-32720913 | Msa0067690:CDS | 20.0% |
| !! | AACTATATGTGTGTATTTAT+AGG | - | chr1_2:32721019-32721038 | Msa0067690:intron | 20.0% |
| !! | TTTATCTTTGTCAACAAAAA+GGG | + | chr1_2:32721105-32721124 | None:intergenic | 20.0% |
| !! | ATTTATCTTTGTCAACAAAA+AGG | + | chr1_2:32721106-32721125 | None:intergenic | 20.0% |
| !!! | TTTTTGTTGACAAAGATAAA+TGG | - | chr1_2:32721105-32721124 | Msa0067690:intron | 20.0% |
| !! | ATTTCAAATTATTCTCTTCA+CGG | + | chr1_2:32721187-32721206 | None:intergenic | 20.0% |
| !!! | GAAGAGAATAATTTGAAATT+TGG | - | chr1_2:32721188-32721207 | Msa0067690:intron | 20.0% |
| !! | TTACATATTGTGAAAAATCA+AGG | + | chr1_2:32719806-32719825 | None:intergenic | 20.0% |
| !! | TAAATATGCATTGCAAAATT+TGG | - | chr1_2:32719823-32719842 | Msa0067690:CDS | 20.0% |
| !!! | TTTGAATGAATCACAATTTT+TGG | - | chr1_2:32720282-32720301 | Msa0067690:CDS | 20.0% |
| !!! | TGAATTCTTATTTTTTTAGC+AGG | - | chr1_2:32720633-32720652 | Msa0067690:CDS | 20.0% |
| !!! | CTTTAAAAATACCTACATAA+TGG | - | chr1_2:32720894-32720913 | Msa0067690:CDS | 20.0% |
| !! | AACTATATGTGTGTATTTAT+AGG | - | chr1_2:32721019-32721038 | Msa0067690:intron | 20.0% |
| !! | TTTATCTTTGTCAACAAAAA+GGG | + | chr1_2:32721105-32721124 | None:intergenic | 20.0% |
| !! | ATTTATCTTTGTCAACAAAA+AGG | + | chr1_2:32721106-32721125 | None:intergenic | 20.0% |
| !!! | TTTTTGTTGACAAAGATAAA+TGG | - | chr1_2:32721105-32721124 | Msa0067690:intron | 20.0% |
| !! | ATTTCAAATTATTCTCTTCA+CGG | + | chr1_2:32721187-32721206 | None:intergenic | 20.0% |
| !!! | GAAGAGAATAATTTGAAATT+TGG | - | chr1_2:32721188-32721207 | Msa0067690:intron | 20.0% |
| ! | AATGATTGTTCGAATATCAA+CGG | - | chr1_2:32719966-32719985 | Msa0067690:CDS | 25.0% |
| !! | TACCTTTTCACAAAACTTAT+GGG | + | chr1_2:32720130-32720149 | None:intergenic | 25.0% |
| !! | ATACCTTTTCACAAAACTTA+TGG | + | chr1_2:32720131-32720150 | None:intergenic | 25.0% |
| !!! | TAAGTTTTGTGAAAAGGTAT+TGG | - | chr1_2:32720131-32720150 | Msa0067690:intron | 25.0% |
| !! | TATGAAGTTATGTTTTGCAA+TGG | - | chr1_2:32720232-32720251 | Msa0067690:intron | 25.0% |
| ! | GAATACAATCACATTAAAGA+CGG | + | chr1_2:32720329-32720348 | None:intergenic | 25.0% |
| ! | GTCTTTAATGTGATTGTATT+CGG | - | chr1_2:32720328-32720347 | Msa0067690:CDS | 25.0% |
| ! | TTCTTACAAACTTTCATAGA+TGG | + | chr1_2:32720481-32720500 | None:intergenic | 25.0% |
| ! | AAGTAGTTGTGATGATATTA+AGG | - | chr1_2:32720656-32720675 | Msa0067690:CDS | 25.0% |
| ! | CCAATTATGGTATACTAATT+TGG | + | chr1_2:32720847-32720866 | None:intergenic | 25.0% |
| ! | CCAAATTAGTATACCATAAT+TGG | - | chr1_2:32720844-32720863 | Msa0067690:CDS | 25.0% |
| ! | AATATAGCAAAGTCCAATTA+TGG | + | chr1_2:32720860-32720879 | None:intergenic | 25.0% |
