Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0069120 | XP_003627159.1 | 85.799 | 169 | 18 | 3 | 1 | 166 | 1 | 166 | 4.41e-92 | 286 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0069120 | sp|Q9CAI5|CKL2_ARATH | 79.290 | 169 | 29 | 3 | 1 | 166 | 1 | 166 | 3.68e-88 | 268 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0069120 | G7LI85 | 85.799 | 169 | 18 | 3 | 1 | 166 | 1 | 166 | 2.11e-92 | 286 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0069120 | MtrunA17_Chr8g0342821 | 85.799 | 169 | 18 | 3 | 1 | 166 | 1 | 166 | 4.05e-96 | 286 |
| Msa0069120 | MtrunA17_Chr4g0071031 | 78.824 | 170 | 29 | 4 | 1 | 166 | 1 | 167 | 1.04e-88 | 266 |
| Msa0069120 | MtrunA17_Chr2g0329981 | 80.000 | 170 | 27 | 4 | 1 | 166 | 1 | 167 | 1.09e-88 | 266 |
| Msa0069120 | MtrunA17_Chr2g0299661 | 73.529 | 170 | 38 | 4 | 1 | 166 | 1 | 167 | 1.66e-80 | 246 |
| Msa0069120 | MtrunA17_Chr1g0166821 | 67.273 | 165 | 49 | 3 | 5 | 166 | 6 | 168 | 2.12e-76 | 234 |
| Msa0069120 | MtrunA17_Chr1g0183631 | 65.089 | 169 | 54 | 3 | 1 | 166 | 1 | 167 | 7.81e-75 | 230 |
| Msa0069120 | MtrunA17_Chr7g0261501 | 63.905 | 169 | 56 | 3 | 1 | 166 | 1 | 167 | 3.50e-74 | 229 |
| Msa0069120 | MtrunA17_Chr1g0187571 | 65.089 | 169 | 54 | 3 | 1 | 166 | 2 | 168 | 2.42e-73 | 227 |
| Msa0069120 | MtrunA17_Chr6g0486611 | 65.294 | 170 | 52 | 4 | 1 | 166 | 1 | 167 | 8.32e-69 | 214 |
| Msa0069120 | MtrunA17_Chr8g0390211 | 61.765 | 170 | 58 | 4 | 1 | 166 | 1 | 167 | 3.12e-63 | 200 |
| Msa0069120 | MtrunA17_Chr1g0167261 | 57.310 | 171 | 64 | 4 | 1 | 166 | 2 | 168 | 9.25e-63 | 196 |
| Msa0069120 | MtrunA17_Chr3g0140071 | 57.647 | 170 | 65 | 4 | 1 | 166 | 1 | 167 | 9.09e-61 | 194 |
| Msa0069120 | MtrunA17_Chr1g0146151 | 55.882 | 170 | 68 | 4 | 1 | 166 | 1 | 167 | 2.31e-59 | 190 |
| Msa0069120 | MtrunA17_Chr7g0253211 | 34.270 | 178 | 102 | 4 | 4 | 166 | 317 | 494 | 2.71e-27 | 107 |
| Msa0069120 | MtrunA17_Chr1g0213321 | 31.737 | 167 | 105 | 2 | 9 | 166 | 119 | 285 | 2.29e-26 | 104 |
| Msa0069120 | MtrunA17_Chr7g0214531 | 32.558 | 172 | 102 | 3 | 9 | 166 | 37 | 208 | 2.66e-26 | 103 |
| Msa0069120 | MtrunA17_Chr3g0140431 | 32.530 | 166 | 104 | 3 | 9 | 166 | 38 | 203 | 2.44e-24 | 98.2 |
| Msa0069120 | MtrunA17_Chr1g0146301 | 31.325 | 166 | 106 | 3 | 9 | 166 | 124 | 289 | 5.01e-24 | 97.4 |
| Msa0069120 | MtrunA17_Chr8g0340491 | 28.743 | 167 | 99 | 3 | 9 | 158 | 128 | 291 | 2.60e-20 | 87.0 |
| Msa0069120 | MtrunA17_Chr4g0072831 | 30.719 | 153 | 86 | 5 | 1 | 153 | 2 | 134 | 1.06e-11 | 61.6 |
| Msa0069120 | MtrunA17_Chr8g0385971 | 31.548 | 168 | 102 | 6 | 3 | 163 | 84 | 245 | 3.64e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0069120 | AT1G72710.1 | 79.290 | 169 | 29 | 3 | 1 | 166 | 1 | 166 | 3.74e-89 | 268 |
| Msa0069120 | AT4G26100.1 | 77.059 | 170 | 32 | 4 | 1 | 166 | 1 | 167 | 2.76e-86 | 260 |
| Msa0069120 | AT2G19470.1 | 72.781 | 169 | 41 | 3 | 1 | 166 | 1 | 167 | 1.70e-84 | 255 |
| Msa0069120 | AT5G57015.1 | 74.706 | 170 | 36 | 4 | 1 | 166 | 1 | 167 | 2.10e-84 | 255 |
| Msa0069120 | AT1G03930.1 | 68.485 | 165 | 47 | 3 | 5 | 166 | 5 | 167 | 1.46e-77 | 238 |
| Msa0069120 | AT5G44100.1 | 66.667 | 165 | 50 | 3 | 5 | 166 | 5 | 167 | 1.84e-75 | 233 |
| Msa0069120 | AT5G44100.2 | 66.667 | 165 | 50 | 3 | 5 | 166 | 5 | 167 | 1.84e-75 | 233 |
| Msa0069120 | AT3G23340.1 | 62.722 | 169 | 58 | 3 | 1 | 166 | 1 | 167 | 1.84e-72 | 224 |
