AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0070350

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0070350 MtrunA17_Chr1g0175091 94.675 338 16 2 1 338 80 415 0.0 655
Msa0070350 MtrunA17_Chr1g0175091 74.815 135 24 2 338 462 228 362 9.05e-57 197
Msa0070350 MtrunA17_Chr7g0258551 61.823 351 104 9 1 338 33 366 4.41e-125 374
Msa0070350 MtrunA17_Chr7g0258551 58.824 136 45 3 338 462 182 317 2.24e-39 148
Msa0070350 MtrunA17_Chr7g0261911 52.778 180 78 4 134 311 220 394 2.48e-53 189
Msa0070350 MtrunA17_Chr7g0261911 48.718 117 53 3 353 462 252 368 6.07e-28 117
Msa0070350 MtrunA17_Chr1g0175081 84.783 92 14 0 342 433 1 92 2.80e-48 163
Msa0070350 MtrunA17_Chr1g0175081 68.478 92 29 0 161 252 2 93 1.37e-36 132
Msa0070350 MtrunA17_Chr1g0190301 60.563 142 50 3 176 311 166 307 5.58e-48 172
Msa0070350 MtrunA17_Chr1g0190301 45.985 137 62 5 337 462 146 281 4.51e-26 110
Msa0070350 MtrunA17_Chr7g0274471 54.545 165 63 4 180 336 217 377 3.07e-47 171
Msa0070350 MtrunA17_Chr7g0274471 51.429 105 44 3 365 462 220 324 5.33e-24 105
Msa0070350 MtrunA17_Chr2g0291021 56.204 137 56 2 181 313 49 185 3.28e-46 166
Msa0070350 MtrunA17_Chr2g0291021 45.794 107 49 2 365 462 51 157 2.53e-20 92.4
Msa0070350 MtrunA17_Chr7g0254981 49.359 156 66 3 172 314 33 188 2.28e-45 162
Msa0070350 MtrunA17_Chr7g0254981 41.600 125 55 4 356 462 35 159 2.33e-21 94.7
Msa0070350 MtrunA17_Chr6g0461641 46.746 169 64 3 177 323 38 202 1.10e-38 147
Msa0070350 MtrunA17_Chr6g0461641 37.500 128 55 3 359 462 38 164 3.88e-19 90.1
Msa0070350 MtrunA17_Chr2g0321461 43.684 190 76 5 159 326 27 207 2.28e-37 143
Msa0070350 MtrunA17_Chr2g0321461 32.653 147 69 3 346 462 25 171 6.02e-17 83.2
Msa0070350 MtrunA17_Chr1g0175071 43.350 203 107 4 117 317 118 314 1.29e-35 136
Msa0070350 MtrunA17_Chr1g0175071 35.811 148 84 4 365 511 179 316 1.90e-14 74.7
Msa0070350 MtrunA17_Chr7g0242521 46.452 155 71 4 169 319 2 148 1.84e-34 130
Msa0070350 MtrunA17_Chr7g0242521 40.496 121 62 3 351 462 2 121 1.27e-16 79.7
Msa0070350 MtrunA17_Chr5g0409731 44.654 159 72 3 181 325 25 181 8.23e-34 130
Msa0070350 MtrunA17_Chr5g0409731 51.786 56 27 0 365 420 27 82 1.09e-14 75.1
Msa0070350 MtrunA17_Chr4g0042451 42.282 149 71 3 177 311 13 160 8.84e-32 126
Msa0070350 MtrunA17_Chr4g0042451 34.426 122 62 3 359 462 13 134 1.14e-15 78.6
Msa0070350 MtrunA17_Chr5g0417521 38.411 151 79 1 177 313 11 161 1.47e-31 125
Msa0070350 MtrunA17_Chr5g0417521 33.333 123 63 1 359 462 11 133 3.02e-17 83.6
Msa0070350 MtrunA17_Chr2g0290991 41.401 157 77 4 162 304 21 176 1.45e-29 119
Msa0070350 MtrunA17_Chr2g0290991 33.140 172 87 6 332 477 6 175 1.34e-15 78.2
Msa0070350 MtrunA17_Chr8g0356501 41.176 153 80 3 181 328 37 184 1.70e-29 119
Msa0070350 MtrunA17_Chr8g0356501 50.909 55 27 0 365 419 39 93 1.18e-12 69.7
Msa0070350 MtrunA17_Chr2g0310011 45.038 131 67 1 177 302 31 161 4.72e-29 118
Msa0070350 MtrunA17_Chr2g0310011 33.621 116 51 2 365 462 37 144 3.04e-13 71.6
Msa0070350 MtrunA17_Chr7g0235271 54.945 91 41 0 510 600 1 91 2.61e-28 108
Msa0070350 MtrunA17_Chr8g0362161 52.747 91 43 0 510 600 1 91 4.07e-28 108
Msa0070350 MtrunA17_Chr7g0258531 36.771 223 116 5 85 304 139 339 1.09e-27 114
Msa0070350 MtrunA17_Chr7g0258531 40.171 117 62 3 354 462 204 320 5.29e-13 70.9
Msa0070350 MtrunA17_Chr1g0197171 39.259 135 71 2 181 304 44 178 9.44e-25 104
Msa0070350 MtrunA17_Chr1g0197171 54.545 55 25 0 365 419 46 100 1.03e-13 72.0
Msa0070350 MtrunA17_Chr2g0288601 65.306 49 17 0 183 231 73 121 3.25e-15 72.8
Msa0070350 MtrunA17_Chr2g0288601 43.023 86 46 2 328 413 39 121 4.77e-14 69.3
Msa0070350 MtrunA17_Chr2g0320231 56.716 67 28 1 183 249 99 164 3.31e-15 77.8
Msa0070350 MtrunA17_Chr2g0320231 49.333 75 37 1 365 439 99 172 1.62e-13 72.4
Msa0070350 MtrunA17_Chr7g0243081 50.685 73 35 1 183 255 73 144 3.67e-15 77.4
Msa0070350 MtrunA17_Chr7g0243081 47.945 73 37 1 365 437 73 144 3.94e-13 71.2
Msa0070350 MtrunA17_Chr8g0366281 38.333 120 61 3 183 300 175 283 4.64e-15 77.0
Msa0070350 MtrunA17_Chr8g0366281 40.909 88 44 2 365 444 175 262 2.24e-11 65.9
Msa0070350 MtrunA17_Chr8g0379121 63.462 52 19 0 183 234 113 164 6.11e-15 77.4
Msa0070350 MtrunA17_Chr8g0379121 53.226 62 28 1 365 426 113 173 4.49e-13 71.6
Msa0070350 MtrunA17_Chr1g0162931 61.818 55 21 0 183 237 20 74 1.01e-14 75.1
Msa0070350 MtrunA17_Chr1g0162931 45.333 75 34 1 365 439 20 87 5.47e-12 67.0
Msa0070350 MtrunA17_Chr6g0479431 58.182 55 23 0 183 237 204 258 2.01e-14 75.1
Msa0070350 MtrunA17_Chr6g0479431 49.180 61 31 0 365 425 204 264 8.31e-12 67.4
Msa0070350 MtrunA17_Chr1g0210911 61.818 55 21 0 183 237 24 78 2.13e-14 74.7
Msa0070350 MtrunA17_Chr1g0210911 45.333 75 41 0 342 416 1 75 8.38e-12 67.0
Msa0070350 MtrunA17_Chr3g0109981 42.353 85 47 1 183 265 276 360 4.46e-14 74.7
Msa0070350 MtrunA17_Chr5g0410741 58.182 55 23 0 183 237 221 275 4.69e-14 74.3
Msa0070350 MtrunA17_Chr1g0154261 45.946 74 40 0 183 256 128 201 7.24e-14 72.8
Msa0070350 MtrunA17_Chr3g0095611 55.357 56 25 0 179 234 17 72 7.97e-14 70.9
Msa0070350 MtrunA17_Chr3g0095611 50.847 59 29 0 361 419 17 75 5.31e-12 65.5
Msa0070350 MtrunA17_Chr4g0062921 41.379 87 51 0 339 425 211 297 7.70e-13 70.9
Msa0070350 MtrunA17_Chr4g0062921 43.820 89 45 1 152 240 211 294 4.93e-12 68.2
Msa0070350 MtrunA17_Chr2g0283951 61.224 49 19 0 183 231 91 139 1.99e-12 69.3
Msa0070350 MtrunA17_Chr7g0275401 54.098 61 27 1 174 234 185 244 3.03e-12 67.8
Msa0070350 MtrunA17_Chr1g0198601 51.667 60 29 0 181 240 211 270 5.62e-12 67.8
Msa0070350 MtrunA17_Chr4g0009901 44.595 74 38 2 179 250 166 238 1.13e-11 65.9
Msa0070350 MtrunA17_Chr4g0045361 51.562 64 30 1 178 240 271 334 2.38e-11 66.2
Msa0070350 MtrunA17_Chr4g0045361 45.588 68 37 0 360 427 271 338 3.36e-11 65.5
Msa0070350 MtrunA17_Chr5g0402631 52.381 63 29 1 179 240 212 274 5.18e-11 64.7
Msa0070350 MtrunA17_Chr5g0422621 42.353 85 44 1 156 235 168 252 5.48e-11 64.7
Msa0070350 MtrunA17_Chr2g0304841 51.667 60 28 1 365 424 215 273 7.07e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0070350 AT5G06800.1 66.477 176 51 4 144 314 154 326 3.92e-67 223
Msa0070350 AT5G06800.1 58.400 125 43 3 344 462 176 297 2.28e-34 134
Msa0070350 AT5G06800.2 64.641 181 51 5 144 314 154 331 1.00e-64 217
Msa0070350 AT5G06800.2 56.154 130 43 4 344 462 176 302 3.53e-32 128
Msa0070350 AT5G29000.1 46.226 212 88 5 112 310 124 322 5.94e-49 175
Msa0070350 AT5G29000.1 42.949 156 68 6 317 462 153 297 2.48e-26 111
Msa0070350 AT5G29000.3 46.226 212 88 5 112 310 124 322 5.94e-49 175
Msa0070350 AT5G29000.3 42.949 156 68 6 317 462 153 297 2.48e-26 111
Msa0070350 AT5G29000.2 46.226 212 88 5 112 310 167 365 1.20e-48 175
Msa0070350 AT5G29000.2 42.949 156 68 6 317 462 196 340 4.37e-26 111
