Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0067710 | KEH40808.1 | 80.843 | 522 | 43 | 2 | 1 | 522 | 1 | 465 | 0.0 | 831 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0067710 | sp|Q8L3W1|VRN1_ARATH | 25.225 | 333 | 184 | 9 | 7 | 277 | 4 | 333 | 1.31e-20 | 96.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0067710 | A0A072VHA4 | 80.843 | 522 | 43 | 2 | 1 | 522 | 1 | 465 | 0.0 | 831 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0067710 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0067710 | MtrunA17_Chr1g0163251 | 83.688 | 423 | 37 | 1 | 1 | 423 | 1 | 391 | 0.0 | 711 |
| Msa0067710 | MtrunA17_Chr1g0163181 | 55.588 | 340 | 123 | 5 | 1 | 320 | 1 | 332 | 1.56e-124 | 371 |
| Msa0067710 | MtrunA17_Chr1g0163181 | 53.793 | 145 | 60 | 3 | 379 | 522 | 292 | 430 | 1.73e-39 | 149 |
| Msa0067710 | MtrunA17_Chr1g0163201 | 55.363 | 289 | 100 | 3 | 20 | 290 | 18 | 295 | 3.82e-100 | 307 |
| Msa0067710 | MtrunA17_Chr1g0163201 | 68.041 | 97 | 31 | 0 | 426 | 522 | 297 | 393 | 6.34e-35 | 135 |
| Msa0067710 | MtrunA17_Chr1g0163261 | 50.836 | 299 | 134 | 3 | 1 | 291 | 1 | 294 | 1.52e-94 | 290 |
| Msa0067710 | MtrunA17_Chr1g0163231 | 51.724 | 290 | 121 | 8 | 1 | 281 | 1 | 280 | 1.52e-90 | 279 |
| Msa0067710 | MtrunA17_Chr1g0171611 | 53.287 | 289 | 106 | 7 | 1 | 281 | 1 | 268 | 8.34e-90 | 277 |
| Msa0067710 | MtrunA17_Chr1g0163241 | 67.081 | 161 | 43 | 4 | 1 | 156 | 7 | 162 | 4.61e-61 | 198 |
| Msa0067710 | MtrunA17_Chr1g0163191 | 63.924 | 158 | 43 | 1 | 1 | 144 | 1 | 158 | 1.50e-60 | 196 |
| Msa0067710 | MtrunA17_Chr1g0163091 | 50.769 | 130 | 64 | 0 | 164 | 293 | 3 | 132 | 6.00e-39 | 139 |
| Msa0067710 | MtrunA17_Chr1g0162151 | 50.769 | 130 | 64 | 0 | 164 | 293 | 3 | 132 | 1.44e-35 | 132 |
| Msa0067710 | MtrunA17_Chr1g0163151 | 59.794 | 97 | 39 | 0 | 426 | 522 | 126 | 222 | 1.14e-33 | 127 |
| Msa0067710 | MtrunA17_Chr1g0163151 | 46.875 | 128 | 63 | 1 | 163 | 290 | 2 | 124 | 1.46e-32 | 124 |
| Msa0067710 | MtrunA17_Chr1g0163111 | 41.558 | 154 | 79 | 3 | 179 | 331 | 10 | 153 | 9.38e-33 | 125 |
| Msa0067710 | MtrunA17_Chr1g0163111 | 48.000 | 125 | 48 | 3 | 399 | 522 | 121 | 229 | 2.37e-26 | 107 |
| Msa0067710 | MtrunA17_Chr7g0233561 | 31.457 | 302 | 166 | 11 | 9 | 278 | 18 | 310 | 1.04e-31 | 124 |
| Msa0067710 | MtrunA17_Chr1g0163131 | 30.847 | 295 | 166 | 11 | 14 | 282 | 27 | 309 | 3.63e-31 | 122 |
| Msa0067710 | MtrunA17_Chr1g0163131 | 38.849 | 139 | 77 | 4 | 389 | 521 | 170 | 306 | 6.05e-16 | 79.0 |
| Msa0067710 | MtrunA17_Chr3g0103181 | 29.818 | 275 | 180 | 6 | 9 | 278 | 12 | 278 | 5.16e-30 | 119 |
| Msa0067710 | MtrunA17_Chr8g0390841 | 30.303 | 297 | 174 | 9 | 9 | 278 | 39 | 329 | 2.19e-29 | 121 |
| Msa0067710 | MtrunA17_Chr3g0103171 | 28.464 | 267 | 176 | 6 | 20 | 278 | 5 | 264 | 7.64e-29 | 115 |
| Msa0067710 | MtrunA17_Chr1g0163101 | 43.972 | 141 | 67 | 4 | 14 | 146 | 26 | 162 | 1.72e-28 | 111 |
| Msa0067710 | MtrunA17_Chr7g0233521 | 32.014 | 278 | 167 | 9 | 21 | 286 | 2 | 269 | 8.68e-28 | 112 |
| Msa0067710 | MtrunA17_Chr1g0163221 | 28.383 | 303 | 177 | 13 | 9 | 285 | 11 | 299 | 2.95e-26 | 110 |
| Msa0067710 | MtrunA17_Chr1g0163071 | 26.974 | 304 | 184 | 8 | 21 | 292 | 2 | 299 | 3.62e-26 | 108 |
| Msa0067710 | MtrunA17_Chr1g0162161 | 39.726 | 146 | 78 | 4 | 21 | 159 | 4 | 146 | 3.80e-26 | 104 |
| Msa0067710 | MtrunA17_Chr1g0208771 | 28.060 | 335 | 190 | 13 | 20 | 315 | 12 | 334 | 6.79e-26 | 110 |
| Msa0067710 | MtrunA17_Chr6g0476181 | 45.070 | 142 | 69 | 4 | 21 | 159 | 2 | 137 | 9.13e-26 | 103 |
| Msa0067710 | MtrunA17_Chr3g0131891 | 30.717 | 293 | 170 | 9 | 9 | 278 | 19 | 301 | 1.42e-25 | 107 |
| Msa0067710 | MtrunA17_Chr4g0067431 | 28.819 | 288 | 174 | 10 | 9 | 268 | 15 | 299 | 2.19e-25 | 106 |
| Msa0067710 | MtrunA17_Chr7g0233541 | 29.066 | 289 | 178 | 7 | 21 | 286 | 2 | 286 | 3.80e-25 | 105 |
| Msa0067710 | MtrunA17_Chr1g0163121 | 39.568 | 139 | 77 | 3 | 19 | 157 | 9 | 140 | 1.21e-24 | 99.8 |
| Msa0067710 | MtrunA17_Chr6g0476171 | 44.444 | 135 | 68 | 4 | 164 | 291 | 12 | 146 | 2.18e-24 | 102 |
| Msa0067710 | MtrunA17_Chr6g0476171 | 49.180 | 61 | 31 | 0 | 461 | 521 | 185 | 245 | 5.06e-11 | 63.2 |
| Msa0067710 | MtrunA17_Chr3g0103191 | 30.488 | 246 | 149 | 7 | 9 | 240 | 12 | 249 | 1.90e-23 | 99.4 |
| Msa0067710 | MtrunA17_Chr1g0163081 | 49.438 | 89 | 44 | 1 | 21 | 109 | 6 | 93 | 4.73e-23 | 95.1 |
| Msa0067710 | MtrunA17_Chr3g0103151 | 41.463 | 123 | 67 | 3 | 9 | 126 | 12 | 134 | 2.19e-22 | 94.0 |
| Msa0067710 | MtrunA17_Chr7g0233531 | 29.391 | 279 | 173 | 8 | 21 | 286 | 2 | 269 | 1.29e-21 | 95.1 |
| Msa0067710 | MtrunA17_Chr1g0163141 | 37.500 | 152 | 83 | 3 | 17 | 160 | 7 | 154 | 1.91e-21 | 92.0 |
| Msa0067710 | MtrunA17_Chr5g0419201 | 35.526 | 152 | 82 | 4 | 9 | 144 | 16 | 167 | 2.10e-21 | 92.0 |
| Msa0067710 | MtrunA17_Chr7g0233571 | 34.239 | 184 | 107 | 5 | 1 | 177 | 1 | 177 | 2.12e-20 | 90.1 |
| Msa0067710 | MtrunA17_Chr1g0163161 | 38.346 | 133 | 70 | 4 | 33 | 157 | 1 | 129 | 2.28e-18 | 81.6 |
| Msa0067710 | MtrunA17_Chr6g0467351 | 28.293 | 205 | 130 | 5 | 13 | 201 | 23 | 226 | 9.73e-18 | 82.4 |
| Msa0067710 | MtrunA17_Chr4g0033961 | 36.634 | 101 | 58 | 2 | 7 | 101 | 4 | 104 | 1.05e-12 | 70.1 |
