AlfalfaGEDB | Msa0067770

M. sativa cultivar zhongmu-4 / Msa0067770

KEGG: -
GO: -
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0067770	KEH40808.1	80.651	522	44	2	1	522	1	465	0.0	829

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0067770	sp\|Q8L3W1\|VRN1_ARATH	25.225	333	184	9	7	277	4	333	1.40e-20	96.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0067770	A0A072VHA4	80.651	522	44	2	1	522	1	465	0.0	829

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TFs/TRs:

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Gene ID	Type	Classification
Msa0067770	TF	B3

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0067770	MtrunA17_Chr1g0163251	83.452	423	38	1	1	423	1	391	0.0	709
Msa0067770	MtrunA17_Chr1g0163181	55.588	340	123	5	1	320	1	332	1.61e-124	371
Msa0067770	MtrunA17_Chr1g0163181	53.793	145	60	3	379	522	292	430	1.76e-39	149
Msa0067770	MtrunA17_Chr1g0163201	55.363	289	100	3	20	290	18	295	3.58e-100	308
Msa0067770	MtrunA17_Chr1g0163201	68.041	97	31	0	426	522	297	393	6.34e-35	135
Msa0067770	MtrunA17_Chr1g0163261	50.836	299	134	3	1	291	1	294	1.40e-94	290
Msa0067770	MtrunA17_Chr1g0163231	51.724	290	121	8	1	281	1	280	1.56e-90	279
Msa0067770	MtrunA17_Chr1g0171611	53.287	289	106	7	1	281	1	268	7.66e-90	277
Msa0067770	MtrunA17_Chr1g0163241	67.081	161	43	4	1	156	7	162	3.58e-61	198
Msa0067770	MtrunA17_Chr1g0163191	63.924	158	43	1	1	144	1	158	1.53e-60	196

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0067770	AT3G18990.2	25.225	333	184	9	7	277	4	333	1.18e-21	97.1
Msa0067770	AT3G18990.1	25.225	333	184	9	7	277	4	333	1.42e-21	96.3

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Find 94 sgRNAs with CRISPR-Local