Msa0070350 AT4G28610.1 60.135 148 52 4 164 308 212 355 2.14e-48 174
Msa0070350 AT4G28610.1 49.600 125 51 5 346 462 212 332 2.42e-26 112
Msa0070350 AT2G01060.1 51.479 169 73 5 172 334 3 168 3.21e-48 170
Msa0070350 AT2G01060.1 43.651 126 58 4 346 462 1 122 1.12e-20 93.2
Msa0070350 AT3G04450.4 44.105 229 106 7 133 356 157 368 9.39e-48 172
Msa0070350 AT3G04450.4 43.284 134 65 4 339 462 175 307 1.63e-24 106
Msa0070350 AT3G04450.2 44.105 229 106 7 133 356 157 368 9.39e-48 172
Msa0070350 AT3G04450.2 43.284 134 65 4 339 462 175 307 1.63e-24 106
Msa0070350 AT3G04450.1 44.105 229 106 7 133 356 197 408 2.09e-47 172
Msa0070350 AT3G04450.1 43.284 134 65 4 339 462 215 347 2.56e-24 106
Msa0070350 AT3G13040.3 46.597 191 90 5 154 333 211 400 3.59e-43 161
Msa0070350 AT3G13040.3 40.141 142 65 3 341 462 211 352 4.15e-22 100
Msa0070350 AT3G13040.1 46.597 191 90 5 154 333 211 400 3.59e-43 161
Msa0070350 AT3G13040.1 40.141 142 65 3 341 462 211 352 4.15e-22 100
Msa0070350 AT3G13040.2 46.597 191 90 5 154 333 211 400 3.59e-43 161
Msa0070350 AT3G13040.2 40.141 142 65 3 341 462 211 352 4.15e-22 100
Msa0070350 AT2G20400.1 55.385 130 56 2 181 308 231 360 1.76e-39 149
Msa0070350 AT2G20400.1 48.571 105 47 2 365 462 233 337 4.87e-22 99.4
Msa0070350 AT2G20400.2 54.962 131 56 3 181 308 231 361 7.74e-38 145
Msa0070350 AT2G20400.2 48.113 106 47 3 365 462 233 338 1.68e-20 94.7
Msa0070350 AT5G18240.1 43.976 166 76 2 177 325 41 206 3.27e-37 143
Msa0070350 AT5G18240.1 38.889 126 55 3 359 462 41 166 1.85e-18 88.6
Msa0070350 AT5G18240.4 43.976 166 76 2 177 325 41 206 3.27e-37 143
Msa0070350 AT5G18240.4 38.889 126 55 3 359 462 41 166 1.85e-18 88.6
Msa0070350 AT3G04030.3 48.466 163 62 4 177 322 41 198 4.89e-36 139
Msa0070350 AT3G04030.3 37.313 134 60 4 353 462 33 166 6.15e-19 89.7
Msa0070350 AT1G69580.1 45.399 163 64 4 177 315 30 191 2.09e-35 136
Msa0070350 AT1G69580.1 35.938 128 58 2 359 462 30 157 6.35e-17 82.8
Msa0070350 AT1G69580.2 44.172 163 67 3 177 315 30 192 6.95e-35 135
Msa0070350 AT1G69580.2 35.659 129 58 2 359 462 30 158 8.63e-17 82.4
Msa0070350 AT3G24120.1 37.288 236 115 6 165 367 25 260 7.47e-35 134
Msa0070350 AT3G24120.1 34.188 117 58 2 365 462 43 159 1.00e-14 75.5
Msa0070350 AT5G06800.3 89.231 65 7 0 181 245 192 256 1.73e-34 132
Msa0070350 AT5G06800.3 66.667 84 25 1 344 427 176 256 1.03e-27 113
Msa0070350 AT5G18240.5 43.373 166 75 3 177 325 41 204 2.17e-34 135
Msa0070350 AT5G18240.5 33.493 209 107 10 359 540 41 244 6.67e-19 89.7
Msa0070350 AT4G13640.1 42.515 167 80 3 160 310 14 180 2.75e-34 132
Msa0070350 AT4G13640.1 33.333 117 59 2 365 462 39 155 7.22e-14 73.2
Msa0070350 AT3G04030.2 47.239 163 63 5 177 322 41 197 3.91e-33 131
Msa0070350 AT3G04030.2 35.821 134 61 5 353 462 33 165 2.68e-16 81.6
Msa0070350 AT3G24120.2 36.820 239 115 7 165 367 25 263 5.97e-33 129
Msa0070350 AT3G24120.2 32.558 129 68 2 365 474 43 171 1.52e-15 78.2
Msa0070350 AT1G79430.2 40.805 174 85 4 144 311 8 169 1.38e-32 129
Msa0070350 AT1G79430.2 37.037 108 58 2 365 462 36 143 2.89e-14 75.1
Msa0070350 AT4G13640.2 41.765 170 80 4 160 310 14 183 2.57e-32 127
Msa0070350 AT4G13640.2 31.783 129 69 2 365 474 39 167 1.19e-14 75.5
Msa0070350 AT5G18240.2 41.566 166 74 3 177 325 41 200 4.13e-32 128
Msa0070350 AT5G18240.2 38.889 126 55 3 359 462 41 166 1.46e-18 88.6
Msa0070350 AT5G18240.3 41.566 166 74 3 177 325 41 200 4.13e-32 128
Msa0070350 AT5G18240.3 38.889 126 55 3 359 462 41 166 1.46e-18 88.6
Msa0070350 AT5G45580.1 43.590 156 58 4 181 311 7 157 1.12e-31 124
Msa0070350 AT5G45580.1 47.619 84 32 3 365 441 9 87 4.84e-16 79.0
Msa0070350 AT5G45580.2 43.590 156 58 4 181 311 23 173 1.45e-31 124
Msa0070350 AT5G45580.2 47.619 84 32 3 365 441 25 103 6.28e-16 79.0
Msa0070350 AT3G04030.1 46.012 163 60 5 177 322 41 192 5.87e-31 125
Msa0070350 AT3G04030.1 37.313 134 60 4 353 462 33 166 5.50e-19 89.7
Msa0070350 AT2G01060.2 50.000 122 55 4 216 334 1 119 1.70e-29 117
Msa0070350 AT3G04450.3 56.667 90 33 2 152 241 215 298 1.69e-25 107
Msa0070350 AT3G04450.3 49.412 85 42 1 339 423 215 298 3.39e-20 92.4
Msa0070350 AT3G12730.1 41.135 141 73 4 181 311 23 163 8.27e-25 103
Msa0070350 AT3G12730.1 52.727 55 26 0 365 419 25 79 1.04e-13 71.6
Msa0070350 AT5G29000.4 42.553 141 60 3 112 244 167 294 9.70e-25 105
Msa0070350 AT5G29000.4 42.063 126 60 3 317 440 196 310 5.02e-21 94.7
Msa0070350 AT3G04030.5 44.094 127 49 4 213 322 1 122 4.90e-18 85.9
Msa0070350 AT1G79430.1 41.905 105 54 3 213 311 1 104 2.92e-17 83.2
Msa0070350 AT4G04605.1 55.385 65 29 0 170 234 3 67 3.10e-16 78.6
Msa0070350 AT4G04605.1 47.059 68 36 0 352 419 3 70 7.18e-12 65.9
Msa0070350 AT2G42660.1 52.239 67 32 0 179 245 48 114 1.52e-15 77.4
Msa0070350 AT2G42660.1 52.459 61 27 1 365 425 52 110 2.93e-12 67.8
Msa0070350 AT2G02060.2 49.383 81 33 1 162 234 2 82 4.37e-15 75.9
Msa0070350 AT2G02060.2 55.769 52 23 0 365 416 31 82 1.60e-11 65.5
Msa0070350 AT2G02060.1 49.383 81 33 1 162 234 2 82 4.37e-15 75.9
Msa0070350 AT2G02060.1 55.769 52 23 0 365 416 31 82 1.60e-11 65.5
Msa0070350 AT1G14600.1 61.818 55 21 0 183 237 25 79 5.29e-15 75.9
Msa0070350 AT1G14600.1 52.727 55 26 0 365 419 25 79 1.22e-11 65.9
Msa0070350 AT2G06020.1 44.737 76 41 1 162 237 68 142 5.82e-15 76.6
Msa0070350 AT2G06020.1 47.273 55 29 0 365 419 88 142 5.83e-11 64.3
Msa0070350 AT2G38300.1 53.968 63 28 1 183 245 56 117 1.55e-14 75.9
Msa0070350 AT2G38300.1 54.545 55 25 0 365 419 56 110 4.20e-12 68.2
Msa0070350 AT5G18240.6 35.385 130 61 3 213 325 1 124 2.14e-14 75.1
Msa0070350 AT5G42630.2 43.678 87 43 1 183 263 107 193 3.33e-14 72.8
Msa0070350 AT5G42630.2 46.377 69 35 1 365 431 107 175 2.47e-11 64.3
Msa0070350 AT4G17695.1 51.471 68 31 1 183 248 166 233 3.76e-14 74.3
Msa0070350 AT5G42630.1 43.678 87 43 1 183 263 107 193 5.32e-14 73.2
Msa0070350 AT5G16560.1 58.182 55 23 0 183 237 221 275 5.55e-14 74.7
Msa0070350 AT5G16560.1 45.000 80 39 1 365 439 221 300 1.64e-12 70.1
Msa0070350 AT1G32240.2 58.182 55 23 0 183 237 215 269 5.64e-14 74.3
Msa0070350 AT1G32240.1 54.098 61 28 0 183 243 215 275 6.87e-14 74.3
Msa0070350 AT2G40260.1 57.576 66 23 2 174 234 70 135 9.09e-14 73.9
Msa0070350 AT2G40260.1 47.436 78 35 2 356 428 70 146 7.53e-13 71.2
Msa0070350 AT4G04580.1 49.231 65 33 0 170 234 3 67 2.85e-13 68.6
Msa0070350 AT4G04580.1 46.154 65 35 0 352 416 3 67 4.23e-11 62.4
Msa0070350 AT3G04030.4 40.945 127 47 5 213 322 1 116 3.18e-13 71.2
Msa0070350 AT4G37180.1 62.264 53 20 0 183 235 212 264 4.15e-13 71.6
Msa0070350 AT4G37180.2 62.264 53 20 0 183 235 219 271 5.67e-13 71.2
Msa0070350 AT4G04555.1 50.746 67 28 1 173 234 1 67 3.39e-12 63.5
Msa0070350 AT5G58080.1 46.154 78 39 2 174 251 187 261 9.25e-12 68.6
Msa0070350 AT2G03500.1 53.333 60 28 0 181 240 233 292 1.22e-11 67.4
