Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0071350 | XP_039690067.1 | 76.316 | 418 | 81 | 6 | 1 | 413 | 1 | 405 | 0.0 | 628 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0071350 | sp|Q8L3W1|VRN1_ARATH | 25.806 | 341 | 192 | 10 | 7 | 294 | 4 | 336 | 9.54e-20 | 93.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0071350 | A0A072VFJ7 | 76.316 | 418 | 81 | 6 | 1 | 413 | 1 | 405 | 0.0 | 628 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0071350 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0071350 | MtrunA17_Chr1g0163181 | 68.539 | 445 | 95 | 7 | 1 | 409 | 1 | 436 | 0.0 | 598 |
| Msa0071350 | MtrunA17_Chr1g0163201 | 75.689 | 399 | 79 | 6 | 20 | 413 | 18 | 403 | 0.0 | 589 |
| Msa0071350 | MtrunA17_Chr1g0163251 | 59.122 | 296 | 105 | 2 | 1 | 295 | 1 | 281 | 2.12e-118 | 350 |
| Msa0071350 | MtrunA17_Chr1g0163151 | 72.444 | 225 | 56 | 2 | 179 | 403 | 4 | 222 | 1.11e-112 | 329 |
| Msa0071350 | MtrunA17_Chr1g0163111 | 64.583 | 240 | 62 | 3 | 177 | 404 | 2 | 230 | 6.30e-103 | 305 |
| Msa0071350 | MtrunA17_Chr1g0171611 | 48.197 | 305 | 115 | 9 | 1 | 297 | 1 | 270 | 1.73e-84 | 260 |
| Msa0071350 | MtrunA17_Chr1g0163261 | 45.741 | 317 | 143 | 6 | 1 | 308 | 1 | 297 | 2.10e-83 | 257 |
| Msa0071350 | MtrunA17_Chr1g0163231 | 48.525 | 305 | 126 | 10 | 1 | 297 | 1 | 282 | 2.80e-83 | 257 |
| Msa0071350 | MtrunA17_Chr1g0163191 | 76.543 | 162 | 37 | 1 | 1 | 162 | 1 | 161 | 6.53e-73 | 225 |
| Msa0071350 | MtrunA17_Chr1g0163241 | 64.773 | 176 | 45 | 3 | 1 | 175 | 7 | 166 | 7.23e-67 | 210 |
| Msa0071350 | MtrunA17_Chr6g0476171 | 41.315 | 213 | 117 | 6 | 195 | 401 | 34 | 244 | 7.14e-42 | 148 |
| Msa0071350 | MtrunA17_Chr1g0162151 | 40.088 | 227 | 116 | 4 | 179 | 405 | 4 | 210 | 9.90e-41 | 144 |
| Msa0071350 | MtrunA17_Chr1g0208771 | 25.855 | 468 | 238 | 14 | 20 | 401 | 12 | 456 | 5.74e-36 | 137 |
| Msa0071350 | MtrunA17_Chr1g0163131 | 32.526 | 289 | 177 | 7 | 14 | 293 | 27 | 306 | 5.44e-33 | 126 |
| Msa0071350 | MtrunA17_Chr1g0163131 | 56.000 | 75 | 29 | 2 | 328 | 400 | 232 | 304 | 4.52e-17 | 81.6 |
| Msa0071350 | MtrunA17_Chr7g0233561 | 30.503 | 318 | 166 | 10 | 9 | 294 | 18 | 312 | 2.03e-32 | 125 |
| Msa0071350 | MtrunA17_Chr1g0163091 | 39.860 | 143 | 84 | 1 | 179 | 321 | 4 | 144 | 7.58e-32 | 119 |
| Msa0071350 | MtrunA17_Chr1g0163101 | 42.683 | 164 | 73 | 5 | 14 | 173 | 26 | 172 | 3.62e-31 | 117 |
| Msa0071350 | MtrunA17_Chr7g0233521 | 30.070 | 286 | 164 | 9 | 21 | 294 | 2 | 263 | 6.39e-31 | 119 |
| Msa0071350 | MtrunA17_Chr7g0233541 | 29.032 | 310 | 183 | 8 | 21 | 309 | 2 | 295 | 3.27e-30 | 118 |