| ! | TGTGTCTTAACAAATTCATT+TGG | + | chr1_2:32721050-32721069 | None:intergenic | 25.0% |
| !!! | TGAATTTGTTAAGACACATA+TGG | - | chr1_2:32721052-32721071 | Msa0067690:intron | 25.0% |
| ! | GAGAAAATAACAACTTGAAA+TGG | + | chr1_2:32721257-32721276 | None:intergenic | 25.0% |
| !!! | TCAAGTTGTTATTTTCTCTT+TGG | - | chr1_2:32721259-32721278 | Msa0067690:intron | 25.0% |
| !!! | TGTTATTTTCTCTTTGGAAA+AGG | - | chr1_2:32721265-32721284 | Msa0067690:intron | 25.0% |
| ! | TATATTTGATTAGTGTCCAT+CGG | - | chr1_2:32721318-32721337 | Msa0067690:CDS | 25.0% |
| ! | AATGATTGTTCGAATATCAA+CGG | - | chr1_2:32719966-32719985 | Msa0067690:CDS | 25.0% |
| !! | TACCTTTTCACAAAACTTAT+GGG | + | chr1_2:32720130-32720149 | None:intergenic | 25.0% |
| !! | ATACCTTTTCACAAAACTTA+TGG | + | chr1_2:32720131-32720150 | None:intergenic | 25.0% |
| !!! | TAAGTTTTGTGAAAAGGTAT+TGG | - | chr1_2:32720131-32720150 | Msa0067690:intron | 25.0% |
| !! | TATGAAGTTATGTTTTGCAA+TGG | - | chr1_2:32720232-32720251 | Msa0067690:intron | 25.0% |
| ! | GAATACAATCACATTAAAGA+CGG | + | chr1_2:32720329-32720348 | None:intergenic | 25.0% |
| ! | GTCTTTAATGTGATTGTATT+CGG | - | chr1_2:32720328-32720347 | Msa0067690:CDS | 25.0% |
| ! | TTCTTACAAACTTTCATAGA+TGG | + | chr1_2:32720481-32720500 | None:intergenic | 25.0% |
| ! | AAGTAGTTGTGATGATATTA+AGG | - | chr1_2:32720656-32720675 | Msa0067690:CDS | 25.0% |
| ! | CCAATTATGGTATACTAATT+TGG | + | chr1_2:32720847-32720866 | None:intergenic | 25.0% |
| ! | CCAAATTAGTATACCATAAT+TGG | - | chr1_2:32720844-32720863 | Msa0067690:CDS | 25.0% |
| ! | AATATAGCAAAGTCCAATTA+TGG | + | chr1_2:32720860-32720879 | None:intergenic | 25.0% |
| ! | TGTGTCTTAACAAATTCATT+TGG | + | chr1_2:32721050-32721069 | None:intergenic | 25.0% |
| !!! | TGAATTTGTTAAGACACATA+TGG | - | chr1_2:32721052-32721071 | Msa0067690:intron | 25.0% |
| ! | GAGAAAATAACAACTTGAAA+TGG | + | chr1_2:32721257-32721276 | None:intergenic | 25.0% |
| !!! | TCAAGTTGTTATTTTCTCTT+TGG | - | chr1_2:32721259-32721278 | Msa0067690:intron | 25.0% |
| !!! | TGTTATTTTCTCTTTGGAAA+AGG | - | chr1_2:32721265-32721284 | Msa0067690:intron | 25.0% |
| ! | TATATTTGATTAGTGTCCAT+CGG | - | chr1_2:32721318-32721337 | Msa0067690:CDS | 25.0% |
| !!! | TAATGGTGTCCACTTTTTTA+AGG | - | chr1_2:32719722-32719741 | Msa0067690:CDS | 30.0% |
| GACGAATAACCTTAAAAAAG+TGG | + | chr1_2:32719734-32719753 | None:intergenic | 30.0% | |
| ! | TACCAGTTTTTCTTCTTGAA+GGG | + | chr1_2:32719763-32719782 | None:intergenic | 30.0% |
| ! | TTACCAGTTTTTCTTCTTGA+AGG | + | chr1_2:32719764-32719783 | None:intergenic | 30.0% |
| !! | TTTGTGAAAAGGTATTGGAA+AGG | - | chr1_2:32720136-32720155 | Msa0067690:intron | 30.0% |
| TAACAAACCCAATTACTCTA+AGG | - | chr1_2:32720161-32720180 | Msa0067690:intron | 30.0% | |
