AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0069810

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0069810 MtrunA17_Chr1g0173541 74.176 182 29 2 1 171 208 382 2.41e-90 273
Msa0069810 MtrunA17_Chr7g0257751 75.429 175 39 1 1 171 214 388 2.64e-87 265
Msa0069810 MtrunA17_Chr4g0059951 63.187 182 49 2 1 171 229 403 6.95e-73 228
Msa0069810 MtrunA17_Chr7g0242561 62.637 182 50 2 1 171 212 386 1.76e-71 224
Msa0069810 MtrunA17_Chr4g0033371 56.818 176 72 1 1 172 228 403 1.16e-63 204
Msa0069810 MtrunA17_Chr5g0448721 58.046 174 67 3 3 171 254 426 2.20e-62 201
Msa0069810 MtrunA17_Chr5g0397101 55.307 179 63 2 3 171 225 396 6.51e-62 199
Msa0069810 MtrunA17_Chr1g0176751 56.571 175 68 2 3 171 282 454 4.40e-61 198
Msa0069810 MtrunA17_Chr0c02g0489761 56.284 183 62 2 1 172 234 409 5.33e-61 197
Msa0069810 MtrunA17_Chr1g0170281 57.386 176 69 3 1 171 274 448 2.86e-60 196
Msa0069810 MtrunA17_Chr8g0385341 55.556 180 66 2 1 171 186 360 4.69e-60 194
Msa0069810 MtrunA17_Chr8g0387671 55.429 175 70 2 3 171 224 396 1.08e-59 193
Msa0069810 MtrunA17_Chr3g0131181 55.682 176 72 3 1 171 185 359 1.23e-59 193
Msa0069810 MtrunA17_Chr4g0074811 54.545 176 72 2 3 172 249 422 2.22e-59 193
Msa0069810 MtrunA17_Chr1g0176421 55.114 176 73 3 1 171 317 491 2.84e-59 194
Msa0069810 MtrunA17_Chr5g0441691 52.459 183 69 2 1 172 224 399 4.33e-59 192
Msa0069810 MtrunA17_Chr1g0200601 53.889 180 69 3 1 171 186 360 7.31e-59 191
Msa0069810 MtrunA17_Chr3g0098951 57.558 172 70 1 3 171 242 413 3.00e-58 190
Msa0069810 MtrunA17_Chr5g0444171 53.333 180 66 2 3 171 250 422 8.11e-57 186
Msa0069810 MtrunA17_Chr1g0157131 52.486 181 68 2 3 172 232 405 1.63e-56 185
Msa0069810 MtrunA17_Chr7g0267751 49.718 177 81 2 1 171 291 465 1.17e-52 176
Msa0069810 MtrunA17_Chr4g0074791 48.864 176 81 3 3 172 254 426 4.05e-49 166
Msa0069810 MtrunA17_Chr5g0405421 43.646 181 88 2 1 172 257 432 2.72e-42 148
Msa0069810 MtrunA17_Chr5g0444191 65.957 94 32 0 3 96 66 159 5.96e-41 137
Msa0069810 MtrunA17_Chr5g0402551 39.326 178 99 2 1 172 294 468 4.21e-40 142
Msa0069810 MtrunA17_Chr4g0045261 39.548 177 98 2 1 171 297 470 7.87e-39 139
Msa0069810 MtrunA17_Chr8g0374701 39.227 181 93 3 1 171 288 461 9.57e-39 139
Msa0069810 MtrunA17_Chr7g0267771 59.184 98 40 0 1 98 244 341 8.05e-37 132
Msa0069810 MtrunA17_Chr7g0256001 38.983 177 100 2 1 171 301 475 9.81e-37 133
Msa0069810 MtrunA17_Chr7g0276111 36.464 181 99 3 1 172 304 477 1.72e-35 130
Msa0069810 MtrunA17_Chr3g0127571 38.333 180 94 4 1 171 298 469 2.44e-35 129
Msa0069810 MtrunA17_Chr1g0203881 45.082 122 59 1 1 122 197 310 5.25e-29 111
Msa0069810 MtrunA17_Chr1g0190131 41.414 99 57 1 1 98 161 259 1.07e-23 94.0
Msa0069810 MtrunA17_Chr7g0274941 41.237 97 55 1 4 98 173 269 3.97e-20 84.7
Msa0069810 MtrunA17_Chr3g0132591 40.816 98 58 0 1 98 258 355 2.49e-19 84.0
Msa0069810 MtrunA17_Chr4g0069301 41.053 95 50 4 7 99 187 277 1.66e-15 73.2
Msa0069810 MtrunA17_Chr5g0441771 37.607 117 56 3 52 168 2 101 3.07e-15 67.8
Msa0069810 MtrunA17_Chr2g0304111 39.394 99 54 4 3 99 180 274 3.25e-15 72.4
Msa0069810 MtrunA17_Chr2g0302431 42.105 95 49 4 7 99 181 271 6.74e-15 71.2
Msa0069810 MtrunA17_Chr6g0478601 37.719 114 59 4 7 113 301 409 7.66e-15 71.2
Msa0069810 MtrunA17_Chr8g0355131 34.351 131 82 2 6 132 208 338 1.27e-14 70.5
Msa0069810 MtrunA17_Chr4g0001331 38.298 94 52 3 7 98 180 269 3.75e-13 66.2
Msa0069810 MtrunA17_Chr4g0008561 35.714 112 67 4 6 115 178 286 5.93e-13 65.9
Msa0069810 MtrunA17_Chr2g0284011 38.384 99 47 5 7 99 172 262 7.48e-13 65.5
Msa0069810 MtrunA17_Chr7g0244561 35.354 99 58 4 3 99 174 268 1.86e-12 64.3
Msa0069810 MtrunA17_Chr6g0468751 39.785 93 50 2 7 97 177 265 2.54e-12 63.9
Msa0069810 MtrunA17_Chr6g0453681 39.785 93 50 2 7 97 177 265 2.67e-12 63.9
Msa0069810 MtrunA17_Chr4g0018201 40.206 97 56 2 6 101 947 1042 3.63e-12 63.5
Msa0069810 MtrunA17_Chr1g0167311 40.625 96 54 3 7 101 316 409 4.06e-12 63.5
Msa0069810 MtrunA17_Chr5g0428981 40.206 97 56 2 6 101 951 1046 5.70e-12 63.2
Msa0069810 MtrunA17_Chr4g0063881 38.614 101 52 5 1 97 164 258 6.79e-12 62.8
Msa0069810 MtrunA17_Chr7g0244521 36.842 95 54 2 7 99 172 262 8.82e-12 62.4
Msa0069810 MtrunA17_Chr1g0166101 39.362 94 51 4 7 98 185 274 9.02e-12 62.4
Msa0069810 MtrunA17_Chr8g0346081 41.053 95 50 4 7 99 176 266 1.03e-11 62.0
Msa0069810 MtrunA17_Chr8g0346071 40.000 95 51 4 7 99 176 266 1.21e-11 62.0
Msa0069810 MtrunA17_Chr3g0132671 36.082 97 56 3 3 97 203 295 2.57e-11 61.2
Msa0069810 MtrunA17_Chr5g0432491 34.021 97 58 4 4 98 181 273 6.78e-11 59.7
Msa0069810 MtrunA17_Chr1g0167351 40.741 81 43 3 7 84 311 389 6.85e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0069810 AT3G57530.2 70.330 182 36 2 1 171 219 393 6.79e-85 256