Msa0070350 AT2G03500.1 49.180 61 31 0 365 425 235 295 2.06e-11 67.0
Msa0070350 AT4G37180.3 61.224 49 19 0 183 231 212 260 9.19e-11 63.5

Find 99 sgRNAs with CRISPR-Local

Find 370 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAATTGAACACTCAGAATT+TGG 0.178780 1_2:+40659615 Msa0070350:CDS
TCAATATCTTTAGGACTAAT+TGG 0.223277 1_2:-40659661 None:intergenic
TTCTAATAAGGTTAATGATT+TGG 0.230770 1_2:+40656934 Msa0070350:CDS
TTTCCATTAGAATGAATTAA+TGG 0.240080 1_2:-40657175 None:intergenic
CCAACAATGTCAACAACTTC+TGG 0.258266 1_2:+40660980 Msa0070350:CDS
TCCATTACAAGCAGGGTTTC+CGG 0.269736 1_2:-40657414 None:intergenic
ATCAGCAATAATATAGCTTT+TGG 0.283859 1_2:-40661339 None:intergenic
CCAGAAGTTGTTGACATTGT+TGG 0.294261 1_2:-40660980 None:intergenic
TACTACTTGTCTTCTGTTGT+TGG 0.298534 1_2:-40659588 None:intergenic
CAGATGCGGAGTATGGTAAA+AGG 0.299470 1_2:-40664212 None:intergenic
TGGATCAGGTTCCTCATATC+TGG 0.299972 1_2:-40664336 None:intergenic
AGTCCATTAATTCATTCTAA+TGG 0.307810 1_2:+40657172 Msa0070350:CDS
ACTGTAACCTCAATATCTTT+AGG 0.323905 1_2:-40659670 None:intergenic
AAATTACCTTGAGCTTGTTC+TGG 0.349173 1_2:-40657955 None:intergenic
GGAAATGTCTCAACGAATTC+CGG 0.350677 1_2:+40657395 Msa0070350:CDS
CAACACCGAAAGCGATATTA+AGG 0.350678 1_2:+40657857 Msa0070350:CDS
ACTCAAAATTGTGGCTAGAT+TGG 0.356646 1_2:-40657006 None:intergenic
CCAAATTCTGAGTGTTCAAT+TGG 0.369240 1_2:-40659615 None:intergenic
ACATTTCCTGTTGACATAGT+TGG 0.376397 1_2:-40657380 None:intergenic
TAAATGCACTTGAACCCATT+TGG 0.382580 1_2:-40664356 None:intergenic
ATCAGCCTTAATATCGCTTT+CGG 0.385906 1_2:-40657862 None:intergenic
CACTTGAACCCATTTGGATC+AGG 0.392822 1_2:-40664350 None:intergenic
TCTTTCTTCACTCCTCTAGT+TGG 0.394568 1_2:-40664035 None:intergenic
GTTCTTGCAGATGCGGAGTA+TGG 0.396941 1_2:-40664219 None:intergenic
AGAACGATCGAGTTGAGGTC+TGG 0.397912 1_2:+40664237 Msa0070350:CDS
GAAAATTGAGATATCAAAAG+AGG 0.399023 1_2:-40656911 None:intergenic
CCTTTGTTAGCTTGAGTTGG+TGG 0.407089 1_2:-40664179 None:intergenic
CCACAATATGATTACCAAGT+TGG 0.422118 1_2:+40656872 Msa0070350:CDS
ATACATGGCTGAACCAGCTC+AGG 0.423615 1_2:+40661425 Msa0070350:CDS
CACTTGACGAATTCTATAGA+AGG 0.426668 1_2:+40664305 Msa0070350:CDS
GGAATTCCCTTTGTATCAAA+GGG 0.429673 1_2:+40656955 Msa0070350:CDS
GTATGCAAAAGTCTCAATAA+AGG 0.430301 1_2:+40664274 Msa0070350:CDS
ACAAACTTCTCATGAAGATC+AGG 0.435376 1_2:-40661058 None:intergenic
GAGAAATTCAGTTGTGAACC+TGG 0.441355 1_2:-40657335 None:intergenic
CTGTCTCCAACTATGTCAAC+AGG 0.441628 1_2:+40657374 Msa0070350:CDS
TCTGGAAACCCTGCTACTAA+TGG 0.446301 1_2:+40660998 Msa0070350:CDS
TACTACTTTCATTTCCAACT+TGG 0.455279 1_2:-40656886 None:intergenic
TGGAATTCCCTTTGTATCAA+AGG 0.460488 1_2:+40656954 Msa0070350:CDS
TCCGGAAACCCTGCTTGTAA+TGG 0.462303 1_2:+40657413 Msa0070350:CDS
AGTGAAGAAAGAACCACAAA+AGG 0.464215 1_2:+40664046 Msa0070350:CDS
CATCCTTTGTTAGCTTGAGT+TGG 0.467571 1_2:-40664182 None:intergenic
TATGAGGAACCTGATCCAAA+TGG 0.470012 1_2:+40664341 Msa0070350:CDS
CTGAAGTTGGTGACTCAAAA+CGG 0.487919 1_2:-40656817 None:intergenic
AAAAGCTATATTATTGCTGA+TGG 0.488564 1_2:+40661341 Msa0070350:CDS
ACTGATGAACCATTAGTAGC+AGG 0.494537 1_2:-40661007 None:intergenic
ATTGGTTTGATGTTGAATCA+AGG 0.496222 1_2:-40656988 None:intergenic
AAAATTACAGTTGCGAATAG+AGG 0.499177 1_2:+40659534 Msa0070350:CDS
CTCCAAGAAAATTCCCACAT+TGG 0.501031 1_2:-40657087 None:intergenic
CCAACTTGGTAATCATATTG+TGG 0.502891 1_2:-40656872 None:intergenic
CTAACAAATTTACCCTGAGC+TGG 0.503929 1_2:-40661438 None:intergenic
AATTAGTCCTAAAGATATTG+AGG 0.504863 1_2:+40659663 Msa0070350:CDS
CCCTGCTTGTAATGGATCAT+CGG 0.507035 1_2:+40657421 Msa0070350:CDS
GTTGAGTGTGTGAATCGCCT+TGG 0.509079 1_2:+40657494 Msa0070350:CDS
GTTGAGTGTGTGAATCGCCT+TGG 0.509079 1_2:+40661079 Msa0070350:CDS
GAACGATCGAGTTGAGGTCT+GGG 0.514347 1_2:+40664238 Msa0070350:CDS
TTATGCAACTGAAATTTGCA+TGG 0.523528 1_2:+40656844 Msa0070350:CDS
AATAGCACAAGTAAGTTTCG+TGG 0.523792 1_2:+40664073 Msa0070350:CDS
CTCGATCGTTCTTGCAGATG+CGG 0.524150 1_2:-40664226 None:intergenic
ACCGATGATCCATTACAAGC+AGG 0.527035 1_2:-40657422 None:intergenic
ATGAGGAACCTGATCCAAAT+GGG 0.530210 1_2:+40664342 Msa0070350:CDS
TAGCTGGTCATGAAGAAGCT+TGG 0.531185 1_2:-40662447 None:intergenic
GAAGGATATATACCTCTAGC+TGG 0.532966 1_2:-40662463 None:intergenic
CAAGTAAAACACGAATAAGA+TGG 0.534054 1_2:+40657447 Msa0070350:CDS
AGGATTAAGTACCAGATATG+AGG 0.549388 1_2:+40664325 Msa0070350:CDS
CAGTGGCTTGCAAATTAGAG+AGG 0.550038 1_2:+40658834 Msa0070350:intron
CTGATGAACCATTAGTAGCA+GGG 0.553912 1_2:-40661006 None:intergenic
TATGCAACTGAAATTTGCAT+GGG 0.562190 1_2:+40656845 Msa0070350:CDS
AGATGCGGAGTATGGTAAAA+GGG 0.563039 1_2:-40664211 None:intergenic
CCGATGATCCATTACAAGCA+GGG 0.564544 1_2:-40657421 None:intergenic
AATTTGACAACTCAAAATTG+TGG 0.568956 1_2:-40657015 None:intergenic
ACATGTAGTTGAAGCTGAAG+TGG 0.572149 1_2:-40662422 None:intergenic
ATATAGAATTGCGAAATACA+TGG 0.573235 1_2:+40661410 Msa0070350:CDS
AAAATTGAGATATCAAAAGA+GGG 0.579511 1_2:-40656910 None:intergenic
AACTGCAAGGAAAACAATGA+GGG 0.585248 1_2:+40664007 Msa0070350:CDS
AGCTGCAGCTAGACGTTCAG+AGG 0.587380 1_2:+40658863 Msa0070350:CDS
GAAAGCGATATTAAGGCTGA+TGG 0.589838 1_2:+40657864 Msa0070350:CDS
GAGTGTGTGAATCGCCTTGG+TGG 0.595652 1_2:+40657497 Msa0070350:CDS
GAGTGTGTGAATCGCCTTGG+TGG 0.595652 1_2:+40661082 Msa0070350:CDS
CAACTCAAGCTAACAAAGGA+TGG 0.597454 1_2:+40664183 Msa0070350:CDS
TTAAGGCTGATGGATTCAGA+TGG 0.601499 1_2:+40657874 Msa0070350:CDS
CAAGATCTTCAAAAGAAGAG+AGG 0.607179 1_2:+40664124 Msa0070350:CDS
CTGCAAGAACGATCGAGTTG+AGG 0.614240 1_2:+40664232 Msa0070350:CDS
AATCCAATAAAATCCAATGT+GGG 0.615499 1_2:+40657074 Msa0070350:CDS
AAATCCAATAAAATCCAATG+TGG 0.616777 1_2:+40657073 Msa0070350:CDS
AAACTGCAAGGAAAACAATG+AGG 0.618328 1_2:+40664006 Msa0070350:CDS
CCACCAACTCAAGCTAACAA+AGG 0.630887 1_2:+40664179 Msa0070350:CDS
TTATTGCTGATGGAATCAGA+TGG 0.633783 1_2:+40661351 Msa0070350:CDS
GCGTCTTCATGAACAACTAG+AGG 0.636358 1_2:+40658885 Msa0070350:CDS
AGGTCTGGGATCACACTAAG+TGG 0.640423 1_2:+40664252 Msa0070350:CDS
CAAGTAATACAAGAATAACA+TGG 0.643229 1_2:+40661032 Msa0070350:CDS
TATATGCCAGAACAAGCTCA+AGG 0.643937 1_2:+40657949 Msa0070350:CDS
GCTTCTTCATGACCAGCTAG+AGG 0.656294 1_2:+40662451 Msa0070350:CDS
TGAGAACTAAGCAAACTGCA+AGG 0.664347 1_2:+40663994 Msa0070350:CDS
TACATGGCTGAACCAGCTCA+GGG 0.669201 1_2:+40661426 Msa0070350:CDS
ACTGCAAGGAAAACAATGAG+GGG 0.690146 1_2:+40664008 Msa0070350:CDS
ACTTACTCTCGGCACCACCA+AGG 0.691778 1_2:-40657511 None:intergenic
TCTTACTCTCGGCACCACCA+AGG 0.691778 1_2:-40661096 None:intergenic
CAGTTGCGAATAGAGGAACA+AGG 0.704497 1_2:+40659541 Msa0070350:CDS
ATGAGGGGAAGACCAACTAG+AGG 0.722545 1_2:+40664023 Msa0070350:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATAGAAGTAAATTATA+GGG - chr1_2:40657236-40657255 None:intergenic 10.0%
