Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0067910 | XP_039688434.1 | 44.548 | 321 | 67 | 8 | 1 | 257 | 20 | 293 | 3.25e-64 | 217 |
| Msa0067910 | XP_039688434.1 | 73.148 | 108 | 29 | 0 | 152 | 259 | 325 | 432 | 4.85e-45 | 167 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0067910 | A0A396JPN4 | 44.548 | 321 | 67 | 8 | 1 | 257 | 20 | 293 | 1.55e-64 | 217 |
| Msa0067910 | A0A396JPN4 | 73.148 | 108 | 29 | 0 | 152 | 259 | 325 | 432 | 2.32e-45 | 167 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0067910 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0067910 | MtrunA17_Chr1g0163181 | 44.548 | 321 | 67 | 8 | 1 | 257 | 20 | 293 | 2.99e-68 | 217 |
| Msa0067910 | MtrunA17_Chr1g0163181 | 73.148 | 108 | 29 | 0 | 152 | 259 | 325 | 432 | 4.46e-49 | 167 |
| Msa0067910 | MtrunA17_Chr1g0163201 | 44.051 | 311 | 73 | 7 | 1 | 255 | 18 | 283 | 2.26e-62 | 201 |
| Msa0067910 | MtrunA17_Chr1g0163201 | 75.410 | 122 | 24 | 2 | 144 | 259 | 274 | 395 | 1.20e-53 | 178 |
| Msa0067910 | MtrunA17_Chr1g0163151 | 47.297 | 222 | 54 | 3 | 99 | 257 | 1 | 222 | 1.43e-59 | 188 |
| Msa0067910 | MtrunA17_Chr1g0163111 | 78.750 | 80 | 17 | 0 | 181 | 260 | 153 | 232 | 3.25e-39 | 136 |
| Msa0067910 | MtrunA17_Chr1g0163111 | 38.889 | 162 | 50 | 5 | 99 | 259 | 1 | 114 | 2.40e-21 | 89.4 |
| Msa0067910 | MtrunA17_Chr1g0163251 | 32.595 | 316 | 97 | 8 | 1 | 256 | 20 | 279 | 3.82e-36 | 132 |
| Msa0067910 | MtrunA17_Chr1g0163131 | 32.130 | 277 | 166 | 9 | 2 | 258 | 34 | 308 | 1.59e-30 | 115 |
| Msa0067910 | MtrunA17_Chr1g0163191 | 53.571 | 140 | 18 | 2 | 1 | 93 | 20 | 159 | 9.57e-26 | 99.4 |
| Msa0067910 | MtrunA17_Chr1g0163231 | 26.490 | 302 | 129 | 7 | 1 | 256 | 24 | 278 | 1.41e-24 | 99.8 |
| Msa0067910 | MtrunA17_Chr1g0171611 | 30.314 | 287 | 125 | 9 | 1 | 256 | 24 | 266 | 4.70e-23 | 95.5 |
| Msa0067910 | MtrunA17_Chr1g0163261 | 23.301 | 309 | 134 | 6 | 1 | 256 | 24 | 282 | 8.35e-20 | 86.7 |
| Msa0067910 | MtrunA17_Chr1g0163241 | 40.741 | 135 | 27 | 3 | 1 | 90 | 22 | 148 | 1.76e-19 | 82.8 |
| Msa0067910 | MtrunA17_Chr6g0476171 | 46.739 | 92 | 46 | 2 | 168 | 256 | 154 | 245 | 5.90e-17 | 77.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 59 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGTTCAACAAGAAATATTT+TGG | 0.149501 | 1_2:-33244227 | Msa0067910:CDS |
| GAACACCATTGGGAAATTTA+TGG | 0.175960 | 1_2:+33244244 | None:intergenic |
| TATTTCTCCACATATTTCTT+TGG | 0.248757 | 1_2:+33244294 | None:intergenic |
| ATTGTCCTTTGAGCTTTCTT+TGG | 0.254871 | 1_2:+33243938 | None:intergenic |
| TTGGGAAATTTATGGAATAT+AGG | 0.271972 | 1_2:+33244252 | None:intergenic |
| TTAATGGAACTGTAACAATA+AGG | 0.273629 | 1_2:-33243297 | Msa0067910:CDS |
| TTCATCAACTGATTTGATAT+TGG | 0.273749 | 1_2:+33244054 | None:intergenic |
| AGAAATATGTGGAGAAATAT+TGG | 0.281812 | 1_2:-33244290 | Msa0067910:CDS |
| GCATAACACATTCAAGGTTT+TGG | 0.294441 | 1_2:-33242208 | Msa0067910:CDS |