| Msa0069120 | AT5G43320.1 | 63.030 | 165 | 56 | 3 | 5 | 166 | 5 | 167 | 3.47e-72 | 225 |
| Msa0069120 | AT5G43320.2 | 62.130 | 169 | 59 | 3 | 1 | 166 | 1 | 167 | 4.18e-72 | 221 |
| Msa0069120 | AT5G43320.3 | 62.130 | 169 | 59 | 3 | 1 | 166 | 1 | 167 | 4.18e-72 | 221 |
| Msa0069120 | AT1G04440.1 | 62.722 | 169 | 58 | 3 | 1 | 166 | 1 | 167 | 1.48e-71 | 223 |
| Msa0069120 | AT4G28540.1 | 61.538 | 169 | 60 | 3 | 1 | 166 | 5 | 171 | 3.63e-70 | 219 |
| Msa0069120 | AT4G14340.2 | 62.130 | 169 | 59 | 3 | 1 | 166 | 7 | 173 | 8.72e-70 | 215 |
| Msa0069120 | AT4G14340.1 | 62.130 | 169 | 59 | 3 | 1 | 166 | 7 | 173 | 4.06e-69 | 216 |
| Msa0069120 | AT4G28880.3 | 59.763 | 169 | 63 | 3 | 1 | 166 | 1 | 167 | 6.88e-63 | 199 |
| Msa0069120 | AT4G28880.2 | 59.763 | 169 | 63 | 3 | 1 | 166 | 1 | 167 | 6.88e-63 | 199 |
| Msa0069120 | AT4G28880.1 | 59.763 | 169 | 63 | 3 | 1 | 166 | 1 | 167 | 6.88e-63 | 199 |
| Msa0069120 | AT4G28880.4 | 59.763 | 169 | 63 | 3 | 1 | 166 | 1 | 167 | 6.88e-63 | 199 |
| Msa0069120 | AT4G28860.2 | 59.172 | 169 | 64 | 3 | 1 | 166 | 1 | 167 | 1.29e-62 | 197 |
| Msa0069120 | AT4G28860.1 | 59.172 | 169 | 64 | 3 | 1 | 166 | 1 | 167 | 2.72e-62 | 197 |
| Msa0069120 | AT3G23340.2 | 60.403 | 149 | 54 | 3 | 21 | 166 | 7 | 153 | 8.52e-60 | 191 |
| Msa0069120 | AT4G08800.1 | 53.529 | 170 | 40 | 5 | 1 | 166 | 1 | 135 | 1.08e-48 | 159 |
| Msa0069120 | AT3G03940.1 | 34.831 | 178 | 101 | 4 | 4 | 166 | 133 | 310 | 3.75e-28 | 109 |
| Msa0069120 | AT5G18190.2 | 33.708 | 178 | 103 | 4 | 4 | 166 | 123 | 300 | 7.82e-26 | 103 |
| Msa0069120 | AT5G18190.1 | 33.708 | 178 | 103 | 4 | 4 | 166 | 123 | 300 | 7.82e-26 | 103 |
| Msa0069120 | AT2G25760.1 | 31.111 | 180 | 107 | 4 | 4 | 166 | 100 | 279 | 4.83e-25 | 100 |
| Msa0069120 | AT2G25760.2 | 31.111 | 180 | 107 | 4 | 4 | 166 | 100 | 279 | 4.83e-25 | 100 |
| Msa0069120 | AT3G13670.1 | 30.814 | 172 | 105 | 3 | 9 | 166 | 137 | 308 | 6.02e-24 | 97.8 |
Find 47 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTGAGATTGAAGGATATTT+AGG | 0.218210 | 1_2:+37025244 | None:intergenic |
| GACAATTTCCTCATGGGTTT+AGG | 0.228856 | 1_2:-37024135 | Msa0069120:CDS |
| ATTTATTCAATTTCTGTAAT+AGG | 0.238085 | 1_2:-37024338 | Msa0069120:CDS |
| TCTTTCGGAGAGATCTATTT+AGG | 0.249141 | 1_2:-37025027 | Msa0069120:intron |
| TTCCGTCTTGGGAGGAAAAT+TGG | 0.260322 | 1_2:-37025057 | Msa0069120:CDS |
| TTCTTCATTAGTTTGAATAT+TGG | 0.282133 | 1_2:+37024918 | None:intergenic |
| ACAATTTCCTCATGGGTTTA+GGG | 0.340991 | 1_2:-37024134 | Msa0069120:CDS |
| ATTAAACCCTAATTGAAAAT+CGG | 0.386169 | 1_2:+37025102 | None:intergenic |
| GGTTTAATGGAACCTCGAAT+TGG | 0.394217 | 1_2:-37025087 | Msa0069120:exon |
| AAAATTGGTAGCGGATCTTT+CGG | 0.404618 | 1_2:-37025042 | Msa0069120:CDS |
| AATATCCTTCAATCTCACTA+TGG | 0.430325 | 1_2:-37025240 | Msa0069120:five_prime_UTR |
| TTGGGAATAAGTTCCGTCTT+GGG | 0.445582 | 1_2:-37025068 | Msa0069120:CDS |
| GTTTAATGGAACCTCGAATT+GGG | 0.447782 | 1_2:-37025086 | Msa0069120:exon |
| TCTTATGCTTGCTGATCAAA+TGG | 0.460267 | 1_2:-37024295 | Msa0069120:intron |
| ACACCGGACCATTTCACATT+CGG | 0.480710 | 1_2:+37024414 | None:intergenic |
| CTGGGATACCGAATGTGAAA+TGG | 0.480856 | 1_2:-37024422 | Msa0069120:CDS |
| AACGATTGAGAGTGAGATTG+AGG | 0.486175 | 1_2:+37025194 | None:intergenic |
| ATTGGGAATAAGTTCCGTCT+TGG | 0.488327 | 1_2:-37025069 | Msa0069120:CDS |
| ATCCTAGTGATGGATTTACT+TGG | 0.499759 | 1_2:-37024375 | Msa0069120:CDS |
| TTTACTTGGCCCTAGTCTTG+AGG | 0.502228 | 1_2:-37024361 | Msa0069120:CDS |