| Msa0067710 | MtrunA17_Chr5g0419211 | 34.021 | 97 | 63 | 1 | 199 | 294 | 8 | 104 | 3.25e-12 | 63.2 |
| Msa0067710 | MtrunA17_Chr1g0154131 | 26.071 | 280 | 189 | 10 | 3 | 266 | 179 | 456 | 2.43e-11 | 65.9 |
| Msa0067710 | MtrunA17_Chr1g0163061 | 35.000 | 100 | 58 | 3 | 9 | 101 | 15 | 114 | 7.72e-11 | 62.8 |
| Msa0067710 | MtrunA17_Chr5g0429931 | 24.723 | 271 | 160 | 8 | 20 | 282 | 10 | 244 | 9.61e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0067710 | AT3G18990.2 | 25.225 | 333 | 184 | 9 | 7 | 277 | 4 | 333 | 1.19e-21 | 97.1 |
| Msa0067710 | AT3G18990.1 | 25.225 | 333 | 184 | 9 | 7 | 277 | 4 | 333 | 1.33e-21 | 96.7 |
Find 93 sgRNAs with CRISPR-Local
Find 282 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGTTCAACAAGAAATATTT+TGG | 0.149501 | 1_2:+32775517 | Msa0067710:CDS |
| TAAAGGTTGGATAAAATTTA+TGG | 0.171908 | 1_2:+32779768 | Msa0067710:CDS |
| TATTTCAAGGTTAAGATATT+TGG | 0.184615 | 1_2:+32775642 | Msa0067710:CDS |
| TTTGGAAATTTAAGAAATAT+TGG | 0.199105 | 1_2:-32775492 | None:intergenic |
| AAAGAAGGGATTCTCATTAT+TGG | 0.209323 | 1_2:-32776072 | None:intergenic |
| CCATGGGAAGCATGCTCTTT+TGG | 0.216932 | 1_2:-32777718 | None:intergenic |
| TTTGCAAAGTCTCTCAAATA+TGG | 0.220809 | 1_2:+32775585 | Msa0067710:CDS |
| CCTTGAAGAGCTTGCACTTT+TGG | 0.221116 | 1_2:-32777030 | None:intergenic |
| CCCTGAAGAGCATGCACTTT+TGG | 0.222036 | 1_2:-32777220 | None:intergenic |
| TCCAAAAGTGCATGCTCTTC+AGG | 0.235087 | 1_2:+32777219 | Msa0067710:CDS |
| CTTAGGGTTTGGTCCCTTGA+TGG | 0.254887 | 1_2:-32776465 | None:intergenic |
| GCATGCACCAAAGAGATTTA+TGG | 0.255225 | 1_2:+32779645 | Msa0067710:intron |
| ACACAATACATTCAAGGTTT+TGG | 0.281549 | 1_2:+32779506 | Msa0067710:CDS |
| AGAAATATGTGGAGAAATAT+TGG | 0.283749 | 1_2:+32775454 | Msa0067710:CDS |
| CCTCTTTCCATAAATCTCTT+TGG | 0.284821 | 1_2:-32779652 | None:intergenic |
| CAATATTATCTTATGAAAAT+CGG | 0.286878 | 1_2:-32775300 | None:intergenic |
| GAAGAAAGCAAAGTGGAAAT+TGG | 0.294808 | 1_2:+32779790 | Msa0067710:CDS |
| TGGAGAATAATGGTGATATT+TGG | 0.299993 | 1_2:+32775541 | Msa0067710:CDS |
| ATATTTCTCCACATATTTCT+TGG | 0.307927 | 1_2:-32775451 | None:intergenic |
| ATTTCTTGTTGAACACCATT+TGG | 0.331479 | 1_2:-32775510 | None:intergenic |
| TTGGAAATTTAAGAAATATT+GGG | 0.332062 | 1_2:-32775491 | None:intergenic |
| CCTTGCAACTTCTTAGGGTT+TGG | 0.347894 | 1_2:-32776476 | None:intergenic |
| GTTATCATTTGAGCTTCCTT+TGG | 0.355140 | 1_2:-32775774 | None:intergenic |
| TATAAAGAAGGGATCTCTTC+TGG | 0.374152 | 1_2:+32776606 | Msa0067710:CDS |
| TATTTCTCCACATATTTCTT+GGG | 0.381095 | 1_2:-32775450 | None:intergenic |
| AATTAACCCTACCGGGTGTT+TGG | 0.385019 | 1_2:-32779535 | None:intergenic |
| TATAAAGAAGGGATCTCTTA+TGG | 0.386855 | 1_2:+32776955 | Msa0067710:CDS |
| CCAAAAGTGCAAGCTCTTCA+AGG | 0.388417 | 1_2:+32777030 | Msa0067710:CDS |
| AATATTATCTTATGAAAATC+GGG | 0.396040 | 1_2:-32775299 | None:intergenic |
| GAAGCTCAAATGATAACAAA+TGG | 0.398449 | 1_2:+32775780 | Msa0067710:CDS |
| TGTCATTAAAACTTCAAAGA+AGG | 0.419675 | 1_2:-32776087 | None:intergenic |
| AAAATTGTGGAGTTGAAAAT+GGG | 0.422112 | 1_2:+32779685 | Msa0067710:CDS |
| GTGTTTAAAGTTTCCATTGT+GGG | 0.433176 | 1_2:+32779853 | Msa0067710:CDS |
| GATGAAACACAATACATTCA+AGG | 0.445828 | 1_2:+32779500 | Msa0067710:CDS |
| CCAAAAGTGCATGCTCTTCA+GGG | 0.454566 | 1_2:+32777220 | Msa0067710:CDS |
| TATTGGTGGATCATATTTCA+AGG | 0.456312 | 1_2:+32775629 | Msa0067710:CDS |
| CGTGGTTGTCAGTTCAGTAA+AGG | 0.468915 | 1_2:+32779751 | Msa0067710:CDS |
| AACTGACAACCACGAATACT+AGG | 0.474382 | 1_2:-32779742 | None:intergenic |
| ATTTATTATCCTAGTATTCG+TGG | 0.474870 | 1_2:+32779733 | Msa0067710:CDS |
| TCTTCTAATTCTATGACTAC+TGG | 0.476068 | 1_2:+32776338 | Msa0067710:CDS |
| TACTATTACTAAAGCCATCA+AGG | 0.479367 | 1_2:+32776451 | Msa0067710:CDS |
| GTCATTAAAACTTCAAAGAA+GGG | 0.479979 | 1_2:-32776086 | None:intergenic |
| TTACGCCCATGGTCATATCT+TGG | 0.485636 | 1_2:+32776115 | Msa0067710:CDS |
| GAGACACTGGAGAAACTTGT+AGG | 0.490241 | 1_2:+32776652 | Msa0067710:CDS |
| CCATGAGAAGGTTATAAAGA+AGG | 0.491612 | 1_2:+32776594 | Msa0067710:intron |
| CCATGACAAGGTTATAAAGA+AGG | 0.491612 | 1_2:+32776943 | Msa0067710:intron |
| CCATGACAAGGTTATAAAGA+AGG | 0.491612 | 1_2:+32777133 | Msa0067710:intron |
| ATATTTCTTAAATTTCCAAA+TGG | 0.500935 | 1_2:+32775495 | Msa0067710:CDS |
| AAGACGCTGGAGAAACTTGT+AGG | 0.502167 | 1_2:+32777001 | Msa0067710:CDS |
| ATAGTAATAGTGAATAAAAG+TGG | 0.509655 | 1_2:-32776434 | None:intergenic |
| CCATGACAAGGTTATAAAGA+AGG | 0.510696 | 1_2:+32777631 | Msa0067710:intron |
| CCAAAGAGATTTATGGAAAG+AGG | 0.511759 | 1_2:+32779652 | Msa0067710:CDS |
| AAGCTCAAATGATAACAAAT+GGG | 0.514121 | 1_2:+32775781 | Msa0067710:CDS |
| AAGACATTGGAGAAACTTGT+AGG | 0.516345 | 1_2:+32777191 | Msa0067710:CDS |
| AAGACATTGGAGAAACATCT+AGG | 0.517707 | 1_2:+32777689 | Msa0067710:CDS |
| TCATACTTGAACAAATTTGA+AGG | 0.519341 | 1_2:+32776248 | Msa0067710:CDS |
| CATACTTGAACAAATTTGAA+GGG | 0.523429 | 1_2:+32776249 | Msa0067710:CDS |
| GGGATTGCAAGCTTAAGAGT+TGG | 0.529065 | 1_2:+32776269 | Msa0067710:CDS |
| ATGATCATGATATTCTAAAG+AGG | 0.534079 | 1_2:+32777167 | Msa0067710:CDS |