| TGGGAAATTTATGGAATATA+GGG | 0.298160 | 1_2:+33244253 | None:intergenic |
| AAATATTGTGGAGTTGAAAA+TGG | 0.298192 | 1_2:-33242036 | Msa0067910:CDS |
| AAAGCTCAAAGGACAATAAA+TGG | 0.303877 | 1_2:-33243932 | Msa0067910:CDS |
| CATTAACAGCTTCAGATGTT+TGG | 0.351304 | 1_2:+33243493 | None:intergenic |
| TAATGGAACTGTAACAATAA+GGG | 0.353376 | 1_2:-33243296 | Msa0067910:CDS |
| AGTATTCGTGGCTGCAAGTT+CGG | 0.421831 | 1_2:-33241975 | Msa0067910:CDS |
| ATTTCTTGTTGAACACCATT+GGG | 0.424115 | 1_2:+33244234 | None:intergenic |
| TATTTCTTGTTGAACACCAT+TGG | 0.435829 | 1_2:+33244233 | None:intergenic |
| AATATTGTGGAGTTGAAAAT+GGG | 0.451536 | 1_2:-33242035 | Msa0067910:CDS |
| CAAGAATGCAATGTGGAGAT+TGG | 0.459399 | 1_2:-33241930 | Msa0067910:CDS |
| AAGTGATGAAGAGAGTGATA+AGG | 0.461668 | 1_2:-33243969 | Msa0067910:CDS |
| CGTGGCTGCAAGTTCGGTAA+AGG | 0.465915 | 1_2:-33241969 | Msa0067910:CDS |
| ATAAATATCCAGCACTTGAA+AGG | 0.474577 | 1_2:+33241788 | None:intergenic |
| TGTCATTATAACTTCAAAAG+AGG | 0.475259 | 1_2:+33243464 | None:intergenic |
| GGTGCTGAAGCCACTGAAGA+AGG | 0.489506 | 1_2:-33244031 | Msa0067910:CDS |
| GATGAAGCATAACACATTCA+AGG | 0.490908 | 1_2:-33242214 | Msa0067910:CDS |
| CCAAAGGAATTTATGAAAAG+AGG | 0.492978 | 1_2:-33242068 | Msa0067910:CDS |
| TGTAACAATAAGGGTTGGTA+AGG | 0.500725 | 1_2:-33243287 | Msa0067910:CDS |
| TACTGTACAGAAGGTCATGA+TGG | 0.501012 | 1_2:-33242237 | Msa0067910:intron |
| GTCATTATAACTTCAAAAGA+GGG | 0.507540 | 1_2:+33243465 | None:intergenic |
| AATTATTATGAGAGTATTCG+TGG | 0.512630 | 1_2:-33241987 | Msa0067910:CDS |
| ACTTTCTTTACCTTCTTCAG+TGG | 0.514754 | 1_2:+33244021 | None:intergenic |
| GATGAGGAAGCCACTGAAGA+AGG | 0.517797 | 1_2:-33243998 | Msa0067910:CDS |
| ACTTTCTTCACCTTCTTCAG+TGG | 0.520796 | 1_2:+33243988 | None:intergenic |
| TAACAAAGTCGCCGTGGTGA+AGG | 0.525119 | 1_2:-33243529 | Msa0067910:CDS |
| TAAATATCCAGCACTTGAAA+GGG | 0.527452 | 1_2:+33241789 | None:intergenic |
| AGGATGTCATGGAAATATTG+TGG | 0.534496 | 1_2:-33242048 | Msa0067910:CDS |
| TTTATGAAAAGAGGATGTCA+TGG | 0.534842 | 1_2:-33242059 | Msa0067910:CDS |
| AATGGCAAGAGAAAATTCTC+AGG | 0.536390 | 1_2:-33243914 | Msa0067910:intron |
| AATATCAAATCAGTTGATGA+AGG | 0.540855 | 1_2:-33244052 | Msa0067910:CDS |
| ATAAGGGTTGGTAAGGAGTG+TGG | 0.544312 | 1_2:-33243280 | Msa0067910:CDS |
| GCTGCAAGTTCGGTAAAGGT+TGG | 0.563561 | 1_2:-33241965 | Msa0067910:CDS |
| TTTGGTGAAGAACACAGCCC+CGG | 0.573521 | 1_2:-33242190 | Msa0067910:intron |
| CAAAGTCGCCGTGGTGAAGG+CGG | 0.573915 | 1_2:-33243526 | Msa0067910:CDS |
| TGAAAATGGGGAGGAAGCCA+TGG | 0.575061 | 1_2:-33242022 | Msa0067910:CDS |
| GTATTTGCAGAGTGTACCAA+AGG | 0.583029 | 1_2:-33242084 | Msa0067910:intron |
| ACTTACAAAGAAATAGCCAT+TGG | 0.588354 | 1_2:+33243431 | None:intergenic |
| GAGGGTTCCAAAGAAATATG+TGG | 0.594786 | 1_2:-33244301 | Msa0067910:CDS |
| AGAAGGTAAAGAAAGTGATG+AGG | 0.601536 | 1_2:-33244014 | Msa0067910:CDS |