| TTGGAAACCTTAGAGTAATT+GGG | + | chr1_2:32720171-32720190 | None:intergenic | 30.0% | |
| TTTGGAAACCTTAGAGTAAT+TGG | + | chr1_2:32720172-32720191 | None:intergenic | 30.0% | |
| !!! | TGGTGGAAAAGAAAGTTTTT+TGG | - | chr1_2:32720194-32720213 | Msa0067690:intron | 30.0% |
| !!! | GGTGGAAAAGAAAGTTTTTT+GGG | - | chr1_2:32720195-32720214 | Msa0067690:intron | 30.0% |
| ! | AAGTTATGTTTTGCAATGGT+TGG | - | chr1_2:32720236-32720255 | Msa0067690:intron | 30.0% |
| !!! | CGAATTTTTTCTTCACTTTC+TGG | + | chr1_2:32720701-32720720 | None:intergenic | 30.0% |
| GAAAAAATTCGACTCTGATA+AGG | - | chr1_2:32720710-32720729 | Msa0067690:CDS | 30.0% | |
| ! | CTCTATCAATGTATGACTTT+TGG | + | chr1_2:32720755-32720774 | None:intergenic | 30.0% |
| CAAATCACAATCCATTATGT+AGG | + | chr1_2:32720908-32720927 | None:intergenic | 30.0% | |
| !! | CTACATAATGGATTGTGATT+TGG | - | chr1_2:32720906-32720925 | Msa0067690:CDS | 30.0% |
| !! | TGTGTTTTTGTGCTAAACAA+AGG | - | chr1_2:32721218-32721237 | Msa0067690:intron | 30.0% |
| !!! | TTGGAAACTCCTTATTTTGA+AGG | - | chr1_2:32721290-32721309 | Msa0067690:CDS | 30.0% |
| !!! | TAATGGTGTCCACTTTTTTA+AGG | - | chr1_2:32719722-32719741 | Msa0067690:CDS | 30.0% |
| GACGAATAACCTTAAAAAAG+TGG | + | chr1_2:32719734-32719753 | None:intergenic | 30.0% | |
| ! | TACCAGTTTTTCTTCTTGAA+GGG | + | chr1_2:32719763-32719782 | None:intergenic | 30.0% |
| ! | TTACCAGTTTTTCTTCTTGA+AGG | + | chr1_2:32719764-32719783 | None:intergenic | 30.0% |
| !! | TTTGTGAAAAGGTATTGGAA+AGG | - | chr1_2:32720136-32720155 | Msa0067690:intron | 30.0% |
| TAACAAACCCAATTACTCTA+AGG | - | chr1_2:32720161-32720180 | Msa0067690:intron | 30.0% | |
| TTGGAAACCTTAGAGTAATT+GGG | + | chr1_2:32720171-32720190 | None:intergenic | 30.0% | |
| TTTGGAAACCTTAGAGTAAT+TGG | + | chr1_2:32720172-32720191 | None:intergenic | 30.0% | |
| !!! | TGGTGGAAAAGAAAGTTTTT+TGG | - | chr1_2:32720194-32720213 | Msa0067690:intron | 30.0% |
| !!! | GGTGGAAAAGAAAGTTTTTT+GGG | - | chr1_2:32720195-32720214 | Msa0067690:intron | 30.0% |
| ! | AAGTTATGTTTTGCAATGGT+TGG | - | chr1_2:32720236-32720255 | Msa0067690:intron | 30.0% |
| !!! | CGAATTTTTTCTTCACTTTC+TGG | + | chr1_2:32720701-32720720 | None:intergenic | 30.0% |
| GAAAAAATTCGACTCTGATA+AGG | - | chr1_2:32720710-32720729 | Msa0067690:CDS | 30.0% | |
| ! | CTCTATCAATGTATGACTTT+TGG | + | chr1_2:32720755-32720774 | None:intergenic | 30.0% |
| CAAATCACAATCCATTATGT+AGG | + | chr1_2:32720908-32720927 | None:intergenic | 30.0% | |
| !! | CTACATAATGGATTGTGATT+TGG | - | chr1_2:32720906-32720925 | Msa0067690:CDS | 30.0% |
| !! | TGTGTTTTTGTGCTAAACAA+AGG | - | chr1_2:32721218-32721237 | Msa0067690:intron | 30.0% |
