Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0070290 | KEH41673.1 | 86.707 | 331 | 34 | 2 | 1 | 329 | 1 | 323 | 0.0 | 569 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0070290 | A0A072VJQ5 | 86.707 | 331 | 34 | 2 | 1 | 329 | 1 | 323 | 0.0 | 569 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0070290 | TF | NAC |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0070290 | MtrunA17_Chr1g0174911 | 86.707 | 331 | 34 | 2 | 1 | 329 | 1 | 323 | 0.0 | 569 |
| Msa0070290 | MtrunA17_Chr1g0168571 | 57.880 | 349 | 101 | 11 | 1 | 328 | 1 | 324 | 2.15e-117 | 342 |
| Msa0070290 | MtrunA17_Chr7g0274971 | 60.000 | 205 | 55 | 5 | 1 | 183 | 1 | 200 | 2.94e-76 | 233 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 55 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAAGAATCCTTGGGATATT+TGG | 0.040443 | 1_2:+40416781 | Msa0070290:CDS |
| CCACCATTTGATTCGTTTCT+TGG | 0.076491 | 1_2:-40417435 | None:intergenic |
| TAACTCTTCATGAAACTTAT+TGG | 0.168233 | 1_2:-40418450 | None:intergenic |
| GTTTCATGAAGAGTTATTAT+TGG | 0.203680 | 1_2:+40418457 | Msa0070290:CDS |
| TTCAAGAATGGTGATGTAAT+TGG | 0.213249 | 1_2:-40416739 | None:intergenic |
| AAATATCCCAAGGATTCTTT+AGG | 0.262491 | 1_2:-40416779 | None:intergenic |
| CCAAGAGAGACAACCATTCT+TGG | 0.271875 | 1_2:+40417531 | Msa0070290:CDS |
| AGTGGTAGATTTCTTCTCTA+AGG | 0.296212 | 1_2:-40416865 | None:intergenic |
| AACTCTTCATGAAACTTATT+GGG | 0.303213 | 1_2:-40418449 | None:intergenic |
| TCAAAAGTAGTTCGTTCTAT+TGG | 0.321604 | 1_2:+40416891 | Msa0070290:CDS |
| AAAGAATCCTTGGGATATTT+GGG | 0.338135 | 1_2:+40416782 | Msa0070290:CDS |
| TGGGATATTTGGGAAGAGTT+TGG | 0.341365 | 1_2:+40416792 | Msa0070290:CDS |
| ATTCTTGAATACGATTTGTT+TGG | 0.353129 | 1_2:+40416753 | Msa0070290:CDS |
| CAGGTTGAACTATTTGATTT+TGG | 0.356930 | 1_2:-40418253 | None:intergenic |
| GTAGTTCGTTCTATTGGAAT+TGG | 0.365191 | 1_2:+40416897 | Msa0070290:CDS |
| ATCTTTGATAAGAAATCCTT+TGG | 0.365896 | 1_2:+40417067 | Msa0070290:CDS |
| TCTCAATTCTTCTTCAAGTA+AGG | 0.366602 | 1_2:+40416644 | Msa0070290:CDS |
| AATTGGGAAGAGATTTGTTA+TGG | 0.367059 | 1_2:-40416722 | None:intergenic |
| AATATCCCAAGGATTCTTTA+GGG | 0.371252 | 1_2:-40416778 | None:intergenic |
| TGGACACAATGGCACAAATA+TGG | 0.371907 | 1_2:+40417455 | Msa0070290:CDS |
| TGTAGGACTTACAAATTTGT+TGG | 0.396611 | 1_2:-40417565 | None:intergenic |
| TCAAGAATGGTGATGTAATT+GGG | 0.404508 | 1_2:-40416738 | None:intergenic |
| CCAAGAATGGTTGTCTCTCT+TGG | 0.410667 | 1_2:-40417531 | None:intergenic |
| TTAAGGTAGTGAAGAAATAT+AGG | 0.411633 | 1_2:-40416842 | None:intergenic |
| GAAAGAAAGACCATTGTTCC+TGG | 0.417462 | 1_2:+40417232 | Msa0070290:CDS |
| TTGGTACCCTAAAGAATCCT+TGG | 0.424102 | 1_2:+40416772 | Msa0070290:CDS |
| TCATCATCATCTTCATTGTC+AGG | 0.425138 | 1_2:-40418272 | None:intergenic |
| AATCAAGTAACTTACAGATA+TGG | 0.426262 | 1_2:-40417269 | None:intergenic |
| AGATTTCTTCTCTAAGGTTA+AGG | 0.432842 | 1_2:-40416859 | None:intergenic |
| TGGTACCCTAAAGAATCCTT+GGG | 0.489046 | 1_2:+40416773 | Msa0070290:CDS |