| ATGACACAATCTTACACCAA+TGG | 0.609025 | 1_2:-33243447 | Msa0067910:CDS |
| ATATTCCATAAATTTCCCAA+TGG | 0.609358 | 1_2:-33244249 | Msa0067910:CDS |
| TATGTGGAGAAATATTGGAA+AGG | 0.617787 | 1_2:-33244285 | Msa0067910:CDS |
| GGAACTGTAACAATAAGGGT+TGG | 0.627229 | 1_2:-33243292 | Msa0067910:CDS |
| TTGTGGAGTTGAAAATGGGG+AGG | 0.632079 | 1_2:-33242031 | Msa0067910:CDS |
| AAATGCCAAAGAAAGCTCAA+AGG | 0.663329 | 1_2:-33243943 | Msa0067910:CDS |
| ACTGTACAGAAGGTCATGAT+GGG | 0.685690 | 1_2:-33242236 | Msa0067910:intron |
| AGGGTTGGTAAGGAGTGTGG+AGG | 0.691473 | 1_2:-33243277 | Msa0067910:intron |
| ATATTGTGGAGTTGAAAATG+GGG | 0.692849 | 1_2:-33242034 | Msa0067910:CDS |
| ATTCATGCAAGAATGCAATG+TGG | 0.719326 | 1_2:-33241937 | Msa0067910:CDS |
| AGGTTGTAACAAAGTCGCCG+TGG | 0.726423 | 1_2:-33243535 | Msa0067910:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATTTATGATAAAAAAAATT+TGG | - | chr1_2:33242407-33242426 | Msa0067910:intron | 10.0% |
| !!! | CTTATATATATGTAATTTTT+AGG | - | chr1_2:33243106-33243125 | Msa0067910:intron | 10.0% |
| !!! | ATGAATAATTTATAAGTTTT+TGG | - | chr1_2:33243600-33243619 | Msa0067910:intron | 10.0% |
| !! | CATATAATATATAGTTAATT+AGG | + | chr1_2:33243695-33243714 | None:intergenic | 10.0% |
| !!! | ACATTTGGTTTAAAAAAATT+GGG | - | chr1_2:33241869-33241888 | Msa0067910:CDS | 15.0% |
| !!! | TATTTTAAGGTTAAGATATT+TGG | - | chr1_2:33241954-33241973 | Msa0067910:CDS | 15.0% |
| !!! | ATAGTTTATTTCTAAAGTAT+TGG | + | chr1_2:33241982-33242001 | None:intergenic | 15.0% |
| !!! | AAATATGTTATTTTTTTGGA+AGG | - | chr1_2:33242365-33242384 | Msa0067910:intron | 15.0% |
| !! | ATTATATCTTTAAACTTTAC+AGG | - | chr1_2:33242502-33242521 | Msa0067910:intron | 15.0% |
| !! | GAAAACTAAAATAAACATAA+GGG | + | chr1_2:33243350-33243369 | None:intergenic | 15.0% |
| !! | TGAAAACTAAAATAAACATA+AGG | + | chr1_2:33243349-33243368 | None:intergenic | 15.0% |
| !! | GAAAACTAAAATAAACATAA+GGG | + | chr1_2:33243350-33243369 | None:intergenic | 15.0% |
| !! | TGAAAACTAAAATAAACATA+AGG | + | chr1_2:33243349-33243368 | None:intergenic | 15.0% |
| !! | TGAAAACTAAAATAAACATA+AGG | - | chr1_2:33243349-33243368 | Msa0067910:intron | 15.0% |
| !! | GAAAACTAAAATAAACATAA+GGG | - | chr1_2:33243350-33243369 | Msa0067910:intron | 15.0% |
| !! | TGAAAACTAAAATAAACATA+AGG | - | chr1_2:33243349-33243368 | Msa0067910:intron | 15.0% |
| !! | GAAAACTAAAATAAACATAA+GGG | - | chr1_2:33243350-33243369 | Msa0067910:intron | 15.0% |
| !!! | GTTTATTTTAGTTTTCAAAT+TGG | + | chr1_2:33243437-33243456 | None:intergenic | 15.0% |
| !! | TGAAAACTAAAATAAACATA+AGG | - | chr1_2:33243349-33243368 | Msa0067910:intron | 15.0% |
| !! | GAAAACTAAAATAAACATAA+GGG | - | chr1_2:33243350-33243369 | Msa0067910:intron | 15.0% |
| !!! | TCAGAACAATTTTAAAAATT+AGG | + | chr1_2:33243545-33243564 | None:intergenic | 15.0% |
| !!! | AGTTTTTAATAGTTAGTAAT+TGG | - | chr1_2:33243627-33243646 | Msa0067910:intron | 15.0% |