| Msa0071350 | MtrunA17_Chr3g0131891 | 29.739 | 306 | 174 | 11 | 14 | 301 | 28 | 310 | 1.36e-29 | 117 |
| Msa0071350 | MtrunA17_Chr3g0103171 | 27.402 | 281 | 175 | 7 | 20 | 292 | 5 | 264 | 1.82e-29 | 115 |
| Msa0071350 | MtrunA17_Chr1g0162161 | 39.241 | 158 | 83 | 4 | 21 | 177 | 4 | 149 | 9.91e-29 | 110 |
| Msa0071350 | MtrunA17_Chr3g0103181 | 27.243 | 301 | 168 | 10 | 9 | 292 | 12 | 278 | 7.58e-28 | 111 |
| Msa0071350 | MtrunA17_Chr1g0163121 | 40.373 | 161 | 70 | 4 | 19 | 177 | 9 | 145 | 2.51e-27 | 106 |
| Msa0071350 | MtrunA17_Chr8g0390841 | 28.758 | 306 | 171 | 12 | 14 | 294 | 48 | 331 | 6.68e-27 | 112 |
| Msa0071350 | MtrunA17_Chr6g0476181 | 38.554 | 166 | 87 | 5 | 21 | 178 | 2 | 160 | 3.70e-24 | 98.2 |
| Msa0071350 | MtrunA17_Chr1g0163221 | 24.938 | 401 | 224 | 14 | 14 | 401 | 20 | 356 | 7.78e-24 | 102 |
| Msa0071350 | MtrunA17_Chr1g0163071 | 24.919 | 309 | 196 | 7 | 21 | 305 | 2 | 298 | 9.31e-23 | 97.8 |
| Msa0071350 | MtrunA17_Chr4g0067431 | 29.167 | 312 | 177 | 13 | 9 | 292 | 15 | 310 | 1.02e-22 | 98.2 |
| Msa0071350 | MtrunA17_Chr1g0163081 | 34.591 | 159 | 84 | 3 | 21 | 177 | 6 | 146 | 1.57e-22 | 93.2 |
| Msa0071350 | MtrunA17_Chr7g0233531 | 28.621 | 290 | 163 | 9 | 21 | 294 | 2 | 263 | 8.83e-22 | 94.7 |
| Msa0071350 | MtrunA17_Chr1g0163161 | 37.500 | 152 | 70 | 5 | 33 | 177 | 1 | 134 | 2.12e-20 | 86.7 |
| Msa0071350 | MtrunA17_Chr1g0163141 | 32.370 | 173 | 101 | 3 | 17 | 177 | 7 | 175 | 7.13e-20 | 87.0 |
| Msa0071350 | MtrunA17_Chr7g0233571 | 46.667 | 90 | 46 | 1 | 14 | 101 | 19 | 108 | 1.20e-18 | 84.3 |
| Msa0071350 | MtrunA17_Chr3g0103191 | 26.054 | 261 | 163 | 7 | 9 | 260 | 12 | 251 | 2.75e-18 | 84.0 |
| Msa0071350 | MtrunA17_Chr3g0103151 | 35.714 | 126 | 74 | 4 | 9 | 130 | 12 | 134 | 2.91e-18 | 81.6 |
| Msa0071350 | MtrunA17_Chr5g0419201 | 38.947 | 95 | 56 | 1 | 14 | 106 | 25 | 119 | 1.63e-17 | 80.5 |
| Msa0071350 | MtrunA17_Chr6g0467351 | 36.036 | 111 | 68 | 2 | 13 | 120 | 23 | 133 | 3.48e-16 | 77.4 |
| Msa0071350 | MtrunA17_Chr3g0077411 | 24.150 | 294 | 159 | 10 | 14 | 292 | 271 | 515 | 1.64e-13 | 72.4 |
| Msa0071350 | MtrunA17_Chr4g0033961 | 33.333 | 135 | 80 | 4 | 7 | 131 | 4 | 138 | 7.54e-13 | 69.7 |
| Msa0071350 | MtrunA17_Chr5g0419211 | 36.170 | 94 | 57 | 2 | 216 | 308 | 11 | 102 | 8.32e-13 | 64.7 |
| Msa0071350 | MtrunA17_Chr3g0103201 | 25.424 | 236 | 148 | 6 | 64 | 292 | 5 | 219 | 1.73e-12 | 66.6 |
| Msa0071350 | MtrunA17_Chr1g0154131 | 24.916 | 297 | 187 | 7 | 3 | 282 | 181 | 458 | 7.38e-11 | 63.9 |