| ATGCTTGTTAGAAGAGGAAG+AGG | 0.495031 | 1_2:+40418415 | Msa0070290:CDS |
| GAACCAAGAAACGAATCAAA+TGG | 0.503929 | 1_2:+40417432 | Msa0070290:CDS |
| GTTCTATTGGAATTGGTGCA+TGG | 0.508402 | 1_2:+40416904 | Msa0070290:CDS |
| AAACAAATCGTATTCAAGAA+TGG | 0.519788 | 1_2:-40416751 | None:intergenic |
| GGCTGCTTCGAGTCCAAGAA+TGG | 0.535306 | 1_2:-40417544 | None:intergenic |
| TTCTTATCAAAGATTTGTCA+AGG | 0.536486 | 1_2:-40417058 | None:intergenic |
| GAGCTGATAGAGATGAATGA+AGG | 0.539230 | 1_2:+40418392 | Msa0070290:CDS |
| TGAAGGATGCTTGTTAGAAG+AGG | 0.541017 | 1_2:+40418409 | Msa0070290:CDS |
| ATGGTGGTTTCTGCACGTCC+AGG | 0.545124 | 1_2:-40417250 | None:intergenic |
| TTCTATTGGAATTGGTGCAT+GGG | 0.546914 | 1_2:+40416905 | Msa0070290:CDS |
| GCAAGATCCATGCACCATCA+TGG | 0.566204 | 1_2:-40417025 | None:intergenic |
| ATGATGATGCTGGTATGTCT+TGG | 0.577942 | 1_2:+40418351 | Msa0070290:CDS |
| AACTCTTCCCAAATATCCCA+AGG | 0.585203 | 1_2:-40416789 | None:intergenic |
| CAAGTAACTTACAGATATGG+TGG | 0.592493 | 1_2:-40417266 | None:intergenic |
| TTCTGCACGTCCAGGAACAA+TGG | 0.595867 | 1_2:-40417242 | None:intergenic |
| GAATCAAATGGTGGACACAA+TGG | 0.599759 | 1_2:+40417444 | Msa0070290:CDS |
| GACAATGAAGATGATGATGA+TGG | 0.618553 | 1_2:+40418275 | Msa0070290:CDS |
| ATTGGAATTGGTGCATGGGA+AGG | 0.630255 | 1_2:+40416909 | Msa0070290:CDS |
| AACGAAGAAGATGATGATGC+TGG | 0.632021 | 1_2:+40418341 | Msa0070290:CDS |
| GCACTTACCATGATGGTGCA+TGG | 0.633065 | 1_2:+40417018 | Msa0070290:CDS |
| AATAGTGGCACTTACCATGA+TGG | 0.645072 | 1_2:+40417011 | Msa0070290:CDS |
| TGGGAAGGTGAAGAAGACAC+TGG | 0.669846 | 1_2:+40416924 | Msa0070290:CDS |
| CCAAGAAACGAATCAAATGG+TGG | 0.672770 | 1_2:+40417435 | Msa0070290:CDS |
| TGATGATGGTGAATGCATTG+TGG | 0.673578 | 1_2:+40418289 | Msa0070290:CDS |
| ATTGTGGACAAAGAAAATGA+TGG | 0.682219 | 1_2:+40418305 | Msa0070290:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACAAAATCAAATTATAAAT+AGG | - | chr1_2:40417141-40417160 | None:intergenic | 10.0% |
| !! | TACAAAATCAAATTATAAAT+AGG | - | chr1_2:40417141-40417160 | None:intergenic | 10.0% |
| !!! | TTGTATCTTTTTTCTTTTTT+AGG | + | chr1_2:40417156-40417175 | Msa0070290:intron | 15.0% |
| !!! | CATTTTTAAGTATTCAATAA+TGG | + | chr1_2:40417765-40417784 | Msa0070290:intron | 15.0% |
| !!! | TCCTATTTTTATCTTATTTT+TGG | + | chr1_2:40417792-40417811 | Msa0070290:intron | 15.0% |
| !!! | CCTATTTTTATCTTATTTTT+GGG | + | chr1_2:40417793-40417812 | Msa0070290:intron | 15.0% |
| !!! | TCAAATGTTTTTCATAAAAT+AGG | - | chr1_2:40417977-40417996 | None:intergenic | 15.0% |
| !!! | TTGTATCTTTTTTCTTTTTT+AGG | + | chr1_2:40417156-40417175 | Msa0070290:intron | 15.0% |
| !!! | CATTTTTAAGTATTCAATAA+TGG | + | chr1_2:40417765-40417784 | Msa0070290:intron | 15.0% |
| !!! | TCCTATTTTTATCTTATTTT+TGG | + | chr1_2:40417792-40417811 | Msa0070290:intron | 15.0% |
| !!! | CCTATTTTTATCTTATTTTT+GGG | + | chr1_2:40417793-40417812 | Msa0070290:intron | 15.0% |