Msa0069810 AT3G57530.1 70.330 182 36 2 1 171 219 393 6.40e-84 257
Msa0069810 AT5G12480.2 70.286 175 48 1 1 171 121 295 1.16e-81 248
Msa0069810 AT5G12480.1 70.286 175 48 1 1 171 215 389 1.18e-80 248
Msa0069810 AT2G41860.1 72.000 175 45 1 1 171 210 384 9.87e-80 246
Msa0069810 AT2G41860.2 71.429 175 46 1 1 171 210 384 2.65e-79 245
Msa0069810 AT5G19450.2 66.484 182 43 2 1 171 213 387 1.24e-78 243
Msa0069810 AT5G19450.1 66.484 182 43 2 1 171 213 387 1.24e-78 243
Msa0069810 AT3G51850.3 63.187 182 49 2 1 171 210 384 4.13e-73 226
Msa0069810 AT3G51850.2 63.187 182 49 2 1 171 210 384 1.85e-72 226
Msa0069810 AT3G51850.1 63.187 182 49 2 1 171 210 384 6.92e-72 226
Msa0069810 AT1G74740.1 61.538 182 52 2 1 171 215 389 1.53e-68 217
Msa0069810 AT1G18890.1 58.242 182 58 2 1 171 219 393 7.90e-66 210
Msa0069810 AT2G31500.1 57.143 182 60 2 1 171 222 396 1.36e-64 208
Msa0069810 AT4G35310.2 56.818 176 66 3 3 171 255 427 7.48e-63 202
Msa0069810 AT4G35310.1 56.818 176 66 3 3 171 255 427 7.48e-63 202
Msa0069810 AT2G17290.1 56.250 176 67 3 3 171 243 415 7.24e-62 200
Msa0069810 AT2G17290.2 56.250 176 67 3 3 171 243 415 7.24e-62 200
Msa0069810 AT4G38230.1 54.545 176 70 3 3 171 38 210 2.84e-61 193
Msa0069810 AT4G23650.1 57.062 177 68 2 1 171 234 408 4.01e-61 197
Msa0069810 AT4G09570.1 58.140 172 66 3 5 171 185 355 7.17e-61 196
Msa0069810 AT4G38230.4 54.545 176 70 3 3 171 182 354 4.45e-60 194
Msa0069810 AT4G38230.3 54.545 176 70 3 3 171 182 354 4.45e-60 194
Msa0069810 AT4G38230.2 54.545 176 70 3 3 171 212 384 8.70e-60 194
Msa0069810 AT3G10660.2 55.114 176 73 3 1 171 342 516 3.22e-59 195
Msa0069810 AT3G10660.1 55.114 176 73 3 1 171 342 516 3.22e-59 195
Msa0069810 AT5G12180.1 54.645 183 65 2 1 172 229 404 8.39e-59 191
Msa0069810 AT1G35670.1 54.545 176 66 3 5 171 186 356 2.11e-58 190
Msa0069810 AT5G04870.1 54.598 174 73 3 3 171 308 480 4.47e-58 191
Msa0069810 AT1G50700.3 55.114 176 71 2 3 172 231 404 5.87e-58 188
Msa0069810 AT1G50700.1 55.114 176 71 2 3 172 231 404 1.01e-57 188
Msa0069810 AT1G76040.1 54.651 172 75 1 3 171 32 203 1.16e-57 183
Msa0069810 AT1G76040.4 54.651 172 75 1 3 171 32 203 1.16e-57 183
Msa0069810 AT1G50700.2 55.114 176 71 2 3 172 231 404 1.94e-57 188
Msa0069810 AT5G19360.1 53.552 183 67 2 1 172 224 399 5.67e-57 187
Msa0069810 AT2G38910.1 52.273 176 78 2 1 171 290 464 7.97e-57 187
Msa0069810 AT3G20410.2 52.841 176 75 2 3 172 249 422 1.52e-56 186
Msa0069810 AT3G20410.1 52.841 176 75 2 3 172 249 422 1.52e-56 186
Msa0069810 AT4G04720.2 52.778 180 68 2 3 172 238 410 3.45e-56 185
Msa0069810 AT4G04720.1 52.778 180 68 2 3 172 238 410 3.45e-56 185
Msa0069810 AT1G76040.3 54.651 172 75 1 3 171 270 441 7.24e-56 183
Msa0069810 AT1G76040.2 54.651 172 75 1 3 171 270 441 1.51e-55 184
Msa0069810 AT4G04740.4 53.333 180 67 2 3 172 227 399 2.28e-55 182
Msa0069810 AT4G04740.6 53.333 180 67 2 3 172 227 399 2.28e-55 182
Msa0069810 AT4G04740.5 53.333 180 67 2 3 172 227 399 2.28e-55 182
Msa0069810 AT4G04740.3 53.333 180 67 2 3 172 227 399 2.28e-55 182
Msa0069810 AT4G04740.1 53.333 180 67 2 3 172 227 399 2.28e-55 182
Msa0069810 AT4G04740.7 53.333 180 67 2 3 172 227 399 2.28e-55 182
Msa0069810 AT4G04740.2 53.333 180 67 2 3 172 227 399 3.07e-55 182
Msa0069810 AT4G21940.3 52.601 173 79 1 3 172 260 432 4.94e-54 178
Msa0069810 AT5G23580.1 51.412 177 72 3 1 168 178 349 5.01e-54 178
Msa0069810 AT4G21940.1 52.601 173 79 1 3 172 260 432 1.24e-53 178
Msa0069810 AT4G21940.2 52.601 173 79 1 3 172 260 432 1.56e-53 178
Msa0069810 AT2G35890.2 48.889 180 78 3 1 171 288 462 1.48e-52 175
Msa0069810 AT2G35890.1 48.889 180 78 3 1 171 288 462 1.48e-52 175
Msa0069810 AT1G61950.1 52.000 175 76 2 3 171 257 429 3.96e-52 174
Msa0069810 AT4G04710.3 47.486 179 72 3 3 172 184 349 1.21e-43 150
Msa0069810 AT4G04710.2 47.486 179 72 3 3 172 198 363 1.67e-43 150
Msa0069810 AT5G66210.6 42.623 183 87 2 1 172 220 395 2.02e-43 149
Msa0069810 AT5G66210.4 42.623 183 87 2 1 172 220 395 2.02e-43 149
Msa0069810 AT5G66210.5 42.623 183 87 2 1 172 220 395 3.60e-43 149
Msa0069810 AT5G66210.3 42.623 183 87 2 1 172 220 395 5.34e-43 149
Msa0069810 AT5G66210.1 42.623 183 87 2 1 172 220 395 6.85e-43 149
Msa0069810 AT5G66210.2 42.623 183 87 2 1 172 220 395 6.85e-43 149
Msa0069810 AT4G04710.1 45.161 186 79 3 3 172 198 376 2.15e-42 147
Msa0069810 AT4G04710.4 45.161 186 79 3 3 172 198 376 2.17e-42 147
Msa0069810 AT2G17890.1 41.530 183 89 2 1 172 266 441 1.10e-41 147
Msa0069810 AT4G36070.1 40.110 182 91 2 2 172 230 404 1.11e-40 144
Msa0069810 AT4G36070.2 40.110 182 91 2 2 172 230 404 1.46e-40 144
Msa0069810 AT3G50530.2 40.331 181 91 3 1 171 339 512 7.78e-40 142
Msa0069810 AT3G50530.1 40.331 181 91 3 1 171 308 481 8.16e-40 142