| CATGAGAAGGTTATAAAGAA+GGG | 0.535802 | 1_2:+32776595 | Msa0067710:intron |
| ATTCTAAAGAGGAGAGACAC+TGG | 0.536518 | 1_2:+32776639 | Msa0067710:CDS |
| GTTGTCAGTTCAGTAAAGGT+TGG | 0.536590 | 1_2:+32779755 | Msa0067710:CDS |
| TGCAAGCTTAAGAGTTGGAG+AGG | 0.542791 | 1_2:+32776274 | Msa0067710:CDS |
| ATTCTAAAGAGGAAAGACAT+TGG | 0.551775 | 1_2:+32777178 | Msa0067710:CDS |
| CATGACAAGGTTATAAAGAA+GGG | 0.554767 | 1_2:+32776944 | Msa0067710:intron |
| CATGACAAGGTTATAAAGAA+GGG | 0.554767 | 1_2:+32777134 | Msa0067710:intron |
| CTAATTCTATGACTACTGGT+TGG | 0.561386 | 1_2:+32776342 | Msa0067710:CDS |
| GAGAATTCCCAAGAAATATG+TGG | 0.561715 | 1_2:+32775443 | Msa0067710:intron |
| AGAGGAGACAGCTATGAAAG+TGG | 0.577915 | 1_2:+32776292 | Msa0067710:CDS |
| TATGATCTTGAAAAGTTGCA+TGG | 0.578670 | 1_2:-32776230 | None:intergenic |
| GTGATCGTGATGTTCTAAAG+AGG | 0.587079 | 1_2:+32776977 | Msa0067710:CDS |
| ATTCTACCGTGGAAAGACAT+TGG | 0.588028 | 1_2:+32777676 | Msa0067710:CDS |
| CCAAAAGAGCATGCTTCCCA+TGG | 0.588789 | 1_2:+32777718 | Msa0067710:CDS |
| GAAATACTTGTCTCCTAGAG+CGG | 0.589908 | 1_2:+32779812 | Msa0067710:CDS |
| CCAAACCCTAAGAAGTTGCA+AGG | 0.590895 | 1_2:+32776476 | Msa0067710:CDS |
| GTGATCGTGATATTCTAAAG+AGG | 0.591830 | 1_2:+32776628 | Msa0067710:CDS |
| ATGACACAAACTTACGCCCA+TGG | 0.594951 | 1_2:+32776104 | Msa0067710:CDS |
| GTTTCTCCAATGTCTTTCCA+CGG | 0.615143 | 1_2:-32777682 | None:intergenic |
| TATGTGGAGAAATATTGGAA+AGG | 0.617787 | 1_2:+32775459 | Msa0067710:CDS |
| ACTATTACTAAAGCCATCAA+GGG | 0.618938 | 1_2:+32776452 | Msa0067710:CDS |
| ATTTATGGAAGAAAGCAAAG+TGG | 0.622753 | 1_2:+32779783 | Msa0067710:CDS |
| AAATTGTGGAGTTGAAAATG+GGG | 0.628496 | 1_2:+32779686 | Msa0067710:CDS |
| TGATGAGAGTGAAATACCAA+AGG | 0.631208 | 1_2:+32775758 | Msa0067710:CDS |
| AATTGTGGAGTTGAAAATGG+GGG | 0.632867 | 1_2:+32779687 | Msa0067710:CDS |
| GTTCTAAAGAGGAAAGACGC+TGG | 0.637277 | 1_2:+32776988 | Msa0067710:CDS |
| TTTGGTAAATTCCAAACACC+CGG | 0.637463 | 1_2:+32779524 | Msa0067710:CDS |
| ATTGTGGAGTTGAAAATGGG+GGG | 0.654265 | 1_2:+32779688 | Msa0067710:CDS |
| TGTGTTTAAAGTTTCCATTG+TGG | 0.655197 | 1_2:+32779852 | Msa0067710:CDS |
| ACTTACCAAGATATGACCAT+GGG | 0.667874 | 1_2:-32776120 | None:intergenic |
| ATATTATCTTATGAAAATCG+GGG | 0.668785 | 1_2:-32775298 | None:intergenic |
| TATAAGGTTCTATCCCACAA+TGG | 0.669677 | 1_2:-32779866 | None:intergenic |
| TACTTACCAAGATATGACCA+TGG | 0.678715 | 1_2:-32776121 | None:intergenic |
| GTGATAAGCATATTCTACCG+TGG | 0.706198 | 1_2:+32777665 | Msa0067710:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATAATATATTTTTATA+GGG | - | chr1_2:32778832-32778851 | None:intergenic | 0.0% |
| !!! | TTTTTATAATATATTTTTAT+AGG | - | chr1_2:32778833-32778852 | None:intergenic | 0.0% |
| !! | TAAAAATATATTATAAAAAT+AGG | + | chr1_2:32778834-32778853 | Msa0067710:intron | 0.0% |
| !!! | TTAATTTTTAAATATATTGG+TGG | + | chr1_2:32775615-32775634 | Msa0067710:CDS | 10.0% |
| !! | TTAACTAAATAAAGAAATTA+AGG | - | chr1_2:32776739-32776758 | None:intergenic | 10.0% |
| !! | TTAACTAAATAAAGAAATTA+AGG | - | chr1_2:32776739-32776758 | None:intergenic | 10.0% |
| !!! | AATTAAAATTGTTTTTAATC+TGG | + | chr1_2:32777825-32777844 | Msa0067710:intron | 10.0% |
| !!! | CTATTTAAAATTAATGTTTA+AGG | - | chr1_2:32777958-32777977 | None:intergenic | 10.0% |
| !! | TAAAATTTCTTTCAAATTTA+TGG | - | chr1_2:32777981-32778000 | None:intergenic | 10.0% |
| !! | ATAAAAATAATAATCTAAAG+AGG | + | chr1_2:32778390-32778409 | Msa0067710:intron | 10.0% |
| !!! | GAATTATTAAATATTTTGTA+AGG | - | chr1_2:32778687-32778706 | None:intergenic | 10.0% |
| !! | ACAAAATATTTAATAATTCA+AGG | + | chr1_2:32778688-32778707 | Msa0067710:intron | 10.0% |
| !!! | AAAATTAGAGATTTTTAAAT+AGG | - | chr1_2:32778801-32778820 | None:intergenic | 10.0% |
| !!! | TAAAAATCTCTAATTTTTTT+TGG | + | chr1_2:32778804-32778823 | Msa0067710:intron | 10.0% |
| !!! | AAAAATCTCTAATTTTTTTT+GGG | + | chr1_2:32778805-32778824 | Msa0067710:intron | 10.0% |
| !!! | TAAAATCTCTAATTTTTTTT+TGG | + | chr1_2:32778863-32778882 | Msa0067710:intron | 10.0% |
| !!! | AAAATCTCTAATTTTTTTTT+GGG | + | chr1_2:32778864-32778883 | Msa0067710:intron | 10.0% |
| !! | ATAAAAAATATATAACCATT+TGG | + | chr1_2:32778936-32778955 | Msa0067710:intron | 10.0% |
| !!! | TTCACAAAAAATTTAAATTT+TGG | + | chr1_2:32779030-32779049 | Msa0067710:intron | 10.0% |
| !!! | TCACAAAAAATTTAAATTTT+GGG | + | chr1_2:32779031-32779050 | Msa0067710:intron | 10.0% |
| !! | ATATATAAATACTAATTAAG+TGG | + | chr1_2:32779210-32779229 | Msa0067710:intron | 10.0% |
| !! | CATATAAAAAAAATATGTTT+CGG | + | chr1_2:32779237-32779256 | Msa0067710:intron | 10.0% |
| !! | ATATAAAAAAAATATGTTTC+GGG | + | chr1_2:32779238-32779257 | Msa0067710:intron | 10.0% |
| !!! | ATAATGTATAAATGTTATTT+TGG | + | chr1_2:32779610-32779629 | Msa0067710:intron | 10.0% |
| !! | AATATTATCTTATGAAAATC+GGG | - | chr1_2:32775302-32775321 | None:intergenic | 15.0% |
| !! | CAATATTATCTTATGAAAAT+CGG | - | chr1_2:32775303-32775322 | None:intergenic | 15.0% |
| !! | AAAGAAATTAACGTTTATAA+AGG | - | chr1_2:32775405-32775424 | None:intergenic | 15.0% |