!! AAAAAATAGAAGTAAATTAT+AGG - chr1_2:40657237-40657256 None:intergenic 10.0%
!!! TTTTTTCTATTTTCATTTAT+TGG + chr1_2:40657251-40657270 Msa0070350:intron 10.0%
!! AATTATTAAATGATAAATAG+AGG + chr1_2:40658507-40658526 Msa0070350:intron 10.0%
!! TATTTATCATTTAATAATTC+AGG - chr1_2:40658506-40658525 None:intergenic 10.0%
!! AATTATTAAATGATAAATAG+AGG + chr1_2:40658507-40658526 Msa0070350:intron 10.0%
!!! TATTTACATTTTTTTTTTGT+GGG - chr1_2:40661277-40661296 None:intergenic 10.0%
!!! ATATTTACATTTTTTTTTTG+TGG - chr1_2:40661278-40661297 None:intergenic 10.0%
!! AATAGTTAATAAATATGATA+AGG - chr1_2:40662739-40662758 None:intergenic 10.0%
!! TAAATTAACCAATTATAATT+TGG - chr1_2:40662836-40662855 None:intergenic 10.0%
!!! AATGGATTTATAATTATAAT+TGG - chr1_2:40663829-40663848 None:intergenic 10.0%
!!! TTCTTGATTGTTTATTTTAT+CGG - chr1_2:40657580-40657599 None:intergenic 15.0%
!! ATTCACAAAATAATGTATAA+AGG - chr1_2:40658926-40658945 None:intergenic 15.0%
!!! ATTATGAATACTTTGAAATA+CGG - chr1_2:40659075-40659094 None:intergenic 15.0%
!! ATATTTAATAAACAATCACT+CGG + chr1_2:40659183-40659202 Msa0070350:intron 15.0%
!! AAAAAAAAAATTAAGGGTAA+AGG + chr1_2:40659252-40659271 Msa0070350:intron 15.0%
!!! ATACTTTTATTTACAGAATT+TGG - chr1_2:40659753-40659772 None:intergenic 15.0%
!! AAAATTAACCAATTATAATG+TGG - chr1_2:40659817-40659836 None:intergenic 15.0%
!!! TAATTCAAACTATTTAACTT+AGG - chr1_2:40660763-40660782 None:intergenic 15.0%
!! AAACACATATTTATTTAAAG+TGG + chr1_2:40662773-40662792 Msa0070350:intron 15.0%
!! ATTGTTATAATACTTACAAT+TGG + chr1_2:40663598-40663617 Msa0070350:intron 15.0%
!! TTCTGTAAAAATTCTTTAAT+TGG - chr1_2:40663959-40663978 None:intergenic 15.0%
!!! AATTAAAGAATTTTTACAGA+AGG + chr1_2:40663958-40663977 Msa0070350:CDS 15.0%
!! AAAATTGAGATATCAAAAGA+GGG - chr1_2:40656913-40656932 None:intergenic 20.0%
!!! ATCTCAATTTTCTTCTAATA+AGG + chr1_2:40656922-40656941 Msa0070350:CDS 20.0%
!! TTCTAATAAGGTTAATGATT+TGG + chr1_2:40656934-40656953 Msa0070350:CDS 20.0%
!! TTTCCATTAGAATGAATTAA+TGG - chr1_2:40657178-40657197 None:intergenic 20.0%
!! TAATGTTGTTAGAAAGTAAA+CGG + chr1_2:40657786-40657805 Msa0070350:intron 20.0%
!! TATCTATAATGTAAAGTACA+TGG + chr1_2:40658024-40658043 Msa0070350:intron 20.0%
!!! CAAATTTTCTAACATATGAA+AGG - chr1_2:40658487-40658506 None:intergenic 20.0%
!! TTAGAATTTCTATTCAGTAA+AGG - chr1_2:40658633-40658652 None:intergenic 20.0%
!!! AATTCAACTATAGATGATTT+TGG - chr1_2:40659130-40659149 None:intergenic 20.0%
!!! TCTAAGACAATAAAAAACTT+CGG + chr1_2:40659288-40659307 Msa0070350:intron 20.0%
!!! AAAACCATACAATTTTGTAA+TGG + chr1_2:40659697-40659716 Msa0070350:intron 20.0%
!!! AAACCATACAATTTTGTAAT+GGG + chr1_2:40659698-40659717 Msa0070350:intron 20.0%
!! TATTATACTTTAATAGCTCT+TGG + chr1_2:40660303-40660322 Msa0070350:intron 20.0%
!!! GTTTAAGAACGATTTTTAAA+GGG - chr1_2:40660560-40660579 None:intergenic 20.0%
!!! TGTTTAAGAACGATTTTTAA+AGG - chr1_2:40660561-40660580 None:intergenic 20.0%
!!! TAAATGATTTGTGATTTCTA+CGG + chr1_2:40660901-40660920 Msa0070350:intron 20.0%
!! AAATGATGTTAGAAAGTAAA+TGG + chr1_2:40661245-40661264 Msa0070350:intron 20.0%
!! ATATTAACATATGATTGTCT+TGG + chr1_2:40661294-40661313 Msa0070350:intron 20.0%
!! ATAATGTAAAGTACATTACT+TGG + chr1_2:40661484-40661503 Msa0070350:intron 20.0%
!!! CAATTATAATTTGGTTTTCA+AGG - chr1_2:40662827-40662846 None:intergenic 20.0%
!! CTTGAAAACCAAATTATAAT+TGG + chr1_2:40662825-40662844 Msa0070350:intron 20.0%
!! GTTAAGGGTAATTATAATTA+GGG + chr1_2:40663014-40663033 Msa0070350:intron 20.0%
!! GATATTTGAACATTTCATAT+AGG + chr1_2:40663485-40663504 Msa0070350:intron 20.0%
!!! GTTTATTTATTTCTGCATTT+AGG + chr1_2:40663662-40663681 Msa0070350:intron 20.0%
!!! GTCTTATTAGTAGTAATAAT+AGG + chr1_2:40663736-40663755 Msa0070350:intron 20.0%
!!! ATTATCTACGAGTTTTAAAA+TGG - chr1_2:40663847-40663866 None:intergenic 20.0%
!!! TTTTAAAACTCGTAGATAAT+AGG + chr1_2:40663847-40663866 Msa0070350:intron 20.0%
! GAAAATTGAGATATCAAAAG+AGG - chr1_2:40656914-40656933 None:intergenic 25.0%
! AATTTGACAACTCAAAATTG+TGG - chr1_2:40657018-40657037 None:intergenic 25.0%
!! TGGATTTTATTGGATTTTTC+AGG - chr1_2:40657070-40657089 None:intergenic 25.0%
! AAATCCAATAAAATCCAATG+TGG + chr1_2:40657073-40657092 Msa0070350:CDS 25.0%
! AATCCAATAAAATCCAATGT+GGG + chr1_2:40657074-40657093 Msa0070350:CDS 25.0%
! AGTCCATTAATTCATTCTAA+TGG + chr1_2:40657172-40657191 Msa0070350:CDS 25.0%
! AAAGAGAAGATGAAAGATAA+CGG - chr1_2:40657719-40657738 None:intergenic 25.0%
! TGTGGTTATAAACTAATCTA+AGG + chr1_2:40658121-40658140 Msa0070350:intron 25.0%
! GAAAAAAAGCTCAAAACTTA+TGG + chr1_2:40658321-40658340 Msa0070350:intron 25.0%
!! CTTCTTTATTACAACTTTTC+AGG - chr1_2:40658449-40658468 None:intergenic 25.0%
!!! ATTGATGTTTTTACAGTGAA+TGG - chr1_2:40658603-40658622 None:intergenic 25.0%
!!! TTTCTTTTCATAATTTGCAG+TGG + chr1_2:40658817-40658836 Msa0070350:intron 25.0%
! AAAAATTAAGGGTAAAGGAA+CGG + chr1_2:40659257-40659276 Msa0070350:intron 25.0%
!!! AGTTTTTTATTGTCTTAGAC+CGG - chr1_2:40659287-40659306 None:intergenic 25.0%
! ATATCGGATATGTTTCTTTA+AGG - chr1_2:40659331-40659350 None:intergenic 25.0%
! AAGAAACATATCCGATATTA+TGG + chr1_2:40659333-40659352 Msa0070350:intron 25.0%
! ACTGAAATTCTCCATAATAT+CGG - chr1_2:40659347-40659366 None:intergenic 25.0%
! GAAAATTCAAATACTAAGCA+GGG - chr1_2:40659475-40659494 None:intergenic 25.0%
! AGAAAATTCAAATACTAAGC+AGG - chr1_2:40659476-40659495 None:intergenic 25.0%
!!! TCAATATCTTTAGGACTAAT+TGG - chr1_2:40659664-40659683 None:intergenic 25.0%
! AATTAGTCCTAAAGATATTG+AGG + chr1_2:40659663-40659682 Msa0070350:CDS 25.0%
! ATTCCCATTACAAAATTGTA+TGG - chr1_2:40659704-40659723 None:intergenic 25.0%
! CTTGAAAACCACATTATAAT+TGG + chr1_2:40659806-40659825 Msa0070350:intron 25.0%
! GAACCTAAAGAATAATTGAA+AGG - chr1_2:40659884-40659903 None:intergenic 25.0%
!! ATTTGAAATTACATGGATGA+TGG - chr1_2:40659906-40659925 None:intergenic 25.0%
!! TGAAGGAATTTGAAATTACA+TGG - chr1_2:40659913-40659932 None:intergenic 25.0%
!! ATAGAGTTTGAAATAGTGAA+AGG + chr1_2:40660378-40660397 Msa0070350:intron 25.0%
! CAAGTAATACAAGAATAACA+TGG + chr1_2:40661032-40661051 Msa0070350:CDS 25.0%
!! ATCAGCAATAATATAGCTTT+TGG - chr1_2:40661342-40661361 None:intergenic 25.0%
! AAAAGCTATATTATTGCTGA+TGG + chr1_2:40661341-40661360 Msa0070350:CDS 25.0%
!!! TCTTCAAATGACTTTTAACT+TGG - chr1_2:40661389-40661408 None:intergenic 25.0%
! ATATAGAATTGCGAAATACA+TGG + chr1_2:40661410-40661429 Msa0070350:CDS 25.0%
! AGCATTCATGTTATAAATTG+TGG + chr1_2:40661521-40661540 Msa0070350:intron 25.0%
! TTTATCTAAACAGGGTTTAT+AGG - chr1_2:40661586-40661605 None:intergenic 25.0%
! ACAAGTTGTTTATCTAAACA+GGG - chr1_2:40661594-40661613 None:intergenic 25.0%