| !!! | TCAAATATCTCTAAATTTTT+TGG | - | chr1_2:33243755-33243774 | Msa0067910:intron | 15.0% |
| !!! | CAAATATCTCTAAATTTTTT+GGG | - | chr1_2:33243756-33243775 | Msa0067910:intron | 15.0% |
| !!! | TTTTATTTAATTAATCCTAC+CGG | + | chr1_2:33243889-33243908 | None:intergenic | 15.0% |
| !!! | TGTTCAACAAGAAATATTTT+GGG | - | chr1_2:33241831-33241850 | Msa0067910:three_prime_UTR | 20.0% |
| !!! | GACATTTGGTTTAAAAAAAT+TGG | - | chr1_2:33241868-33241887 | Msa0067910:CDS | 20.0% |
| !!! | AACTCGAAAAAAGATTTTAA+TGG | - | chr1_2:33242744-33242763 | Msa0067910:intron | 20.0% |
| !!! | GTTTATTTTAGTTTTCAAGT+TGG | - | chr1_2:33243154-33243173 | Msa0067910:intron | 20.0% |
| !!! | TGAAAACTTTTAAAACGTAA+GGG | + | chr1_2:33243210-33243229 | None:intergenic | 20.0% |
| !!! | TTGAAAACTTTTAAAACGTA+AGG | + | chr1_2:33243211-33243230 | None:intergenic | 20.0% |
| !! | GAAAACTAAAATAGACATAA+GGG | + | chr1_2:33243269-33243288 | None:intergenic | 20.0% |
| !! | TGAAAACTAAAATAGACATA+AGG | + | chr1_2:33243270-33243289 | None:intergenic | 20.0% |
| !!! | GTTTATTTTAGTTTTCAAGT+CGG | - | chr1_2:33243154-33243173 | Msa0067910:intron | 20.0% |
| !!! | GTTTATTTTAGTTTTCAAGT+TGG | + | chr1_2:33243154-33243173 | None:intergenic | 20.0% |
| !!! | GTTTATTTTAGTTTTCAAGT+TGG | + | chr1_2:33243154-33243173 | None:intergenic | 20.0% |
| !! | TGAAAACTAAAATAAACGTA+TGG | - | chr1_2:33243440-33243459 | Msa0067910:CDS | 20.0% |
| !! | GAAAACTAAAATAAACGTAT+GGG | - | chr1_2:33243441-33243460 | Msa0067910:CDS | 20.0% |
| !! | TTGAAACTTTCAAAACATAA+GGG | - | chr1_2:33243470-33243489 | Msa0067910:CDS | 20.0% |
| !!! | GTTTATTTTAGTTTTCAAGT+TGG | + | chr1_2:33243154-33243173 | None:intergenic | 20.0% |
| !! | TTTATTTAATTAATCCTACC+GGG | + | chr1_2:33243888-33243907 | None:intergenic | 20.0% |
| ! | TATTTCTCCACATATTTCTT+TGG | + | chr1_2:33241766-33241785 | None:intergenic | 25.0% |
| ! | AGAAATATGTGGAGAAATAT+TGG | - | chr1_2:33241767-33241786 | Msa0067910:intron | 25.0% |
| ! | TGGGAAATTTATGGAATATA+GGG | + | chr1_2:33241807-33241826 | None:intergenic | 25.0% |
| ! | TTGGGAAATTTATGGAATAT+AGG | + | chr1_2:33241808-33241827 | None:intergenic | 25.0% |
| ! | ATATTCCATAAATTTCCCAA+TGG | - | chr1_2:33241808-33241827 | Msa0067910:three_prime_UTR | 25.0% |
| !! | GTGTTCAACAAGAAATATTT+TGG | - | chr1_2:33241830-33241849 | Msa0067910:three_prime_UTR | 25.0% |
| ! | TTTGCAAAGTCTTTCAAATA+TGG | - | chr1_2:33241897-33241916 | Msa0067910:CDS | 25.0% |
| ! | CTCTTAACTTTCAAATTCAT+TGG | - | chr1_2:33241924-33241943 | Msa0067910:CDS | 25.0% |
| ! | TTAACTTTCAAATTCATTGG+TGG | - | chr1_2:33241927-33241946 | Msa0067910:CDS | 25.0% |
| !!! | TTCATCAACTGATTTGATAT+TGG | + | chr1_2:33242006-33242025 | None:intergenic | 25.0% |
| !!! | AATATCAAATCAGTTGATGA+AGG | - | chr1_2:33242005-33242024 | Msa0067910:CDS | 25.0% |
| !!! | AACTTTTAAGAGTTATTCCA+TGG | - | chr1_2:33242242-33242261 | Msa0067910:intron | 25.0% |
| ! | GTCATTATAACTTCAAAAGA+GGG | + | chr1_2:33242595-33242614 | None:intergenic | 25.0% |