Msa0069810 AT4G04700.1 42.222 180 87 2 3 172 190 362 5.28e-38 135
Msa0069810 AT1G49580.1 38.251 183 95 2 1 172 310 485 2.89e-37 135
Msa0069810 AT2G41140.1 40.000 175 100 3 1 171 283 456 1.04e-36 133
Msa0069810 AT3G56760.1 39.429 175 101 3 1 171 284 457 1.10e-36 133
Msa0069810 AT4G04695.1 42.857 182 87 2 1 172 188 362 2.05e-36 131
Msa0069810 AT3G19100.1 39.326 178 99 2 1 172 304 478 6.44e-36 131
Msa0069810 AT5G24430.1 36.686 169 91 2 1 160 303 464 4.68e-34 126
Msa0069810 AT3G49370.1 36.686 169 91 2 1 160 302 463 1.83e-33 124
Msa0069810 AT2G46700.2 53.061 98 46 0 1 98 122 219 7.72e-32 118
Msa0069810 AT2G46700.3 53.061 98 46 0 1 98 122 219 7.72e-32 118
Msa0069810 AT2G46700.1 53.061 98 46 0 1 98 303 400 5.13e-31 117
Msa0069810 AT1G12580.1 48.980 98 50 0 1 98 200 297 3.86e-27 106
Msa0069810 AT1G08650.1 43.617 94 52 1 6 98 175 268 2.08e-22 91.3
Msa0069810 AT1G08650.2 43.158 95 53 1 6 99 175 269 2.24e-22 90.9
Msa0069810 AT1G12680.1 47.312 93 49 0 6 98 258 350 4.81e-22 92.0
Msa0069810 AT3G04530.1 44.681 94 51 1 6 98 171 264 2.64e-21 88.2
Msa0069810 AT1G30270.3 41.053 95 50 4 7 99 95 185 1.13e-15 73.9
Msa0069810 AT1G30270.1 41.053 95 50 4 7 99 192 282 1.19e-15 73.9
Msa0069810 AT1G30270.2 41.053 95 50 4 7 99 192 282 1.20e-15 73.9
Msa0069810 AT4G30960.1 40.404 99 53 4 3 99 180 274 1.93e-15 73.2
Msa0069810 AT5G10930.1 41.489 94 49 3 7 98 173 262 5.61e-15 72.0
Msa0069810 AT5G39440.1 42.391 92 48 2 7 97 177 264 1.96e-14 70.5
Msa0069810 AT5G62310.1 41.176 102 50 3 6 102 943 1039 5.89e-14 69.3
Msa0069810 AT1G48490.4 40.206 97 56 2 7 102 1013 1108 7.38e-14 68.9
Msa0069810 AT1G48490.3 40.206 97 56 2 7 102 1012 1107 7.90e-14 68.9
Msa0069810 AT1G48490.2 40.206 97 56 2 7 102 1012 1107 7.90e-14 68.9
Msa0069810 AT1G48490.1 40.206 97 56 2 7 102 1012 1107 7.90e-14 68.9
Msa0069810 AT3G17850.1 36.036 111 59 4 7 110 1072 1177 8.40e-14 68.9
Msa0069810 AT5G45810.1 38.384 99 55 3 3 99 184 278 1.79e-13 67.8
Msa0069810 AT3G53930.1 36.364 99 54 3 6 99 179 273 2.01e-13 67.8
Msa0069810 AT3G53930.2 36.364 99 54 3 6 99 179 273 2.09e-13 67.8
Msa0069810 AT1G45160.1 38.000 100 52 3 7 101 856 950 2.78e-13 67.4
Msa0069810 AT1G45160.2 38.000 100 52 3 7 101 856 950 2.78e-13 67.4
Msa0069810 AT5G25110.1 40.426 94 50 4 7 98 203 292 3.44e-13 67.0
Msa0069810 AT5G01810.3 34.343 99 59 3 3 99 168 262 4.15e-13 66.6
Msa0069810 AT5G01810.1 34.343 99 59 3 3 99 168 262 4.85e-13 66.2
Msa0069810 AT5G01810.2 34.343 99 59 3 3 99 168 262 4.85e-13 66.2
Msa0069810 AT3G29160.3 40.860 93 49 2 7 97 178 266 1.03e-12 65.5
Msa0069810 AT3G29160.1 40.860 93 49 2 7 97 178 266 1.18e-12 65.5
Msa0069810 AT3G29160.2 40.860 93 49 2 7 97 178 266 1.18e-12 65.5
Msa0069810 AT1G01140.2 36.842 95 56 3 7 99 180 272 1.60e-12 65.1
Msa0069810 AT3G01090.2 40.860 93 49 2 7 97 200 288 1.65e-12 65.1
Msa0069810 AT3G01090.3 40.860 93 49 2 7 97 177 265 1.81e-12 64.7
Msa0069810 AT3G01090.1 40.860 93 49 2 7 97 177 265 1.81e-12 64.7
Msa0069810 AT2G30360.1 33.333 99 60 4 3 99 179 273 1.06e-11 62.4
Msa0069810 AT3G23000.1 37.500 96 54 4 7 100 186 277 1.08e-11 62.4
Msa0069810 AT2G45490.1 32.632 95 61 2 6 99 177 269 1.18e-11 62.0
Msa0069810 AT5G09890.2 40.625 96 55 2 7 101 305 399 1.44e-11 62.4
Msa0069810 AT5G09890.1 40.625 96 55 2 7 101 305 399 1.48e-11 62.0
Msa0069810 AT1G07150.1 36.559 93 55 3 8 99 186 275 5.91e-11 60.5
Msa0069810 AT1G07150.2 36.559 93 55 3 8 99 172 261 6.87e-11 60.1
Msa0069810 AT2G20050.2 35.714 98 56 3 1 95 930 1023 9.37e-11 60.1
Msa0069810 AT2G20050.1 35.714 98 56 3 1 95 933 1026 9.46e-11 60.1

Find 56 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGACATCTCCATCAGGAATT+TGG 0.196700 1_2:+38965090 None:intergenic
ATTCTTTACATCTTACTTTC+TGG 0.208402 1_2:-38966389 Msa0069810:CDS
GTGAGTATATTCCCATTATC+TGG 0.214914 1_2:-38965050 Msa0069810:three_prime_UTR
TCACATCTGCCATAAGTATT+TGG 0.270621 1_2:+38965069 None:intergenic
ACTTCAGGGGCCATGTAATA+TGG 0.287926 1_2:+38966461 None:intergenic
GCACTCCAGATATCAATTTC+AGG 0.289113 1_2:+38966419 None:intergenic
GTGCAGTAAGCCGGCGCTTT+GGG 0.289898 1_2:+38965646 None:intergenic
ACTGAATAGATCCCAGATAA+TGG 0.309160 1_2:+38965038 None:intergenic
TGTGCAGTAAGCCGGCGCTT+TGG 0.327314 1_2:+38965645 None:intergenic
GAAAATTGTGTGAGCCTTGC+TGG 0.331474 1_2:+38965429 None:intergenic
GATGGATGACTTTCTATTAC+CGG 0.338055 1_2:+38964925 None:intergenic
AAATCCTCCTAATGTTTCAT+TGG 0.363649 1_2:-38965467 Msa0069810:CDS
TTTCATTAGTTCTATTTAAC+CGG 0.375769 1_2:-38964944 Msa0069810:three_prime_UTR
GAAAGATTTAACGAGATAGT+TGG 0.378078 1_2:-38966488 Msa0069810:CDS
GTTTCTCCCAATGAAACATT+AGG 0.386917 1_2:+38965460 None:intergenic
CTGAATAGATCCCAGATAAT+GGG 0.406441 1_2:+38965039 None:intergenic