! TACAAGTTGTTTATCTAAAC+AGG - chr1_2:40661595-40661614 None:intergenic 25.0%
! GTCAACAAAAAAAACTATGA+AGG - chr1_2:40661822-40661841 None:intergenic 25.0%
! TTCTATAGCTAAAACTGAAA+GGG + chr1_2:40661852-40661871 Msa0070350:intron 25.0%
! CATTTCAAACGAATTCAATT+AGG - chr1_2:40661892-40661911 None:intergenic 25.0%
!! GAATTCGTTTGAAATGTAAA+CGG + chr1_2:40661896-40661915 Msa0070350:intron 25.0%
! AACGGAGTTGTAATAAAAAA+AGG + chr1_2:40661914-40661933 Msa0070350:intron 25.0%
! TTAGACTTTAGATCCTTTAA+AGG - chr1_2:40662184-40662203 None:intergenic 25.0%
! TGATGTATATAGGAAATTGA+AGG - chr1_2:40662484-40662503 None:intergenic 25.0%
!! CGTTATTAACTACAATTTTC+AGG - chr1_2:40662668-40662687 None:intergenic 25.0%
! ATAGATGAATCCATATTACT+TGG + chr1_2:40662938-40662957 Msa0070350:intron 25.0%
! CGTTAAGGGTAATTATAATT+AGG + chr1_2:40663013-40663032 Msa0070350:intron 25.0%
! AAAATAAACACTTAGAGAAG+TGG - chr1_2:40663296-40663315 None:intergenic 25.0%
!!! TTATTTCTGCATTTAGGATT+AGG + chr1_2:40663668-40663687 Msa0070350:intron 25.0%
!!! AAGACTTCAACTTTAAAATG+GGG - chr1_2:40663880-40663899 None:intergenic 25.0%
!!! CAAGACTTCAACTTTAAAAT+GGG - chr1_2:40663881-40663900 None:intergenic 25.0%
TTATGCAACTGAAATTTGCA+TGG + chr1_2:40656844-40656863 Msa0070350:CDS 30.0%
TATGCAACTGAAATTTGCAT+GGG + chr1_2:40656845-40656864 Msa0070350:CDS 30.0%
TACTACTTTCATTTCCAACT+TGG - chr1_2:40656889-40656908 None:intergenic 30.0%
! GATTTTCCCTTTGATACAAA+GGG - chr1_2:40656964-40656983 None:intergenic 30.0%
! TGATTTTCCCTTTGATACAA+AGG - chr1_2:40656965-40656984 None:intergenic 30.0%
!! ATTGGTTTGATGTTGAATCA+AGG - chr1_2:40656991-40657010 None:intergenic 30.0%
!! TTTTCAGGAGATCTAAGAAT+TGG - chr1_2:40657055-40657074 None:intergenic 30.0%
! ATTCCCACATTGGATTTTAT+TGG - chr1_2:40657080-40657099 None:intergenic 30.0%
CAAGTAAAACACGAATAAGA+TGG + chr1_2:40657447-40657466 Msa0070350:CDS 30.0%
CGAAAATTTGATTGTGTTCT+TGG + chr1_2:40657812-40657831 Msa0070350:intron 30.0%
! TCTGCAAATGACTTTTAACA+TGG - chr1_2:40657912-40657931 None:intergenic 30.0%
ACATGGTGTATGAATTTAAC+AGG + chr1_2:40658041-40658060 Msa0070350:intron 30.0%
TAGTCTAATCTTCACTTCAA+TGG + chr1_2:40658574-40658593 Msa0070350:intron 30.0%
AAGTAAGTAGCATTACGATT+TGG - chr1_2:40658723-40658742 None:intergenic 30.0%
GGACTATAGAACATAACAAT+CGG - chr1_2:40658752-40658771 None:intergenic 30.0%
GTAGCTTATACTTAAGAACA+AGG + chr1_2:40658957-40658976 Msa0070350:intron 30.0%
TAATATCAAGTTTCATGGAG+CGG - chr1_2:40658999-40659018 None:intergenic 30.0%
CATCGTAATATCAAGTTTCA+TGG - chr1_2:40659004-40659023 None:intergenic 30.0%
!!! TTTTTTTGTCTTAGAGACAG+CGG - chr1_2:40659405-40659424 None:intergenic 30.0%
GGCTTTCAAAAAAATGTCTA+TGG - chr1_2:40659454-40659473 None:intergenic 30.0%
AAAATTACAGTTGCGAATAG+AGG + chr1_2:40659534-40659553 Msa0070350:CDS 30.0%
ACTGTAACCTCAATATCTTT+AGG - chr1_2:40659673-40659692 None:intergenic 30.0%
GGTCCTTTCAATTATTCTTT+AGG + chr1_2:40659878-40659897 Msa0070350:intron 30.0%
ATGTTGAATCATTACTCCTA+CGG - chr1_2:40660037-40660056 None:intergenic 30.0%
ACAAATCAGCAAAAACGAAA+AGG + chr1_2:40660077-40660096 Msa0070350:intron 30.0%
TAGAGATTTAGTCTCATACT+AGG - chr1_2:40660223-40660242 None:intergenic 30.0%
! TCATTTACCAATTTTGCTAC+AGG + chr1_2:40660264-40660283 Msa0070350:intron 30.0%
!! AAGGGTGCTTATATTTGAAA+CGG - chr1_2:40660542-40660561 None:intergenic 30.0%
CTGATAAATGTCTATAGCAT+AGG - chr1_2:40660863-40660882 None:intergenic 30.0%
TTGTCTTGAACATAAGTAGA+TGG - chr1_2:40661631-40661650 None:intergenic 30.0%
!!! TTCAGTTTTAGCTATAGAAG+TGG - chr1_2:40661851-40661870 None:intergenic 30.0%
CTTCTATAGCTAAAACTGAA+AGG + chr1_2:40661851-40661870 Msa0070350:intron 30.0%
! TAAAACTGAAAGGGTATGAT+AGG + chr1_2:40661861-40661880 Msa0070350:intron 30.0%
CTTCTTGTACCAATATTTGT+GGG - chr1_2:40662046-40662065 None:intergenic 30.0%
TCTTCTTGTACCAATATTTG+TGG - chr1_2:40662047-40662066 None:intergenic 30.0%
! ATCGACTTTACTTCCTTTAA+AGG + chr1_2:40662168-40662187 Msa0070350:intron 30.0%
!! TATGCTACTTATTTTTCCTG+AGG + chr1_2:40662278-40662297 Msa0070350:intron 30.0%
ATAGTACATACTCAAGAACA+AGG + chr1_2:40662525-40662544 Msa0070350:intron 30.0%
!!! AACAAGGTTTTGAATTGTTG+CGG + chr1_2:40662541-40662560 Msa0070350:intron 30.0%
ACATCTAGTAATGTTCAATG+AGG + chr1_2:40662706-40662725 Msa0070350:intron 30.0%
TATCTCAAGACCAAGTAATA+TGG - chr1_2:40662951-40662970 None:intergenic 30.0%
ATCTTCATGTGTAAACGTTA+AGG + chr1_2:40662998-40663017 Msa0070350:intron 30.0%
TCTTCATGTGTAAACGTTAA+GGG + chr1_2:40662999-40663018 Msa0070350:intron 30.0%
! AATACACGACAATATTTTCG+TGG + chr1_2:40663046-40663065 Msa0070350:intron 30.0%
CATGTAATTTCTCAAGAGAA+AGG - chr1_2:40663160-40663179 None:intergenic 30.0%
GTCAAACAGTGGATATATAT+TGG + chr1_2:40663248-40663267 Msa0070350:intron 30.0%
! ATTATAAGAGCCTTGCTATA+TGG - chr1_2:40663427-40663446 None:intergenic 30.0%
ATAGAGTCATAATCAGTGTT+AGG + chr1_2:40663714-40663733 Msa0070350:intron 30.0%
!! AGACTTCAACTTTAAAATGG+GGG - chr1_2:40663879-40663898 None:intergenic 30.0%
! GCAAGACTTCAACTTTAAAA+TGG - chr1_2:40663882-40663901 None:intergenic 30.0%
TTGAAGTCTTGCTAAAGTAA+AGG + chr1_2:40663890-40663909 Msa0070350:intron 30.0%
GTATGCAAAAGTCTCAATAA+AGG + chr1_2:40664274-40664293 Msa0070350:CDS 30.0%
GTTGCATAAAAAGCTGAAGT+TGG - chr1_2:40656833-40656852 None:intergenic 35.0%
! CCAACTTGGTAATCATATTG+TGG - chr1_2:40656875-40656894 None:intergenic 35.0%
CCACAATATGATTACCAAGT+TGG + chr1_2:40656872-40656891 Msa0070350:CDS 35.0%
TGGAATTCCCTTTGTATCAA+AGG + chr1_2:40656954-40656973 Msa0070350:CDS 35.0%
GGAATTCCCTTTGTATCAAA+GGG + chr1_2:40656955-40656974 Msa0070350:CDS 35.0%
ACTCAAAATTGTGGCTAGAT+TGG - chr1_2:40657009-40657028 None:intergenic 35.0%
! ATCCAATGTGGGAATTTTCT+TGG + chr1_2:40657085-40657104 Msa0070350:CDS 35.0%
! TCGAATCTTTCGTGTTTTGT+AGG + chr1_2:40657289-40657308 Msa0070350:intron 35.0%
! TGTGGTTCATATGATTTTCC+AGG + chr1_2:40657317-40657336 Msa0070350:CDS 35.0%
ACATTTCCTGTTGACATAGT+TGG - chr1_2:40657383-40657402 None:intergenic 35.0%
!! TAAATGCATCGGTTTACTTC+TGG + chr1_2:40657533-40657552 Msa0070350:intron 35.0%
ATCAGCCTTAATATCGCTTT+CGG - chr1_2:40657865-40657884 None:intergenic 35.0%
! AAATTACCTTGAGCTTGTTC+TGG - chr1_2:40657958-40657977 None:intergenic 35.0%
!! AAACTAATCTAAGGCACTGT+TGG + chr1_2:40658130-40658149 Msa0070350:intron 35.0%
AAAGCTCAAAACTTATGGAC+AGG + chr1_2:40658326-40658345 Msa0070350:intron 35.0%
! AAACTGTTGGAGATTGGTTA+TGG - chr1_2:40658365-40658384 None:intergenic 35.0%
CTTATGAAACTGTTGGAGAT+TGG - chr1_2:40658371-40658390 None:intergenic 35.0%
ACAAGCACTTATGAAACTGT+TGG - chr1_2:40658378-40658397 None:intergenic 35.0%
AACAGTTTCATAAGTGCTTG+TGG + chr1_2:40658377-40658396 Msa0070350:intron 35.0%
GAAGTGAAGATTAGACTAAC+TGG - chr1_2:40658572-40658591 None:intergenic 35.0%
