AlfalfaGEDB | Msa0067710

M. sativa cultivar zhongmu-4 / Msa0067710

KEGG: -
GO: -
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0067710	KEH40808.1	80.843	522	43	2	1	522	1	465	0.0	831

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0067710	sp\|Q8L3W1\|VRN1_ARATH	25.225	333	184	9	7	277	4	333	1.31e-20	96.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0067710	A0A072VHA4	80.843	522	43	2	1	522	1	465	0.0	831

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TFs/TRs:

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Gene ID	Type	Classification
Msa0067710	TF	B3

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0067710	MtrunA17_Chr1g0163251	83.688	423	37	1	1	423	1	391	0.0	711
Msa0067710	MtrunA17_Chr1g0163181	55.588	340	123	5	1	320	1	332	1.56e-124	371
Msa0067710	MtrunA17_Chr1g0163181	53.793	145	60	3	379	522	292	430	1.73e-39	149
Msa0067710	MtrunA17_Chr1g0163201	55.363	289	100	3	20	290	18	295	3.82e-100	307
Msa0067710	MtrunA17_Chr1g0163201	68.041	97	31	0	426	522	297	393	6.34e-35	135
Msa0067710	MtrunA17_Chr1g0163261	50.836	299	134	3	1	291	1	294	1.52e-94	290
Msa0067710	MtrunA17_Chr1g0163231	51.724	290	121	8	1	281	1	280	1.52e-90	279
Msa0067710	MtrunA17_Chr1g0171611	53.287	289	106	7	1	281	1	268	8.34e-90	277
Msa0067710	MtrunA17_Chr1g0163241	67.081	161	43	4	1	156	7	162	4.61e-61	198
Msa0067710	MtrunA17_Chr1g0163191	63.924	158	43	1	1	144	1	158	1.50e-60	196

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0067710	AT3G18990.2	25.225	333	184	9	7	277	4	333	1.19e-21	97.1
Msa0067710	AT3G18990.1	25.225	333	184	9	7	277	4	333	1.33e-21	96.7

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Find 93 sgRNAs with CRISPR-Local