| Msa0071350 | MtrunA17_Chr1g0162441 | 33.036 | 112 | 68 | 3 | 7 | 111 | 5 | 116 | 7.97e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0071350 | AT3G18990.2 | 25.641 | 351 | 200 | 10 | 7 | 304 | 4 | 346 | 5.69e-21 | 94.4 |
| Msa0071350 | AT3G18990.1 | 25.806 | 341 | 192 | 10 | 7 | 294 | 4 | 336 | 9.70e-21 | 93.2 |
Find 67 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTGAGGTTGATTCGTTTC+TGG | 0.111519 | 1_2:+43131776 | None:intergenic |
| GTGTTCAACAAGAAATATTT+TGG | 0.156532 | 1_2:-43132971 | Msa0071350:CDS |
| GAACACCGTTTGGGAATTTA+AGG | 0.181202 | 1_2:+43132988 | None:intergenic |
| TTTGCCAAGTTTCTGAAATA+TGG | 0.185660 | 1_2:-43132903 | Msa0071350:CDS |
| ATTATCTGTTTGTTCTAATA+AGG | 0.215815 | 1_2:-43130730 | Msa0071350:CDS |
| GACATTATAATTTCAAAATA+AGG | 0.216590 | 1_2:+43132150 | None:intergenic |
| ATAGTAACATTGAATGAAAT+TGG | 0.236326 | 1_2:+43131813 | None:intergenic |
| AAATATTGTGGAGTTGAAAA+TGG | 0.256652 | 1_2:-43130931 | Msa0071350:CDS |
| CTCTTAACTTTCAAATTCTT+AGG | 0.273033 | 1_2:-43132876 | Msa0071350:CDS |
| TGGAGAGTAATGGTGATATT+TGG | 0.287546 | 1_2:-43132947 | Msa0071350:CDS |
| TATTTCTCCACATAAATCTT+AGG | 0.291278 | 1_2:+43133038 | None:intergenic |
| TTAAAGGGACTGCAACAATA+AGG | 0.291725 | 1_2:-43131983 | Msa0071350:CDS |
| AGATTTATGTGGAGAAATAT+TGG | 0.302749 | 1_2:-43133034 | Msa0071350:CDS |
| TTTGGGAATTTAAGGAATAT+AGG | 0.312034 | 1_2:+43132996 | None:intergenic |
| ATCATCAACAGATTTGATAT+TGG | 0.329912 | 1_2:+43132797 | None:intergenic |
| ATTTCTTGTTGAACACCGTT+TGG | 0.353826 | 1_2:+43132978 | None:intergenic |
| TTGGGAATTTAAGGAATATA+GGG | 0.355557 | 1_2:+43132997 | None:intergenic |
| TTATTAGAACAAACAGATAA+TGG | 0.369349 | 1_2:+43130732 | None:intergenic |
| TGGCAAAAGAAAAGTGAGTA+TGG | 0.382194 | 1_2:-43132643 | Msa0071350:CDS |
| ATAATTTATTTCTAAAGTAT+TGG | 0.389854 | 1_2:+43132821 | None:intergenic |
| CTGCAGATTCAGTAAAGGTT+GGG | 0.409562 | 1_2:-43130859 | Msa0071350:CDS |
| TTTCTTGTTGAACACCGTTT+GGG | 0.413820 | 1_2:+43132979 | None:intergenic |
| TAAAGGGACTGCAACAATAA+GGG | 0.414381 | 1_2:-43131982 | Msa0071350:CDS |
| GCATAAAACATTCAAGGTTA+TGG | 0.414778 | 1_2:-43131107 | Msa0071350:CDS |
| CGATTAAAGCTTCAGATGTT+GGG | 0.416702 | 1_2:+43132193 | None:intergenic |
| AAGATTATCCTATGAAAATC+TGG | 0.419859 | 1_2:+43133201 | None:intergenic |
| AAAGAATGCAAAGTGGAGAT+TGG | 0.426567 | 1_2:-43130825 | Msa0071350:CDS |
| AAAACCTAGGAATTTCTTTG+AGG | 0.431350 | 1_2:+43131761 | None:intergenic |
| TTACGCCAATGGTTATTACT+TGG | 0.435703 | 1_2:-43132121 | Msa0071350:intron |
| ACCAAAGGAGTTTATGAAAA+GGG | 0.442898 | 1_2:-43130964 | Msa0071350:CDS |