| !! | TTGGAAATTTAAGAAATATT+GGG | - | chr1_2:32775494-32775513 | None:intergenic | 15.0% |
| !! | TTTGGAAATTTAAGAAATAT+TGG | - | chr1_2:32775495-32775514 | None:intergenic | 15.0% |
| !! | ATATTTCTTAAATTTCCAAA+TGG | + | chr1_2:32775495-32775514 | Msa0067710:CDS | 15.0% |
| !!! | ATATTTGGTTTCAAAAAAAT+TGG | + | chr1_2:32775556-32775575 | Msa0067710:CDS | 15.0% |
| !!! | TATTTGGTTTCAAAAAAATT+GGG | + | chr1_2:32775557-32775576 | Msa0067710:CDS | 15.0% |
| !!! | ATAAGTAAATTCATTTTCAA+AGG | - | chr1_2:32775895-32775914 | None:intergenic | 15.0% |
| !! | TTCACTAAATAAAGAAATTA+AGG | - | chr1_2:32777087-32777106 | None:intergenic | 15.0% |
| !!! | TTGATAATAATATTCTAAAG+AGG | + | chr1_2:32777358-32777377 | Msa0067710:intron | 15.0% |
| !! | AAAACGTATAAATTATTGAT+AGG | - | chr1_2:32777859-32777878 | None:intergenic | 15.0% |
| !!! | TTAAGGATACATTTTTTTTA+GGG | - | chr1_2:32777915-32777934 | None:intergenic | 15.0% |
| !!! | TTTAAGGATACATTTTTTTT+AGG | - | chr1_2:32777916-32777935 | None:intergenic | 15.0% |
| !!! | TTAAGGATACATTTTTTTTA+GGG | - | chr1_2:32777915-32777934 | None:intergenic | 15.0% |
| !!! | TTTAAGGATACATTTTTTTT+AGG | - | chr1_2:32777916-32777935 | None:intergenic | 15.0% |
| !!! | AAACATTTTCAAAGAAATTA+AGG | - | chr1_2:32778192-32778211 | None:intergenic | 15.0% |
| !! | CAAAATATTAAATAGTTCAA+GGG | + | chr1_2:32778242-32778261 | Msa0067710:intron | 15.0% |
| !!! | AGAAAAATCCATTTTTATAT+TGG | + | chr1_2:32778585-32778604 | Msa0067710:intron | 15.0% |
| !!! | GAAAAATCCATTTTTATATT+GGG | + | chr1_2:32778586-32778605 | Msa0067710:intron | 15.0% |
| !!! | ACTTTTAAATAATTTGTGAA+TGG | + | chr1_2:32778660-32778679 | Msa0067710:intron | 15.0% |
| !!! | CTTTTAAATAATTTGTGAAT+GGG | + | chr1_2:32778661-32778680 | Msa0067710:intron | 15.0% |
| !!! | CATATCAATAGTTTTTATAT+AGG | - | chr1_2:32778741-32778760 | None:intergenic | 15.0% |
| !! | AAAAACTATTGATATGTTTA+AGG | + | chr1_2:32778745-32778764 | Msa0067710:intron | 15.0% |
| !! | AAAACTATTGATATGTTTAA+GGG | + | chr1_2:32778746-32778765 | Msa0067710:intron | 15.0% |
| !! | ATATTATCTTATGAAAATCG+GGG | - | chr1_2:32775301-32775320 | None:intergenic | 20.0% |
| !!! | TGTTCAACAAGAAATATTTT+GGG | + | chr1_2:32775518-32775537 | Msa0067710:CDS | 20.0% |
| !! | TATTTCAAGGTTAAGATATT+TGG | + | chr1_2:32775642-32775661 | Msa0067710:CDS | 20.0% |
| !!! | TTCATCAACAGATTTTATAT+TGG | - | chr1_2:32775694-32775713 | None:intergenic | 20.0% |
| !! | AAGGAAACATGATATTAAAA+AGG | - | chr1_2:32775876-32775895 | None:intergenic | 20.0% |
| !! | TCTAAAAATGTCTACTAATT+TGG | + | chr1_2:32776148-32776167 | Msa0067710:intron | 20.0% |
| !! | CACTAATCTATAATAAAATG+TGG | + | chr1_2:32776184-32776203 | Msa0067710:intron | 20.0% |
| !!! | CAACTTCTAAGTTATATTTT+TGG | - | chr1_2:32776379-32776398 | None:intergenic | 20.0% |
| !! | CAAAAATATAACTTAGAAGT+TGG | + | chr1_2:32776377-32776396 | Msa0067710:CDS | 20.0% |
| !! | ATAGTAATAGTGAATAAAAG+TGG | - | chr1_2:32776437-32776456 | None:intergenic | 20.0% |
| !! | TAAATTATTGATAGGTTTAG+AGG | - | chr1_2:32777851-32777870 | None:intergenic | 20.0% |
| !!! | CATTTTTTTTAGGGAATTTA+AGG | - | chr1_2:32777906-32777925 | None:intergenic | 20.0% |
| !! | TTGAACCTTAGAAAATATTT+AGG | + | chr1_2:32778040-32778059 | Msa0067710:intron | 20.0% |
| !!! | GAATTCCTAAATATTTTCTA+AGG | - | chr1_2:32778048-32778067 | None:intergenic | 20.0% |
| !!! | CACATCAATAATTTGTATAT+AGG | - | chr1_2:32778096-32778115 | None:intergenic | 20.0% |
| !! | ACAAATTATTGATGTGTTTA+AGG | + | chr1_2:32778100-32778119 | Msa0067710:intron | 20.0% |
| !! | GCAAAATATTAAATAGTTCA+AGG | + | chr1_2:32778241-32778260 | Msa0067710:intron | 20.0% |
| !!! | CATCTTTTTGAATTGTTATT+TGG | + | chr1_2:32778303-32778322 | Msa0067710:intron | 20.0% |
| !!! | TTTAGATTTTACTATTGTGA+AGG | + | chr1_2:32778493-32778512 | Msa0067710:intron | 20.0% |
| !! | TTTCTACTATATAAGTTTAG+AGG | - | chr1_2:32778570-32778589 | None:intergenic | 20.0% |
| !!! | TCATTTTCCCAATATAAAAA+TGG | - | chr1_2:32778596-32778615 | None:intergenic | 20.0% |
| !!! | TTTTTATATTGGGAAAATGA+AGG | + | chr1_2:32778596-32778615 | Msa0067710:intron | 20.0% |
| !!! | TCAGTAAATTAATTTTTCGT+TGG | + | chr1_2:32778713-32778732 | Msa0067710:intron | 20.0% |
| !!! | GAAGATTTAGAGATTTTTAA+AGG | - | chr1_2:32778892-32778911 | None:intergenic | 20.0% |
| !! | AAAATATATAACCATTTGGT+TGG | + | chr1_2:32778940-32778959 | Msa0067710:intron | 20.0% |
| !! | AATCCTTAAAAATTTGAACA+GGG | - | chr1_2:32779012-32779031 | None:intergenic | 20.0% |
| !!! | TTCTTTTTAGTGTCTTATTT+AGG | - | chr1_2:32779066-32779085 | None:intergenic | 20.0% |
| !! | AGGGTTAATTACATAAAATA+TGG | + | chr1_2:32779548-32779567 | Msa0067710:intron | 20.0% |
| !! | TAAAGGTTGGATAAAATTTA+TGG | + | chr1_2:32779768-32779787 | Msa0067710:CDS | 20.0% |
| ! | TATTTCTCCACATATTTCTT+GGG | - | chr1_2:32775453-32775472 | None:intergenic | 25.0% |
| ! | ATATTTCTCCACATATTTCT+TGG | - | chr1_2:32775454-32775473 | None:intergenic | 25.0% |
| ! | AGAAATATGTGGAGAAATAT+TGG | + | chr1_2:32775454-32775473 | Msa0067710:CDS | 25.0% |
| !! | GTGTTCAACAAGAAATATTT+TGG | + | chr1_2:32775517-32775536 | Msa0067710:CDS | 25.0% |