| GAAGTATTGATTACAGAAGC+AGG | 0.505545 | 1_2:-37024609 | Msa0069120:intron |
| CGGAACTTATTCCCAATTCG+AGG | 0.514181 | 1_2:+37025075 | None:intergenic |
| AAGCCAGACAATTTCCTCAT+GGG | 0.517628 | 1_2:-37024141 | Msa0069120:CDS |
| TAGGTGTACATCATTGACTT+TGG | 0.518918 | 1_2:-37024001 | Msa0069120:CDS |
| TTGAATAAATCCTCAAGACT+AGG | 0.522442 | 1_2:+37024351 | None:intergenic |
| GTGAGCCATAGTGAGATTGA+AGG | 0.527676 | 1_2:+37025235 | None:intergenic |
| AAACCCATGAGGAAATTGTC+TGG | 0.531680 | 1_2:+37024138 | None:intergenic |
| ATTGAGAGTGAGATTGAGGA+TGG | 0.532979 | 1_2:+37025198 | None:intergenic |
| GTGAAATGGTCCGGTGTCGA+AGG | 0.536640 | 1_2:-37024408 | Msa0069120:CDS |
| TGAGGATGGATGTGAGATTG+AGG | 0.543014 | 1_2:+37025212 | None:intergenic |
| AAAGCCAGACAATTTCCTCA+TGG | 0.544831 | 1_2:-37024142 | Msa0069120:CDS |
| TGAATAAATCCTCAAGACTA+GGG | 0.545896 | 1_2:+37024352 | None:intergenic |
| ATTGTACTCTCCTTCGACAC+CGG | 0.548807 | 1_2:+37024398 | None:intergenic |
| TGCGTCATCGTAGAAGAAGA+AGG | 0.548849 | 1_2:+37025154 | None:intergenic |
| GAGGATGGATGTGAGATTGA+GGG | 0.553579 | 1_2:+37025213 | None:intergenic |
| GCGTCATCGTAGAAGAAGAA+GGG | 0.565745 | 1_2:+37025155 | None:intergenic |
| CACATCAGCATATTCCGTAC+AGG | 0.567384 | 1_2:-37023952 | None:intergenic |
| AGAGTACAATATCCTAGTGA+TGG | 0.570391 | 1_2:-37024385 | Msa0069120:CDS |
| ATACCGAATGTGAAATGGTC+CGG | 0.578759 | 1_2:-37024417 | Msa0069120:CDS |
| GGAATAAGTTCCGTCTTGGG+AGG | 0.606788 | 1_2:-37025065 | Msa0069120:CDS |
| ATTTCCTCATGGGTTTAGGG+AGG | 0.628140 | 1_2:-37024131 | Msa0069120:CDS |
| CTTGGGAGGAAAATTGGTAG+CGG | 0.633001 | 1_2:-37025051 | Msa0069120:CDS |
| CGTCATCGTAGAAGAAGAAG+GGG | 0.636425 | 1_2:+37025156 | None:intergenic |
| GGCCAAGTAAATCCATCACT+AGG | 0.640405 | 1_2:+37024373 | None:intergenic |
| GTCATCGTAGAAGAAGAAGG+GGG | 0.715605 | 1_2:+37025157 | None:intergenic |
| TCATCGTAGAAGAAGAAGGG+GGG | 0.719084 | 1_2:+37025158 | None:intergenic |
| CACGCCTCCCTAAACCCATG+AGG | 0.721724 | 1_2:+37024127 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTTTTTGTGAATTTT+AGG | - | chr1_2:37024242-37024261 | Msa0069120:intron | 10.0% |
| !!! | TTTTTTTTTTGTGAATTTTA+GGG | - | chr1_2:37024243-37024262 | Msa0069120:intron | 10.0% |
| !!! | TTTTTATTCTTTTGAATTTT+TGG | - | chr1_2:37024371-37024390 | Msa0069120:CDS | 10.0% |
| !!! | ATTTTTTTTTTGTGAATTTT+AGG | - | chr1_2:37024242-37024261 | Msa0069120:intron | 10.0% |
| !!! | TTTTTTTTTTGTGAATTTTA+GGG | - | chr1_2:37024243-37024262 | Msa0069120:intron | 10.0% |
| !!! | TTTTTATTCTTTTGAATTTT+TGG | - | chr1_2:37024371-37024390 | Msa0069120:CDS | 10.0% |
| !!! | CATTATCTTTTTCAAAATTT+GGG | + | chr1_2:37024342-37024361 | None:intergenic | 15.0% |
| !!! | TCATTATCTTTTTCAAAATT+TGG | + | chr1_2:37024343-37024362 | None:intergenic | 15.0% |
| !! | ATTTATTCAATTTCTGTAAT+AGG | - | chr1_2:37024874-37024893 | Msa0069120:intron | 15.0% |
| !!! | CATTATCTTTTTCAAAATTT+GGG | + | chr1_2:37024342-37024361 | None:intergenic | 15.0% |
| !!! | TCATTATCTTTTTCAAAATT+TGG | + | chr1_2:37024343-37024362 | None:intergenic | 15.0% |
| !! | ATTTATTCAATTTCTGTAAT+AGG | - | chr1_2:37024874-37024893 | Msa0069120:intron | 15.0% |
| !! | ATTAAACCCTAATTGAAAAT+CGG | + | chr1_2:37024113-37024132 | None:intergenic | 20.0% |
| !!! | TTCTTCATTAGTTTGAATAT+TGG | + | chr1_2:37024297-37024316 | None:intergenic | 20.0% |
