AlfalfaGEDB | Msa0070240

M. sativa cultivar zhongmu-4 / Msa0070240

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF12799.10

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0070240	sp\|Q9FG24\|SRF2_ARATH	55.672	670	283	7	15	682	77	734	0.0	675

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0070240	A0A072VI12	96.413	669	24	0	15	683	38	706	0.0	1335

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0070240	MtrunA17_Chr1g0174841	93.137	408	15	1	289	683	4	411	0.0	778
Msa0070240	MtrunA17_Chr7g0258451	58.089	649	207	10	39	683	70	657	0.0	693
Msa0070240	MtrunA17_Chr1g0174851	86.667	255	10	1	37	291	57	287	3.54e-153	445
Msa0070240	MtrunA17_Chr2g0289161	41.038	636	350	8	16	647	92	706	8.63e-145	439
Msa0070240	MtrunA17_Chr4g0000081	36.991	638	358	11	16	642	76	680	5.59e-126	389
Msa0070240	MtrunA17_Chr2g0281501	35.168	654	332	13	38	640	101	713	4.71e-103	330
Msa0070240	MtrunA17_Chr8g0345471	44.845	388	190	6	277	655	330	702	4.47e-97	314
Msa0070240	MtrunA17_Chr2g0323941	48.161	299	148	5	346	642	477	770	9.48e-84	280
Msa0070240	MtrunA17_Chr2g0323941	39.394	165	100	0	18	182	91	255	1.58e-26	115
Msa0070240	MtrunA17_Chr4g0022431	48.161	299	149	4	346	642	539	833	3.05e-82	278

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0070240	AT5G06820.1	55.672	670	283	7	15	682	77	734	0.0	675
Msa0070240	AT4G22130.1	41.536	638	330	11	16	647	80	680	8.92e-146	441
Msa0070240	AT1G53730.1	37.351	672	379	12	15	673	77	719	2.77e-131	404
Msa0070240	AT1G53730.2	37.444	673	378	13	15	673	77	720	1.91e-130	402
Msa0070240	AT3G14350.2	38.794	647	360	10	15	647	40	664	3.54e-128	395
Msa0070240	AT4G22130.2	41.146	576	296	11	78	647	1	539	1.38e-127	389
Msa0070240	AT3G14350.1	38.794	647	360	10	15	647	77	701	1.90e-127	394
Msa0070240	AT1G78980.1	35.780	654	345	13	15	642	74	678	1.11e-123	384
Msa0070240	AT3G14350.3	36.434	645	350	11	15	647	77	673	2.21e-109	346
Msa0070240	AT3G13065.1	35.748	635	367	12	15	636	77	683	9.93e-108	342

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Find 166 sgRNAs with CRISPR-Local