| ! | AAGCTCAAATGATAACAAAT+GGG | + | chr1_2:32775781-32775800 | Msa0067710:CDS | 25.0% |
| !! | TAACAAATGAAATCTAAAGC+AGG | + | chr1_2:32775981-32776000 | Msa0067710:intron | 25.0% |
| ! | GTCATTAAAACTTCAAAGAA+GGG | - | chr1_2:32776089-32776108 | None:intergenic | 25.0% |
| ! | TGTCATTAAAACTTCAAAGA+AGG | - | chr1_2:32776090-32776109 | None:intergenic | 25.0% |
| ! | TCATACTTGAACAAATTTGA+AGG | + | chr1_2:32776248-32776267 | Msa0067710:CDS | 25.0% |
| ! | CATACTTGAACAAATTTGAA+GGG | + | chr1_2:32776249-32776268 | Msa0067710:CDS | 25.0% |
| ! | GTTATGGATCAAAGAAATTA+AGG | - | chr1_2:32776772-32776791 | None:intergenic | 25.0% |
| ! | AATTTCTTTGATCCATAACA+AGG | + | chr1_2:32776773-32776792 | Msa0067710:intron | 25.0% |
| ! | TCTTCTTTATAACCTTGTTA+TGG | - | chr1_2:32776788-32776807 | None:intergenic | 25.0% |
| ! | GTCATGGATCAAAAAAATTA+AGG | - | chr1_2:32776930-32776949 | None:intergenic | 25.0% |
| !!! | AATTTTTTTGATCCATGACA+AGG | + | chr1_2:32776931-32776950 | Msa0067710:intron | 25.0% |
| !! | ATGATCATGATATTCTAAAG+AGG | + | chr1_2:32777167-32777186 | Msa0067710:CDS | 25.0% |
| ! | ACTTCTTTATAACCTTGTAA+GGG | - | chr1_2:32777327-32777346 | None:intergenic | 25.0% |
| ! | AACTTCTTTATAACCTTGTA+AGG | - | chr1_2:32777328-32777347 | None:intergenic | 25.0% |
| ! | AAGTTTGAAGATTATACCAT+GGG | - | chr1_2:32777737-32777756 | None:intergenic | 25.0% |
| ! | AAAGTTTGAAGATTATACCA+TGG | - | chr1_2:32777738-32777757 | None:intergenic | 25.0% |
| !!! | CATTTTTTTTAGGGAGTTTA+AGG | - | chr1_2:32777932-32777951 | None:intergenic | 25.0% |
| ! | CATAAATAATAACTGAACAC+TGG | - | chr1_2:32778070-32778089 | None:intergenic | 25.0% |
| ! | CAGTGTTCAGTTATTATTTA+TGG | + | chr1_2:32778068-32778087 | Msa0067710:intron | 25.0% |
| ! | AATCTAAAGAGGAAATTCAT+TGG | + | chr1_2:32778401-32778420 | Msa0067710:intron | 25.0% |
| ! | GAATCCTTAAAAATTTGAAC+AGG | - | chr1_2:32779013-32779032 | None:intergenic | 25.0% |
| !!! | AGTGTCTTATTTAGGTTTTT+GGG | - | chr1_2:32779058-32779077 | None:intergenic | 25.0% |
| !!! | TAGTGTCTTATTTAGGTTTT+TGG | - | chr1_2:32779059-32779078 | None:intergenic | 25.0% |
| ! | ATTAACAAAAATCACCTTAG+TGG | + | chr1_2:32779090-32779109 | Msa0067710:intron | 25.0% |
| ! | TTAACAAAAATCACCTTAGT+GGG | + | chr1_2:32779091-32779110 | Msa0067710:intron | 25.0% |
| !!! | GTTATTTTTGGTTATGTTTG+TGG | - | chr1_2:32779131-32779150 | None:intergenic | 25.0% |
| ! | AACCAAAAATAACCAAAAGT+AGG | + | chr1_2:32779138-32779157 | Msa0067710:intron | 25.0% |
| !! | ATTTTGTGTGTAGAATCAAA+GGG | + | chr1_2:32779468-32779487 | Msa0067710:intron | 25.0% |
| !! | TTTTATGTAATTAACCCTAC+CGG | - | chr1_2:32779546-32779565 | None:intergenic | 25.0% |
| ! | AAAAATTGTGGAGTTGAAAA+TGG | + | chr1_2:32779684-32779703 | Msa0067710:CDS | 25.0% |
| ! | AAAATTGTGGAGTTGAAAAT+GGG | + | chr1_2:32779685-32779704 | Msa0067710:CDS | 25.0% |
| ! | ATTTATTATCCTAGTATTCG+TGG | + | chr1_2:32779733-32779752 | Msa0067710:CDS | 25.0% |
| TATGTGGAGAAATATTGGAA+AGG | + | chr1_2:32775459-32775478 | Msa0067710:CDS | 30.0% | |
| ATTTCTTGTTGAACACCATT+TGG | - | chr1_2:32775513-32775532 | None:intergenic | 30.0% | |
| !! | TCAACAAGAAATATTTTGGG+TGG | + | chr1_2:32775521-32775540 | Msa0067710:CDS | 30.0% |
| !! | ATATTTTGGGTGGAGAATAA+TGG | + | chr1_2:32775531-32775550 | Msa0067710:CDS | 30.0% |
| TGGAGAATAATGGTGATATT+TGG | + | chr1_2:32775541-32775560 | Msa0067710:CDS | 30.0% | |
| TTTGCAAAGTCTCTCAAATA+TGG | + | chr1_2:32775585-32775604 | Msa0067710:CDS | 30.0% | |
| ! | TATTGGTGGATCATATTTCA+AGG | + | chr1_2:32775629-32775648 | Msa0067710:CDS | 30.0% |
| GAAGCTCAAATGATAACAAA+TGG | + | chr1_2:32775780-32775799 | Msa0067710:CDS | 30.0% | |
| ! | AAATGAAATCTAAAGCAGGT+AGG | + | chr1_2:32775985-32776004 | Msa0067710:intron | 30.0% |
| AAAGAAGGGATTCTCATTAT+TGG | - | chr1_2:32776075-32776094 | None:intergenic | 30.0% | |
| TGTGGTTCATGAATTGAAAT+AGG | + | chr1_2:32776202-32776221 | Msa0067710:intron | 30.0% | |
| TATGATCTTGAAAAGTTGCA+TGG | - | chr1_2:32776233-32776252 | None:intergenic | 30.0% | |
| TCTTCTAATTCTATGACTAC+TGG | + | chr1_2:32776338-32776357 | Msa0067710:CDS | 30.0% | |
| TACTATTACTAAAGCCATCA+AGG | + | chr1_2:32776451-32776470 | Msa0067710:CDS | 30.0% | |
| ACTATTACTAAAGCCATCAA+GGG | + | chr1_2:32776452-32776471 | Msa0067710:CDS | 30.0% | |
| AAAAACCTTGCAACTTCTTA+GGG | - | chr1_2:32776484-32776503 | None:intergenic | 30.0% | |
| AAAAAACCTTGCAACTTCTT+AGG | - | chr1_2:32776485-32776504 | None:intergenic | 30.0% | |
| TCTCATGGATCAAAGAAAAT+AGG | - | chr1_2:32776582-32776601 | None:intergenic | 30.0% | |
| ! | ATTTTCTTTGATCCATGAGA+AGG | + | chr1_2:32776582-32776601 | Msa0067710:intron | 30.0% |
| CATGAGAAGGTTATAAAGAA+GGG | + | chr1_2:32776595-32776614 | Msa0067710:intron | 30.0% | |
| CATGACAAGGTTATAAAGAA+GGG | + | chr1_2:32776944-32776963 | Msa0067710:intron | 30.0% | |
| TATAAAGAAGGGATCTCTTA+TGG | + | chr1_2:32776955-32776974 | Msa0067710:CDS | 30.0% | |
| GTCATGGATCAAAGAAATTA+AGG | - | chr1_2:32777120-32777139 | None:intergenic | 30.0% | |
| AATTTCTTTGATCCATGACA+AGG | + | chr1_2:32777121-32777140 | Msa0067710:intron | 30.0% | |
| CATGACAAGGTTATAAAGAA+GGG | + | chr1_2:32776944-32776963 | Msa0067710:intron | 30.0% | |