TAGAATAACAGAGGGATTCC+AGG 0.410833 1_2:-38965179 Msa0069810:CDS
TGGAGATGTCCAAATACTTA+TGG 0.411839 1_2:-38965078 Msa0069810:three_prime_UTR
GTAAGCCGGCGCTTTGGGTC+AGG 0.420975 1_2:+38965651 None:intergenic
ATGGCCCTGAAATTGATATC+TGG 0.424350 1_2:-38966424 Msa0069810:CDS
TTGTGTGAGCCTTGCTGGCT+CGG 0.430581 1_2:+38965434 None:intergenic
AATCCTCCTAATGTTTCATT+GGG 0.441297 1_2:-38965466 Msa0069810:CDS
CTTACTGCACAGGAAGTGTT+AGG 0.448592 1_2:-38965633 Msa0069810:intron
TTCGCATTATCAGAAACCTT+TGG 0.449362 1_2:+38965699 None:intergenic
TTAAAATGCAGAAACTGAGC+AGG 0.461264 1_2:-38965775 Msa0069810:intron
TACTCATGTTGACAGTTAGT+TGG 0.462071 1_2:+38964976 None:intergenic
AAAGCGCCGGCTTACTGCAC+AGG 0.477508 1_2:-38965643 Msa0069810:CDS
GTGATGGATACAGAAAATAA+AGG 0.485231 1_2:-38965157 Msa0069810:CDS
GTAATAGAAAGTCATCCATC+TGG 0.499711 1_2:-38964922 Msa0069810:three_prime_UTR
CACTCCAGATATCAATTTCA+GGG 0.504258 1_2:+38966420 None:intergenic
TGTTCCACAGTCGATGGATG+TGG 0.506613 1_2:-38965014 Msa0069810:three_prime_UTR
TGCTTATATTCAAGACCAGA+TGG 0.507162 1_2:+38964907 None:intergenic
GAAATTGATATCTGGAGTGC+TGG 0.520506 1_2:-38966416 Msa0069810:CDS
TTATCAGAAACCTTTGGCCA+TGG 0.532002 1_2:+38965705 None:intergenic
TTGACTTTACAAGGGTTCCA+TGG 0.534211 1_2:-38965722 Msa0069810:CDS
GAAGTTGTTAGAATAACAGA+GGG 0.545888 1_2:-38965187 Msa0069810:CDS
AACAGAGGGATTCCAGGTGA+TGG 0.545986 1_2:-38965173 Msa0069810:CDS
TCAGTTTGTTCCACAGTCGA+TGG 0.546003 1_2:-38965020 Msa0069810:three_prime_UTR
AGTATTTGGACATCTCCATC+AGG 0.548086 1_2:+38965083 None:intergenic
TGAGTATATTCCCATTATCT+GGG 0.548769 1_2:-38965049 Msa0069810:three_prime_UTR
TACAAGGGTTCCATGGCCAA+AGG 0.558449 1_2:-38965715 Msa0069810:CDS
ACATTGATGAACTACGAGTA+GGG 0.566646 1_2:-38965126 Msa0069810:CDS
CTAGGTCACCAAATTCCTGA+TGG 0.568596 1_2:-38965098 Msa0069810:exon
TCTCCCAATGAAACATTAGG+AGG 0.570722 1_2:+38965463 None:intergenic
ACACTTCCTGTGCAGTAAGC+CGG 0.574215 1_2:+38965637 None:intergenic
AGTTGGAAGTCCATATTACA+TGG 0.582119 1_2:-38966471 Msa0069810:CDS
ACTTAAGAAAACAGCACTGA+GGG 0.590032 1_2:-38965394 Msa0069810:intron
TTGATCCTGACCCAAAGCGC+CGG 0.592831 1_2:-38965656 Msa0069810:CDS
AACATTGATGAACTACGAGT+AGG 0.607687 1_2:-38965127 Msa0069810:CDS
AGAAGTTGTTAGAATAACAG+AGG 0.615432 1_2:-38965188 Msa0069810:CDS
ACTACGAGTAGGGTTAAGCT+AGG 0.621790 1_2:-38965116 Msa0069810:exon
ATTTCCACATCCATCGACTG+TGG 0.626550 1_2:+38965010 None:intergenic
GATCAAGCATCTTCTTAACA+AGG 0.646363 1_2:+38965673 None:intergenic
TAAAATGCAGAAACTGAGCA+GGG 0.661481 1_2:-38965774 Msa0069810:intron
AGAAACAGTCCGAGCCAGCA+AGG 0.667822 1_2:-38965443 Msa0069810:CDS
AACTTAAGAAAACAGCACTG+AGG 0.760635 1_2:-38965395 Msa0069810:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTCTTTTTAATACTTCA+GGG + chr1_2:38964908-38964927 None:intergenic 15.0%
!!! TAATTTCTTTTTAATACTTC+AGG + chr1_2:38964909-38964928 None:intergenic 15.0%
!!! GAAGTATTAAAAAGAAATTA+TGG - chr1_2:38964909-38964928 Msa0069810:three_prime_UTR 15.0%
!! AATATACAAATGTAAATACA+AGG + chr1_2:38965435-38965454 None:intergenic 15.0%
!!! AATTTCTTTTTAATACTTCA+GGG + chr1_2:38964908-38964927 None:intergenic 15.0%
!!! TAATTTCTTTTTAATACTTC+AGG + chr1_2:38964909-38964928 None:intergenic 15.0%
!!! GAAGTATTAAAAAGAAATTA+TGG - chr1_2:38964909-38964928 Msa0069810:three_prime_UTR 15.0%
!! AATATACAAATGTAAATACA+AGG + chr1_2:38965435-38965454 None:intergenic 15.0%
!!! ATTTCTTTTTAATACTTCAG+GGG + chr1_2:38964907-38964926 None:intergenic 20.0%
!!! ATCTTTTATTGACTTTACAA+GGG - chr1_2:38965622-38965641 Msa0069810:intron 20.0%
!!! TTTCATTAGTTCTATTTAAC+CGG - chr1_2:38966408-38966427 Msa0069810:CDS 20.0%
!!! CATTTATCTTTTTCATTTTG+TGG + chr1_2:38966489-38966508 None:intergenic 20.0%
!!! ATTTCTTTTTAATACTTCAG+GGG + chr1_2:38964907-38964926 None:intergenic 20.0%
!!! ATCTTTTATTGACTTTACAA+GGG - chr1_2:38965622-38965641 Msa0069810:intron 20.0%
!!! TTTCATTAGTTCTATTTAAC+CGG - chr1_2:38966408-38966427 Msa0069810:CDS 20.0%
!!! CATTTATCTTTTTCATTTTG+TGG + chr1_2:38966489-38966508 None:intergenic 20.0%
! ATTCTTTACATCTTACTTTC+TGG - chr1_2:38964963-38964982 Msa0069810:three_prime_UTR 25.0%
! CACTTTAACCTAAATTCTTA+AGG + chr1_2:38965156-38965175 None:intergenic 25.0%
!! AACTACTCTAAAAAAAGAGT+AGG + chr1_2:38965282-38965301 None:intergenic 25.0%
! TTACTATAACCTACTTGAAA+GGG - chr1_2:38965300-38965319 Msa0069810:intron 25.0%
!!! GATCTTTTATTGACTTTACA+AGG - chr1_2:38965621-38965640 Msa0069810:intron 25.0%
! TAAAAAAGACCGAAATAGAA+GGG + chr1_2:38966083-38966102 None:intergenic 25.0%
! ATAAAAAAGACCGAAATAGA+AGG + chr1_2:38966084-38966103 None:intergenic 25.0%
! ATTCTTTACATCTTACTTTC+TGG - chr1_2:38964963-38964982 Msa0069810:three_prime_UTR 25.0%
! CACTTTAACCTAAATTCTTA+AGG + chr1_2:38965156-38965175 None:intergenic 25.0%