Find 305 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCACTGACCAATACTA+CGG	0.554285	1_2:+40295858	Msa0070240:CDS
AAAAGAGATGCAGCATTGAA+AGG	0.557350	1_2:-40295088	None:intergenic
AAAAGTACTACCTTGTTATC+TGG	0.290155	1_2:-40295307	None:intergenic
AAACAGAAGAAGAAACGAAT+TGG	0.427030	1_2:+40294407	Msa0070240:CDS
AAAGAGACAAATACACCGGA+AGG	0.627195	1_2:+40295179	Msa0070240:CDS
AAAGGTTACTGTTTGGAGCA+TGG	0.495712	1_2:+40295519	Msa0070240:CDS
AAGAAACGAATTGGTCCTGG+AGG	0.659195	1_2:+40294416	Msa0070240:CDS
AAGAAACTTACAATCTATCA+AGG	0.465920	1_2:-40293845	None:intergenic
AAGAAGAAACGAATTGGTCC+TGG	0.535051	1_2:+40294413	Msa0070240:CDS
AAGACTACTAACCATAGGTT+TGG	0.448952	1_2:-40294167	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TACTAGTTACTTCCATATTC+TGG	+	chr1_2:40292853-40292872	Msa0070240:intron	30.0%
TCACTGATAAAACCAGAATA+TGG	-	chr1_2:40292868-40292887	None:intergenic	30.0%
TAAGTATATAGGCTTGATAG+AGG	+	chr1_2:40293127-40293146	Msa0070240:intron	30.0%
AAGTATATAGGCTTGATAGA+GGG	+	chr1_2:40293128-40293147	Msa0070240:intron	30.0%
TAAAGCAAGTCATCAATAAC+TGG	-	chr1_2:40293182-40293201	None:intergenic	30.0%
TTGGTCCATATAAGAAATTG+TGG	-	chr1_2:40293293-40293312	None:intergenic	30.0%
TAGAATTGAGAAGCCAAAAA+AGG	+	chr1_2:40293580-40293599	Msa0070240:intron	30.0%
CAATCTATCAAGGTTTATCA+AGG	-	chr1_2:40293838-40293857	None:intergenic	30.0%
AAATAAAGGAAACAGGATGA+GGG	-	chr1_2:40293882-40293901	None:intergenic	30.0%
ATATCCAACAAAGAAATTGC+AGG	-	chr1_2:40294198-40294217	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	40292670	40297028	40292670	ID=Msa0070240;Name=Msa0070240
chr1_2	mRNA	40292670	40297028	40292670	ID=Msa0070240-mRNA-1;Parent=Msa0070240;Name=Msa0070240-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0\|0\|0\|1\|1\|1\|14\|0\|683
chr1_2	exon	40292670	40292782	40292670	ID=Msa0070240-mRNA-1:exon:12321;Parent=Msa0070240-mRNA-1
chr1_2	exon	40292885	40292950	40292885	ID=Msa0070240-mRNA-1:exon:12322;Parent=Msa0070240-mRNA-1
chr1_2	exon	40293032	40293103	40293032	ID=Msa0070240-mRNA-1:exon:12323;Parent=Msa0070240-mRNA-1
chr1_2	exon	40293281	40293352	40293281	ID=Msa0070240-mRNA-1:exon:12324;Parent=Msa0070240-mRNA-1