| ! | ATTCTAAAGAGGAAAGACAT+TGG | + | chr1_2:32777178-32777197 | Msa0067710:CDS | 30.0% |
| GTCATGGATCAAAGAAATTA+AGG | - | chr1_2:32777120-32777139 | None:intergenic | 30.0% | |
| AATTTCTTTGATCCATGACA+AGG | + | chr1_2:32777121-32777140 | Msa0067710:intron | 30.0% | |
| CTTTCTTTATAACCTTGACA+TGG | - | chr1_2:32778359-32778378 | None:intergenic | 30.0% | |
| CATGTCAAGGTTATAAAGAA+AGG | + | chr1_2:32778357-32778376 | Msa0067710:intron | 30.0% | |
| AATTCATTGGAGAATCTTGT+AGG | + | chr1_2:32778414-32778433 | Msa0067710:intron | 30.0% | |
| !!! | GTGTCTTATTTAGGTTTTTG+GGG | - | chr1_2:32779057-32779076 | None:intergenic | 30.0% |
| ! | TCTCAAGTGTCAATTTTTGT+AGG | + | chr1_2:32779346-32779365 | Msa0067710:intron | 30.0% |
| ! | TCTCAAGTGTCAATTTTTGT+AGG | + | chr1_2:32779346-32779365 | Msa0067710:intron | 30.0% |
| ! | CATTTTGTGTGTAGAATCAA+AGG | + | chr1_2:32779467-32779486 | Msa0067710:intron | 30.0% |
| GATGAAACACAATACATTCA+AGG | + | chr1_2:32779500-32779519 | Msa0067710:CDS | 30.0% | |
| ! | ACACAATACATTCAAGGTTT+TGG | + | chr1_2:32779506-32779525 | Msa0067710:CDS | 30.0% |
| TTTATGTAATTAACCCTACC+GGG | - | chr1_2:32779545-32779564 | None:intergenic | 30.0% | |
| AAATTGTGGAGTTGAAAATG+GGG | + | chr1_2:32779686-32779705 | Msa0067710:CDS | 30.0% | |
| ATTTATGGAAGAAAGCAAAG+TGG | + | chr1_2:32779783-32779802 | Msa0067710:CDS | 30.0% | |
| ! | TGTGTTTAAAGTTTCCATTG+TGG | + | chr1_2:32779852-32779871 | Msa0067710:CDS | 30.0% |
| ! | GTGTTTAAAGTTTCCATTGT+GGG | + | chr1_2:32779853-32779872 | Msa0067710:CDS | 30.0% |
| GAGAATTCCCAAGAAATATG+TGG | + | chr1_2:32775443-32775462 | Msa0067710:intron | 35.0% | |
| TGATGAGAGTGAAATACCAA+AGG | + | chr1_2:32775758-32775777 | Msa0067710:CDS | 35.0% | |
| GTTATCATTTGAGCTTCCTT+TGG | - | chr1_2:32775777-32775796 | None:intergenic | 35.0% | |
| ACTCTTAAGCAAAAATTCCC+AGG | + | chr1_2:32775831-32775850 | Msa0067710:CDS | 35.0% | |
| ATCAAATGAAGTTCTCACCT+GGG | - | chr1_2:32775851-32775870 | None:intergenic | 35.0% | |
| AATCAAATGAAGTTCTCACC+TGG | - | chr1_2:32775852-32775871 | None:intergenic | 35.0% | |
| ACTTACCAAGATATGACCAT+GGG | - | chr1_2:32776123-32776142 | None:intergenic | 35.0% | |
| TACTTACCAAGATATGACCA+TGG | - | chr1_2:32776124-32776143 | None:intergenic | 35.0% | |
| CTAATTCTATGACTACTGGT+TGG | + | chr1_2:32776342-32776361 | Msa0067710:CDS | 35.0% | |
| CCTTCTTTATAACCTTCTCA+TGG | - | chr1_2:32776597-32776616 | None:intergenic | 35.0% | |
| CCATGAGAAGGTTATAAAGA+AGG | + | chr1_2:32776594-32776613 | Msa0067710:intron | 35.0% | |
| TATAAAGAAGGGATCTCTTC+TGG | + | chr1_2:32776606-32776625 | Msa0067710:CDS | 35.0% | |
| ! | GTGATCGTGATATTCTAAAG+AGG | + | chr1_2:32776628-32776647 | Msa0067710:CDS | 35.0% |
| !! | AAGTGCATGCATTTTTGGAA+GGG | - | chr1_2:32776679-32776698 | None:intergenic | 35.0% |
| CCTTCTTTATAACCTTGTCA+TGG | - | chr1_2:32776946-32776965 | None:intergenic | 35.0% | |
| CCATGACAAGGTTATAAAGA+AGG | + | chr1_2:32776943-32776962 | Msa0067710:intron | 35.0% | |
| CCTTCTTTATAACCTTGTCA+TGG | - | chr1_2:32776946-32776965 | None:intergenic | 35.0% | |
| CCATGACAAGGTTATAAAGA+AGG | + | chr1_2:32776943-32776962 | Msa0067710:intron | 35.0% | |
| AAGACATTGGAGAAACTTGT+AGG | + | chr1_2:32777191-32777210 | Msa0067710:CDS | 35.0% | |
| GTAAGGGATCAAAGAAGTTA+AGG | - | chr1_2:32777311-32777330 | None:intergenic | 35.0% | |
| AACTTCTTTGATCCCTTACA+AGG | + | chr1_2:32777312-32777331 | Msa0067710:intron | 35.0% | |
| AAGAAGTTAGAAGAATACCC+TGG | - | chr1_2:32777431-32777450 | None:intergenic | 35.0% | |
| CCTTCTTTATAACCTTGTCA+TGG | - | chr1_2:32776946-32776965 | None:intergenic | 35.0% | |
| CCATGACAAGGTTATAAAGA+AGG | + | chr1_2:32776943-32776962 | Msa0067710:intron | 35.0% | |
| AAGACATTGGAGAAACATCT+AGG | + | chr1_2:32777689-32777708 | Msa0067710:CDS | 35.0% | |
| GACATGGATCAAAGAAATCA+AGG | - | chr1_2:32778343-32778362 | None:intergenic | 35.0% | |
| GATTTCTTTGATCCATGTCA+AGG | + | chr1_2:32778344-32778363 | Msa0067710:intron | 35.0% | |
| !! | GGCCAACAAATTTGTTAAGA+CGG | - | chr1_2:32778991-32779010 | None:intergenic | 35.0% |
| ! | TGGCCCTGTTCAAATTTTTA+AGG | + | chr1_2:32779006-32779025 | Msa0067710:intron | 35.0% |
| TTGGTTATGTTTGTGGTTGT+GGG | - | chr1_2:32779124-32779143 | None:intergenic | 35.0% | |
| TTTGGTTATGTTTGTGGTTG+TGG | - | chr1_2:32779125-32779144 | None:intergenic | 35.0% | |
| !! | CGCCTACTTTTGGTTATTTT+TGG | - | chr1_2:32779143-32779162 | None:intergenic | 35.0% |
| AATAAAACACAGAGCTTCAG+TGG | - | chr1_2:32779168-32779187 | None:intergenic | 35.0% | |
| TTTGGTAAATTCCAAACACC+CGG | + | chr1_2:32779524-32779543 | Msa0067710:CDS | 35.0% | |
| CCTCTTTCCATAAATCTCTT+TGG | - | chr1_2:32779655-32779674 | None:intergenic | 35.0% | |
| CCAAAGAGATTTATGGAAAG+AGG | + | chr1_2:32779652-32779671 | Msa0067710:CDS | 35.0% | |
| AGGATGTCGTGAAAAAATTG+TGG | + | chr1_2:32779672-32779691 | Msa0067710:CDS | 35.0% | |
| AATTGTGGAGTTGAAAATGG+GGG | + | chr1_2:32779687-32779706 | Msa0067710:CDS | 35.0% | |
| GAAGAAAGCAAAGTGGAAAT+TGG | + | chr1_2:32779790-32779809 | Msa0067710:CDS | 35.0% | |
| ! | ATTCTAAAGAGGAGAGACAC+TGG | + | chr1_2:32776639-32776658 | Msa0067710:CDS | 40.0% |