| !!! | TCAAATGTTTTTCATAAAAT+AGG | - | chr1_2:40417977-40417996 | None:intergenic | 15.0% |
| !! | CTTGATTCAAGATTTAATAA+TGG | + | chr1_2:40417302-40417321 | Msa0070290:intron | 20.0% |
| !! | ATGTTAAATAGAAAAACAAC+CGG | - | chr1_2:40417342-40417361 | None:intergenic | 20.0% |
| !! | AAAAAGATGTGAGAAATATT+TGG | + | chr1_2:40417508-40417527 | Msa0070290:CDS | 20.0% |
| !! | AGAAAAACAACAATAAATGT+AGG | - | chr1_2:40417585-40417604 | None:intergenic | 20.0% |
| !! | AACATATTAACACAATTATC+TGG | + | chr1_2:40417673-40417692 | Msa0070290:intron | 20.0% |
| !! | CCCAAAAATAAGATAAAAAT+AGG | - | chr1_2:40417796-40417815 | None:intergenic | 20.0% |
| !!! | TGTTTTCATCTCAATAAAAA+TGG | - | chr1_2:40417947-40417966 | None:intergenic | 20.0% |
| !!! | AACTTCACATTTTTTTTTCT+GGG | + | chr1_2:40418047-40418066 | Msa0070290:intron | 20.0% |
| !! | AATTAGAATACAAAATGAGT+TGG | - | chr1_2:40418174-40418193 | None:intergenic | 20.0% |
| !! | CTTGATTCAAGATTTAATAA+TGG | + | chr1_2:40417302-40417321 | Msa0070290:intron | 20.0% |
| !! | ATGTTAAATAGAAAAACAAC+CGG | - | chr1_2:40417342-40417361 | None:intergenic | 20.0% |
| !! | AAAAAGATGTGAGAAATATT+TGG | + | chr1_2:40417508-40417527 | Msa0070290:CDS | 20.0% |
| !! | AGAAAAACAACAATAAATGT+AGG | - | chr1_2:40417585-40417604 | None:intergenic | 20.0% |
| !! | AACATATTAACACAATTATC+TGG | + | chr1_2:40417673-40417692 | Msa0070290:intron | 20.0% |
| !! | CCCAAAAATAAGATAAAAAT+AGG | - | chr1_2:40417796-40417815 | None:intergenic | 20.0% |
| !!! | TGTTTTCATCTCAATAAAAA+TGG | - | chr1_2:40417947-40417966 | None:intergenic | 20.0% |
| !!! | AACTTCACATTTTTTTTTCT+GGG | + | chr1_2:40418047-40418066 | Msa0070290:intron | 20.0% |
| !! | AATTAGAATACAAAATGAGT+TGG | - | chr1_2:40418174-40418193 | None:intergenic | 20.0% |
| !! | TGTTATGGATTTTATTGTAG+AGG | - | chr1_2:40416710-40416729 | None:intergenic | 25.0% |
| ! | AAACAAATCGTATTCAAGAA+TGG | - | chr1_2:40416754-40416773 | None:intergenic | 25.0% |
| !! | ATTCTTGAATACGATTTGTT+TGG | + | chr1_2:40416753-40416772 | Msa0070290:CDS | 25.0% |
| ! | TTAAGGTAGTGAAGAAATAT+AGG | - | chr1_2:40416845-40416864 | None:intergenic | 25.0% |
| ! | TTCTTATCAAAGATTTGTCA+AGG | - | chr1_2:40417061-40417080 | None:intergenic | 25.0% |
| ! | ATCTTTGATAAGAAATCCTT+TGG | + | chr1_2:40417067-40417086 | Msa0070290:CDS | 25.0% |
| !! | TCTGCATAGAACATAATTTT+TGG | - | chr1_2:40417182-40417201 | None:intergenic | 25.0% |
| ! | AATCAAGTAACTTACAGATA+TGG | - | chr1_2:40417272-40417291 | None:intergenic | 25.0% |
| !! | CATTCTTGATTTGATATGTA+GGG | + | chr1_2:40417372-40417391 | Msa0070290:intron | 25.0% |
| ! | AATGATAGTAACATACTAAC+TGG | - | chr1_2:40417749-40417768 | None:intergenic | 25.0% |
| !!! | GAACTTCACATTTTTTTTTC+TGG | + | chr1_2:40418046-40418065 | Msa0070290:intron | 25.0% |
| ! | CTTCAAACAAGTATAGTATT+AGG | - | chr1_2:40418073-40418092 | None:intergenic | 25.0% |
| ! | AACTCTTCATGAAACTTATT+GGG | - | chr1_2:40418452-40418471 | None:intergenic | 25.0% |
| ! | TAACTCTTCATGAAACTTAT+TGG | - | chr1_2:40418453-40418472 | None:intergenic | 25.0% |