chr1_2	exon	40293785	40293856	40293785	ID=Msa0070240-mRNA-1:exon:12325;Parent=Msa0070240-mRNA-1
chr1_2	exon	40293973	40294038	40293973	ID=Msa0070240-mRNA-1:exon:12326;Parent=Msa0070240-mRNA-1
chr1_2	exon	40294112	40294177	40294112	ID=Msa0070240-mRNA-1:exon:12327;Parent=Msa0070240-mRNA-1
chr1_2	exon	40294262	40294599	40294262	ID=Msa0070240-mRNA-1:exon:12328;Parent=Msa0070240-mRNA-1
chr1_2	exon	40295035	40295318	40295035	ID=Msa0070240-mRNA-1:exon:12329;Parent=Msa0070240-mRNA-1
chr1_2	exon	40295405	40295670	40295405	ID=Msa0070240-mRNA-1:exon:12330;Parent=Msa0070240-mRNA-1
chr1_2	exon	40295744	40295891	40295744	ID=Msa0070240-mRNA-1:exon:12331;Parent=Msa0070240-mRNA-1
chr1_2	exon	40296303	40296442	40296303	ID=Msa0070240-mRNA-1:exon:12332;Parent=Msa0070240-mRNA-1
chr1_2	exon	40296531	40296687	40296531	ID=Msa0070240-mRNA-1:exon:12333;Parent=Msa0070240-mRNA-1
chr1_2	exon	40296837	40297028	40296837	ID=Msa0070240-mRNA-1:exon:12334;Parent=Msa0070240-mRNA-1
chr1_2	CDS	40292670	40292782	40292670	ID=Msa0070240-mRNA-1:cds;Parent=Msa0070240-mRNA-1
chr1_2	CDS	40292885	40292950	40292885	ID=Msa0070240-mRNA-1:cds;Parent=Msa0070240-mRNA-1
chr1_2	CDS	40293032	40293103	40293032	ID=Msa0070240-mRNA-1:cds;Parent=Msa0070240-mRNA-1
chr1_2	CDS	40293281	40293352	40293281	ID=Msa0070240-mRNA-1:cds;Parent=Msa0070240-mRNA-1
chr1_2	CDS	40293785	40293856	40293785	ID=Msa0070240-mRNA-1:cds;Parent=Msa0070240-mRNA-1
chr1_2	CDS	40293973	40294038	40293973	ID=Msa0070240-mRNA-1:cds;Parent=Msa0070240-mRNA-1
chr1_2	CDS	40294112	40294177	40294112	ID=Msa0070240-mRNA-1:cds;Parent=Msa0070240-mRNA-1
chr1_2	CDS	40294262	40294599	40294262	ID=Msa0070240-mRNA-1:cds;Parent=Msa0070240-mRNA-1
chr1_2	CDS	40295035	40295318	40295035	ID=Msa0070240-mRNA-1:cds;Parent=Msa0070240-mRNA-1
chr1_2	CDS	40295405	40295670	40295405	ID=Msa0070240-mRNA-1:cds;Parent=Msa0070240-mRNA-1
chr1_2	CDS	40295744	40295891	40295744	ID=Msa0070240-mRNA-1:cds;Parent=Msa0070240-mRNA-1
chr1_2	CDS	40296303	40296442	40296303	ID=Msa0070240-mRNA-1:cds;Parent=Msa0070240-mRNA-1
chr1_2	CDS	40296531	40296687	40296531	ID=Msa0070240-mRNA-1:cds;Parent=Msa0070240-mRNA-1
chr1_2	CDS	40296837	40297028	40296837	ID=Msa0070240-mRNA-1:cds;Parent=Msa0070240-mRNA-1