| !!! | TTGGAAACTCCTTATTTTGA+AGG | - | chr1_2:32721290-32721309 | Msa0067690:CDS | 30.0% |
| ATGTCTTCTCAAGAGAGTAA+TGG | - | chr1_2:32719705-32719724 | Msa0067690:CDS | 35.0% | |
| TACCCTTCAAGAAGAAAAAC+TGG | - | chr1_2:32719758-32719777 | Msa0067690:CDS | 35.0% | |
| !! | TGCCCATAAGTTTTGTGAAA+AGG | - | chr1_2:32720125-32720144 | Msa0067690:intron | 35.0% |
| !! | TACTCTAAGGTTTCCAAACA+TGG | - | chr1_2:32720174-32720193 | Msa0067690:intron | 35.0% |
| ! | ACTTTCTTTTCCACCATGTT+TGG | + | chr1_2:32720190-32720209 | None:intergenic | 35.0% |
| ATACATTGATAGAGATCGCT+TGG | - | chr1_2:32720761-32720780 | Msa0067690:CDS | 35.0% | |
| TAAGACACATATGGACATGA+TGG | - | chr1_2:32721061-32721080 | Msa0067690:intron | 35.0% | |
| AAACAATCTGCACTAACTTG+TGG | - | chr1_2:32721149-32721168 | Msa0067690:intron | 35.0% | |
| ! | TTTCTCTTTGGAAAAGGACT+TGG | - | chr1_2:32721271-32721290 | Msa0067690:intron | 35.0% |
| ATGTCTTCTCAAGAGAGTAA+TGG | - | chr1_2:32719705-32719724 | Msa0067690:CDS | 35.0% | |
| TACCCTTCAAGAAGAAAAAC+TGG | - | chr1_2:32719758-32719777 | Msa0067690:CDS | 35.0% | |
| !! | TGCCCATAAGTTTTGTGAAA+AGG | - | chr1_2:32720125-32720144 | Msa0067690:intron | 35.0% |
| !! | TACTCTAAGGTTTCCAAACA+TGG | - | chr1_2:32720174-32720193 | Msa0067690:intron | 35.0% |
| ! | ACTTTCTTTTCCACCATGTT+TGG | + | chr1_2:32720190-32720209 | None:intergenic | 35.0% |
| ATACATTGATAGAGATCGCT+TGG | - | chr1_2:32720761-32720780 | Msa0067690:CDS | 35.0% | |
| TAAGACACATATGGACATGA+TGG | - | chr1_2:32721061-32721080 | Msa0067690:intron | 35.0% | |
| AAACAATCTGCACTAACTTG+TGG | - | chr1_2:32721149-32721168 | Msa0067690:intron | 35.0% | |
| ! | TTTCTCTTTGGAAAAGGACT+TGG | - | chr1_2:32721271-32721290 | Msa0067690:intron | 35.0% |
| ! | TCTAAGGTTTCCAAACATGG+TGG | - | chr1_2:32720177-32720196 | Msa0067690:intron | 40.0% |
| GTGATTGTATTCGGTAGATG+TGG | - | chr1_2:32720337-32720356 | Msa0067690:CDS | 40.0% | |
| AATACCCGTCAAGAGAAACT+AGG | - | chr1_2:32720371-32720390 | Msa0067690:CDS | 40.0% | |
| ATACCCGTCAAGAGAAACTA+GGG | - | chr1_2:32720372-32720391 | Msa0067690:CDS | 40.0% | |
| TCTTCCCTAGTTTCTCTTGA+CGG | + | chr1_2:32720379-32720398 | None:intergenic | 40.0% | |
| ! | ACACATATGGACATGATGGA+AGG | - | chr1_2:32721065-32721084 | Msa0067690:intron | 40.0% |
| ! | AATCTGCACTAACTTGTGGT+TGG | - | chr1_2:32721153-32721172 | Msa0067690:intron | 40.0% |
| ! | TCTAAGGTTTCCAAACATGG+TGG | - | chr1_2:32720177-32720196 | Msa0067690:intron | 40.0% |
| GTGATTGTATTCGGTAGATG+TGG | - | chr1_2:32720337-32720356 | Msa0067690:CDS | 40.0% | |
| AATACCCGTCAAGAGAAACT+AGG | - | chr1_2:32720371-32720390 | Msa0067690:CDS | 40.0% | |
| ATACCCGTCAAGAGAAACTA+GGG | - | chr1_2:32720372-32720391 | Msa0067690:CDS | 40.0% | |