Find 237 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTGTGGAGTTGAAAAT+GGG	0.422112	1_2:-33012584	Msa0067770:CDS
AAAGAAGGGATTCTCATTAT+TGG	0.209323	1_2:+33015831	None:intergenic
AAATTGTGGAGTTGAAAATG+GGG	0.628496	1_2:-33012583	Msa0067770:CDS
AACTGACAACCACGAATACT+AGG	0.474382	1_2:+33012527	None:intergenic
AAGACATTGGAGAAACATCT+AGG	0.517707	1_2:-33014214	Msa0067770:CDS
AAGACATTGGAGAAACTTGT+AGG	0.516345	1_2:-33014712	Msa0067770:CDS
AAGACGCTGGAGAAACTTGT+AGG	0.502167	1_2:-33014902	Msa0067770:CDS
AAGCTCAAATGATAACAAAT+GGG	0.514121	1_2:-33016122	Msa0067770:CDS
AATATTATCTTATGAAAATC+GGG	0.396040	1_2:+33016604	None:intergenic
AATTAACCCTACCGGGTGTT+TGG	0.385019	1_2:+33012734	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTCTCTGCAACAAAGAAATT+CGG	+	chr1_2:33012559-33012578	None:intergenic	30.0%
TATGTGGAGAAATATTGGAA+AGG	-	chr1_2:33012590-33012609	Msa0067770:CDS	30.0%
ATTTCTTGTTGAACACCATT+TGG	+	chr1_2:33012644-33012663	None:intergenic	30.0%
TGGAGAATAATGGTGATATT+TGG	-	chr1_2:33012672-33012691	Msa0067770:intron	30.0%
TTTGCAAAGTCTCTCAAATA+TGG	-	chr1_2:33012716-33012735	Msa0067770:intron	30.0%
GAAGCTCAAATGATAACAAA+TGG	-	chr1_2:33012911-33012930	Msa0067770:intron	30.0%
AAAGAAGGGATTCTCATTAT+TGG	+	chr1_2:33013206-33013225	None:intergenic	30.0%
TGTGGTTCATGAATTGAAAT+AGG	-	chr1_2:33013333-33013352	Msa0067770:intron	30.0%
ATGATCTTGAAAAGTTGCAT+GGG	+	chr1_2:33013363-33013382	None:intergenic	30.0%
TATGATCTTGAAAAGTTGCA+TGG	+	chr1_2:33013364-33013383	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	33012412	33016644	33012412	ID=Msa0067770;Name=Msa0067770
chr1_2	mRNA	33012412	33016644	33012412	ID=Msa0067770-mRNA-1;Parent=Msa0067770;Name=Msa0067770-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0\|0\|0\|1\|1\|1\|10\|0\|522
chr1_2	exon	33016588	33016644	33016588	ID=Msa0067770-mRNA-1:exon:10860;Parent=Msa0067770-mRNA-1
chr1_2	exon	33016073	33016481	33016073	ID=Msa0067770-mRNA-1:exon:10859;Parent=Msa0067770-mRNA-1
chr1_2	exon	33015789	33015922	33015789	ID=Msa0067770-mRNA-1:exon:10858;Parent=Msa0067770-mRNA-1
chr1_2	exon	33015428	33015701	33015428	ID=Msa0067770-mRNA-1:exon:10857;Parent=Msa0067770-mRNA-1
chr1_2	exon	33015223	33015321	33015223	ID=Msa0067770-mRNA-1:exon:10856;Parent=Msa0067770-mRNA-1
chr1_2	exon	33014874	33014972	33014874	ID=Msa0067770-mRNA-1:exon:10855;Parent=Msa0067770-mRNA-1
chr1_2	exon	33014684	33014782	33014684	ID=Msa0067770-mRNA-1:exon:10854;Parent=Msa0067770-mRNA-1
chr1_2	exon	33014186	33014284	33014186	ID=Msa0067770-mRNA-1:exon:10853;Parent=Msa0067770-mRNA-1
chr1_2	exon	33012746	33012810	33012746	ID=Msa0067770-mRNA-1:exon:10852;Parent=Msa0067770-mRNA-1
chr1_2	exon	33012412	33012645	33012412	ID=Msa0067770-mRNA-1:exon:10851;Parent=Msa0067770-mRNA-1
chr1_2	CDS	33016588	33016644	33016588	ID=Msa0067770-mRNA-1:cds;Parent=Msa0067770-mRNA-1
chr1_2	CDS	33016073	33016481	33016073	ID=Msa0067770-mRNA-1:cds;Parent=Msa0067770-mRNA-1
chr1_2	CDS	33015789	33015922	33015789	ID=Msa0067770-mRNA-1:cds;Parent=Msa0067770-mRNA-1
chr1_2	CDS	33015428	33015701	33015428	ID=Msa0067770-mRNA-1:cds;Parent=Msa0067770-mRNA-1
chr1_2	CDS	33015223	33015321	33015223	ID=Msa0067770-mRNA-1:cds;Parent=Msa0067770-mRNA-1
chr1_2	CDS	33014874	33014972	33014874	ID=Msa0067770-mRNA-1:cds;Parent=Msa0067770-mRNA-1
chr1_2	CDS	33014684	33014782	33014684	ID=Msa0067770-mRNA-1:cds;Parent=Msa0067770-mRNA-1
chr1_2	CDS	33014186	33014284	33014186	ID=Msa0067770-mRNA-1:cds;Parent=Msa0067770-mRNA-1
chr1_2	CDS	33012746	33012810	33012746	ID=Msa0067770-mRNA-1:cds;Parent=Msa0067770-mRNA-1
chr1_2	CDS	33012412	33012645	33012412	ID=Msa0067770-mRNA-1:cds;Parent=Msa0067770-mRNA-1