Gene Sequence

>Msa0070240

ATGCGACTAATAAATGTTATACTTTCTCTGTACTCCTGCAGCAAAATTCAAGGATTGAACCTCACTGGATCTCTTGGAGCCGCGCTGTATAATCTACAAAATTTGAAGATATTTGATGTCAGTTCCAACAGCATAATGGGTGAAATTCCATATGGATTACCCCCCAATGCCACACATATAAACATGGCTTGCAACTATTTCAGCGAAAGTATCCCTCATTCATTATCAAACATGAAAAAACTAAGGCATCTGAATTTAAGCCACAATTTCTTATATGGACCAATTGGCAATGTGTTCACGGGCTTAGATAATCTCAAAGAAATGGACCTTTCTTATAATAATTTCACTGGAGATCTGCCAAGTTCATTTGGTTCCTTGATAAACCTTGATAGATTGTTCCTGCAGCATAACAGATTTACTGGATCAGTCACATACCTGGCTGAGCTTCCACTCATTGATTTGAACATTCAAGAAAATCTGTTTAGTGGCATTCTCCCACAACATTTTCAGTCCATTCCAAACCTATGGATTGGAAGCAATATGTTCCATGCAGCGGACGGCTCTCCTCCTTGGGGATTTCCTTTGGACAATGTACCACTTGAACACAATATCAGTCGCCCACCCACAACCCAGGCAAATGCCATCGAGAATTTTGCTCCTCCTAATGCAAGAAAACAGAAGAAGAAACGAATTGGTCCTGGAGGAATAGCTTTTATGGTTGGTGGGGGAACATTATTGGTAACAGGATTTGCGCTCTTCATTGCGATCCGTTTGAATAAAATTCACACAGAGAGACAAAAGAGCTTCGTCTTCGTAAGCAGCCGCCATAGTCCACTTCCTTCACATCCAATCAGTGCAGCCAATGAAATAACAACAAGACGTTTTTCTACGGCACAAGATGATAGCCTGCAAATCCCACCTTTCAATGCTGCATCTCTTTTAGATCCAAGGCGATTACCTTCCCAGAACCATAAAAGAATGATGGAAACAAAAAGAAGAAGTTTTTCTGAAAGAGACAAATACACCGGAAGGACGAAGGTTTACACAGTAGCTGAGGTTCAGTTGGTTACTAACAATTTCAGTGAAGACAACCTTCTGGGAGTAGGCTCTCTTGGCCCTGTTTACAGAGCTGAGTTACCAGATAACAAGGTTTTGGCTGTGAAGACTATCCAAATGGCAGGTTTGTCTTTCAGTGAAGAGGAAAAGTTCTTAGACGTGGTCTGTACTGCTTCCCGTCTGAAGCATCCCAACATTGTTGCACTTAAAGGTTACTGTTTGGAGCATGGGCAACATCTTCTTGTCTATGACTATGTCAGAAATTTAACTCTAGATGATGCTCTACACAGTGCAGCATTCAAACCTTTATCTTGGGGCCTTCGTCTACGAATTGCTCTAGGTGTTGCACAAGCTATAGACTATCTGCACTCCACGTTCTCCCCTCCTGTCACTCATGGCAACTTGAAGGCTGCCAATATTCTACTGGATGAAAACCTGATGCCTCGTGTTTCCGACTGTGGCTTGGCTATTTTAAAACCACTGACCAATACTACGGCCAAGATTCGGGCTTCTGAGATTGCTATTAGAGATTCTGGGTACAATTCACCTGAGCATGGCCAACTGGGAGCTTGCTGCACAAAGAGCGACGTCTTTGCCTTTGGGGTGCTGCTTTTGGAGCTGTTGTCAGGAAGAAAACCTTTCGAAAGTTTTATGAGAAAGGAAGAGCAGTATCTAGCAAAATGGGCTTCATCAAGGCTTCATGATAACGAGAGTTTGGAGCAGATGGTGGATCCGGCAATTAGAAGAACATTCTCATCTAAAGCTCTTTCTCGTTATGCTGATATCATTTCTCTATGCACTCAGCCTGTAAAGGAATTCAGACCTCCAATGTCTGAAATTGTGGACTCTCTTGTATCTTTTATGCAAAGGCTCAATGTTTCAAAGAGTGCTGGTGGTGTAGCAGATGGAATTGAACTTGACCCATTTGAGAGATCTTTTCGTACAACCACCTCCCGCTTTATGCCTTCACCATCATTGAGCTATGTATCTGTTTGA

Protein sequence

>Msa0070240

MRLINVILSLYSCSKIQGLNLTGSLGAALYNLQNLKIFDVSSNSIMGEIPYGLPPNATHINMACNYFSESIPHSLSNMKKLRHLNLSHNFLYGPIGNVFTGLDNLKEMDLSYNNFTGDLPSSFGSLINLDRLFLQHNRFTGSVTYLAELPLIDLNIQENLFSGILPQHFQSIPNLWIGSNMFHAADGSPPWGFPLDNVPLEHNISRPPTTQANAIENFAPPNARKQKKKRIGPGGIAFMVGGGTLLVTGFALFIAIRLNKIHTERQKSFVFVSSRHSPLPSHPISAANEITTRRFSTAQDDSLQIPPFNAASLLDPRRLPSQNHKRMMETKRRSFSERDKYTGRTKVYTVAEVQLVTNNFSEDNLLGVGSLGPVYRAELPDNKVLAVKTIQMAGLSFSEEEKFLDVVCTASRLKHPNIVALKGYCLEHGQHLLVYDYVRNLTLDDALHSAAFKPLSWGLRLRIALGVAQAIDYLHSTFSPPVTHGNLKAANILLDENLMPRVSDCGLAILKPLTNTTAKIRASEIAIRDSGYNSPEHGQLGACCTKSDVFAFGVLLLELLSGRKPFESFMRKEEQYLAKWASSRLHDNESLEQMVDPAIRRTFSSKALSRYADIISLCTQPVKEFRPPMSEIVDSLVSFMQRLNVSKSAGGVADGIELDPFERSFRTTTSRFMPSPSLSYVSV*