| AAGTATTATGAGAGTATTTG+TGG | 0.445350 | 1_2:-43130882 | Msa0071350:CDS |
| CAAGTTCAAAGAACTAGAAA+TGG | 0.448280 | 1_2:-43132663 | Msa0071350:CDS |
| TGTTCTCTTGAAAATATACT+TGG | 0.449633 | 1_2:+43132017 | None:intergenic |
| AATATTGTGGAGTTGAAAAT+GGG | 0.451536 | 1_2:-43130930 | Msa0071350:CDS |
| TCGATTAAAGCTTCAGATGT+TGG | 0.454021 | 1_2:+43132192 | None:intergenic |
| TCAACCTCAAAGAAATTCCT+AGG | 0.461027 | 1_2:-43131765 | Msa0071350:intron |
| ATATCCATATTTCAGAAACT+TGG | 0.480994 | 1_2:+43132899 | None:intergenic |
| AGTGATGAAGTGAGTGATAA+GGG | 0.491546 | 1_2:-43132711 | Msa0071350:CDS |
| GGACTCTGGAAGTGAGTTTG+AGG | 0.495977 | 1_2:-43131947 | Msa0071350:CDS |
| GCAAATTTGAGATGATTCAA+AGG | 0.505985 | 1_2:-43131839 | Msa0071350:CDS |
| GATGGAGCATAAAACATTCA+AGG | 0.521684 | 1_2:-43131113 | Msa0071350:CDS |
| CAATAAGGGTTGGTAAAGAA+AGG | 0.522250 | 1_2:-43131968 | Msa0071350:CDS |
| TACCAAAGGAGTTTATGAAA+AGG | 0.523215 | 1_2:-43130965 | Msa0071350:CDS |
| AAGTGATGAAGTGAGTGATA+AGG | 0.524193 | 1_2:-43132712 | Msa0071350:CDS |
| GGGATGTCATGAAAATATTG+TGG | 0.531604 | 1_2:-43130943 | Msa0071350:CDS |
| TTAACTTTCAAATTCTTAGG+TGG | 0.532981 | 1_2:-43132873 | Msa0071350:CDS |
| GAGGGTTCCTAAGATTTATG+TGG | 0.536061 | 1_2:-43133045 | Msa0071350:CDS |
| TGTGGCTGCAGATTCAGTAA+AGG | 0.538766 | 1_2:-43130864 | Msa0071350:CDS |
| ATATTCCTTAAATTCCCAAA+CGG | 0.544640 | 1_2:-43132993 | Msa0071350:CDS |
| GCTGCAGATTCAGTAAAGGT+TGG | 0.545755 | 1_2:-43130860 | Msa0071350:CDS |
| GTATTTGCAGGGTGTACCAA+AGG | 0.558528 | 1_2:-43130979 | Msa0071350:intron |
| GAGTGATAAGGGTTCAGATG+AGG | 0.561033 | 1_2:-43132700 | Msa0071350:CDS |
| ACTTACCAAGTAATAACCAT+TGG | 0.568490 | 1_2:+43132116 | None:intergenic |
| TACAAAAGGTCGTGATGTGA+TGG | 0.575558 | 1_2:-43131131 | Msa0071350:intron |
| AATATCAAATCTGTTGATGA+TGG | 0.577260 | 1_2:-43132795 | Msa0071350:CDS |
| TGCAGATTCAGTAAAGGTTG+GGG | 0.578364 | 1_2:-43130858 | Msa0071350:CDS |
| CCAAAGGAGTTTATGAAAAG+GGG | 0.581936 | 1_2:-43130963 | Msa0071350:CDS |
| TATGGTGAAGAATAGAGTCC+CGG | 0.582585 | 1_2:-43131089 | Msa0071350:intron |
| GGTTGGTAAAGAAAGGACTC+TGG | 0.588239 | 1_2:-43131961 | Msa0071350:CDS |
| AATCTTGTATGAGTGGTGGT+TGG | 0.588690 | 1_2:-43131905 | Msa0071350:CDS |
| GGGACTGCAACAATAAGGGT+TGG | 0.589089 | 1_2:-43131978 | Msa0071350:CDS |
| ATGTCACATACTTACGCCAA+TGG | 0.590674 | 1_2:-43132132 | Msa0071350:CDS |
| TATGTGGAGAAATATTGGAA+AGG | 0.599905 | 1_2:-43133029 | Msa0071350:CDS |
| ATTTATGAAAGAATGCAAAG+TGG | 0.609427 | 1_2:-43130832 | Msa0071350:CDS |