!! AACTACTCTAAAAAAAGAGT+AGG + chr1_2:38965282-38965301 None:intergenic 25.0%
! TTACTATAACCTACTTGAAA+GGG - chr1_2:38965300-38965319 Msa0069810:intron 25.0%
!!! GATCTTTTATTGACTTTACA+AGG - chr1_2:38965621-38965640 Msa0069810:intron 25.0%
! TAAAAAAGACCGAAATAGAA+GGG + chr1_2:38966083-38966102 None:intergenic 25.0%
! ATAAAAAAGACCGAAATAGA+AGG + chr1_2:38966084-38966103 None:intergenic 25.0%
GAAAGATTTAACGAGATAGT+TGG - chr1_2:38964864-38964883 Msa0069810:three_prime_UTR 30.0%
TATCTTGCCAAAGCTATATT+TGG - chr1_2:38965015-38965034 Msa0069810:three_prime_UTR 30.0%
TCAAAAGCCAAATATAGCTT+TGG + chr1_2:38965025-38965044 None:intergenic 30.0%
! TTGAACCTTTTATAAGTGAG+AGG - chr1_2:38965114-38965133 Msa0069810:exon 30.0%
GTTACTATAACCTACTTGAA+AGG - chr1_2:38965299-38965318 Msa0069810:intron 30.0%
TTACCATGATCTTTCTTATG+TGG - chr1_2:38965346-38965365 Msa0069810:intron 30.0%
TGATGTCATGAATATTGTGA+TGG + chr1_2:38965503-38965522 None:intergenic 30.0%
ACACAAAAAAGCTTGAAAAC+TGG - chr1_2:38965804-38965823 Msa0069810:intron 30.0%
CACAAAAAAGCTTGAAAACT+GGG - chr1_2:38965805-38965824 Msa0069810:intron 30.0%
AAATCCTCCTAATGTTTCAT+TGG - chr1_2:38965885-38965904 Msa0069810:intron 30.0%
AATCCTCCTAATGTTTCATT+GGG - chr1_2:38965886-38965905 Msa0069810:intron 30.0%
AGAAGTTGTTAGAATAACAG+AGG - chr1_2:38966164-38966183 Msa0069810:intron 30.0%
GAAGTTGTTAGAATAACAGA+GGG - chr1_2:38966165-38966184 Msa0069810:intron 30.0%
!! GTGATGGATACAGAAAATAA+AGG - chr1_2:38966195-38966214 Msa0069810:intron 30.0%
TGAGTATATTCCCATTATCT+GGG - chr1_2:38966303-38966322 Msa0069810:intron 30.0%
GAAAGATTTAACGAGATAGT+TGG - chr1_2:38964864-38964883 Msa0069810:three_prime_UTR 30.0%
TATCTTGCCAAAGCTATATT+TGG - chr1_2:38965015-38965034 Msa0069810:three_prime_UTR 30.0%
TCAAAAGCCAAATATAGCTT+TGG + chr1_2:38965025-38965044 None:intergenic 30.0%
! TTGAACCTTTTATAAGTGAG+AGG - chr1_2:38965114-38965133 Msa0069810:exon 30.0%
GTTACTATAACCTACTTGAA+AGG - chr1_2:38965299-38965318 Msa0069810:intron 30.0%
TTACCATGATCTTTCTTATG+TGG - chr1_2:38965346-38965365 Msa0069810:intron 30.0%
TGATGTCATGAATATTGTGA+TGG + chr1_2:38965503-38965522 None:intergenic 30.0%
ACACAAAAAAGCTTGAAAAC+TGG - chr1_2:38965804-38965823 Msa0069810:intron 30.0%
CACAAAAAAGCTTGAAAACT+GGG - chr1_2:38965805-38965824 Msa0069810:intron 30.0%
AAATCCTCCTAATGTTTCAT+TGG - chr1_2:38965885-38965904 Msa0069810:intron 30.0%
AATCCTCCTAATGTTTCATT+GGG - chr1_2:38965886-38965905 Msa0069810:intron 30.0%
AGAAGTTGTTAGAATAACAG+AGG - chr1_2:38966164-38966183 Msa0069810:intron 30.0%
GAAGTTGTTAGAATAACAGA+GGG - chr1_2:38966165-38966184 Msa0069810:intron 30.0%
!! GTGATGGATACAGAAAATAA+AGG - chr1_2:38966195-38966214 Msa0069810:intron 30.0%
TGAGTATATTCCCATTATCT+GGG - chr1_2:38966303-38966322 Msa0069810:intron 30.0%
AGTTGGAAGTCCATATTACA+TGG - chr1_2:38964881-38964900 Msa0069810:three_prime_UTR 35.0%
CACTCCAGATATCAATTTCA+GGG + chr1_2:38964935-38964954 None:intergenic 35.0%
!! TTTCTGGTGTCAATCCTTTT+TGG - chr1_2:38964979-38964998 Msa0069810:three_prime_UTR 35.0%
!! TTCTGGTGTCAATCCTTTTT+GGG - chr1_2:38964980-38964999 Msa0069810:three_prime_UTR 35.0%
!!! GCTATATTTGGCTTTTGAGT+CGG - chr1_2:38965027-38965046 Msa0069810:three_prime_UTR 35.0%
! TGTATCCTAGATGTGGATTT+TGG + chr1_2:38965070-38965089 None:intergenic 35.0%
! AAAATCCACATCTAGGATAC+AGG - chr1_2:38965069-38965088 Msa0069810:three_prime_UTR 35.0%
! TCTTAAGGCGTTAGGTTTAT+GGG + chr1_2:38965141-38965160 None:intergenic 35.0%
! TTCTTAAGGCGTTAGGTTTA+TGG + chr1_2:38965142-38965161 None:intergenic 35.0%
ACCTAACGCCTTAAGAATTT+AGG - chr1_2:38965145-38965164 Msa0069810:CDS 35.0%
! ACCTAAATTCTTAAGGCGTT+AGG + chr1_2:38965149-38965168 None:intergenic 35.0%
AGAAACCATACAAGTGAGTT+GGG + chr1_2:38965184-38965203 None:intergenic 35.0%
AAAATATGTGCGCCTCTATT+AGG + chr1_2:38965247-38965266 None:intergenic 35.0%
! ATTACAACACCCTTTCAAGT+AGG + chr1_2:38965312-38965331 None:intergenic 35.0%
CATCCACATAAGAAAGATCA+TGG + chr1_2:38965352-38965371 None:intergenic 35.0%
CTTTCTTATGTGGATGAAGA+TGG - chr1_2:38965356-38965375 Msa0069810:intron 35.0%
!! AGATGGTATTTTTGTGCTTG+TGG - chr1_2:38965373-38965392 Msa0069810:intron 35.0%
TTAAAATGCAGAAACTGAGC+AGG - chr1_2:38965577-38965596 Msa0069810:intron 35.0%
TAAAATGCAGAAACTGAGCA+GGG - chr1_2:38965578-38965597 Msa0069810:intron 35.0%
TTCGCATTATCAGAAACCTT+TGG + chr1_2:38965656-38965675 None:intergenic 35.0%
GATCAAGCATCTTCTTAACA+AGG + chr1_2:38965682-38965701 None:intergenic 35.0%
AACTAAATGCAGATCATCCA+TGG - chr1_2:38965847-38965866 Msa0069810:intron 35.0%
GTTTCTCCCAATGAAACATT+AGG + chr1_2:38965895-38965914 None:intergenic 35.0%
AACTTAAGAAAACAGCACTG+AGG - chr1_2:38965957-38965976 Msa0069810:intron 35.0%