ACAAACTGCTAACATGTTTC+AGG + chr1_2:40658653-40658672 Msa0070350:intron 35.0%
CAAACTGCTAACATGTTTCA+GGG + chr1_2:40658654-40658673 Msa0070350:intron 35.0%
! CTCTACATGAGTTCTTTTCT+CGG - chr1_2:40658684-40658703 None:intergenic 35.0%
AGACTACACTTCATAACTAG+AGG - chr1_2:40659221-40659240 None:intergenic 35.0%
ACAAAAAAACCTCGATGTTG+CGG + chr1_2:40659416-40659435 Msa0070350:intron 35.0%
TACTACTTGTCTTCTGTTGT+TGG - chr1_2:40659591-40659610 None:intergenic 35.0%
CCAAATTCTGAGTGTTCAAT+TGG - chr1_2:40659618-40659637 None:intergenic 35.0%
CCAATTGAACACTCAGAATT+TGG + chr1_2:40659615-40659634 Msa0070350:CDS 35.0%
! TTTTGTATCAACTCAGTGCA+GGG + chr1_2:40659857-40659876 Msa0070350:intron 35.0%
GACATAAGGTCTACATATGA+AGG - chr1_2:40659930-40659949 None:intergenic 35.0%
TCAACCCTTTAGTTATGACT+TGG + chr1_2:40659959-40659978 Msa0070350:intron 35.0%
TGTGCCAAGTCATAACTAAA+GGG - chr1_2:40659966-40659985 None:intergenic 35.0%
TTGTGCCAAGTCATAACTAA+AGG - chr1_2:40659967-40659986 None:intergenic 35.0%
GTCATATTCAAATAATCGCG+TGG - chr1_2:40660010-40660029 None:intergenic 35.0%
GCGATTATTTGAATATGACG+TGG + chr1_2:40660011-40660030 Msa0070350:intron 35.0%
GAGTATGAGCTAAAATGTAG+CGG + chr1_2:40660099-40660118 Msa0070350:intron 35.0%
CTAACATCCTGTAGCAAAAT+TGG - chr1_2:40660274-40660293 None:intergenic 35.0%
! TTTGAAATAGTGAAAGGTCG+TGG + chr1_2:40660384-40660403 Msa0070350:intron 35.0%
! ATACCTCACTTGTCTGTTTT+TGG + chr1_2:40660445-40660464 Msa0070350:intron 35.0%
! GTGCTTATATTTGAAACGGA+GGG - chr1_2:40660538-40660557 None:intergenic 35.0%
GTATCTTTCTCATGTAGCAT+AGG - chr1_2:40660738-40660757 None:intergenic 35.0%
! TCAGGTTTTCTAACATCTGA+AGG - chr1_2:40660812-40660831 None:intergenic 35.0%
ACAAACTTCTCATGAAGATC+AGG - chr1_2:40657476-40657495 None:intergenic 35.0%
GAAATGCATCCGTTTACTTT+CGG + chr1_2:40661117-40661136 Msa0070350:intron 35.0%
CAGAAAACACCGAAAGTAAA+CGG - chr1_2:40661129-40661148 None:intergenic 35.0%
!!! CATTTTTTTTTTGTGGGCTG+TGG - chr1_2:40661271-40661290 None:intergenic 35.0%
TTATTGCTGATGGAATCAGA+TGG + chr1_2:40661351-40661370 Msa0070350:CDS 35.0%
ACATAGAGCTTAGAACACAT+GGG + chr1_2:40661557-40661576 Msa0070350:intron 35.0%
AAGCTATCAGATAGAGCTTA+TGG + chr1_2:40661683-40661702 Msa0070350:intron 35.0%
TGACACAATTACTAGTGAGA+CGG - chr1_2:40661767-40661786 None:intergenic 35.0%
!!! ACTATGAAGGCTGTTTTGAT+CGG - chr1_2:40661809-40661828 None:intergenic 35.0%
TTAGCTATAGAAGTGGAAGT+AGG - chr1_2:40661844-40661863 None:intergenic 35.0%
!! CCATAGCTTTGGCTATAAAT+TGG - chr1_2:40662018-40662037 None:intergenic 35.0%
CCAATTTATAGCCAAAGCTA+TGG + chr1_2:40662015-40662034 Msa0070350:intron 35.0%
TTTCCGTTGAAAACCAACAT+GGG - chr1_2:40662132-40662151 None:intergenic 35.0%
ATTTCCGTTGAAAACCAACA+TGG - chr1_2:40662133-40662152 None:intergenic 35.0%
ACAAACTGTTATCATGTTGC+AGG + chr1_2:40662203-40662222 Msa0070350:intron 35.0%
CAAACTGTTATCATGTTGCA+GGG + chr1_2:40662204-40662223 Msa0070350:intron 35.0%
AAACTGTTATCATGTTGCAG+GGG + chr1_2:40662205-40662224 Msa0070350:intron 35.0%
AGTCGCAAAGTGATGTATAT+AGG - chr1_2:40662494-40662513 None:intergenic 35.0%
GTGATGAACGTTCAAAATTG+AGG - chr1_2:40662579-40662598 None:intergenic 35.0%
AAAAGTAGTAGCACACTCAT+TGG - chr1_2:40662799-40662818 None:intergenic 35.0%
ATCTATCCTTAAATGCAGAG+GGG - chr1_2:40662924-40662943 None:intergenic 35.0%
CATCTATCCTTAAATGCAGA+GGG - chr1_2:40662925-40662944 None:intergenic 35.0%
TCATCTATCCTTAAATGCAG+AGG - chr1_2:40662926-40662945 None:intergenic 35.0%
TGTGATACTAACAGGTTGTT+TGG - chr1_2:40663133-40663152 None:intergenic 35.0%
AAGGTGTATGTGATACTAAC+AGG - chr1_2:40663141-40663160 None:intergenic 35.0%
CATGTGAGATTCTCTCTTAA+TGG - chr1_2:40663362-40663381 None:intergenic 35.0%
GGTCGAGTCTAGTATAAATT+AGG + chr1_2:40663619-40663638 Msa0070350:intron 35.0%
CTATCATATTCGTGAAAGTC+TGG + chr1_2:40663919-40663938 Msa0070350:intron 35.0%
AAACTGCAAGGAAAACAATG+AGG + chr1_2:40664006-40664025 Msa0070350:CDS 35.0%
AACTGCAAGGAAAACAATGA+GGG + chr1_2:40664007-40664026 Msa0070350:CDS 35.0%
AGTGAAGAAAGAACCACAAA+AGG + chr1_2:40664046-40664065 Msa0070350:CDS 35.0%
!! TGTGCTATTATCTCCTTTTG+TGG - chr1_2:40664062-40664081 None:intergenic 35.0%
AATAGCACAAGTAAGTTTCG+TGG + chr1_2:40664073-40664092 Msa0070350:CDS 35.0%
CAAGATCTTCAAAAGAAGAG+AGG + chr1_2:40664124-40664143 Msa0070350:CDS 35.0%
CACTTGACGAATTCTATAGA+AGG + chr1_2:40664305-40664324 Msa0070350:CDS 35.0%
AGGATTAAGTACCAGATATG+AGG + chr1_2:40664325-40664344 Msa0070350:CDS 35.0%
TAAATGCACTTGAACCCATT+TGG - chr1_2:40664359-40664378 None:intergenic 35.0%
!! CTGAAGTTGGTGACTCAAAA+CGG - chr1_2:40656820-40656839 None:intergenic 40.0%
CTCCAAGAAAATTCCCACAT+TGG - chr1_2:40657090-40657109 None:intergenic 40.0%
! CGTGTTTTGTAGGTTTCTTG+TGG + chr1_2:40657299-40657318 Msa0070350:intron 40.0%
GAGAAATTCAGTTGTGAACC+TGG - chr1_2:40657338-40657357 None:intergenic 40.0%
GGAAATGTCTCAACGAATTC+CGG + chr1_2:40657395-40657414 Msa0070350:CDS 40.0%
CCGATGCATTTACTTACTCT+CGG - chr1_2:40657525-40657544 None:intergenic 40.0%
CCGAGAGTAAGTAAATGCAT+CGG + chr1_2:40657522-40657541 Msa0070350:intron 40.0%
CAACACCGAAAGCGATATTA+AGG + chr1_2:40657857-40657876 Msa0070350:CDS 40.0%
GAAAGCGATATTAAGGCTGA+TGG + chr1_2:40657864-40657883 Msa0070350:CDS 40.0%
!! TTAAGGCTGATGGATTCAGA+TGG + chr1_2:40657874-40657893 Msa0070350:CDS 40.0%
TATATGCCAGAACAAGCTCA+AGG + chr1_2:40657949-40657968 Msa0070350:CDS 40.0%
TGACATAGAGCTTAGAACAC+AGG + chr1_2:40658095-40658114 Msa0070350:intron 40.0%
GACATAGAGCTTAGAACACA+GGG + chr1_2:40658096-40658115 Msa0070350:intron 40.0%
ACATAGAGCTTAGAACACAG+GGG + chr1_2:40658097-40658116 Msa0070350:intron 40.0%
AAGCGAGAAATGATTGCACT+GGG - chr1_2:40658773-40658792 None:intergenic 40.0%
TAAGCGAGAAATGATTGCAC+TGG - chr1_2:40658774-40658793 None:intergenic 40.0%
TCAGTCAAATGTGACTGATG+TGG + chr1_2:40659362-40659381 Msa0070350:intron 40.0%
AAATGTCTATGGATGCGATC+TGG - chr1_2:40659443-40659462 None:intergenic 40.0%
! CTTTTGTATCAACTCAGTGC+AGG + chr1_2:40659856-40659875 Msa0070350:intron 40.0%
!! GTTGAGAGTGCTATGACATA+AGG - chr1_2:40659944-40659963 None:intergenic 40.0%
!! ACAGACAAGTGAGGTATTGT+AGG - chr1_2:40660442-40660461 None:intergenic 40.0%
ACTCCAAAAACAGACAAGTG+AGG - chr1_2:40660451-40660470 None:intergenic 40.0%
! GGTGCTTATATTTGAAACGG+AGG - chr1_2:40660539-40660558 None:intergenic 40.0%
CCAGAAGTTGTTGACATTGT+TGG - chr1_2:40660983-40661002 None:intergenic 40.0%
CCAACAATGTCAACAACTTC+TGG + chr1_2:40660980-40660999 Msa0070350:CDS 40.0%
CTGATGAACCATTAGTAGCA+GGG - chr1_2:40661009-40661028 None:intergenic 40.0%
ACTGATGAACCATTAGTAGC+AGG - chr1_2:40661010-40661029 None:intergenic 40.0%
ACGGATGCATTTCTTACTCT+CGG - chr1_2:40661110-40661129 None:intergenic 40.0%
CTAACAAATTTACCCTGAGC+TGG - chr1_2:40661441-40661460 None:intergenic 40.0%