| ! | TGTCATTATAACTTCAAAAG+AGG | + | chr1_2:33242596-33242615 | None:intergenic | 25.0% |
| ! | TTAATGGAACTGTAACAATA+AGG | - | chr1_2:33242760-33242779 | Msa0067910:intron | 25.0% |
| ! | TAATGGAACTGTAACAATAA+GGG | - | chr1_2:33242761-33242780 | Msa0067910:intron | 25.0% |
| ! | TTACAAAGAAAGATCTTGTT+TGG | - | chr1_2:33242822-33242841 | Msa0067910:intron | 25.0% |
| !! | TACAAAGAAAGATCTTGTTT+GGG | - | chr1_2:33242823-33242842 | Msa0067910:intron | 25.0% |
| ! | TAAAACCTTGTAGTTTCTTT+GGG | + | chr1_2:33242975-33242994 | None:intergenic | 25.0% |
| ! | TTAAAACCTTGTAGTTTCTT+TGG | + | chr1_2:33242976-33242995 | None:intergenic | 25.0% |
| ! | TTGAAACTTTCAAAACGTAA+GGG | + | chr1_2:33243410-33243429 | None:intergenic | 25.0% |
| !!! | CGTTTTAAAAGTTTTCAAGT+TGG | - | chr1_2:33243213-33243232 | Msa0067910:intron | 25.0% |
| ! | TTGAAACTTTCAAAACGTAA+GGG | + | chr1_2:33243410-33243429 | None:intergenic | 25.0% |
| !!! | GTCTATTTTAGTTTTCAAGT+TGG | - | chr1_2:33243273-33243292 | Msa0067910:intron | 25.0% |
| ! | TTGAAACTTTCAAAACGTAA+GGG | - | chr1_2:33243410-33243429 | Msa0067910:intron | 25.0% |
| !!! | ATGTTTTGAAAGTTTCAAGT+TGG | + | chr1_2:33243468-33243487 | None:intergenic | 25.0% |
| ! | CTTGAAACTTTCAAAACATA+AGG | - | chr1_2:33243469-33243488 | Msa0067910:CDS | 25.0% |
| ! | AACTTAATCCTACATAAGTT+AGG | + | chr1_2:33243653-33243672 | None:intergenic | 25.0% |
| ! | GTACAAGCATAAATACAAAA+TGG | + | chr1_2:33243803-33243822 | None:intergenic | 25.0% |
| ! | TTATTTAATTAATCCTACCG+GGG | + | chr1_2:33243887-33243906 | None:intergenic | 25.0% |
| ! | AAATATTGTGGAGTTGAAAA+TGG | - | chr1_2:33244021-33244040 | Msa0067910:CDS | 25.0% |
| ! | AATATTGTGGAGTTGAAAAT+GGG | - | chr1_2:33244022-33244041 | Msa0067910:CDS | 25.0% |
| !!! | AATTATTATGAGAGTATTCG+TGG | - | chr1_2:33244070-33244089 | Msa0067910:intron | 25.0% |
| TATGTGGAGAAATATTGGAA+AGG | - | chr1_2:33241772-33241791 | Msa0067910:intron | 30.0% | |
| ATTTCTTGTTGAACACCATT+GGG | + | chr1_2:33241826-33241845 | None:intergenic | 30.0% | |
| TATTTCTTGTTGAACACCAT+TGG | + | chr1_2:33241827-33241846 | None:intergenic | 30.0% | |
| !! | TCAACAAGAAATATTTTGGG+TGG | - | chr1_2:33241834-33241853 | Msa0067910:three_prime_UTR | 30.0% |
| !! | CATTGGTGGATCATATTTTA+AGG | - | chr1_2:33241941-33241960 | Msa0067910:CDS | 30.0% |
| AAAGCTCAAAGGACAATAAA+TGG | - | chr1_2:33242125-33242144 | Msa0067910:intron | 30.0% | |
| GAAAATTCTCAGGTAAGTTT+AGG | - | chr1_2:33242153-33242172 | Msa0067910:intron | 30.0% | |
| GAAAAAATCACAACAAACCA+TGG | + | chr1_2:33242262-33242281 | None:intergenic | 30.0% | |
| TCTGAAAGCTTGTAAATCTA+AGG | - | chr1_2:33242282-33242301 | Msa0067910:intron | 30.0% | |
| ! | AGTGTCTTGAAAATCGTTTT+TGG | - | chr1_2:33242315-33242334 | Msa0067910:intron | 30.0% |
| ACTTACAAAGAAATAGCCAT+TGG | + | chr1_2:33242629-33242648 | None:intergenic | 30.0% | |