| ! | GTTTCATGAAGAGTTATTAT+TGG | + | chr1_2:40418457-40418476 | Msa0070290:CDS | 25.0% |
| !! | TGTTATGGATTTTATTGTAG+AGG | - | chr1_2:40416710-40416729 | None:intergenic | 25.0% |
| ! | AAACAAATCGTATTCAAGAA+TGG | - | chr1_2:40416754-40416773 | None:intergenic | 25.0% |
| !! | ATTCTTGAATACGATTTGTT+TGG | + | chr1_2:40416753-40416772 | Msa0070290:CDS | 25.0% |
| ! | TTAAGGTAGTGAAGAAATAT+AGG | - | chr1_2:40416845-40416864 | None:intergenic | 25.0% |
| ! | TTCTTATCAAAGATTTGTCA+AGG | - | chr1_2:40417061-40417080 | None:intergenic | 25.0% |
| ! | ATCTTTGATAAGAAATCCTT+TGG | + | chr1_2:40417067-40417086 | Msa0070290:CDS | 25.0% |
| !! | TCTGCATAGAACATAATTTT+TGG | - | chr1_2:40417182-40417201 | None:intergenic | 25.0% |
| ! | AATCAAGTAACTTACAGATA+TGG | - | chr1_2:40417272-40417291 | None:intergenic | 25.0% |
| !! | CATTCTTGATTTGATATGTA+GGG | + | chr1_2:40417372-40417391 | Msa0070290:intron | 25.0% |
| ! | AATGATAGTAACATACTAAC+TGG | - | chr1_2:40417749-40417768 | None:intergenic | 25.0% |
| !!! | GAACTTCACATTTTTTTTTC+TGG | + | chr1_2:40418046-40418065 | Msa0070290:intron | 25.0% |
| ! | CTTCAAACAAGTATAGTATT+AGG | - | chr1_2:40418073-40418092 | None:intergenic | 25.0% |
| ! | AACTCTTCATGAAACTTATT+GGG | - | chr1_2:40418452-40418471 | None:intergenic | 25.0% |
| ! | TAACTCTTCATGAAACTTAT+TGG | - | chr1_2:40418453-40418472 | None:intergenic | 25.0% |
| ! | GTTTCATGAAGAGTTATTAT+TGG | + | chr1_2:40418457-40418476 | Msa0070290:CDS | 25.0% |
| TCTCAATTCTTCTTCAAGTA+AGG | + | chr1_2:40416644-40416663 | Msa0070290:CDS | 30.0% | |
| ! | GGATTTTATTGTAGAGGAAT+CGG | - | chr1_2:40416704-40416723 | None:intergenic | 30.0% |
| !! | AATTGGGAAGAGATTTGTTA+TGG | - | chr1_2:40416725-40416744 | None:intergenic | 30.0% |
| ! | TCAAGAATGGTGATGTAATT+GGG | - | chr1_2:40416741-40416760 | None:intergenic | 30.0% |
| ! | TTCAAGAATGGTGATGTAAT+TGG | - | chr1_2:40416742-40416761 | None:intergenic | 30.0% |
| AATATCCCAAGGATTCTTTA+GGG | - | chr1_2:40416781-40416800 | None:intergenic | 30.0% | |
| AAATATCCCAAGGATTCTTT+AGG | - | chr1_2:40416782-40416801 | None:intergenic | 30.0% | |
| TAAAGAATCCTTGGGATATT+TGG | + | chr1_2:40416781-40416800 | Msa0070290:CDS | 30.0% | |
| AAAGAATCCTTGGGATATTT+GGG | + | chr1_2:40416782-40416801 | Msa0070290:CDS | 30.0% | |
| !! | AGATTTCTTCTCTAAGGTTA+AGG | - | chr1_2:40416862-40416881 | None:intergenic | 30.0% |
| TCAAAAGTAGTTCGTTCTAT+TGG | + | chr1_2:40416891-40416910 | Msa0070290:CDS | 30.0% | |
| AAAAACAAGAACCAAATCCT+TGG | + | chr1_2:40416963-40416982 | Msa0070290:CDS | 30.0% | |
| !!! | ATTTTTTCACACCAAGGATT+TGG | - | chr1_2:40416977-40416996 | None:intergenic | 30.0% |
| !!! | GAAAACATTTTTTCACACCA+AGG | - | chr1_2:40416983-40417002 | None:intergenic | 30.0% |
| !! | TGTTTTCGATTTGAGAATAG+TGG | + | chr1_2:40416996-40417015 | Msa0070290:CDS | 30.0% |
| TGTATCATATTGCTTACCAA+AGG | - | chr1_2:40417086-40417105 | None:intergenic | 30.0% | |
| AATGGATACATTTCAAGATC+CGG | + | chr1_2:40417320-40417339 | Msa0070290:intron | 30.0% | |