GACATAGAGCTTAGAACACA+TGG + chr1_2:40658096-40658115 Msa0070350:intron 40.0%
CAAGTTACCAATGCTTTGTC+CGG + chr1_2:40661961-40661980 Msa0070350:intron 40.0%
AAGTTACCAATGCTTTGTCC+GGG + chr1_2:40661962-40661981 Msa0070350:intron 40.0%
!! ATGGACTAGCCCACAAATAT+TGG + chr1_2:40662034-40662053 Msa0070350:intron 40.0%
TTTCAACCTGAAACCTTGAG+AGG + chr1_2:40662067-40662086 Msa0070350:intron 40.0%
!!! CAACCCATGTTGGTTTTCAA+CGG + chr1_2:40662126-40662145 Msa0070350:intron 40.0%
ATAGAACATGTCAATGCCTC+AGG - chr1_2:40662297-40662316 None:intergenic 40.0%
ACATGTAGTTGAAGCTGAAG+TGG - chr1_2:40662425-40662444 None:intergenic 40.0%
GAAGGATATATACCTCTAGC+TGG - chr1_2:40662466-40662485 None:intergenic 40.0%
TCTATCCTTAAATGCAGAGG+GGG - chr1_2:40662923-40662942 None:intergenic 40.0%
TGTTTGACACATCATTGGAG+AGG - chr1_2:40663236-40663255 None:intergenic 40.0%
TCCAATGATGTGTCAAACAG+TGG + chr1_2:40663237-40663256 Msa0070350:intron 40.0%
TCCACTGTTTGACACATCAT+TGG - chr1_2:40663241-40663260 None:intergenic 40.0%
TGAGAACTAAGCAAACTGCA+AGG + chr1_2:40663994-40664013 Msa0070350:CDS 40.0%
ACTGCAAGGAAAACAATGAG+GGG + chr1_2:40664008-40664027 Msa0070350:CDS 40.0%
TCTTTCTTCACTCCTCTAGT+TGG - chr1_2:40664038-40664057 None:intergenic 40.0%
! CATCCTTTGTTAGCTTGAGT+TGG - chr1_2:40664185-40664204 None:intergenic 40.0%
CAACTCAAGCTAACAAAGGA+TGG + chr1_2:40664183-40664202 Msa0070350:CDS 40.0%
AGATGCGGAGTATGGTAAAA+GGG - chr1_2:40664214-40664233 None:intergenic 40.0%
TATGAGGAACCTGATCCAAA+TGG + chr1_2:40664341-40664360 Msa0070350:CDS 40.0%
ATGAGGAACCTGATCCAAAT+GGG + chr1_2:40664342-40664361 Msa0070350:CDS 40.0%
CTGTCTCCAACTATGTCAAC+AGG + chr1_2:40657374-40657393 Msa0070350:CDS 45.0%
TCCATTACAAGCAGGGTTTC+CGG - chr1_2:40657417-40657436 None:intergenic 45.0%
CCGATGATCCATTACAAGCA+GGG - chr1_2:40657424-40657443 None:intergenic 45.0%
!! CCCTGCTTGTAATGGATCAT+CGG + chr1_2:40657421-40657440 Msa0070350:CDS 45.0%
ACCGATGATCCATTACAAGC+AGG - chr1_2:40657425-40657444 None:intergenic 45.0%
! GCTGCTTTGCTTGATTGTAG+AGG + chr1_2:40657834-40657853 Msa0070350:intron 45.0%
! CAGTGGCTTGCAAATTAGAG+AGG + chr1_2:40658834-40658853 Msa0070350:intron 45.0%
GCGTCTTCATGAACAACTAG+AGG + chr1_2:40658885-40658904 Msa0070350:CDS 45.0%
GACTGATGTGGCCTCAATTA+TGG + chr1_2:40659374-40659393 Msa0070350:intron 45.0%
CAGTTGCGAATAGAGGAACA+AGG + chr1_2:40659541-40659560 Msa0070350:CDS 45.0%
ATAATCGCGTGGCAATGCAA+CGG - chr1_2:40659999-40660018 None:intergenic 45.0%
TTTGAATATGACGTGGCCGT+AGG + chr1_2:40660018-40660037 Msa0070350:intron 45.0%
CGAGCGTGATAGAACTGTAA+TGG - chr1_2:40660154-40660173 None:intergenic 45.0%
GTGAAAGGTCGTGGAGATAT+TGG + chr1_2:40660393-40660412 Msa0070350:intron 45.0%
TGGAGATATTGGATGTGGTG+AGG + chr1_2:40660404-40660423 Msa0070350:intron 45.0%
AGTGTGCGTGTTTCGTTGTT+AGG + chr1_2:40660468-40660487 Msa0070350:intron 45.0%
GAGAAGTTCAGTTGCGAAAC+AGG - chr1_2:40660938-40660957 None:intergenic 45.0%
TCTGGAAACCCTGCTACTAA+TGG + chr1_2:40660998-40661017 Msa0070350:CDS 45.0%
TCTTGGCTGCTTGATTGTAG+AGG + chr1_2:40661311-40661330 Msa0070350:intron 45.0%
AGTTACCAATGCTTTGTCCG+GGG + chr1_2:40661963-40661982 Msa0070350:intron 45.0%
AGGGTGAAGACTTAGAACCT+TGG - chr1_2:40662101-40662120 None:intergenic 45.0%
!! GGTTCTAAGTCTTCACCCTT+AGG + chr1_2:40662102-40662121 Msa0070350:intron 45.0%
CGTTGAAAACCAACATGGGT+TGG - chr1_2:40662128-40662147 None:intergenic 45.0%
TAGCTGGTCATGAAGAAGCT+TGG - chr1_2:40662450-40662469 None:intergenic 45.0%
CACACTGAGAGCTTCTGTTT+CGG + chr1_2:40662871-40662890 Msa0070350:intron 45.0%
TTCTGTTTCGGCTCATTGCA+GGG + chr1_2:40662883-40662902 Msa0070350:intron 45.0%
TTCGTGGTAAAACGCACGAA+TGG + chr1_2:40663062-40663081 Msa0070350:intron 45.0%
CATGCACCTTTCTCTTGTAG+CGG + chr1_2:40663176-40663195 Msa0070350:intron 45.0%
!! AAAGCACCGCTACAAGAGAA+AGG - chr1_2:40663185-40663204 None:intergenic 45.0%
TTCTCTCGTGCCATATAGCA+AGG + chr1_2:40663414-40663433 Msa0070350:intron 45.0%
ATCGAGTCTGCATAGCATCT+AGG + chr1_2:40663778-40663797 Msa0070350:intron 45.0%
!! CCTTTGTTAGCTTGAGTTGG+TGG - chr1_2:40664182-40664201 None:intergenic 45.0%
CCACCAACTCAAGCTAACAA+AGG + chr1_2:40664179-40664198 Msa0070350:CDS 45.0%
CAGATGCGGAGTATGGTAAA+AGG - chr1_2:40664215-40664234 None:intergenic 45.0%
TGGATCAGGTTCCTCATATC+TGG - chr1_2:40664339-40664358 None:intergenic 45.0%
CACTTGAACCCATTTGGATC+AGG - chr1_2:40664353-40664372 None:intergenic 45.0%
!! TAATAAGAAAAAAAAAATTA+AGG + chr1_2:40659245-40659264 Msa0070350:intron 5.0%
!! AATAAGAAAAAAAAAATTAA+GGG + chr1_2:40659246-40659265 Msa0070350:intron 5.0%
!!! TTATAAATTTTCTTTTATAT+TGG - chr1_2:40661183-40661202 None:intergenic 5.0%
!! TTAAAAAGTTAAAATAAAAT+TGG - chr1_2:40663517-40663536 None:intergenic 5.0%
TCCGGAAACCCTGCTTGTAA+TGG + chr1_2:40657413-40657432 Msa0070350:CDS 50.0%
GTTGAGTGTGTGAATCGCCT+TGG + chr1_2:40657494-40657513 Msa0070350:CDS 50.0%
AGCTTAGAACACAGGGGATG+TGG + chr1_2:40658103-40658122 Msa0070350:intron 50.0%
AGGGTAAAGGAACGGTGTTC+CGG + chr1_2:40659265-40659284 Msa0070350:intron 50.0%
TATCACGCTCGAGAGATCAG+AGG + chr1_2:40660163-40660182 Msa0070350:intron 50.0%
GGTCGTGGAGATATTGGATG+TGG + chr1_2:40660399-40660418 Msa0070350:intron 50.0%
TATTGGATGTGGTGAGGCAG+AGG + chr1_2:40660410-40660429 Msa0070350:intron 50.0%
GTTGAGTGTGTGAATCGCCT+TGG + chr1_2:40657494-40657513 Msa0070350:CDS 50.0%
ATACATGGCTGAACCAGCTC+AGG + chr1_2:40661425-40661444 Msa0070350:CDS 50.0%
TACATGGCTGAACCAGCTCA+GGG + chr1_2:40661426-40661445 Msa0070350:CDS 50.0%
GTTACCAATGCTTTGTCCGG+GGG + chr1_2:40661964-40661983 Msa0070350:intron 50.0%
ATAAATTGGCCCCCAGTTGG+TGG - chr1_2:40662004-40662023 None:intergenic 50.0%
GCTATAAATTGGCCCCCAGT+TGG - chr1_2:40662007-40662026 None:intergenic 50.0%
!! TGTGGGCTAGTCCATAGCTT+TGG - chr1_2:40662029-40662048 None:intergenic 50.0%
TGTGCTCCTCTCAAGGTTTC+AGG - chr1_2:40662076-40662095 None:intergenic 50.0%
!! ACCAACATGGGTTGGCCTAA+GGG - chr1_2:40662120-40662139 None:intergenic 50.0%
!! AACCAACATGGGTTGGCCTA+AGG - chr1_2:40662121-40662140 None:intergenic 50.0%
GCTTCTTCATGACCAGCTAG+AGG + chr1_2:40662451-40662470 Msa0070350:CDS 50.0%
CGAAACAGAAGCTCTCAGTG+TGG - chr1_2:40662873-40662892 None:intergenic 50.0%
CTTCTGTTTCGGCTCATTGC+AGG + chr1_2:40662882-40662901 Msa0070350:intron 50.0%
TCTTGCCCCCTCTGCATTTA+AGG + chr1_2:40662915-40662934 Msa0070350:intron 50.0%
CGTGAAAGTCTGGACATTGC+AGG + chr1_2:40663929-40663948 Msa0070350:intron 50.0%
ATGAGGGGAAGACCAACTAG+AGG + chr1_2:40664023-40664042 Msa0070350:CDS 50.0%
GTTCTTGCAGATGCGGAGTA+TGG - chr1_2:40664222-40664241 None:intergenic 50.0%
CTCGATCGTTCTTGCAGATG+CGG - chr1_2:40664229-40664248 None:intergenic 50.0%
! CTGCAAGAACGATCGAGTTG+AGG + chr1_2:40664232-40664251 Msa0070350:CDS 50.0%