| ! | TAAACCATGATTTGAAACAG+TGG | - | chr1_2:33242697-33242716 | Msa0067910:intron | 30.0% |
| ! | TTTTCTCTTGAAAACTCACT+TGG | + | chr1_2:33242726-33242745 | None:intergenic | 30.0% |
| ATAGTGACAGTGAATGAAAA+AGG | + | chr1_2:33242928-33242947 | None:intergenic | 30.0% | |
| TTTAGGCTTAATTGCATGTT+TGG | - | chr1_2:33243123-33243142 | Msa0067910:intron | 30.0% | |
| CTTGAAACTTTCAAAACGTA+AGG | + | chr1_2:33243409-33243428 | None:intergenic | 30.0% | |
| !!! | ACGTTTTGAAAGTTTCAAGT+TGG | - | chr1_2:33243183-33243202 | Msa0067910:intron | 30.0% |
| CTTGAAACTTTCAAAACGTA+AGG | + | chr1_2:33243409-33243428 | None:intergenic | 30.0% | |
| !!! | ACGTTTTGAAAGTTTCAAGT+TGG | - | chr1_2:33243183-33243202 | Msa0067910:intron | 30.0% |
| CTTGAAACTTTCAAAACGTA+AGG | - | chr1_2:33243409-33243428 | Msa0067910:intron | 30.0% | |
| ATTAGGCTTAATTGCATGTT+TGG | + | chr1_2:33243528-33243547 | None:intergenic | 30.0% | |
| ! | CCTCTTTTCATAAATTCCTT+TGG | + | chr1_2:33243992-33244011 | None:intergenic | 30.0% |
| CCAAAGGAATTTATGAAAAG+AGG | - | chr1_2:33243989-33244008 | Msa0067910:CDS | 30.0% | |
| TTTATGAAAAGAGGATGTCA+TGG | - | chr1_2:33243998-33244017 | Msa0067910:CDS | 30.0% | |
| ATATTGTGGAGTTGAAAATG+GGG | - | chr1_2:33244023-33244042 | Msa0067910:CDS | 30.0% | |
| !! | TAATTCACTTTTACGAACCA+TGG | + | chr1_2:33244055-33244074 | None:intergenic | 30.0% |
| CCTTAAAAACAGACAACTAA+TGG | + | chr1_2:33244222-33244241 | None:intergenic | 30.0% | |
| !!! | CCATTAGTTGTCTGTTTTTA+AGG | - | chr1_2:33244219-33244238 | Msa0067910:intron | 30.0% |
| TAAATATCCAGCACTTGAAA+GGG | + | chr1_2:33244271-33244290 | None:intergenic | 30.0% | |
| ATAAATATCCAGCACTTGAA+AGG | + | chr1_2:33244272-33244291 | None:intergenic | 30.0% | |
| GAACACCATTGGGAAATTTA+TGG | + | chr1_2:33241816-33241835 | None:intergenic | 35.0% | |
| !! | ATATTTTGGGTGGAGAGTAA+TGG | - | chr1_2:33241844-33241863 | Msa0067910:exon | 35.0% |
| ACTTTCTTTACCTTCTTCAG+TGG | + | chr1_2:33242039-33242058 | None:intergenic | 35.0% | |
| AGAAGGTAAAGAAAGTGATG+AGG | - | chr1_2:33242043-33242062 | Msa0067910:CDS | 35.0% | |
| AAGTGATGAAGAGAGTGATA+AGG | - | chr1_2:33242088-33242107 | Msa0067910:intron | 35.0% | |
| AAATGCCAAAGAAAGCTCAA+AGG | - | chr1_2:33242114-33242133 | Msa0067910:intron | 35.0% | |
| ATTGTCCTTTGAGCTTTCTT+TGG | + | chr1_2:33242122-33242141 | None:intergenic | 35.0% | |
| AATGGCAAGAGAAAATTCTC+AGG | - | chr1_2:33242143-33242162 | Msa0067910:intron | 35.0% | |
| CATTAACAGCTTCAGATGTT+TGG | + | chr1_2:33242567-33242586 | None:intergenic | 35.0% | |
| ATGACACAATCTTACACCAA+TGG | - | chr1_2:33242610-33242629 | Msa0067910:intron | 35.0% | |
| GTAACCACTGTTTCAAATCA+TGG | + | chr1_2:33242704-33242723 | None:intergenic | 35.0% | |
| !! | TGTAACAATAAGGGTTGGTA+AGG | - | chr1_2:33242770-33242789 | Msa0067910:intron | 35.0% |
| !! | GAGGTTAGTTTGAGGTATTA+TGG | - | chr1_2:33242799-33242818 | Msa0067910:intron | 35.0% |
| ! | AAAGAAAGATCTTGTTTGGG+TGG | - | chr1_2:33242826-33242845 | Msa0067910:intron | 35.0% |