| !!! | TCAATAACAACAAAAGTATT+CGG | + | chr1_2:37024409-37024428 | None:intergenic | 20.0% |
| !! | TTATTGAAGTTTGATGAAAA+GGG | - | chr1_2:37024422-37024441 | Msa0069120:CDS | 20.0% |
| !! | ATTAAACCCTAATTGAAAAT+CGG | + | chr1_2:37024113-37024132 | None:intergenic | 20.0% |
| !!! | TTCTTCATTAGTTTGAATAT+TGG | + | chr1_2:37024297-37024316 | None:intergenic | 20.0% |
| !!! | TCAATAACAACAAAAGTATT+CGG | + | chr1_2:37024409-37024428 | None:intergenic | 20.0% |
| !! | TTATTGAAGTTTGATGAAAA+GGG | - | chr1_2:37024422-37024441 | Msa0069120:CDS | 20.0% |
| !! | TTCAATTCCGATTTTCAATT+AGG | - | chr1_2:37024103-37024122 | Msa0069120:intron | 25.0% |
| !! | TCAATTCCGATTTTCAATTA+GGG | - | chr1_2:37024104-37024123 | Msa0069120:intron | 25.0% |
| !! | GATTTTCAATTAGGGTTTAA+TGG | - | chr1_2:37024112-37024131 | Msa0069120:intron | 25.0% |
| ! | TTCACAAAAATGCAAGAAAT+TGG | + | chr1_2:37024223-37024242 | None:intergenic | 25.0% |
| !!! | TTAATTTGTGTTTTTGTTGC+AGG | - | chr1_2:37024269-37024288 | Msa0069120:intron | 25.0% |
| ! | GTTATTGAAGTTTGATGAAA+AGG | - | chr1_2:37024421-37024440 | Msa0069120:CDS | 25.0% |
| ! | TATTGAAGTTTGATGAAAAG+GGG | - | chr1_2:37024423-37024442 | Msa0069120:CDS | 25.0% |
| !! | TTTGAAACAAAGAGTTGTAT+AGG | - | chr1_2:37024502-37024521 | Msa0069120:intron | 25.0% |
| ! | AGGTAATTAGATGATTGATT+AGG | - | chr1_2:37024631-37024650 | Msa0069120:CDS | 25.0% |
| ! | ATACACAAATTCACTAAGTT+GGG | + | chr1_2:37024689-37024708 | None:intergenic | 25.0% |
| ! | AATACACAAATTCACTAAGT+TGG | + | chr1_2:37024690-37024709 | None:intergenic | 25.0% |
| !! | CTTAGTGAATTTGTGTATTT+TGG | - | chr1_2:37024691-37024710 | Msa0069120:intron | 25.0% |
| ! | TAGACTTAATATTACTCACT+TGG | - | chr1_2:37024730-37024749 | Msa0069120:intron | 25.0% |
| ! | TTGAGACATTATAAGAAAAG+TGG | + | chr1_2:37024983-37025002 | None:intergenic | 25.0% |
| !!! | ATACCAAGTCATTTTTACAT+CGG | - | chr1_2:37025042-37025061 | Msa0069120:CDS | 25.0% |
| !! | TTCAATTCCGATTTTCAATT+AGG | - | chr1_2:37024103-37024122 | Msa0069120:intron | 25.0% |
| !! | TCAATTCCGATTTTCAATTA+GGG | - | chr1_2:37024104-37024123 | Msa0069120:intron | 25.0% |
| !! | GATTTTCAATTAGGGTTTAA+TGG | - | chr1_2:37024112-37024131 | Msa0069120:intron | 25.0% |
| ! | TTCACAAAAATGCAAGAAAT+TGG | + | chr1_2:37024223-37024242 | None:intergenic | 25.0% |
| !!! | TTAATTTGTGTTTTTGTTGC+AGG | - | chr1_2:37024269-37024288 | Msa0069120:intron | 25.0% |
| ! | GTTATTGAAGTTTGATGAAA+AGG | - | chr1_2:37024421-37024440 | Msa0069120:CDS | 25.0% |
| ! | TATTGAAGTTTGATGAAAAG+GGG | - | chr1_2:37024423-37024442 | Msa0069120:CDS | 25.0% |
| !! | TTTGAAACAAAGAGTTGTAT+AGG | - | chr1_2:37024502-37024521 | Msa0069120:intron | 25.0% |
| ! | AGGTAATTAGATGATTGATT+AGG | - | chr1_2:37024631-37024650 | Msa0069120:CDS | 25.0% |
| ! | ATACACAAATTCACTAAGTT+GGG | + | chr1_2:37024689-37024708 | None:intergenic | 25.0% |
| ! | AATACACAAATTCACTAAGT+TGG | + | chr1_2:37024690-37024709 | None:intergenic | 25.0% |
| !! | CTTAGTGAATTTGTGTATTT+TGG | - | chr1_2:37024691-37024710 | Msa0069120:intron | 25.0% |
| ! | TAGACTTAATATTACTCACT+TGG | - | chr1_2:37024730-37024749 | Msa0069120:intron | 25.0% |
| ! | TTGAGACATTATAAGAAAAG+TGG | + | chr1_2:37024983-37025002 | None:intergenic | 25.0% |
| !!! | ATACCAAGTCATTTTTACAT+CGG | - | chr1_2:37025042-37025061 | Msa0069120:CDS | 25.0% |
| AGTGAGATTGAAGGATATTT+AGG | + | chr1_2:37023971-37023990 | None:intergenic | 30.0% | |
| AATATCCTTCAATCTCACTA+TGG | - | chr1_2:37023972-37023991 | Msa0069120:CDS | 30.0% | |