! ACTTAAGAAAACAGCACTGA+GGG - chr1_2:38965958-38965977 Msa0069810:intron 35.0%
CATTTACGACCCTTCTATTT+CGG - chr1_2:38966071-38966090 Msa0069810:intron 35.0%
TATTGGACTTTAATGTGAGC+AGG - chr1_2:38966116-38966135 Msa0069810:intron 35.0%
! TATTTTCTGTATCCATCACC+TGG + chr1_2:38966194-38966213 None:intergenic 35.0%
AACATTGATGAACTACGAGT+AGG - chr1_2:38966225-38966244 Msa0069810:intron 35.0%
ACATTGATGAACTACGAGTA+GGG - chr1_2:38966226-38966245 Msa0069810:intron 35.0%
TGGAGATGTCCAAATACTTA+TGG - chr1_2:38966274-38966293 Msa0069810:intron 35.0%
TCACATCTGCCATAAGTATT+TGG + chr1_2:38966286-38966305 None:intergenic 35.0%
GTGAGTATATTCCCATTATC+TGG - chr1_2:38966302-38966321 Msa0069810:intron 35.0%
CTGAATAGATCCCAGATAAT+GGG + chr1_2:38966316-38966335 None:intergenic 35.0%
ACTGAATAGATCCCAGATAA+TGG + chr1_2:38966317-38966336 None:intergenic 35.0%
TACTCATGTTGACAGTTAGT+TGG + chr1_2:38966379-38966398 None:intergenic 35.0%
GATGGATGACTTTCTATTAC+CGG + chr1_2:38966430-38966449 None:intergenic 35.0%
GTAATAGAAAGTCATCCATC+TGG - chr1_2:38966430-38966449 Msa0069810:CDS 35.0%
TGCTTATATTCAAGACCAGA+TGG + chr1_2:38966448-38966467 None:intergenic 35.0%
AGTTGGAAGTCCATATTACA+TGG - chr1_2:38964881-38964900 Msa0069810:three_prime_UTR 35.0%
CACTCCAGATATCAATTTCA+GGG + chr1_2:38964935-38964954 None:intergenic 35.0%
!! TTTCTGGTGTCAATCCTTTT+TGG - chr1_2:38964979-38964998 Msa0069810:three_prime_UTR 35.0%
!! TTCTGGTGTCAATCCTTTTT+GGG - chr1_2:38964980-38964999 Msa0069810:three_prime_UTR 35.0%
!!! GCTATATTTGGCTTTTGAGT+CGG - chr1_2:38965027-38965046 Msa0069810:three_prime_UTR 35.0%
! TGTATCCTAGATGTGGATTT+TGG + chr1_2:38965070-38965089 None:intergenic 35.0%
! AAAATCCACATCTAGGATAC+AGG - chr1_2:38965069-38965088 Msa0069810:three_prime_UTR 35.0%
! TCTTAAGGCGTTAGGTTTAT+GGG + chr1_2:38965141-38965160 None:intergenic 35.0%
! TTCTTAAGGCGTTAGGTTTA+TGG + chr1_2:38965142-38965161 None:intergenic 35.0%
ACCTAACGCCTTAAGAATTT+AGG - chr1_2:38965145-38965164 Msa0069810:CDS 35.0%
! ACCTAAATTCTTAAGGCGTT+AGG + chr1_2:38965149-38965168 None:intergenic 35.0%
AGAAACCATACAAGTGAGTT+GGG + chr1_2:38965184-38965203 None:intergenic 35.0%
AAAATATGTGCGCCTCTATT+AGG + chr1_2:38965247-38965266 None:intergenic 35.0%
! ATTACAACACCCTTTCAAGT+AGG + chr1_2:38965312-38965331 None:intergenic 35.0%
CATCCACATAAGAAAGATCA+TGG + chr1_2:38965352-38965371 None:intergenic 35.0%
CTTTCTTATGTGGATGAAGA+TGG - chr1_2:38965356-38965375 Msa0069810:intron 35.0%
!! AGATGGTATTTTTGTGCTTG+TGG - chr1_2:38965373-38965392 Msa0069810:intron 35.0%
TTAAAATGCAGAAACTGAGC+AGG - chr1_2:38965577-38965596 Msa0069810:intron 35.0%
TAAAATGCAGAAACTGAGCA+GGG - chr1_2:38965578-38965597 Msa0069810:intron 35.0%
TTCGCATTATCAGAAACCTT+TGG + chr1_2:38965656-38965675 None:intergenic 35.0%
GATCAAGCATCTTCTTAACA+AGG + chr1_2:38965682-38965701 None:intergenic 35.0%
AACTAAATGCAGATCATCCA+TGG - chr1_2:38965847-38965866 Msa0069810:intron 35.0%
GTTTCTCCCAATGAAACATT+AGG + chr1_2:38965895-38965914 None:intergenic 35.0%
AACTTAAGAAAACAGCACTG+AGG - chr1_2:38965957-38965976 Msa0069810:intron 35.0%
! ACTTAAGAAAACAGCACTGA+GGG - chr1_2:38965958-38965977 Msa0069810:intron 35.0%
CATTTACGACCCTTCTATTT+CGG - chr1_2:38966071-38966090 Msa0069810:intron 35.0%
TATTGGACTTTAATGTGAGC+AGG - chr1_2:38966116-38966135 Msa0069810:intron 35.0%
! TATTTTCTGTATCCATCACC+TGG + chr1_2:38966194-38966213 None:intergenic 35.0%
AACATTGATGAACTACGAGT+AGG - chr1_2:38966225-38966244 Msa0069810:intron 35.0%
ACATTGATGAACTACGAGTA+GGG - chr1_2:38966226-38966245 Msa0069810:intron 35.0%
TGGAGATGTCCAAATACTTA+TGG - chr1_2:38966274-38966293 Msa0069810:intron 35.0%
TCACATCTGCCATAAGTATT+TGG + chr1_2:38966286-38966305 None:intergenic 35.0%
GTGAGTATATTCCCATTATC+TGG - chr1_2:38966302-38966321 Msa0069810:intron 35.0%
CTGAATAGATCCCAGATAAT+GGG + chr1_2:38966316-38966335 None:intergenic 35.0%
ACTGAATAGATCCCAGATAA+TGG + chr1_2:38966317-38966336 None:intergenic 35.0%
TACTCATGTTGACAGTTAGT+TGG + chr1_2:38966379-38966398 None:intergenic 35.0%
GATGGATGACTTTCTATTAC+CGG + chr1_2:38966430-38966449 None:intergenic 35.0%
GTAATAGAAAGTCATCCATC+TGG - chr1_2:38966430-38966449 Msa0069810:CDS 35.0%
TGCTTATATTCAAGACCAGA+TGG + chr1_2:38966448-38966467 None:intergenic 35.0%
ATGGCCCTGAAATTGATATC+TGG - chr1_2:38964928-38964947 Msa0069810:three_prime_UTR 40.0%
GCACTCCAGATATCAATTTC+AGG + chr1_2:38964936-38964955 None:intergenic 40.0%
! GAAATTGATATCTGGAGTGC+TGG - chr1_2:38964936-38964955 Msa0069810:three_prime_UTR 40.0%
AAAAACCAACCTGCCCAAAA+AGG + chr1_2:38964996-38965015 None:intergenic 40.0%
ACCAACCAAAATCCACATCT+AGG - chr1_2:38965062-38965081 Msa0069810:three_prime_UTR 40.0%
!! TCCTAGATGTGGATTTTGGT+TGG + chr1_2:38965066-38965085 None:intergenic 40.0%