| ! | GCATTCTTGATTTGATATGT+AGG | + | chr1_2:40417371-40417390 | Msa0070290:intron | 30.0% |
| TGTAGGACTTACAAATTTGT+TGG | - | chr1_2:40417568-40417587 | None:intergenic | 30.0% | |
| !!! | AACGAGTCTAGTTTTTTGAT+GGG | - | chr1_2:40417860-40417879 | None:intergenic | 30.0% |
| !!! | TAACGAGTCTAGTTTTTTGA+TGG | - | chr1_2:40417861-40417880 | None:intergenic | 30.0% |
| TGAACATGAAAAGAAGGTTA+AGG | - | chr1_2:40418002-40418021 | None:intergenic | 30.0% | |
| ! | ACCTTCTTTTCATGTTCAAT+AGG | + | chr1_2:40418004-40418023 | Msa0070290:intron | 30.0% |
| ACCTATTGAACATGAAAAGA+AGG | - | chr1_2:40418008-40418027 | None:intergenic | 30.0% | |
| ATGTGAAGTTCGACTATATT+TGG | - | chr1_2:40418037-40418056 | None:intergenic | 30.0% | |
| TTTAATCACATCCATGTCAA+AGG | + | chr1_2:40418104-40418123 | Msa0070290:intron | 30.0% | |
| !! | CAGGTTGAACTATTTGATTT+TGG | - | chr1_2:40418256-40418275 | None:intergenic | 30.0% |
| ATTGTGGACAAAGAAAATGA+TGG | + | chr1_2:40418305-40418324 | Msa0070290:CDS | 30.0% | |
| TCTCAATTCTTCTTCAAGTA+AGG | + | chr1_2:40416644-40416663 | Msa0070290:CDS | 30.0% | |
| ! | GGATTTTATTGTAGAGGAAT+CGG | - | chr1_2:40416704-40416723 | None:intergenic | 30.0% |
| !! | AATTGGGAAGAGATTTGTTA+TGG | - | chr1_2:40416725-40416744 | None:intergenic | 30.0% |
| ! | TCAAGAATGGTGATGTAATT+GGG | - | chr1_2:40416741-40416760 | None:intergenic | 30.0% |
| ! | TTCAAGAATGGTGATGTAAT+TGG | - | chr1_2:40416742-40416761 | None:intergenic | 30.0% |
| AATATCCCAAGGATTCTTTA+GGG | - | chr1_2:40416781-40416800 | None:intergenic | 30.0% | |
| AAATATCCCAAGGATTCTTT+AGG | - | chr1_2:40416782-40416801 | None:intergenic | 30.0% | |
| TAAAGAATCCTTGGGATATT+TGG | + | chr1_2:40416781-40416800 | Msa0070290:CDS | 30.0% | |
| AAAGAATCCTTGGGATATTT+GGG | + | chr1_2:40416782-40416801 | Msa0070290:CDS | 30.0% | |
| !! | AGATTTCTTCTCTAAGGTTA+AGG | - | chr1_2:40416862-40416881 | None:intergenic | 30.0% |
| TCAAAAGTAGTTCGTTCTAT+TGG | + | chr1_2:40416891-40416910 | Msa0070290:CDS | 30.0% | |
| AAAAACAAGAACCAAATCCT+TGG | + | chr1_2:40416963-40416982 | Msa0070290:CDS | 30.0% | |
| !!! | ATTTTTTCACACCAAGGATT+TGG | - | chr1_2:40416977-40416996 | None:intergenic | 30.0% |
| !!! | GAAAACATTTTTTCACACCA+AGG | - | chr1_2:40416983-40417002 | None:intergenic | 30.0% |
| !! | TGTTTTCGATTTGAGAATAG+TGG | + | chr1_2:40416996-40417015 | Msa0070290:CDS | 30.0% |
| TGTATCATATTGCTTACCAA+AGG | - | chr1_2:40417086-40417105 | None:intergenic | 30.0% | |
| AATGGATACATTTCAAGATC+CGG | + | chr1_2:40417320-40417339 | Msa0070290:intron | 30.0% | |
| ! | GCATTCTTGATTTGATATGT+AGG | + | chr1_2:40417371-40417390 | Msa0070290:intron | 30.0% |
| TGTAGGACTTACAAATTTGT+TGG | - | chr1_2:40417568-40417587 | None:intergenic | 30.0% | |
| !!! | AACGAGTCTAGTTTTTTGAT+GGG | - | chr1_2:40417860-40417879 | None:intergenic | 30.0% |
| !!! | TAACGAGTCTAGTTTTTTGA+TGG | - | chr1_2:40417861-40417880 | None:intergenic | 30.0% |
| TGAACATGAAAAGAAGGTTA+AGG | - | chr1_2:40418002-40418021 | None:intergenic | 30.0% | |