| AAAGAGTTGTATAGGCAATA+TGG | - | chr1_2:37024510-37024529 | Msa0069120:intron | 30.0% | |
| AAGAGTTGTATAGGCAATAT+GGG | - | chr1_2:37024511-37024530 | Msa0069120:intron | 30.0% | |
| TATGGGATATTGAATTTCGT+TGG | - | chr1_2:37024528-37024547 | Msa0069120:intron | 30.0% | |
| ! | GTTTTTGATACTGAACTTGT+TGG | - | chr1_2:37024560-37024579 | Msa0069120:intron | 30.0% |
| TATTACTCACTTGGCTTAAA+CGG | - | chr1_2:37024739-37024758 | Msa0069120:intron | 30.0% | |
| ! | GTTTCTTTTCTTTGTTAGCT+GGG | - | chr1_2:37024772-37024791 | Msa0069120:intron | 30.0% |
| TGAATAAATCCTCAAGACTA+GGG | + | chr1_2:37024863-37024882 | None:intergenic | 30.0% | |
| TTGAATAAATCCTCAAGACT+AGG | + | chr1_2:37024864-37024883 | None:intergenic | 30.0% | |
| TTACAAGCTTATGCAATACA+GGG | + | chr1_2:37024950-37024969 | None:intergenic | 30.0% | |
| ATTACAAGCTTATGCAATAC+AGG | + | chr1_2:37024951-37024970 | None:intergenic | 30.0% | |
| !!! | TACCAAGTCATTTTTACATC+GGG | - | chr1_2:37025043-37025062 | Msa0069120:CDS | 30.0% |
| AATTGATACATAACAAGCGT+TGG | + | chr1_2:37025173-37025192 | None:intergenic | 30.0% | |
| TTCATATTTGCCTCTTATGT+AGG | - | chr1_2:37025192-37025211 | Msa0069120:five_prime_UTR | 30.0% | |
| AGTGAGATTGAAGGATATTT+AGG | + | chr1_2:37023971-37023990 | None:intergenic | 30.0% | |
| AATATCCTTCAATCTCACTA+TGG | - | chr1_2:37023972-37023991 | Msa0069120:CDS | 30.0% | |
| AAAGAGTTGTATAGGCAATA+TGG | - | chr1_2:37024510-37024529 | Msa0069120:intron | 30.0% | |
| AAGAGTTGTATAGGCAATAT+GGG | - | chr1_2:37024511-37024530 | Msa0069120:intron | 30.0% | |
| TATGGGATATTGAATTTCGT+TGG | - | chr1_2:37024528-37024547 | Msa0069120:intron | 30.0% | |
| ! | GTTTTTGATACTGAACTTGT+TGG | - | chr1_2:37024560-37024579 | Msa0069120:intron | 30.0% |
| TATTACTCACTTGGCTTAAA+CGG | - | chr1_2:37024739-37024758 | Msa0069120:intron | 30.0% | |
| ! | GTTTCTTTTCTTTGTTAGCT+GGG | - | chr1_2:37024772-37024791 | Msa0069120:intron | 30.0% |
| TGAATAAATCCTCAAGACTA+GGG | + | chr1_2:37024863-37024882 | None:intergenic | 30.0% | |
| TTGAATAAATCCTCAAGACT+AGG | + | chr1_2:37024864-37024883 | None:intergenic | 30.0% | |
| TTACAAGCTTATGCAATACA+GGG | + | chr1_2:37024950-37024969 | None:intergenic | 30.0% | |
| ATTACAAGCTTATGCAATAC+AGG | + | chr1_2:37024951-37024970 | None:intergenic | 30.0% | |
| !!! | TACCAAGTCATTTTTACATC+GGG | - | chr1_2:37025043-37025062 | Msa0069120:CDS | 30.0% |
| AATTGATACATAACAAGCGT+TGG | + | chr1_2:37025173-37025192 | None:intergenic | 30.0% | |
| TTCATATTTGCCTCTTATGT+AGG | - | chr1_2:37025192-37025211 | Msa0069120:five_prime_UTR | 30.0% | |
| GTTTAATGGAACCTCGAATT+GGG | - | chr1_2:37024126-37024145 | Msa0069120:CDS | 35.0% | |
| !! | AAAATTGGTAGCGGATCTTT+CGG | - | chr1_2:37024170-37024189 | Msa0069120:CDS | 35.0% |
| TCTTTCGGAGAGATCTATTT+AGG | - | chr1_2:37024185-37024204 | Msa0069120:CDS | 35.0% | |
| !! | GAAGTATTGATTACAGAAGC+AGG | - | chr1_2:37024603-37024622 | Msa0069120:intron | 35.0% |
| GATTACAGAAGCAGGTAATT+AGG | - | chr1_2:37024611-37024630 | Msa0069120:CDS | 35.0% | |
| ! | GATGATTGATTAGGTTAGTC+TGG | - | chr1_2:37024640-37024659 | Msa0069120:CDS | 35.0% |
| !!! | TTGGCTTAAACGGTTTTTTC+TGG | - | chr1_2:37024749-37024768 | Msa0069120:intron | 35.0% |
| !!! | TGGCTTAAACGGTTTTTTCT+GGG | - | chr1_2:37024750-37024769 | Msa0069120:intron | 35.0% |
| ! | GGTTTCTTTTCTTTGTTAGC+TGG | - | chr1_2:37024771-37024790 | Msa0069120:intron | 35.0% |