!! AGAACGATCGAGTTGAGGTC+TGG + chr1_2:40664237-40664256 Msa0070350:CDS 50.0%
!! GAACGATCGAGTTGAGGTCT+GGG + chr1_2:40664238-40664257 Msa0070350:CDS 50.0%
! AGGTCTGGGATCACACTAAG+TGG + chr1_2:40664252-40664271 Msa0070350:CDS 50.0%
GAGTGTGTGAATCGCCTTGG+TGG + chr1_2:40657497-40657516 Msa0070350:CDS 55.0%
ACTTACTCTCGGCACCACCA+AGG - chr1_2:40657514-40657533 None:intergenic 55.0%
AGCTGCAGCTAGACGTTCAG+AGG + chr1_2:40658863-40658882 Msa0070350:CDS 55.0%
TTGTCTTAGAGACAGCGGCG+TGG - chr1_2:40659400-40659419 None:intergenic 55.0%
GAGTGTGTGAATCGCCTTGG+TGG + chr1_2:40657497-40657516 Msa0070350:CDS 55.0%
TCTTACTCTCGGCACCACCA+AGG - chr1_2:40661099-40661118 None:intergenic 55.0%
TAGTCCCCCGGACAAAGCAT+TGG - chr1_2:40661971-40661990 None:intergenic 55.0%
TAATCTCACCGGCCACCAAC+TGG + chr1_2:40661989-40662008 Msa0070350:intron 55.0%
AATCTCACCGGCCACCAACT+GGG + chr1_2:40661990-40662009 Msa0070350:intron 55.0%
CTTGGAGTGTGCTCCTCTCA+AGG - chr1_2:40662083-40662102 None:intergenic 55.0%
! CTTGAGAGGAGCACACTCCA+AGG + chr1_2:40662081-40662100 Msa0070350:intron 55.0%
ACCCTTAGGCCAACCCATGT+TGG + chr1_2:40662116-40662135 Msa0070350:intron 55.0%
CAGCGGCGTGGCCATAATTG+AGG - chr1_2:40659388-40659407 None:intergenic 60.0%
CGATCTGGACCGCAACATCG+AGG - chr1_2:40659428-40659447 None:intergenic 60.0%
ATCGCGTGGCAATGCAACGG+TGG - chr1_2:40659996-40660015 None:intergenic 60.0%
GTCCGGGGGACTAATCTCAC+CGG + chr1_2:40661978-40661997 Msa0070350:intron 60.0%
ATCTCACCGGCCACCAACTG+GGG + chr1_2:40661991-40662010 Msa0070350:intron 60.0%
! GGCCGGTGAGATTAGTCCCC+CGG - chr1_2:40661983-40662002 None:intergenic 65.0%
TCTCACCGGCCACCAACTGG+GGG + chr1_2:40661992-40662011 Msa0070350:intron 65.0%
!! ATTGGCCCCCAGTTGGTGGC+CGG - chr1_2:40662000-40662019 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 40656801 40664379 40656801 ID=Msa0070350;Name=Msa0070350
chr1_2 mRNA 40656801 40664379 40656801 ID=Msa0070350-mRNA-1;Parent=Msa0070350;Name=Msa0070350-mRNA-1;_AED=0.14;_eAED=0.14;_QI=11|0.5|0.45|0.81|1|1|11|0|604
chr1_2 exon 40656801 40657210 40656801 ID=Msa0070350-mRNA-1:exon:12386;Parent=Msa0070350-mRNA-1
chr1_2 exon 40657311 40657527 40657311 ID=Msa0070350-mRNA-1:exon:12387;Parent=Msa0070350-mRNA-1
chr1_2 exon 40657854 40657970 40657854 ID=Msa0070350-mRNA-1:exon:12388;Parent=Msa0070350-mRNA-1
chr1_2 exon 40658675 40658726 40658675 ID=Msa0070350-mRNA-1:exon:12389;Parent=Msa0070350-mRNA-1
chr1_2 exon 40658837 40658906 40658837 ID=Msa0070350-mRNA-1:exon:12390;Parent=Msa0070350-mRNA-1
chr1_2 exon 40659526 40659684 40659526 ID=Msa0070350-mRNA-1:exon:12391;Parent=Msa0070350-mRNA-1
chr1_2 exon 40660965 40661112 40660965 ID=Msa0070350-mRNA-1:exon:12392;Parent=Msa0070350-mRNA-1
chr1_2 exon 40661331 40661447 40661331 ID=Msa0070350-mRNA-1:exon:12393;Parent=Msa0070350-mRNA-1
chr1_2 exon 40662225 40662276 40662225 ID=Msa0070350-mRNA-1:exon:12394;Parent=Msa0070350-mRNA-1
chr1_2 exon 40662418 40662472 40662418 ID=Msa0070350-mRNA-1:exon:12395;Parent=Msa0070350-mRNA-1
chr1_2 exon 40663951 40664379 40663951 ID=Msa0070350-mRNA-1:exon:12396;Parent=Msa0070350-mRNA-1
chr1_2 five_prime_UTR 40656801 40656811 40656801 ID=Msa0070350-mRNA-1:five_prime_utr;Parent=Msa0070350-mRNA-1
chr1_2 CDS 40656812 40657210 40656812 ID=Msa0070350-mRNA-1:cds;Parent=Msa0070350-mRNA-1
chr1_2 CDS 40657311 40657527 40657311 ID=Msa0070350-mRNA-1:cds;Parent=Msa0070350-mRNA-1
chr1_2 CDS 40657854 40657970 40657854 ID=Msa0070350-mRNA-1:cds;Parent=Msa0070350-mRNA-1
chr1_2 CDS 40658675 40658726 40658675 ID=Msa0070350-mRNA-1:cds;Parent=Msa0070350-mRNA-1
chr1_2 CDS 40658837 40658906 40658837 ID=Msa0070350-mRNA-1:cds;Parent=Msa0070350-mRNA-1
chr1_2 CDS 40659526 40659684 40659526 ID=Msa0070350-mRNA-1:cds;Parent=Msa0070350-mRNA-1
chr1_2 CDS 40660965 40661112 40660965 ID=Msa0070350-mRNA-1:cds;Parent=Msa0070350-mRNA-1
chr1_2 CDS 40661331 40661447 40661331 ID=Msa0070350-mRNA-1:cds;Parent=Msa0070350-mRNA-1
chr1_2 CDS 40662225 40662276 40662225 ID=Msa0070350-mRNA-1:cds;Parent=Msa0070350-mRNA-1
chr1_2 CDS 40662418 40662472 40662418 ID=Msa0070350-mRNA-1:cds;Parent=Msa0070350-mRNA-1
chr1_2 CDS 40663951 40664379 40663951 ID=Msa0070350-mRNA-1:cds;Parent=Msa0070350-mRNA-1
Gene Sequence

>Msa0070350

ATGAGCCGTTTTGAGTCACCAACTTCAGCTTTTTATGCAACTGAAATTTGCATGGGTTTTCCACAATATGATTACCAAGTTGGAAATGAAAGTAGTAACCCTCTTTTGATATCTCAATTTTCTTCTAATAAGGTTAATGATTTGGAATTCCCTTTGTATCAAAGGGAAAATCATTACCTTGATTCAACATCAAACCAATCTAGCCACAATTTTGAGTTGTCAAATTTAAACACTTTGCAACCAATTCTTAGATCTCCTGAAAAATCCAATAAAATCCAATGTGGGAATTTTCTTGGAGAAAATTTTCTCTCAGTTGAGCAAAATAAATTCTTCATTGATGATGCTGCATCAGTTAGTATGAGTCCATTAATTCATTCTAATGGAAATCAAGATCATAAAGTTTCTTGTGGTTCATATGATTTTCCAGGTTCACAACTGAATTTCTCTTATCAGCAAGATAAACTGTCTCCAACTATGTCAACAGGAAATGTCTCAACGAATTCCGGAAACCCTGCTTGTAATGGATCATCGGTTTCAAGTAAAACACGAATAAGATGGACTCAAGATCTTCATGAGAAGTTTGTTGAGTGTGTGAATCGCCTTGGTGGTGCCGAGAAGGCAACACCGAAAGCGATATTAAGGCTGATGGATTCAGATGGATTGACAATTTTCCATGTTAAAAGTCATTTGCAGAAGTATAGAATTGCAAGATATATGCCAGAACAAGCTCAAGGGAAATCCGAGAAAAGAACTCATGTAGAGAATGTGAATCTTGATGCCAAATCTGGCTTGCAAATTAGAGAGGCACTTCAGCTGCAGCTAGACGTTCAGAGGCGTCTTCATGAACAACTAGAGATTCAGAGAAAATTACAGTTGCGAATAGAGGAACAAGGAAAGCAGTTGAAGATGATGTTTGACCAACAACAGAAGACAAGTAGTAGTAACCAATTGAACACTCAGAATTTGGACATTACATCAAACAATGATATACCAATTAGTCCTAAAGATATTGAGCAAGAGAAAATGTCTCCAACAATGTCAACAACTTCTGGAAACCCTGCTACTAATGGTTCATCAGTTTCAAGTAATACAAGAATAACATGGACTCCTGATCTTCATGAGAAGTTTGTTGAGTGTGTGAATCGCCTTGGTGGTGCCGAGAAGGCGTTACCAAAAGCTATATTATTGCTGATGGAATCAGATGGATTGACAATCTTCCAAGTTAAAAGTCATTTGAAGAAATATAGAATTGCGAAATACATGGCTGAACCAGCTCAGGGGGAATCTGAGAAAAGAACAAATGTAGAGAATGTGCATCTTGATGTCAAATCAGAGCCACTTCAGCTTCAACTACATGTTTCCAAGCTTCTTCATGACCAGCTAGAGGAAAACCAATTAAAGAATTTTTACAGAAGGAGATTTGCAATCATGAGAACTAAGCAAACTGCAAGGAAAACAATGAGGGGAAGACCAACTAGAGGAGTGAAGAAAGAACCACAAAAGGAGATAATAGCACAAGTAAGTTTCGTGGATGAAGTGTCGACAAGAACTCAAGACAGCAAGATCTTCAAAAGAAGAGAGGATGTCATGATCAAGTCGCACGAACTTTTCTATCCACCAACTCAAGCTAACAAAGGATGGTATGACCCTTTTACCATACTCCGCATCTGCAAGAACGATCGAGTTGAGGTCTGGGATCACACTAAGTGGTATGCAAAAGTCTCAATAAAGGAAATTATACACTTGACGAATTCTATAGAAGGATTAAGTACCAGATATGAGGAACCTGATCCAAATGGGTTCAAGTGCATTTAG
Protein sequence

>Msa0070350

MSRFESPTSAFYATEICMGFPQYDYQVGNESSNPLLISQFSSNKVNDLEFPLYQRENHYLDSTSNQSSHNFELSNLNTLQPILRSPEKSNKIQCGNFLGENFLSVEQNKFFIDDAASVSMSPLIHSNGNQDHKVSCGSYDFPGSQLNFSYQQDKLSPTMSTGNVSTNSGNPACNGSSVSSKTRIRWTQDLHEKFVECVNRLGGAEKATPKAILRLMDSDGLTIFHVKSHLQKYRIARYMPEQAQGKSEKRTHVENVNLDAKSGLQIREALQLQLDVQRRLHEQLEIQRKLQLRIEEQGKQLKMMFDQQQKTSSSNQLNTQNLDITSNNDIPISPKDIEQEKMSPTMSTTSGNPATNGSSVSSNTRITWTPDLHEKFVECVNRLGGAEKALPKAILLLMESDGLTIFQVKSHLKKYRIAKYMAEPAQGESEKRTNVENVHLDVKSEPLQLQLHVSKLLHDQLEENQLKNFYRRRFAIMRTKQTARKTMRGRPTRGVKKEPQKEIIAQVSFVDEVSTRTQDSKIFKRREDVMIKSHELFYPPTQANKGWYDPFTILRICKNDRVEVWDHTKWYAKVSIKEIIHLTNSIEGLSTRYEEPDPNGFKCI*