| ! | ACCTTCTTTTCATGTTCAAT+AGG | + | chr1_2:40418004-40418023 | Msa0070290:intron | 30.0% |
| ACCTATTGAACATGAAAAGA+AGG | - | chr1_2:40418008-40418027 | None:intergenic | 30.0% | |
| ATGTGAAGTTCGACTATATT+TGG | - | chr1_2:40418037-40418056 | None:intergenic | 30.0% | |
| TTTAATCACATCCATGTCAA+AGG | + | chr1_2:40418104-40418123 | Msa0070290:intron | 30.0% | |
| !! | CAGGTTGAACTATTTGATTT+TGG | - | chr1_2:40418256-40418275 | None:intergenic | 30.0% |
| ATTGTGGACAAAGAAAATGA+TGG | + | chr1_2:40418305-40418324 | Msa0070290:CDS | 30.0% | |
| ! | TTTTTCACAATATGAGCGAG+AGG | - | chr1_2:40416820-40416839 | None:intergenic | 35.0% |
| AGTGGTAGATTTCTTCTCTA+AGG | - | chr1_2:40416868-40416887 | None:intergenic | 35.0% | |
| GTAGTTCGTTCTATTGGAAT+TGG | + | chr1_2:40416897-40416916 | Msa0070290:CDS | 35.0% | |
| TTCTATTGGAATTGGTGCAT+GGG | + | chr1_2:40416905-40416924 | Msa0070290:CDS | 35.0% | |
| CAAGTAACTTACAGATATGG+TGG | - | chr1_2:40417269-40417288 | None:intergenic | 35.0% | |
| GAACCAAGAAACGAATCAAA+TGG | + | chr1_2:40417432-40417451 | Msa0070290:CDS | 35.0% | |
| CATAGTGTAATCCTTTGACA+TGG | - | chr1_2:40418118-40418137 | None:intergenic | 35.0% | |
| ! | AGAATGCAAGAGCACAATAA+GGG | - | chr1_2:40418213-40418232 | None:intergenic | 35.0% |
| !! | GCTCTTGCATTCTCATTTTT+AGG | + | chr1_2:40418220-40418239 | Msa0070290:intron | 35.0% |
| TCATCATCATCTTCATTGTC+AGG | - | chr1_2:40418275-40418294 | None:intergenic | 35.0% | |
| ! | GACAATGAAGATGATGATGA+TGG | + | chr1_2:40418275-40418294 | Msa0070290:CDS | 35.0% |
| ! | TTTTTCACAATATGAGCGAG+AGG | - | chr1_2:40416820-40416839 | None:intergenic | 35.0% |
| AGTGGTAGATTTCTTCTCTA+AGG | - | chr1_2:40416868-40416887 | None:intergenic | 35.0% | |
| GTAGTTCGTTCTATTGGAAT+TGG | + | chr1_2:40416897-40416916 | Msa0070290:CDS | 35.0% | |
| TTCTATTGGAATTGGTGCAT+GGG | + | chr1_2:40416905-40416924 | Msa0070290:CDS | 35.0% | |
| CAAGTAACTTACAGATATGG+TGG | - | chr1_2:40417269-40417288 | None:intergenic | 35.0% | |
| GAACCAAGAAACGAATCAAA+TGG | + | chr1_2:40417432-40417451 | Msa0070290:CDS | 35.0% | |
| CATAGTGTAATCCTTTGACA+TGG | - | chr1_2:40418118-40418137 | None:intergenic | 35.0% | |
| ! | AGAATGCAAGAGCACAATAA+GGG | - | chr1_2:40418213-40418232 | None:intergenic | 35.0% |
| !! | GCTCTTGCATTCTCATTTTT+AGG | + | chr1_2:40418220-40418239 | Msa0070290:intron | 35.0% |
| TCATCATCATCTTCATTGTC+AGG | - | chr1_2:40418275-40418294 | None:intergenic | 35.0% | |
| ! | GACAATGAAGATGATGATGA+TGG | + | chr1_2:40418275-40418294 | Msa0070290:CDS | 35.0% |
| TTGGTACCCTAAAGAATCCT+TGG | + | chr1_2:40416772-40416791 | Msa0070290:CDS | 40.0% | |
| TGGTACCCTAAAGAATCCTT+GGG | + | chr1_2:40416773-40416792 | Msa0070290:CDS | 40.0% | |
| AACTCTTCCCAAATATCCCA+AGG | - | chr1_2:40416792-40416811 | None:intergenic | 40.0% | |
| TGGGATATTTGGGAAGAGTT+TGG | + | chr1_2:40416792-40416811 | Msa0070290:CDS | 40.0% | |
| !! | ACGAACTACTTTTGAGCTAG+TGG | - | chr1_2:40416886-40416905 | None:intergenic | 40.0% |
| GTTCTATTGGAATTGGTGCA+TGG | + | chr1_2:40416904-40416923 | Msa0070290:CDS | 40.0% | |