| TGGTGGTTGGAAAATATTCA+GGG | - | chr1_2:33242846-33242865 | Msa0067910:intron | 35.0% | |
| ! | GTAATTGGCCTAACTTATGT+AGG | - | chr1_2:33243642-33243661 | Msa0067910:intron | 35.0% |
| TTATGCTTGTACTGTACAGA+AGG | - | chr1_2:33243811-33243830 | Msa0067910:intron | 35.0% | |
| GATGAAGCATAACACATTCA+AGG | - | chr1_2:33243843-33243862 | Msa0067910:intron | 35.0% | |
| ! | GCATAACACATTCAAGGTTT+TGG | - | chr1_2:33243849-33243868 | Msa0067910:intron | 35.0% |
| AGGATGTCATGGAAATATTG+TGG | - | chr1_2:33244009-33244028 | Msa0067910:CDS | 35.0% | |
| ATTCATGCAAGAATGCAATG+TGG | - | chr1_2:33244120-33244139 | Msa0067910:intron | 35.0% | |
| TGGAGAGTAATGGTGACATT+TGG | - | chr1_2:33241854-33241873 | Msa0067910:CDS | 40.0% | |
| ACTTTCTTCACCTTCTTCAG+TGG | + | chr1_2:33242072-33242091 | None:intergenic | 40.0% | |
| GGAACTGTAACAATAAGGGT+TGG | - | chr1_2:33242765-33242784 | Msa0067910:intron | 40.0% | |
| GTGGTGGTTGGAAAATATTC+AGG | - | chr1_2:33242845-33242864 | Msa0067910:intron | 40.0% | |
| GCAATCCCAAAGAAACTACA+AGG | - | chr1_2:33242967-33242986 | Msa0067910:intron | 40.0% | |
| TCAAGTCGGTCCAAAACATA+AGG | - | chr1_2:33243318-33243337 | Msa0067910:CDS | 40.0% | |
| CAAGTCGGTCCAAAACATAA+GGG | - | chr1_2:33243319-33243338 | Msa0067910:CDS | 40.0% | |
| !!! | CAAGTTGGTCCCTTATGTTT+TGG | + | chr1_2:33243288-33243307 | None:intergenic | 40.0% |
| TACTGTACAGAAGGTCATGA+TGG | - | chr1_2:33243820-33243839 | Msa0067910:intron | 40.0% | |
| ACTGTACAGAAGGTCATGAT+GGG | - | chr1_2:33243821-33243840 | Msa0067910:intron | 40.0% | |
| GTATTTGCAGAGTGTACCAA+AGG | - | chr1_2:33243973-33243992 | Msa0067910:CDS | 40.0% | |
| CAAGAATGCAATGTGGAGAT+TGG | - | chr1_2:33244127-33244146 | Msa0067910:intron | 40.0% | |
| !! | ATAAGGGTTGGTAAGGAGTG+TGG | - | chr1_2:33242777-33242796 | Msa0067910:intron | 45.0% |
| ! | GAAAGATCTTGTTTGGGTGG+TGG | - | chr1_2:33242829-33242848 | Msa0067910:intron | 45.0% |
| ACTGTCACTATTACTCGTGC+CGG | - | chr1_2:33242937-33242956 | Msa0067910:intron | 45.0% | |
| !! | CTTTGGGATTGCTTCGTTTC+CGG | + | chr1_2:33242959-33242978 | None:intergenic | 45.0% |
| TTGTGGAGTTGAAAATGGGG+AGG | - | chr1_2:33244026-33244045 | Msa0067910:CDS | 45.0% | |
| AGTATTCGTGGCTGCAAGTT+CGG | - | chr1_2:33244082-33244101 | Msa0067910:intron | 45.0% | |
| !!! | ATAAAAATATGTTATTTTTT+TGG | - | chr1_2:33242361-33242380 | Msa0067910:intron | 5.0% |
| !!! | AATTAAAAAAGTTTTTAATT+TGG | - | chr1_2:33243566-33243585 | Msa0067910:intron | 5.0% |
| GATGAGGAAGCCACTGAAGA+AGG | - | chr1_2:33242059-33242078 | Msa0067910:CDS | 50.0% | |
| AGGTTGTAACAAAGTCGCCG+TGG | - | chr1_2:33242522-33242541 | Msa0067910:intron | 50.0% | |
| TAACAAAGTCGCCGTGGTGA+AGG | - | chr1_2:33242528-33242547 | Msa0067910:intron | 50.0% | |
| !! | TTTTCTAGCCGCCTTCACCA+CGG | + | chr1_2:33242542-33242561 | None:intergenic | 50.0% |
| !! | GGAGTGTGGAGGTTAGTTTG+AGG | - | chr1_2:33242791-33242810 | Msa0067910:intron | 50.0% |