CATAACCTGTATCCTAGATG+TGG + chr1_2:38965077-38965096 None:intergenic 40.0%
AGGATACAGGTTATGTAGCA+AGG - chr1_2:38965082-38965101 Msa0069810:three_prime_UTR 40.0%
GGATACAGGTTATGTAGCAA+GGG - chr1_2:38965083-38965102 Msa0069810:three_prime_UTR 40.0%
TGGGTCCTCTCACTTATAAA+AGG + chr1_2:38965122-38965141 None:intergenic 40.0%
GAGAAACCATACAAGTGAGT+TGG + chr1_2:38965185-38965204 None:intergenic 40.0%
TTGACTTTACAAGGGTTCCA+TGG - chr1_2:38965630-38965649 Msa0069810:intron 40.0%
TTATCAGAAACCTTTGGCCA+TGG + chr1_2:38965650-38965669 None:intergenic 40.0%
TTCTTTGCATTCTGCAACCA+TGG + chr1_2:38965867-38965886 None:intergenic 40.0%
TCTCCCAATGAAACATTAGG+AGG + chr1_2:38965892-38965911 None:intergenic 40.0%
CGAAATAGAAGGGTCGTAAA+TGG + chr1_2:38966073-38966092 None:intergenic 40.0%
TAGAATAACAGAGGGATTCC+AGG - chr1_2:38966173-38966192 Msa0069810:intron 40.0%
AGTATTTGGACATCTCCATC+AGG + chr1_2:38966272-38966291 None:intergenic 40.0%
ATGGCCCTGAAATTGATATC+TGG - chr1_2:38964928-38964947 Msa0069810:three_prime_UTR 40.0%
GCACTCCAGATATCAATTTC+AGG + chr1_2:38964936-38964955 None:intergenic 40.0%
! GAAATTGATATCTGGAGTGC+TGG - chr1_2:38964936-38964955 Msa0069810:three_prime_UTR 40.0%
AAAAACCAACCTGCCCAAAA+AGG + chr1_2:38964996-38965015 None:intergenic 40.0%
ACCAACCAAAATCCACATCT+AGG - chr1_2:38965062-38965081 Msa0069810:three_prime_UTR 40.0%
!! TCCTAGATGTGGATTTTGGT+TGG + chr1_2:38965066-38965085 None:intergenic 40.0%
CATAACCTGTATCCTAGATG+TGG + chr1_2:38965077-38965096 None:intergenic 40.0%
AGGATACAGGTTATGTAGCA+AGG - chr1_2:38965082-38965101 Msa0069810:three_prime_UTR 40.0%
GGATACAGGTTATGTAGCAA+GGG - chr1_2:38965083-38965102 Msa0069810:three_prime_UTR 40.0%
TGGGTCCTCTCACTTATAAA+AGG + chr1_2:38965122-38965141 None:intergenic 40.0%
GAGAAACCATACAAGTGAGT+TGG + chr1_2:38965185-38965204 None:intergenic 40.0%
TTGACTTTACAAGGGTTCCA+TGG - chr1_2:38965630-38965649 Msa0069810:intron 40.0%
TTATCAGAAACCTTTGGCCA+TGG + chr1_2:38965650-38965669 None:intergenic 40.0%
TTCTTTGCATTCTGCAACCA+TGG + chr1_2:38965867-38965886 None:intergenic 40.0%
TCTCCCAATGAAACATTAGG+AGG + chr1_2:38965892-38965911 None:intergenic 40.0%
CGAAATAGAAGGGTCGTAAA+TGG + chr1_2:38966073-38966092 None:intergenic 40.0%
TAGAATAACAGAGGGATTCC+AGG - chr1_2:38966173-38966192 Msa0069810:intron 40.0%
AGTATTTGGACATCTCCATC+AGG + chr1_2:38966272-38966291 None:intergenic 40.0%
ACTTCAGGGGCCATGTAATA+TGG + chr1_2:38964894-38964913 None:intergenic 45.0%
!! TCAATCCTTTTTGGGCAGGT+TGG - chr1_2:38964988-38965007 Msa0069810:three_prime_UTR 45.0%
GTTATGTAGCAAGGGTAGTG+AGG - chr1_2:38965091-38965110 Msa0069810:three_prime_UTR 45.0%
TGATGCCCAACTCACTTGTA+TGG - chr1_2:38965176-38965195 Msa0069810:CDS 45.0%
!! CTTACTGCACAGGAAGTGTT+AGG - chr1_2:38965719-38965738 Msa0069810:CDS 45.0%
GAAAATTGTGTGAGCCTTGC+TGG + chr1_2:38965926-38965945 None:intergenic 45.0%
ACTACGAGTAGGGTTAAGCT+AGG - chr1_2:38966236-38966255 Msa0069810:intron 45.0%
CTAGGTCACCAAATTCCTGA+TGG - chr1_2:38966254-38966273 Msa0069810:intron 45.0%
GGACATCTCCATCAGGAATT+TGG + chr1_2:38966265-38966284 None:intergenic 45.0%
! TCAGTTTGTTCCACAGTCGA+TGG - chr1_2:38966332-38966351 Msa0069810:intron 45.0%
! ATTTCCACATCCATCGACTG+TGG + chr1_2:38966345-38966364 None:intergenic 45.0%
ACTTCAGGGGCCATGTAATA+TGG + chr1_2:38964894-38964913 None:intergenic 45.0%
!! TCAATCCTTTTTGGGCAGGT+TGG - chr1_2:38964988-38965007 Msa0069810:three_prime_UTR 45.0%
GTTATGTAGCAAGGGTAGTG+AGG - chr1_2:38965091-38965110 Msa0069810:three_prime_UTR 45.0%
TGATGCCCAACTCACTTGTA+TGG - chr1_2:38965176-38965195 Msa0069810:CDS 45.0%
!! CTTACTGCACAGGAAGTGTT+AGG - chr1_2:38965719-38965738 Msa0069810:CDS 45.0%
GAAAATTGTGTGAGCCTTGC+TGG + chr1_2:38965926-38965945 None:intergenic 45.0%
ACTACGAGTAGGGTTAAGCT+AGG - chr1_2:38966236-38966255 Msa0069810:intron 45.0%
CTAGGTCACCAAATTCCTGA+TGG - chr1_2:38966254-38966273 Msa0069810:intron 45.0%
GGACATCTCCATCAGGAATT+TGG + chr1_2:38966265-38966284 None:intergenic 45.0%
! TCAGTTTGTTCCACAGTCGA+TGG - chr1_2:38966332-38966351 Msa0069810:intron 45.0%
! ATTTCCACATCCATCGACTG+TGG + chr1_2:38966345-38966364 None:intergenic 45.0%
!!! TGTTTTTTTTTTTTTTTAAT+CGG - chr1_2:38966018-38966037 Msa0069810:intron 5.0%
!!! TTTATTTTATTTTTCTATAT+TGG - chr1_2:38966099-38966118 Msa0069810:intron 5.0%
!!! TGTTTTTTTTTTTTTTTAAT+CGG - chr1_2:38966018-38966037 Msa0069810:intron 5.0%
!!! TTTATTTTATTTTTCTATAT+TGG - chr1_2:38966099-38966118 Msa0069810:intron 5.0%
!! GGTGTCAATCCTTTTTGGGC+AGG - chr1_2:38964984-38965003 Msa0069810:three_prime_UTR 50.0%
TGGTTTCTCTGAGCCCAATG+TGG - chr1_2:38965196-38965215 Msa0069810:CDS 50.0%
CTCTCCTCGTGACCTAATAG+AGG - chr1_2:38965232-38965251 Msa0069810:intron 50.0%
TACAAGGGTTCCATGGCCAA+AGG - chr1_2:38965637-38965656 Msa0069810:CDS 50.0%