Gene Sequence

>Msa0067770

ATGTCATTTCAATACATCCCCGATTTTCATAAGATAATATTGCAAGATAAGAAGCTTAGAATTCCCAAGAAATATGTGGAGAAATATTGGAAAGGAATATCAAACCCAATATTTCTTAAATTTCCAAATGGTGTTCAACAAGAAATATTTTGGGTGGAGAATAATGGTGATATTTGGTTTCAAAAAAATTGGGATAATTTTGCAAAGTCTCTCAAATATGGAAATCTTTTAATTTTTAAATATATTGGTGGATCATATTTCAAGGTTAAGATATTTGGTGTCAATGCTTTAGAAATAGATTATTCCAATATAAAATCTGTTGATGAAGTTGTTGAAGCTAGAAAAGAAGATAAAGAAATTGTTGATTTGACTGATGAGAGTGAAATACCAAAGGAAGCTCAAATGATAACAAATGGGAAGAGAAAAATGAGTATAGATATTGACACTCTTAAGCAAAAATTCCCAGGTAGGAACATTGAAGACACAATTAAGAAAGTTAAAAAATGCTCTAGAATTGAAGTTGTTAATGAGACAACCAATAATGAGAATCCCTTCTTTGAAGTTTTAATGACACAAACTTACGCCCATGGTCATATCTTGGTGATCCCATGCAACTTTTCAAGATCATACTTGAACAAATTTGAAGGGATTGCAAGCTTAAGAGTTGGAGAGGAGACAGCTATGAAAGTGGATATAGTGTTTAACAATAAAAGATCTTCTAATTCTATGACTACTGGTTGGAAGTCATTTAACCAAAAATATAACTTAGAAGTTGGTGATATATGTAAATTTGTGATGACTCAAAGAGAACCACTTTTATTCACTATTACTATTACTAAAGCCATCAAGGGACCAAACCCTAAGAAGTTGCAAGGTTATAAAGAAGGGATCTCTTCTGGTGATCATGATATTCTAAAGAGGAGAGACACTGGAGAAACTTGTAGGACCCTTCCAAAAATGCATGCACTTCAGGGTTATAAAGAAGGGATCTCTTATGGTGATCGTGATGTTCTAAAGAGGAAAGACGCTGGAGAAACTTGTAGGACCCTTCCAAAAGTGCAAGCTCTTCAAGGTTATAAAGAAGGGATCTCTTATGATGATCATGATATTCTAAAGAGGAAAGACATTGGAGAAACTTGTAGGACCCTTCCAAAAGTGCATGCTCTTCAGGGTTATAAAGAAGGCATCTCTTCTTGTGATAAGCATATTCTACCGTGGAAAGACATTGGAGAAACATCTAGGAGCTGTCCAAAAGAGCATGCTTCCCATGAATCAAAGGGTCAAAACGTGATGAAACACAATACATTCAAGGTTTTGGTAAATTCCAAACACCCGCATGCACCAAAGAGATTTATGGAAAGAGGATGTCGTGAAAAAATTGTGGAGTTGAAAATGGGGGGACAATCATGGTTCGTAAAAGTGATTTATTATCCTAGTATTCGTGGTTGTCAGTTCAGTAAAGGTTGGATAAAATTTATGGAAGAAAGCAAAGTGGAAATTGGAAATACTTGTCTCCTAGAGCGGATTGATGAGAAAAAGTATGTGTTTAAAGTTTCCATTGTGGGATAG

Protein sequence

>Msa0067770

MSFQYIPDFHKIILQDKKLRIPKKYVEKYWKGISNPIFLKFPNGVQQEIFWVENNGDIWFQKNWDNFAKSLKYGNLLIFKYIGGSYFKVKIFGVNALEIDYSNIKSVDEVVEARKEDKEIVDLTDESEIPKEAQMITNGKRKMSIDIDTLKQKFPGRNIEDTIKKVKKCSRIEVVNETTNNENPFFEVLMTQTYAHGHILVIPCNFSRSYLNKFEGIASLRVGEETAMKVDIVFNNKRSSNSMTTGWKSFNQKYNLEVGDICKFVMTQREPLLFTITITKAIKGPNPKKLQGYKEGISSGDHDILKRRDTGETCRTLPKMHALQGYKEGISYGDRDVLKRKDAGETCRTLPKVQALQGYKEGISYDDHDILKRKDIGETCRTLPKVHALQGYKEGISSCDKHILPWKDIGETSRSCPKEHASHESKGQNVMKHNTFKVLVNSKHPHAPKRFMERGCREKIVELKMGGQSWFVKVIYYPSIRGCQFSKGWIKFMEESKVEIGNTCLLERIDEKKYVFKVSIVG*