| !! | GAAGTGCATGCATTTTTGGA+AGG | - | chr1_2:32776680-32776699 | None:intergenic | 40.0% |
| TCCAAAAATGCATGCACTTC+AGG | + | chr1_2:32776680-32776699 | Msa0067710:CDS | 40.0% | |
| CCAAAAATGCATGCACTTCA+GGG | + | chr1_2:32776681-32776700 | Msa0067710:CDS | 40.0% | |
| ! | GCGATCGTGATATTCTAAAG+TGG | + | chr1_2:32776819-32776838 | Msa0067710:intron | 40.0% |
| AAGACACTCGAGAAACTTGT+AGG | + | chr1_2:32776843-32776862 | Msa0067710:intron | 40.0% | |
| !! | AAGAGCATGCACTTTTGGAA+GGG | - | chr1_2:32776870-32776889 | None:intergenic | 40.0% |
| !! | GTGATCGTGATGTTCTAAAG+AGG | + | chr1_2:32776977-32776996 | Msa0067710:CDS | 40.0% |
| !! | AAGAGCTTGCACTTTTGGAA+GGG | - | chr1_2:32777028-32777047 | None:intergenic | 40.0% |
| !! | AAGAGCATGCACTTTTGGAA+GGG | - | chr1_2:32776870-32776889 | None:intergenic | 40.0% |
| ! | ATTCTAAAGAGGAGAGACAC+TGG | + | chr1_2:32776639-32776658 | Msa0067710:CDS | 40.0% |
| GAGACACTGGAGAAATTTGT+CGG | + | chr1_2:32777382-32777401 | Msa0067710:intron | 40.0% | |
| GTGATAAGCATATTCTACCG+TGG | + | chr1_2:32777665-32777684 | Msa0067710:CDS | 40.0% | |
| ATTCTACCGTGGAAAGACAT+TGG | + | chr1_2:32777676-32777695 | Msa0067710:CDS | 40.0% | |
| GTTTCTCCAATGTCTTTCCA+CGG | - | chr1_2:32777685-32777704 | None:intergenic | 40.0% | |
| !!! | GTAGATCATGCAGTTTTGGA+CGG | - | chr1_2:32778442-32778461 | None:intergenic | 40.0% |
| ! | CTCTGTAGATCATGCAGTTT+TGG | - | chr1_2:32778446-32778465 | None:intergenic | 40.0% |
| AGACTGTCAAACCAACCAAA+TGG | - | chr1_2:32778954-32778973 | None:intergenic | 40.0% | |
| !! | TTTGGTTGGTTTGACAGTCT+TGG | + | chr1_2:32778954-32778973 | Msa0067710:intron | 40.0% |
| GGCCGTCTTAACAAATTTGT+TGG | + | chr1_2:32778986-32779005 | Msa0067710:intron | 40.0% | |
| AACTTTATGTCTCAAGCCCA+GGG | - | chr1_2:32779320-32779339 | None:intergenic | 40.0% | |
| AAACTTTATGTCTCAAGCCC+AGG | - | chr1_2:32779321-32779340 | None:intergenic | 40.0% | |
| TAAATTCCAAACACCCGGTA+GGG | + | chr1_2:32779529-32779548 | Msa0067710:intron | 40.0% | |
| GCATGCACCAAAGAGATTTA+TGG | + | chr1_2:32779645-32779664 | Msa0067710:intron | 40.0% | |
| ATTGTGGAGTTGAAAATGGG+GGG | + | chr1_2:32779688-32779707 | Msa0067710:CDS | 40.0% | |
| AACTGACAACCACGAATACT+AGG | - | chr1_2:32779745-32779764 | None:intergenic | 40.0% | |
| GTTGTCAGTTCAGTAAAGGT+TGG | + | chr1_2:32779755-32779774 | Msa0067710:CDS | 40.0% | |
| GAAATACTTGTCTCCTAGAG+CGG | + | chr1_2:32779812-32779831 | Msa0067710:CDS | 40.0% | |
| ! | TTTTCTCATCAATCCGCTCT+AGG | - | chr1_2:32779828-32779847 | None:intergenic | 40.0% |
| ATGACACAAACTTACGCCCA+TGG | + | chr1_2:32776104-32776123 | Msa0067710:CDS | 45.0% | |
| TTACGCCCATGGTCATATCT+TGG | + | chr1_2:32776115-32776134 | Msa0067710:CDS | 45.0% | |
| GGGATTGCAAGCTTAAGAGT+TGG | + | chr1_2:32776269-32776288 | Msa0067710:CDS | 45.0% | |
| TGCAAGCTTAAGAGTTGGAG+AGG | + | chr1_2:32776274-32776293 | Msa0067710:CDS | 45.0% | |
| AGAGGAGACAGCTATGAAAG+TGG | + | chr1_2:32776292-32776311 | Msa0067710:CDS | 45.0% | |
| CCTTGCAACTTCTTAGGGTT+TGG | - | chr1_2:32776479-32776498 | None:intergenic | 45.0% | |
| CCAAACCCTAAGAAGTTGCA+AGG | + | chr1_2:32776476-32776495 | Msa0067710:CDS | 45.0% | |
| GAGACACTGGAGAAACTTGT+AGG | + | chr1_2:32776652-32776671 | Msa0067710:CDS | 45.0% | |
| ! | CCCTGAAGTGCATGCATTTT+TGG | - | chr1_2:32776684-32776703 | None:intergenic | 45.0% |
| !! | GAAGAGCATGCACTTTTGGA+AGG | - | chr1_2:32776871-32776890 | None:intergenic | 45.0% |
| ! | TCCAAAAGTGCATGCTCTTC+AGG | + | chr1_2:32776871-32776890 | Msa0067710:intron | 45.0% |
| ! | CCAAAAGTGCATGCTCTTCA+GGG | + | chr1_2:32776872-32776891 | Msa0067710:intron | 45.0% |
| !! | GTTCTAAAGAGGAAAGACGC+TGG | + | chr1_2:32776988-32777007 | Msa0067710:CDS | 45.0% |
| AAGACGCTGGAGAAACTTGT+AGG | + | chr1_2:32777001-32777020 | Msa0067710:CDS | 45.0% | |
| ! | GAAGAGCTTGCACTTTTGGA+AGG | - | chr1_2:32777029-32777048 | None:intergenic | 45.0% |
| ! | CCTTGAAGAGCTTGCACTTT+TGG | - | chr1_2:32777033-32777052 | None:intergenic | 45.0% |
| ! | CCAAAAGTGCAAGCTCTTCA+AGG | + | chr1_2:32777030-32777049 | Msa0067710:CDS | 45.0% |
| !! | GAAGAGCATGCACTTTTGGA+AGG | - | chr1_2:32776871-32776890 | None:intergenic | 45.0% |
| ! | TCCAAAAGTGCATGCTCTTC+AGG | + | chr1_2:32776871-32776890 | Msa0067710:intron | 45.0% |
| ! | CCAAAAGTGCATGCTCTTCA+GGG | + | chr1_2:32776872-32776891 | Msa0067710:intron | 45.0% |
| GTAAATTCCAAACACCCGGT+AGG | + | chr1_2:32779528-32779547 | Msa0067710:intron | 45.0% | |
| AATTAACCCTACCGGGTGTT+TGG | - | chr1_2:32779538-32779557 | None:intergenic | 45.0% | |
| TGAAAATGGGGGGACAATCA+TGG | + | chr1_2:32779698-32779717 | Msa0067710:CDS | 45.0% | |
| CGTGGTTGTCAGTTCAGTAA+AGG | + | chr1_2:32779751-32779770 | Msa0067710:CDS | 45.0% | |
| !!! | CTTTTAATTTTTAAATATAT+TGG | + | chr1_2:32775612-32775631 | Msa0067710:CDS | 5.0% |
| !!! | ATTTATTTGTAATTTTTTTA+TGG | + | chr1_2:32777553-32777572 | Msa0067710:intron | 5.0% |
| ! | CTTAGGGTTTGGTCCCTTGA+TGG | - | chr1_2:32776468-32776487 | None:intergenic | 50.0% |
| !! | CCCTGAAGAGCATGCACTTT+TGG | - | chr1_2:32776875-32776894 | None:intergenic | 50.0% |
| !! | CCCTGAAGAGCATGCACTTT+TGG | - | chr1_2:32776875-32776894 | None:intergenic | 50.0% |