ACACTTCCTGTGCAGTAAGC+CGG + chr1_2:38965718-38965737 None:intergenic 50.0%
AACAGAGGGATTCCAGGTGA+TGG - chr1_2:38966179-38966198 Msa0069810:intron 50.0%
TGTTCCACAGTCGATGGATG+TGG - chr1_2:38966338-38966357 Msa0069810:intron 50.0%
!! GGTGTCAATCCTTTTTGGGC+AGG - chr1_2:38964984-38965003 Msa0069810:three_prime_UTR 50.0%
TGGTTTCTCTGAGCCCAATG+TGG - chr1_2:38965196-38965215 Msa0069810:CDS 50.0%
CTCTCCTCGTGACCTAATAG+AGG - chr1_2:38965232-38965251 Msa0069810:intron 50.0%
TACAAGGGTTCCATGGCCAA+AGG - chr1_2:38965637-38965656 Msa0069810:CDS 50.0%
ACACTTCCTGTGCAGTAAGC+CGG + chr1_2:38965718-38965737 None:intergenic 50.0%
AACAGAGGGATTCCAGGTGA+TGG - chr1_2:38966179-38966198 Msa0069810:intron 50.0%
TGTTCCACAGTCGATGGATG+TGG - chr1_2:38966338-38966357 Msa0069810:intron 50.0%
CTCAGGGGATCGTCCACATT+GGG + chr1_2:38965212-38965231 None:intergenic 55.0%
TAGGTCACGAGGAGAGCTCA+GGG + chr1_2:38965228-38965247 None:intergenic 55.0%
TTAGGTCACGAGGAGAGCTC+AGG + chr1_2:38965229-38965248 None:intergenic 55.0%
TGCGCCTCTATTAGGTCACG+AGG + chr1_2:38965239-38965258 None:intergenic 55.0%
TTGATCCTGACCCAAAGCGC+CGG - chr1_2:38965696-38965715 Msa0069810:CDS 55.0%
AGAAACAGTCCGAGCCAGCA+AGG - chr1_2:38965909-38965928 Msa0069810:intron 55.0%
! TTGTGTGAGCCTTGCTGGCT+CGG + chr1_2:38965921-38965940 None:intergenic 55.0%
CTCAGGGGATCGTCCACATT+GGG + chr1_2:38965212-38965231 None:intergenic 55.0%
TAGGTCACGAGGAGAGCTCA+GGG + chr1_2:38965228-38965247 None:intergenic 55.0%
TTAGGTCACGAGGAGAGCTC+AGG + chr1_2:38965229-38965248 None:intergenic 55.0%
TGCGCCTCTATTAGGTCACG+AGG + chr1_2:38965239-38965258 None:intergenic 55.0%
TTGATCCTGACCCAAAGCGC+CGG - chr1_2:38965696-38965715 Msa0069810:CDS 55.0%
AGAAACAGTCCGAGCCAGCA+AGG - chr1_2:38965909-38965928 Msa0069810:intron 55.0%
! TTGTGTGAGCCTTGCTGGCT+CGG + chr1_2:38965921-38965940 None:intergenic 55.0%
GCTCAGGGGATCGTCCACAT+TGG + chr1_2:38965213-38965232 None:intergenic 60.0%
AGGTCACGAGGAGAGCTCAG+GGG + chr1_2:38965227-38965246 None:intergenic 60.0%
GTGCAGTAAGCCGGCGCTTT+GGG + chr1_2:38965709-38965728 None:intergenic 60.0%
TGTGCAGTAAGCCGGCGCTT+TGG + chr1_2:38965710-38965729 None:intergenic 60.0%
!! AAAGCGCCGGCTTACTGCAC+AGG - chr1_2:38965709-38965728 Msa0069810:CDS 60.0%
GCTCAGGGGATCGTCCACAT+TGG + chr1_2:38965213-38965232 None:intergenic 60.0%
AGGTCACGAGGAGAGCTCAG+GGG + chr1_2:38965227-38965246 None:intergenic 60.0%
GTGCAGTAAGCCGGCGCTTT+GGG + chr1_2:38965709-38965728 None:intergenic 60.0%
TGTGCAGTAAGCCGGCGCTT+TGG + chr1_2:38965710-38965729 None:intergenic 60.0%
!! AAAGCGCCGGCTTACTGCAC+AGG - chr1_2:38965709-38965728 Msa0069810:CDS 60.0%
! GTAAGCCGGCGCTTTGGGTC+AGG + chr1_2:38965704-38965723 None:intergenic 65.0%
! GTAAGCCGGCGCTTTGGGTC+AGG + chr1_2:38965704-38965723 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 38964864 38966510 38964864 ID=Msa0069810;Name=Msa0069810
chr1_2 mRNA 38964864 38966510 38964864 ID=Msa0069810-mRNA-1;Parent=Msa0069810;Name=Msa0069810-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0|0.33|0.25|1|1|0.75|4|253|172
chr1_2 exon 38964864 38965236 38964864 ID=Msa0069810-mRNA-1:exon:12149;Parent=Msa0069810-mRNA-1
chr1_2 exon 38965395 38965498 38965395 ID=Msa0069810-mRNA-1:exon:12148;Parent=Msa0069810-mRNA-1
chr1_2 exon 38965634 38965786 38965634 ID=Msa0069810-mRNA-1:exon:12147;Parent=Msa0069810-mRNA-1
chr1_2 exon 38966369 38966510 38966369 ID=Msa0069810-mRNA-1:exon:12146;Parent=Msa0069810-mRNA-1
chr1_2 CDS 38966369 38966510 38966369 ID=Msa0069810-mRNA-1:cds;Parent=Msa0069810-mRNA-1
chr1_2 CDS 38965634 38965786 38965634 ID=Msa0069810-mRNA-1:cds;Parent=Msa0069810-mRNA-1
chr1_2 CDS 38965395 38965498 38965395 ID=Msa0069810-mRNA-1:cds;Parent=Msa0069810-mRNA-1
chr1_2 CDS 38965117 38965236 38965117 ID=Msa0069810-mRNA-1:cds;Parent=Msa0069810-mRNA-1
chr1_2 three_prime_UTR 38964864 38965116 38964864 ID=Msa0069810-mRNA-1:three_prime_utr;Parent=Msa0069810-mRNA-1
Gene Sequence

>Msa0069810

GAAAGATTTAACGAGATAGTTGGAAGTCCATATTACATGGCCCCTGAAGTATTAAAAAGAAATTATGGCCCTGAAATTGATATCTGGAGTGCTGGAGTTATTCTTTACATCTTACTTTCTGGTGTCAATCCTTTTTGGGCAGAAACTGAGCAGGGAGTTGCTCAAGCAATTTTAAGATCTTTTATTGACTTTACAAGGGTTCCATGGCCAAAGGTTTCTGATAATGCGAAAGACCTTGTTAAGAAGATGCTTGATCCTGACCCAAAGCGCCGGCTTACTGCACAGGAAGTGTTAGAATGCAAAGAAATCCTCCTAATGTTTCATTGGGAGAAACAGTCCGAGCCAGCAAGGCTCACACAATTTTCTGTAATGAACAAACTTAAGAAAACAGCACTGAGGGTGATTGCAGAGCATTTATCTGCAGAAGAAGTTGTTAGAATAACAGAGGGATTCCAGGTGATGGATACAGAAAATAAAGGAAAAATCAACATTGATGAACTACGAGTAGGGTTAAGCTAG
Protein sequence

>Msa0069810

ERFNEIVGSPYYMAPEVLKRNYGPEIDIWSAGVILYILLSGVNPFWAETEQGVAQAILRSFIDFTRVPWPKVSDNAKDLVKKMLDPDPKRRLTAQEVLECKEILLMFHWEKQSEPARLTQFSVMNKLKKTALRVIAEHLSAEEVVRITEGFQVMDTENKGKINIDELRVGLS*