Find 282 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTGTGGAGTTGAAAAT+GGG	0.422112	1_2:+32779685	Msa0067710:CDS
AAAGAAGGGATTCTCATTAT+TGG	0.209323	1_2:-32776072	None:intergenic
AAATTGTGGAGTTGAAAATG+GGG	0.628496	1_2:+32779686	Msa0067710:CDS
AACTGACAACCACGAATACT+AGG	0.474382	1_2:-32779742	None:intergenic
AAGACATTGGAGAAACATCT+AGG	0.517707	1_2:+32777689	Msa0067710:CDS
AAGACATTGGAGAAACTTGT+AGG	0.516345	1_2:+32777191	Msa0067710:CDS
AAGACGCTGGAGAAACTTGT+AGG	0.502167	1_2:+32777001	Msa0067710:CDS
AAGCTCAAATGATAACAAAT+GGG	0.514121	1_2:+32775781	Msa0067710:CDS
AATATTATCTTATGAAAATC+GGG	0.396040	1_2:-32775299	None:intergenic
AATTAACCCTACCGGGTGTT+TGG	0.385019	1_2:-32779535	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TATGTGGAGAAATATTGGAA+AGG	+	chr1_2:32775459-32775478	Msa0067710:CDS	30.0%
ATTTCTTGTTGAACACCATT+TGG	-	chr1_2:32775513-32775532	None:intergenic	30.0%
TGGAGAATAATGGTGATATT+TGG	+	chr1_2:32775541-32775560	Msa0067710:CDS	30.0%
TTTGCAAAGTCTCTCAAATA+TGG	+	chr1_2:32775585-32775604	Msa0067710:CDS	30.0%
GAAGCTCAAATGATAACAAA+TGG	+	chr1_2:32775780-32775799	Msa0067710:CDS	30.0%
AAAGAAGGGATTCTCATTAT+TGG	-	chr1_2:32776075-32776094	None:intergenic	30.0%
TGTGGTTCATGAATTGAAAT+AGG	+	chr1_2:32776202-32776221	Msa0067710:intron	30.0%
TATGATCTTGAAAAGTTGCA+TGG	-	chr1_2:32776233-32776252	None:intergenic	30.0%
TCTTCTAATTCTATGACTAC+TGG	+	chr1_2:32776338-32776357	Msa0067710:CDS	30.0%
TACTATTACTAAAGCCATCA+AGG	+	chr1_2:32776451-32776470	Msa0067710:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	32775281	32779879	32775281	ID=Msa0067710;Name=Msa0067710
chr1_2	mRNA	32775281	32779879	32775281	ID=Msa0067710-mRNA-1;Parent=Msa0067710;Name=Msa0067710-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0\|0\|0\|1\|1\|1\|10\|0\|522
chr1_2	exon	32775281	32775337	32775281	ID=Msa0067710-mRNA-1:exon:10769;Parent=Msa0067710-mRNA-1
chr1_2	exon	32775444	32775852	32775444	ID=Msa0067710-mRNA-1:exon:10770;Parent=Msa0067710-mRNA-1
chr1_2	exon	32776003	32776136	32776003	ID=Msa0067710-mRNA-1:exon:10771;Parent=Msa0067710-mRNA-1
chr1_2	exon	32776224	32776497	32776224	ID=Msa0067710-mRNA-1:exon:10772;Parent=Msa0067710-mRNA-1
chr1_2	exon	32776604	32776702	32776604	ID=Msa0067710-mRNA-1:exon:10773;Parent=Msa0067710-mRNA-1
chr1_2	exon	32776953	32777051	32776953	ID=Msa0067710-mRNA-1:exon:10774;Parent=Msa0067710-mRNA-1
chr1_2	exon	32777143	32777241	32777143	ID=Msa0067710-mRNA-1:exon:10775;Parent=Msa0067710-mRNA-1
chr1_2	exon	32777641	32777739	32777641	ID=Msa0067710-mRNA-1:exon:10776;Parent=Msa0067710-mRNA-1
chr1_2	exon	32779481	32779545	32779481	ID=Msa0067710-mRNA-1:exon:10777;Parent=Msa0067710-mRNA-1
chr1_2	exon	32779646	32779879	32779646	ID=Msa0067710-mRNA-1:exon:10778;Parent=Msa0067710-mRNA-1
chr1_2	CDS	32775281	32775337	32775281	ID=Msa0067710-mRNA-1:cds;Parent=Msa0067710-mRNA-1
chr1_2	CDS	32775444	32775852	32775444	ID=Msa0067710-mRNA-1:cds;Parent=Msa0067710-mRNA-1
chr1_2	CDS	32776003	32776136	32776003	ID=Msa0067710-mRNA-1:cds;Parent=Msa0067710-mRNA-1
chr1_2	CDS	32776224	32776497	32776224	ID=Msa0067710-mRNA-1:cds;Parent=Msa0067710-mRNA-1
chr1_2	CDS	32776604	32776702	32776604	ID=Msa0067710-mRNA-1:cds;Parent=Msa0067710-mRNA-1
chr1_2	CDS	32776953	32777051	32776953	ID=Msa0067710-mRNA-1:cds;Parent=Msa0067710-mRNA-1
chr1_2	CDS	32777143	32777241	32777143	ID=Msa0067710-mRNA-1:cds;Parent=Msa0067710-mRNA-1
chr1_2	CDS	32777641	32777739	32777641	ID=Msa0067710-mRNA-1:cds;Parent=Msa0067710-mRNA-1
chr1_2	CDS	32779481	32779545	32779481	ID=Msa0067710-mRNA-1:cds;Parent=Msa0067710-mRNA-1
chr1_2	CDS	32779646	32779879	32779646	ID=Msa0067710-mRNA-1:cds;Parent=Msa0067710-mRNA-1