| !! | GGAGAGCATGCACTTTTGGA+CGG | - | chr1_2:32777410-32777429 | None:intergenic | 50.0% |
| ! | TCCAAAAGTGCATGCTCTCC+AGG | + | chr1_2:32777410-32777429 | Msa0067710:intron | 50.0% |
| ! | CCAAAAGTGCATGCTCTCCA+GGG | + | chr1_2:32777411-32777430 | Msa0067710:intron | 50.0% |
| !! | CCATGGGAAGCATGCTCTTT+TGG | - | chr1_2:32777721-32777740 | None:intergenic | 50.0% |
| ! | CCAAAAGAGCATGCTTCCCA+TGG | + | chr1_2:32777718-32777737 | Msa0067710:CDS | 50.0% |
| ! | TTGACAGTCTTGGCTTGAGC+AGG | + | chr1_2:32778964-32778983 | Msa0067710:intron | 50.0% |
| ! | TGACAGTCTTGGCTTGAGCA+GGG | + | chr1_2:32778965-32778984 | Msa0067710:intron | 50.0% |
| TGTGGGTTCAACTCCCACTA+AGG | - | chr1_2:32779107-32779126 | None:intergenic | 50.0% | |
| TTCGGGCCCCAAAAAAATCG+AGG | + | chr1_2:32779255-32779274 | Msa0067710:intron | 50.0% | |
| !!! | ACCGGGCCTCGATTTTTTTG+GGG | - | chr1_2:32779264-32779283 | None:intergenic | 50.0% |
| !!! | CACCGGGCCTCGATTTTTTT+GGG | - | chr1_2:32779265-32779284 | None:intergenic | 50.0% |
| !! | CCCTGGAGAGCATGCACTTT+TGG | - | chr1_2:32777414-32777433 | None:intergenic | 55.0% |
| ! | TTCAGTGGCGCGCCTACTTT+TGG | - | chr1_2:32779153-32779172 | None:intergenic | 55.0% |
| GCCCCAAAAAAATCGAGGCC+CGG | + | chr1_2:32779260-32779279 | Msa0067710:intron | 55.0% | |
| !!! | CCACCGGGCCTCGATTTTTT+TGG | - | chr1_2:32779266-32779285 | None:intergenic | 55.0% |
| CCAAAAAAATCGAGGCCCGG+TGG | + | chr1_2:32779263-32779282 | Msa0067710:intron | 55.0% | |
| TTATGTCTCAAGCCCAGGGC+CGG | - | chr1_2:32779316-32779335 | None:intergenic | 55.0% | |
| TCGAGGCTGGGCTATGCCAC+CGG | - | chr1_2:32779282-32779301 | None:intergenic | 65.0% | |
| GTGGCATAGCCCAGCCTCGA+CGG | + | chr1_2:32779282-32779301 | Msa0067710:intron | 65.0% | |
| TGGCATAGCCCAGCCTCGAC+GGG | + | chr1_2:32779283-32779302 | Msa0067710:intron | 65.0% | |
| CGAGGCTGGGCTATGCCACC+GGG | - | chr1_2:32779281-32779300 | None:intergenic | 70.0% | |
| !! | AGCCCAGCCTCGACGGGCTA+TGG | + | chr1_2:32779289-32779308 | Msa0067710:intron | 70.0% |
| !! | GCCCAGCCTCGACGGGCTAT+GGG | + | chr1_2:32779290-32779309 | Msa0067710:intron | 70.0% |
| GCCCATAGCCCGTCGAGGCT+GGG | - | chr1_2:32779294-32779313 | None:intergenic | 70.0% | |
| !! | AGCCTCGACGGGCTATGGGC+CGG | + | chr1_2:32779294-32779313 | Msa0067710:intron | 70.0% |
| GGCCCATAGCCCGTCGAGGC+TGG | - | chr1_2:32779295-32779314 | None:intergenic | 75.0% | |
| ! | ACGGGCTATGGGCCGGCCCT+GGG | + | chr1_2:32779301-32779320 | Msa0067710:intron | 75.0% |
| ! | GGCCGGCCCATAGCCCGTCG+AGG | - | chr1_2:32779299-32779318 | None:intergenic | 80.0% |
| !!! | GACGGGCTATGGGCCGGCCC+TGG | + | chr1_2:32779300-32779319 | Msa0067710:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 32775281 | 32779879 | 32775281 | ID=Msa0067710;Name=Msa0067710 |
| chr1_2 | mRNA | 32775281 | 32779879 | 32775281 | ID=Msa0067710-mRNA-1;Parent=Msa0067710;Name=Msa0067710-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0|0|1|1|1|10|0|522 |
| chr1_2 | exon | 32775281 | 32775337 | 32775281 | ID=Msa0067710-mRNA-1:exon:10769;Parent=Msa0067710-mRNA-1 |
| chr1_2 | exon | 32775444 | 32775852 | 32775444 | ID=Msa0067710-mRNA-1:exon:10770;Parent=Msa0067710-mRNA-1 |
| chr1_2 | exon | 32776003 | 32776136 | 32776003 | ID=Msa0067710-mRNA-1:exon:10771;Parent=Msa0067710-mRNA-1 |
| chr1_2 | exon | 32776224 | 32776497 | 32776224 | ID=Msa0067710-mRNA-1:exon:10772;Parent=Msa0067710-mRNA-1 |
| chr1_2 | exon | 32776604 | 32776702 | 32776604 | ID=Msa0067710-mRNA-1:exon:10773;Parent=Msa0067710-mRNA-1 |
| chr1_2 | exon | 32776953 | 32777051 | 32776953 | ID=Msa0067710-mRNA-1:exon:10774;Parent=Msa0067710-mRNA-1 |
| chr1_2 | exon | 32777143 | 32777241 | 32777143 | ID=Msa0067710-mRNA-1:exon:10775;Parent=Msa0067710-mRNA-1 |
| chr1_2 | exon | 32777641 | 32777739 | 32777641 | ID=Msa0067710-mRNA-1:exon:10776;Parent=Msa0067710-mRNA-1 |
| chr1_2 | exon | 32779481 | 32779545 | 32779481 | ID=Msa0067710-mRNA-1:exon:10777;Parent=Msa0067710-mRNA-1 |
| chr1_2 | exon | 32779646 | 32779879 | 32779646 | ID=Msa0067710-mRNA-1:exon:10778;Parent=Msa0067710-mRNA-1 |
| chr1_2 | CDS | 32775281 | 32775337 | 32775281 | ID=Msa0067710-mRNA-1:cds;Parent=Msa0067710-mRNA-1 |
| chr1_2 | CDS | 32775444 | 32775852 | 32775444 | ID=Msa0067710-mRNA-1:cds;Parent=Msa0067710-mRNA-1 |
| chr1_2 | CDS | 32776003 | 32776136 | 32776003 | ID=Msa0067710-mRNA-1:cds;Parent=Msa0067710-mRNA-1 |
| chr1_2 | CDS | 32776224 | 32776497 | 32776224 | ID=Msa0067710-mRNA-1:cds;Parent=Msa0067710-mRNA-1 |
| chr1_2 | CDS | 32776604 | 32776702 | 32776604 | ID=Msa0067710-mRNA-1:cds;Parent=Msa0067710-mRNA-1 |
| chr1_2 | CDS | 32776953 | 32777051 | 32776953 | ID=Msa0067710-mRNA-1:cds;Parent=Msa0067710-mRNA-1 |
| chr1_2 | CDS | 32777143 | 32777241 | 32777143 | ID=Msa0067710-mRNA-1:cds;Parent=Msa0067710-mRNA-1 |
| chr1_2 | CDS | 32777641 | 32777739 | 32777641 | ID=Msa0067710-mRNA-1:cds;Parent=Msa0067710-mRNA-1 |
| chr1_2 | CDS | 32779481 | 32779545 | 32779481 | ID=Msa0067710-mRNA-1:cds;Parent=Msa0067710-mRNA-1 |
| chr1_2 | CDS | 32779646 | 32779879 | 32779646 | ID=Msa0067710-mRNA-1:cds;Parent=Msa0067710-mRNA-1 |
| Gene Sequence |
| Protein sequence |