| AGAGTACAATATCCTAGTGA+TGG | - | chr1_2:37024827-37024846 | Msa0069120:intron | 35.0% | |
| !! | ATCCTAGTGATGGATTTACT+TGG | - | chr1_2:37024837-37024856 | Msa0069120:intron | 35.0% |
| ! | TCTTATGCTTGCTGATCAAA+TGG | - | chr1_2:37024917-37024936 | Msa0069120:CDS | 35.0% |
| ACAATTTCCTCATGGGTTTA+GGG | - | chr1_2:37025078-37025097 | Msa0069120:CDS | 35.0% | |
| ATGATGTACACCTACATAAG+AGG | + | chr1_2:37025205-37025224 | None:intergenic | 35.0% | |
| !! | TAGGTGTACATCATTGACTT+TGG | - | chr1_2:37025211-37025230 | Msa0069120:five_prime_UTR | 35.0% |
| GTTTAATGGAACCTCGAATT+GGG | - | chr1_2:37024126-37024145 | Msa0069120:CDS | 35.0% | |
| !! | AAAATTGGTAGCGGATCTTT+CGG | - | chr1_2:37024170-37024189 | Msa0069120:CDS | 35.0% |
| TCTTTCGGAGAGATCTATTT+AGG | - | chr1_2:37024185-37024204 | Msa0069120:CDS | 35.0% | |
| !! | GAAGTATTGATTACAGAAGC+AGG | - | chr1_2:37024603-37024622 | Msa0069120:intron | 35.0% |
| GATTACAGAAGCAGGTAATT+AGG | - | chr1_2:37024611-37024630 | Msa0069120:CDS | 35.0% | |
| ! | GATGATTGATTAGGTTAGTC+TGG | - | chr1_2:37024640-37024659 | Msa0069120:CDS | 35.0% |
| !!! | TTGGCTTAAACGGTTTTTTC+TGG | - | chr1_2:37024749-37024768 | Msa0069120:intron | 35.0% |
| !!! | TGGCTTAAACGGTTTTTTCT+GGG | - | chr1_2:37024750-37024769 | Msa0069120:intron | 35.0% |
| ! | GGTTTCTTTTCTTTGTTAGC+TGG | - | chr1_2:37024771-37024790 | Msa0069120:intron | 35.0% |
| AGAGTACAATATCCTAGTGA+TGG | - | chr1_2:37024827-37024846 | Msa0069120:intron | 35.0% | |
| !! | ATCCTAGTGATGGATTTACT+TGG | - | chr1_2:37024837-37024856 | Msa0069120:intron | 35.0% |
| ! | TCTTATGCTTGCTGATCAAA+TGG | - | chr1_2:37024917-37024936 | Msa0069120:CDS | 35.0% |
| ACAATTTCCTCATGGGTTTA+GGG | - | chr1_2:37025078-37025097 | Msa0069120:CDS | 35.0% | |
| ATGATGTACACCTACATAAG+AGG | + | chr1_2:37025205-37025224 | None:intergenic | 35.0% | |
| !! | TAGGTGTACATCATTGACTT+TGG | - | chr1_2:37025211-37025230 | Msa0069120:five_prime_UTR | 35.0% |
| ATTGAGAGTGAGATTGAGGA+TGG | + | chr1_2:37024017-37024036 | None:intergenic | 40.0% | |
| AACGATTGAGAGTGAGATTG+AGG | + | chr1_2:37024021-37024040 | None:intergenic | 40.0% | |
| GGTTTAATGGAACCTCGAAT+TGG | - | chr1_2:37024125-37024144 | Msa0069120:CDS | 40.0% | |
| ATTGGGAATAAGTTCCGTCT+TGG | - | chr1_2:37024143-37024162 | Msa0069120:CDS | 40.0% | |
| TTGGGAATAAGTTCCGTCTT+GGG | - | chr1_2:37024144-37024163 | Msa0069120:CDS | 40.0% | |
| ! | TACCAATTTTCCTCCCAAGA+CGG | + | chr1_2:37024160-37024179 | None:intergenic | 40.0% |
| ATACCGAATGTGAAATGGTC+CGG | - | chr1_2:37024795-37024814 | Msa0069120:intron | 40.0% | |
| ! | TATGCTTGCTGATCAAATGG+TGG | - | chr1_2:37024920-37024939 | Msa0069120:CDS | 40.0% |
| ! | ATGCTTGCTGATCAAATGGT+GGG | - | chr1_2:37024921-37024940 | Msa0069120:CDS | 40.0% |
| GTCCCGATGTAAAAATGACT+TGG | + | chr1_2:37025048-37025067 | None:intergenic | 40.0% | |
| AAAGCCAGACAATTTCCTCA+TGG | - | chr1_2:37025070-37025089 | Msa0069120:CDS | 40.0% | |
| AAGCCAGACAATTTCCTCAT+GGG | - | chr1_2:37025071-37025090 | Msa0069120:CDS | 40.0% | |
| AAACCCATGAGGAAATTGTC+TGG | + | chr1_2:37025077-37025096 | None:intergenic | 40.0% | |
| GACAATTTCCTCATGGGTTT+AGG | - | chr1_2:37025077-37025096 | Msa0069120:CDS | 40.0% | |
| ATTGAGAGTGAGATTGAGGA+TGG | + | chr1_2:37024017-37024036 | None:intergenic | 40.0% | |
| AACGATTGAGAGTGAGATTG+AGG | + | chr1_2:37024021-37024040 | None:intergenic | 40.0% | |
| GGTTTAATGGAACCTCGAAT+TGG | - | chr1_2:37024125-37024144 | Msa0069120:CDS | 40.0% | |