| AATAGTGGCACTTACCATGA+TGG | + | chr1_2:40417011-40417030 | Msa0070290:CDS | 40.0% | |
| GAAAGAAAGACCATTGTTCC+TGG | + | chr1_2:40417232-40417251 | Msa0070290:CDS | 40.0% | |
| ! | CCACCATTTGATTCGTTTCT+TGG | - | chr1_2:40417438-40417457 | None:intergenic | 40.0% |
| CCAAGAAACGAATCAAATGG+TGG | + | chr1_2:40417435-40417454 | Msa0070290:CDS | 40.0% | |
| !! | GAATCAAATGGTGGACACAA+TGG | + | chr1_2:40417444-40417463 | Msa0070290:CDS | 40.0% |
| TGGACACAATGGCACAAATA+TGG | + | chr1_2:40417455-40417474 | Msa0070290:CDS | 40.0% | |
| ! | GAGAATGCAAGAGCACAATA+AGG | - | chr1_2:40418214-40418233 | None:intergenic | 40.0% |
| !! | TGATGATGGTGAATGCATTG+TGG | + | chr1_2:40418289-40418308 | Msa0070290:CDS | 40.0% |
| ! | AACGAAGAAGATGATGATGC+TGG | + | chr1_2:40418341-40418360 | Msa0070290:CDS | 40.0% |
| ! | ATGATGATGCTGGTATGTCT+TGG | + | chr1_2:40418351-40418370 | Msa0070290:CDS | 40.0% |
| ! | TTGGCCTGAGATTTTTGCAA+AGG | + | chr1_2:40418370-40418389 | Msa0070290:CDS | 40.0% |
| AGCTCCTTTGCAAAAATCTC+AGG | - | chr1_2:40418377-40418396 | None:intergenic | 40.0% | |
| GAGCTGATAGAGATGAATGA+AGG | + | chr1_2:40418392-40418411 | Msa0070290:CDS | 40.0% | |
| ! | TGAAGGATGCTTGTTAGAAG+AGG | + | chr1_2:40418409-40418428 | Msa0070290:CDS | 40.0% |
| ! | ATGCTTGTTAGAAGAGGAAG+AGG | + | chr1_2:40418415-40418434 | Msa0070290:CDS | 40.0% |
| TTGGTACCCTAAAGAATCCT+TGG | + | chr1_2:40416772-40416791 | Msa0070290:CDS | 40.0% | |
| TGGTACCCTAAAGAATCCTT+GGG | + | chr1_2:40416773-40416792 | Msa0070290:CDS | 40.0% | |
| AACTCTTCCCAAATATCCCA+AGG | - | chr1_2:40416792-40416811 | None:intergenic | 40.0% | |
| TGGGATATTTGGGAAGAGTT+TGG | + | chr1_2:40416792-40416811 | Msa0070290:CDS | 40.0% | |
| !! | ACGAACTACTTTTGAGCTAG+TGG | - | chr1_2:40416886-40416905 | None:intergenic | 40.0% |
| GTTCTATTGGAATTGGTGCA+TGG | + | chr1_2:40416904-40416923 | Msa0070290:CDS | 40.0% | |
| AATAGTGGCACTTACCATGA+TGG | + | chr1_2:40417011-40417030 | Msa0070290:CDS | 40.0% | |
| GAAAGAAAGACCATTGTTCC+TGG | + | chr1_2:40417232-40417251 | Msa0070290:CDS | 40.0% | |
| ! | CCACCATTTGATTCGTTTCT+TGG | - | chr1_2:40417438-40417457 | None:intergenic | 40.0% |
| CCAAGAAACGAATCAAATGG+TGG | + | chr1_2:40417435-40417454 | Msa0070290:CDS | 40.0% | |
| !! | GAATCAAATGGTGGACACAA+TGG | + | chr1_2:40417444-40417463 | Msa0070290:CDS | 40.0% |
| TGGACACAATGGCACAAATA+TGG | + | chr1_2:40417455-40417474 | Msa0070290:CDS | 40.0% | |
| ! | GAGAATGCAAGAGCACAATA+AGG | - | chr1_2:40418214-40418233 | None:intergenic | 40.0% |
| !! | TGATGATGGTGAATGCATTG+TGG | + | chr1_2:40418289-40418308 | Msa0070290:CDS | 40.0% |
| ! | AACGAAGAAGATGATGATGC+TGG | + | chr1_2:40418341-40418360 | Msa0070290:CDS | 40.0% |
| ! | ATGATGATGCTGGTATGTCT+TGG | + | chr1_2:40418351-40418370 | Msa0070290:CDS | 40.0% |
| ! | TTGGCCTGAGATTTTTGCAA+AGG | + | chr1_2:40418370-40418389 | Msa0070290:CDS | 40.0% |
| AGCTCCTTTGCAAAAATCTC+AGG | - | chr1_2:40418377-40418396 | None:intergenic | 40.0% | |