| TCTTCCCTAGTTTCTCTTGA+CGG | + | chr1_2:32720379-32720398 | None:intergenic | 40.0% | |
| ! | ACACATATGGACATGATGGA+AGG | - | chr1_2:32721065-32721084 | Msa0067690:intron | 40.0% |
| ! | AATCTGCACTAACTTGTGGT+TGG | - | chr1_2:32721153-32721172 | Msa0067690:intron | 40.0% |
| CTTCCCTAGTTTCTCTTGAC+GGG | + | chr1_2:32720378-32720397 | None:intergenic | 45.0% | |
| TGAGAATCCTTCGTCATCAC+AGG | - | chr1_2:32720432-32720451 | Msa0067690:intron | 45.0% | |
| GAGAATCCTTCGTCATCACA+GGG | - | chr1_2:32720433-32720452 | Msa0067690:intron | 45.0% | |
| !! | CTTTTACCCTGTGATGACGA+AGG | + | chr1_2:32720442-32720461 | None:intergenic | 45.0% |
| CTTCGTCATCACAGGGTAAA+AGG | - | chr1_2:32720440-32720459 | Msa0067690:intron | 45.0% | |
| AAGCGTGAGCATGTGAACAA+TGG | - | chr1_2:32720535-32720554 | Msa0067690:CDS | 45.0% | |
| GTGAGCATGTGAACAATGGT+TGG | - | chr1_2:32720539-32720558 | Msa0067690:CDS | 45.0% | |
| CTTCCCTAGTTTCTCTTGAC+GGG | + | chr1_2:32720378-32720397 | None:intergenic | 45.0% | |
| TGAGAATCCTTCGTCATCAC+AGG | - | chr1_2:32720432-32720451 | Msa0067690:intron | 45.0% | |
| GAGAATCCTTCGTCATCACA+GGG | - | chr1_2:32720433-32720452 | Msa0067690:intron | 45.0% | |
| !! | CTTTTACCCTGTGATGACGA+AGG | + | chr1_2:32720442-32720461 | None:intergenic | 45.0% |
| CTTCGTCATCACAGGGTAAA+AGG | - | chr1_2:32720440-32720459 | Msa0067690:intron | 45.0% | |
| AAGCGTGAGCATGTGAACAA+TGG | - | chr1_2:32720535-32720554 | Msa0067690:CDS | 45.0% | |
| GTGAGCATGTGAACAATGGT+TGG | - | chr1_2:32720539-32720558 | Msa0067690:CDS | 45.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 32719705 | 32721352 | 32719705 | ID=Msa0067690;Name=Msa0067690 |
| chr1_2 | mRNA | 32719705 | 32721352 | 32719705 | ID=Msa0067690-mRNA-1;Parent=Msa0067690;Name=Msa0067690-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|1|1|1|4|0|316 |
| chr1_2 | exon | 32721278 | 32721352 | 32721278 | ID=Msa0067690-mRNA-1:exon:10782;Parent=Msa0067690-mRNA-1 |
| chr1_2 | exon | 32720501 | 32720936 | 32720501 | ID=Msa0067690-mRNA-1:exon:10781;Parent=Msa0067690-mRNA-1 |
| chr1_2 | exon | 32720275 | 32720402 | 32720275 | ID=Msa0067690-mRNA-1:exon:10780;Parent=Msa0067690-mRNA-1 |
| chr1_2 | exon | 32719705 | 32720016 | 32719705 | ID=Msa0067690-mRNA-1:exon:10779;Parent=Msa0067690-mRNA-1 |
| chr1_2 | CDS | 32721278 | 32721352 | 32721278 | ID=Msa0067690-mRNA-1:cds;Parent=Msa0067690-mRNA-1 |
| chr1_2 | CDS | 32720501 | 32720936 | 32720501 | ID=Msa0067690-mRNA-1:cds;Parent=Msa0067690-mRNA-1 |
| chr1_2 | CDS | 32720275 | 32720402 | 32720275 | ID=Msa0067690-mRNA-1:cds;Parent=Msa0067690-mRNA-1 |
| chr1_2 | CDS | 32719705 | 32720016 | 32719705 | ID=Msa0067690-mRNA-1:cds;Parent=Msa0067690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