| ATTGGGAATAAGTTCCGTCT+TGG | - | chr1_2:37024143-37024162 | Msa0069120:CDS | 40.0% | |
| TTGGGAATAAGTTCCGTCTT+GGG | - | chr1_2:37024144-37024163 | Msa0069120:CDS | 40.0% | |
| ! | TACCAATTTTCCTCCCAAGA+CGG | + | chr1_2:37024160-37024179 | None:intergenic | 40.0% |
| ATACCGAATGTGAAATGGTC+CGG | - | chr1_2:37024795-37024814 | Msa0069120:intron | 40.0% | |
| ! | TATGCTTGCTGATCAAATGG+TGG | - | chr1_2:37024920-37024939 | Msa0069120:CDS | 40.0% |
| ! | ATGCTTGCTGATCAAATGGT+GGG | - | chr1_2:37024921-37024940 | Msa0069120:CDS | 40.0% |
| GTCCCGATGTAAAAATGACT+TGG | + | chr1_2:37025048-37025067 | None:intergenic | 40.0% | |
| AAAGCCAGACAATTTCCTCA+TGG | - | chr1_2:37025070-37025089 | Msa0069120:CDS | 40.0% | |
| AAGCCAGACAATTTCCTCAT+GGG | - | chr1_2:37025071-37025090 | Msa0069120:CDS | 40.0% | |
| AAACCCATGAGGAAATTGTC+TGG | + | chr1_2:37025077-37025096 | None:intergenic | 40.0% | |
| GACAATTTCCTCATGGGTTT+AGG | - | chr1_2:37025077-37025096 | Msa0069120:CDS | 40.0% | |
| GTGAGCCATAGTGAGATTGA+AGG | + | chr1_2:37023980-37023999 | None:intergenic | 45.0% | |
| GAGGATGGATGTGAGATTGA+GGG | + | chr1_2:37024002-37024021 | None:intergenic | 45.0% | |
| TGAGGATGGATGTGAGATTG+AGG | + | chr1_2:37024003-37024022 | None:intergenic | 45.0% | |
| TCATCGTAGAAGAAGAAGGG+GGG | + | chr1_2:37024057-37024076 | None:intergenic | 45.0% | |
| GTCATCGTAGAAGAAGAAGG+GGG | + | chr1_2:37024058-37024077 | None:intergenic | 45.0% | |
| CGTCATCGTAGAAGAAGAAG+GGG | + | chr1_2:37024059-37024078 | None:intergenic | 45.0% | |
| GCGTCATCGTAGAAGAAGAA+GGG | + | chr1_2:37024060-37024079 | None:intergenic | 45.0% | |
| TGCGTCATCGTAGAAGAAGA+AGG | + | chr1_2:37024061-37024080 | None:intergenic | 45.0% | |
| CGGAACTTATTCCCAATTCG+AGG | + | chr1_2:37024140-37024159 | None:intergenic | 45.0% | |
| TTCCGTCTTGGGAGGAAAAT+TGG | - | chr1_2:37024155-37024174 | Msa0069120:CDS | 45.0% | |
| CTTGGGAGGAAAATTGGTAG+CGG | - | chr1_2:37024161-37024180 | Msa0069120:CDS | 45.0% | |
| GTCTGGTAATCACCATAGTC+TGG | - | chr1_2:37024657-37024676 | Msa0069120:intron | 45.0% | |
| CTGGGATACCGAATGTGAAA+TGG | - | chr1_2:37024790-37024809 | Msa0069120:intron | 45.0% | |
| ACACCGGACCATTTCACATT+CGG | + | chr1_2:37024801-37024820 | None:intergenic | 45.0% | |
| ATTGTACTCTCCTTCGACAC+CGG | + | chr1_2:37024817-37024836 | None:intergenic | 45.0% | |
| GGCCAAGTAAATCCATCACT+AGG | + | chr1_2:37024842-37024861 | None:intergenic | 45.0% | |
| !! | TTTACTTGGCCCTAGTCTTG+AGG | - | chr1_2:37024851-37024870 | Msa0069120:intron | 45.0% |
| ATTTCCTCATGGGTTTAGGG+AGG | - | chr1_2:37025081-37025100 | Msa0069120:CDS | 45.0% | |
| GTGAGCCATAGTGAGATTGA+AGG | + | chr1_2:37023980-37023999 | None:intergenic | 45.0% | |
| GAGGATGGATGTGAGATTGA+GGG | + | chr1_2:37024002-37024021 | None:intergenic | 45.0% | |
| TGAGGATGGATGTGAGATTG+AGG | + | chr1_2:37024003-37024022 | None:intergenic | 45.0% | |
| TCATCGTAGAAGAAGAAGGG+GGG | + | chr1_2:37024057-37024076 | None:intergenic | 45.0% | |
| GTCATCGTAGAAGAAGAAGG+GGG | + | chr1_2:37024058-37024077 | None:intergenic | 45.0% | |
| CGTCATCGTAGAAGAAGAAG+GGG | + | chr1_2:37024059-37024078 | None:intergenic | 45.0% | |
| GCGTCATCGTAGAAGAAGAA+GGG | + | chr1_2:37024060-37024079 | None:intergenic | 45.0% | |
| TGCGTCATCGTAGAAGAAGA+AGG | + | chr1_2:37024061-37024080 | None:intergenic | 45.0% | |
| CGGAACTTATTCCCAATTCG+AGG | + | chr1_2:37024140-37024159 | None:intergenic | 45.0% | |