Gene Sequence

>Msa0067710

ATGTCATTTCAATACATCCCCGATTTTCATAAGATAATATTGCAAGATAAGAAGCTTAGAATTCCCAAGAAATATGTGGAGAAATATTGGAAAGGAATATCAAACCCAATATTTCTTAAATTTCCAAATGGTGTTCAACAAGAAATATTTTGGGTGGAGAATAATGGTGATATTTGGTTTCAAAAAAATTGGGATAATTTTGCAAAGTCTCTCAAATATGGAAATCTTTTAATTTTTAAATATATTGGTGGATCATATTTCAAGGTTAAGATATTTGGTGTCAATGCTTTAGAAATAGATTATTCCAATATAAAATCTGTTGATGAAGTTGTTGAAGCTAGAAAAGAAGATAAAGAAATTGTTGATTTGACTGATGAGAGTGAAATACCAAAGGAAGCTCAAATGATAACAAATGGGAAGAGAAAAATGAGTATAGATATTGACACTCTTAAGCAAAAATTCCCAGGTAGGAACATTGAAGACACAATTAAGAAAGTTAAAAAATGCTCTAGAATTGAAGTTGTTAATGAGACAACCAATAATGAGAATCCCTTCTTTGAAGTTTTAATGACACAAACTTACGCCCATGGTCATATCTTGGTGATACCATGCAACTTTTCAAGATCATACTTGAACAAATTTGAAGGGATTGCAAGCTTAAGAGTTGGAGAGGAGACAGCTATGAAAGTGGATATAGTGTTTAACAATAAAAGATCTTCTAATTCTATGACTACTGGTTGGAAGTCATTTAACCAAAAATATAACTTAGAAGTTGGTGATATATGTAAATTTGTGATGACTCAAAGAGAACCACTTTTATTCACTATTACTATTACTAAAGCCATCAAGGGACCAAACCCTAAGAAGTTGCAAGGTTATAAAGAAGGGATCTCTTCTGGTGATCGTGATATTCTAAAGAGGAGAGACACTGGAGAAACTTGTAGGACCCTTCCAAAAATGCATGCACTTCAGGGTTATAAAGAAGGGATCTCTTATGGTGATCGTGATGTTCTAAAGAGGAAAGACGCTGGAGAAACTTGTAGGACCCTTCCAAAAGTGCAAGCTCTTCAAGGTTATAAAGAAGGGATCTCTTATGATGATCATGATATTCTAAAGAGGAAAGACATTGGAGAAACTTGTAGGACCCTTCCAAAAGTGCATGCTCTTCAGGGTTATAAAGAAGGCATCTCTTCTTGTGATAAGCATATTCTACCGTGGAAAGACATTGGAGAAACATCTAGGAGCTGTCCAAAAGAGCATGCTTCCCATGAATCAAAGGGTCAAAACGTGATGAAACACAATACATTCAAGGTTTTGGTAAATTCCAAACACCCGCATGCACCAAAGAGATTTATGGAAAGAGGATGTCGTGAAAAAATTGTGGAGTTGAAAATGGGGGGACAATCATGGTTCGTAAAAGTGATTTATTATCCTAGTATTCGTGGTTGTCAGTTCAGTAAAGGTTGGATAAAATTTATGGAAGAAAGCAAAGTGGAAATTGGAAATACTTGTCTCCTAGAGCGGATTGATGAGAAAAAGTATGTGTTTAAAGTTTCCATTGTGGGATAG

Protein sequence

>Msa0067710

MSFQYIPDFHKIILQDKKLRIPKKYVEKYWKGISNPIFLKFPNGVQQEIFWVENNGDIWFQKNWDNFAKSLKYGNLLIFKYIGGSYFKVKIFGVNALEIDYSNIKSVDEVVEARKEDKEIVDLTDESEIPKEAQMITNGKRKMSIDIDTLKQKFPGRNIEDTIKKVKKCSRIEVVNETTNNENPFFEVLMTQTYAHGHILVIPCNFSRSYLNKFEGIASLRVGEETAMKVDIVFNNKRSSNSMTTGWKSFNQKYNLEVGDICKFVMTQREPLLFTITITKAIKGPNPKKLQGYKEGISSGDRDILKRRDTGETCRTLPKMHALQGYKEGISYGDRDVLKRKDAGETCRTLPKVQALQGYKEGISYDDHDILKRKDIGETCRTLPKVHALQGYKEGISSCDKHILPWKDIGETSRSCPKEHASHESKGQNVMKHNTFKVLVNSKHPHAPKRFMERGCREKIVELKMGGQSWFVKVIYYPSIRGCQFSKGWIKFMEESKVEIGNTCLLERIDEKKYVFKVSIVG*