| GAGCTGATAGAGATGAATGA+AGG | + | chr1_2:40418392-40418411 | Msa0070290:CDS | 40.0% | |
| ! | TGAAGGATGCTTGTTAGAAG+AGG | + | chr1_2:40418409-40418428 | Msa0070290:CDS | 40.0% |
| ! | ATGCTTGTTAGAAGAGGAAG+AGG | + | chr1_2:40418415-40418434 | Msa0070290:CDS | 40.0% |
| ATTGGAATTGGTGCATGGGA+AGG | + | chr1_2:40416909-40416928 | Msa0070290:CDS | 45.0% | |
| CCAAGAATGGTTGTCTCTCT+TGG | - | chr1_2:40417534-40417553 | None:intergenic | 45.0% | |
| CCAAGAGAGACAACCATTCT+TGG | + | chr1_2:40417531-40417550 | Msa0070290:CDS | 45.0% | |
| ATTGGAATTGGTGCATGGGA+AGG | + | chr1_2:40416909-40416928 | Msa0070290:CDS | 45.0% | |
| CCAAGAATGGTTGTCTCTCT+TGG | - | chr1_2:40417534-40417553 | None:intergenic | 45.0% | |
| CCAAGAGAGACAACCATTCT+TGG | + | chr1_2:40417531-40417550 | Msa0070290:CDS | 45.0% | |
| TGGGAAGGTGAAGAAGACAC+TGG | + | chr1_2:40416924-40416943 | Msa0070290:CDS | 50.0% | |
| ! | GCACTTACCATGATGGTGCA+TGG | + | chr1_2:40417018-40417037 | Msa0070290:CDS | 50.0% |
| GCAAGATCCATGCACCATCA+TGG | - | chr1_2:40417028-40417047 | None:intergenic | 50.0% | |
| TTCTGCACGTCCAGGAACAA+TGG | - | chr1_2:40417245-40417264 | None:intergenic | 50.0% | |
| TGGGAAGGTGAAGAAGACAC+TGG | + | chr1_2:40416924-40416943 | Msa0070290:CDS | 50.0% | |
| ! | GCACTTACCATGATGGTGCA+TGG | + | chr1_2:40417018-40417037 | Msa0070290:CDS | 50.0% |
| GCAAGATCCATGCACCATCA+TGG | - | chr1_2:40417028-40417047 | None:intergenic | 50.0% | |
| TTCTGCACGTCCAGGAACAA+TGG | - | chr1_2:40417245-40417264 | None:intergenic | 50.0% | |
| ATGGTGGTTTCTGCACGTCC+AGG | - | chr1_2:40417253-40417272 | None:intergenic | 55.0% | |
| GGCTGCTTCGAGTCCAAGAA+TGG | - | chr1_2:40417547-40417566 | None:intergenic | 55.0% | |
| ATGGTGGTTTCTGCACGTCC+AGG | - | chr1_2:40417253-40417272 | None:intergenic | 55.0% | |
| GGCTGCTTCGAGTCCAAGAA+TGG | - | chr1_2:40417547-40417566 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 40416639 | 40418499 | 40416639 | ID=Msa0070290;Name=Msa0070290 |
| chr1_2 | mRNA | 40416639 | 40418499 | 40416639 | ID=Msa0070290-mRNA-1;Parent=Msa0070290;Name=Msa0070290-mRNA-1;_AED=0.04;_eAED=0.05;_QI=0|0|0|1|1|1|4|0|329 |
| chr1_2 | exon | 40416639 | 40417088 | 40416639 | ID=Msa0070290-mRNA-1:exon:12363;Parent=Msa0070290-mRNA-1 |
| chr1_2 | exon | 40417178 | 40417276 | 40417178 | ID=Msa0070290-mRNA-1:exon:12364;Parent=Msa0070290-mRNA-1 |
| chr1_2 | exon | 40417393 | 40417575 | 40417393 | ID=Msa0070290-mRNA-1:exon:12365;Parent=Msa0070290-mRNA-1 |
| chr1_2 | exon | 40418242 | 40418499 | 40418242 | ID=Msa0070290-mRNA-1:exon:12366;Parent=Msa0070290-mRNA-1 |
| chr1_2 | CDS | 40416639 | 40417088 | 40416639 | ID=Msa0070290-mRNA-1:cds;Parent=Msa0070290-mRNA-1 |
| chr1_2 | CDS | 40417178 | 40417276 | 40417178 | ID=Msa0070290-mRNA-1:cds;Parent=Msa0070290-mRNA-1 |
| chr1_2 | CDS | 40417393 | 40417575 | 40417393 | ID=Msa0070290-mRNA-1:cds;Parent=Msa0070290-mRNA-1 |
| chr1_2 | CDS | 40418242 | 40418499 | 40418242 | ID=Msa0070290-mRNA-1:cds;Parent=Msa0070290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