| TTCCGTCTTGGGAGGAAAAT+TGG | - | chr1_2:37024155-37024174 | Msa0069120:CDS | 45.0% | |
| CTTGGGAGGAAAATTGGTAG+CGG | - | chr1_2:37024161-37024180 | Msa0069120:CDS | 45.0% | |
| GTCTGGTAATCACCATAGTC+TGG | - | chr1_2:37024657-37024676 | Msa0069120:intron | 45.0% | |
| CTGGGATACCGAATGTGAAA+TGG | - | chr1_2:37024790-37024809 | Msa0069120:intron | 45.0% | |
| ACACCGGACCATTTCACATT+CGG | + | chr1_2:37024801-37024820 | None:intergenic | 45.0% | |
| ATTGTACTCTCCTTCGACAC+CGG | + | chr1_2:37024817-37024836 | None:intergenic | 45.0% | |
| GGCCAAGTAAATCCATCACT+AGG | + | chr1_2:37024842-37024861 | None:intergenic | 45.0% | |
| !! | TTTACTTGGCCCTAGTCTTG+AGG | - | chr1_2:37024851-37024870 | Msa0069120:intron | 45.0% |
| ATTTCCTCATGGGTTTAGGG+AGG | - | chr1_2:37025081-37025100 | Msa0069120:CDS | 45.0% | |
| GGAATAAGTTCCGTCTTGGG+AGG | - | chr1_2:37024147-37024166 | Msa0069120:CDS | 50.0% | |
| GTTGGGAGCTTACCAGACTA+TGG | + | chr1_2:37024672-37024691 | None:intergenic | 50.0% | |
| GGAATAAGTTCCGTCTTGGG+AGG | - | chr1_2:37024147-37024166 | Msa0069120:CDS | 50.0% | |
| GTTGGGAGCTTACCAGACTA+TGG | + | chr1_2:37024672-37024691 | None:intergenic | 50.0% | |
| AAGAAGAAGGGGGGAGAGTG+AGG | + | chr1_2:37024048-37024067 | None:intergenic | 55.0% | |
| ! | GTGAAATGGTCCGGTGTCGA+AGG | - | chr1_2:37024804-37024823 | Msa0069120:intron | 55.0% |
| AAGAAGAAGGGGGGAGAGTG+AGG | + | chr1_2:37024048-37024067 | None:intergenic | 55.0% | |
| ! | GTGAAATGGTCCGGTGTCGA+AGG | - | chr1_2:37024804-37024823 | Msa0069120:intron | 55.0% |
| CACGCCTCCCTAAACCCATG+AGG | + | chr1_2:37025088-37025107 | None:intergenic | 60.0% | |
| CACGCCTCCCTAAACCCATG+AGG | + | chr1_2:37025088-37025107 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 37023955 | 37025279 | 37023955 | ID=Msa0069120;Name=Msa0069120 |
| chr1_2 | mRNA | 37023955 | 37025279 | 37023955 | ID=Msa0069120-mRNA-1;Parent=Msa0069120;Name=Msa0069120-mRNA-1;_AED=0.21;_eAED=0.22;_QI=176|0.4|0.33|0.83|0.8|0.66|6|0|166 |
| chr1_2 | exon | 37023955 | 37024020 | 37023955 | ID=Msa0069120-mRNA-1:exon:11713;Parent=Msa0069120-mRNA-1 |
| chr1_2 | exon | 37024113 | 37024214 | 37024113 | ID=Msa0069120-mRNA-1:exon:11712;Parent=Msa0069120-mRNA-1 |
| chr1_2 | exon | 37024296 | 37024444 | 37024296 | ID=Msa0069120-mRNA-1:exon:11711;Parent=Msa0069120-mRNA-1 |
| chr1_2 | exon | 37024610 | 37024673 | 37024610 | ID=Msa0069120-mRNA-1:exon:11710;Parent=Msa0069120-mRNA-1 |
| chr1_2 | exon | 37024903 | 37024943 | 37024903 | ID=Msa0069120-mRNA-1:exon:11709;Parent=Msa0069120-mRNA-1 |
| chr1_2 | exon | 37025028 | 37025279 | 37025028 | ID=Msa0069120-mRNA-1:exon:11708;Parent=Msa0069120-mRNA-1 |
| chr1_2 | five_prime_UTR | 37025104 | 37025279 | 37025104 | ID=Msa0069120-mRNA-1:five_prime_utr;Parent=Msa0069120-mRNA-1 |
| chr1_2 | CDS | 37025028 | 37025103 | 37025028 | ID=Msa0069120-mRNA-1:cds;Parent=Msa0069120-mRNA-1 |
| chr1_2 | CDS | 37024903 | 37024943 | 37024903 | ID=Msa0069120-mRNA-1:cds;Parent=Msa0069120-mRNA-1 |
| chr1_2 | CDS | 37024610 | 37024673 | 37024610 | ID=Msa0069120-mRNA-1:cds;Parent=Msa0069120-mRNA-1 |
| chr1_2 | CDS | 37024296 | 37024444 | 37024296 | ID=Msa0069120-mRNA-1:cds;Parent=Msa0069120-mRNA-1 |
| chr1_2 | CDS | 37024113 | 37024214 | 37024113 | ID=Msa0069120-mRNA-1:cds;Parent=Msa0069120-mRNA-1 |
| chr1_2 | CDS | 37023955 | 37024020 | 37023955 | ID=Msa0069120-mRNA-1:cds;Parent=Msa0069120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