| ! | GATCTTGTTTGGGTGGTGGT+TGG | - | chr1_2:33242833-33242852 | Msa0067910:intron | 50.0% |
| TTTGGTGAAGAACACAGCCC+CGG | - | chr1_2:33243867-33243886 | Msa0067910:intron | 50.0% | |
| TGAAAATGGGGAGGAAGCCA+TGG | - | chr1_2:33244035-33244054 | Msa0067910:CDS | 50.0% | |
| GCTGCAAGTTCGGTAAAGGT+TGG | - | chr1_2:33244092-33244111 | Msa0067910:intron | 50.0% | |
| ! | TGCTTTGCCCTTTCAAGTGC+TGG | - | chr1_2:33244261-33244280 | Msa0067910:CDS | 50.0% |
| ! | GGTGCTGAAGCCACTGAAGA+AGG | - | chr1_2:33242026-33242045 | Msa0067910:CDS | 55.0% |
| !! | AGGGTTGGTAAGGAGTGTGG+AGG | - | chr1_2:33242780-33242799 | Msa0067910:intron | 55.0% |
| CGTGGCTGCAAGTTCGGTAA+AGG | - | chr1_2:33244088-33244107 | Msa0067910:intron | 55.0% | |
| CAAAGTCGCCGTGGTGAAGG+CGG | - | chr1_2:33242531-33242550 | Msa0067910:intron | 60.0% | |
| GTGAAGAACACAGCCCCGGT+AGG | - | chr1_2:33243871-33243890 | Msa0067910:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 33241757 | 33244322 | 33241757 | ID=Msa0067910;Name=Msa0067910 |
| chr1_2 | mRNA | 33241757 | 33244322 | 33241757 | ID=Msa0067910-mRNA-1;Parent=Msa0067910;Name=Msa0067910-mRNA-1;_AED=0.42;_eAED=0.42;_QI=0|0.66|0.57|1|0.83|0.71|7|74|260 |
| chr1_2 | exon | 33241757 | 33241779 | 33241757 | ID=Msa0067910-mRNA-1:exon:10956;Parent=Msa0067910-mRNA-1 |
| chr1_2 | exon | 33241803 | 33242096 | 33241803 | ID=Msa0067910-mRNA-1:exon:10955;Parent=Msa0067910-mRNA-1 |
| chr1_2 | exon | 33242191 | 33242249 | 33242191 | ID=Msa0067910-mRNA-1:exon:10954;Parent=Msa0067910-mRNA-1 |
| chr1_2 | exon | 33243278 | 33243362 | 33243278 | ID=Msa0067910-mRNA-1:exon:10953;Parent=Msa0067910-mRNA-1 |
| chr1_2 | exon | 33243437 | 33243555 | 33243437 | ID=Msa0067910-mRNA-1:exon:10952;Parent=Msa0067910-mRNA-1 |
| chr1_2 | exon | 33243915 | 33244088 | 33243915 | ID=Msa0067910-mRNA-1:exon:10951;Parent=Msa0067910-mRNA-1 |
| chr1_2 | exon | 33244220 | 33244322 | 33244220 | ID=Msa0067910-mRNA-1:exon:10950;Parent=Msa0067910-mRNA-1 |
| chr1_2 | CDS | 33244220 | 33244322 | 33244220 | ID=Msa0067910-mRNA-1:cds;Parent=Msa0067910-mRNA-1 |
| chr1_2 | CDS | 33243915 | 33244088 | 33243915 | ID=Msa0067910-mRNA-1:cds;Parent=Msa0067910-mRNA-1 |
| chr1_2 | CDS | 33243437 | 33243555 | 33243437 | ID=Msa0067910-mRNA-1:cds;Parent=Msa0067910-mRNA-1 |
| chr1_2 | CDS | 33243278 | 33243362 | 33243278 | ID=Msa0067910-mRNA-1:cds;Parent=Msa0067910-mRNA-1 |
| chr1_2 | CDS | 33242191 | 33242249 | 33242191 | ID=Msa0067910-mRNA-1:cds;Parent=Msa0067910-mRNA-1 |
| chr1_2 | CDS | 33241854 | 33242096 | 33241854 | ID=Msa0067910-mRNA-1:cds;Parent=Msa0067910-mRNA-1 |
| chr1_2 | three_prime_UTR | 33241803 | 33241853 | 33241803 | ID=Msa0067910-mRNA-1:three_prime_utr;Parent=Msa0067910-mRNA-1 |
| chr1_2 | three_prime_UTR | 33241757 | 33241779 | 33241757 | ID=Msa0067910-mRNA-1:three_prime_utr;Parent=Msa0067910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