| TGAAAATGGGGAGAAAGTCA+TGG | 0.631530 | 1_2:-43130917 | Msa0071350:CDS |
| TGGAATATGTTGAAATGACA+TGG | 0.667913 | 1_2:+43133221 | None:intergenic |
| ATATTGTGGAGTTGAAAATG+GGG | 0.692849 | 1_2:-43130929 | Msa0071350:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATTTATTTCTAAAGTAT+TGG | + | chr1_2:43131114-43131133 | None:intergenic | 10.0% |
| !!! | TATGATAAACAAAATAATTT+TGG | - | chr1_2:43131608-43131627 | Msa0071350:intron | 10.0% |
| !!! | AAATAATCTTTAAATTTTTC+AGG | - | chr1_2:43131677-43131696 | Msa0071350:intron | 10.0% |
| !!! | TTCTTTTTTAGTTTTTTATT+TGG | - | chr1_2:43132201-43132220 | Msa0071350:CDS | 10.0% |
| !!! | TTTAGATTTTATTATTGTAA+AGG | - | chr1_2:43132410-43132429 | Msa0071350:intron | 10.0% |
| !!! | TTAGATTTTATTATTGTAAA+GGG | - | chr1_2:43132411-43132430 | Msa0071350:intron | 10.0% |
| !! | ATATTATTATTTCAAATTCA+CGG | + | chr1_2:43132584-43132603 | None:intergenic | 10.0% |
| !!! | TCAAATATATCTATATTTTT+TGG | - | chr1_2:43132730-43132749 | Msa0071350:CDS | 10.0% |
| !!! | CAAATATATCTATATTTTTT+GGG | - | chr1_2:43132731-43132750 | Msa0071350:CDS | 10.0% |
| !!! | ATATTTGGTTTCAAAAAAAT+TGG | - | chr1_2:43131000-43131019 | Msa0071350:intron | 15.0% |
| !!! | TATTTGGTTTCAAAAAAATT+GGG | - | chr1_2:43131001-43131020 | Msa0071350:intron | 15.0% |
| !!! | TATTTTAAGGTTAAGATATT+TGG | - | chr1_2:43131086-43131105 | Msa0071350:intron | 15.0% |
| !!! | ATTACTAATTTACTAGATTT+TGG | - | chr1_2:43131371-43131390 | Msa0071350:intron | 15.0% |
| !! | GACATTATAATTTCAAAATA+AGG | + | chr1_2:43131785-43131804 | None:intergenic | 15.0% |
| !!! | AAACTTATGAATGATTTTTA+TGG | - | chr1_2:43132507-43132526 | Msa0071350:intron | 15.0% |
| !!! | GTATTTCAAATTTAAGATTA+AGG | + | chr1_2:43132561-43132580 | None:intergenic | 15.0% |
| !! | TATTATTATTTCAAATTCAC+GGG | + | chr1_2:43132583-43132602 | None:intergenic | 15.0% |
| !! | ATTTGAATAGATTTATAGTT+AGG | + | chr1_2:43132716-43132735 | None:intergenic | 15.0% |
| !!! | TGTTCAACAAGAAATATTTT+GGG | - | chr1_2:43130962-43130981 | Msa0071350:CDS | 20.0% |
| !!! | TACTTTTTAAGAGTTATTCA+AGG | - | chr1_2:43131454-43131473 | Msa0071350:intron | 20.0% |
| !!! | ACTTTTTAAGAGTTATTCAA+GGG | - | chr1_2:43131455-43131474 | Msa0071350:intron | 20.0% |
| !!! | AACACTTGAACAATTTTAAA+GGG | - | chr1_2:43131934-43131953 | Msa0071350:CDS | 20.0% |
| !! | ATAGTAACATTGAATGAAAT+TGG | + | chr1_2:43132122-43132141 | None:intergenic | 20.0% |
| !!! | CAAGAAAATTTACTTTTGAA+TGG | + | chr1_2:43132362-43132381 | None:intergenic | 20.0% |
| !!! | TTCAAAAGTAAATTTTCTTG+AGG | - | chr1_2:43132362-43132381 | Msa0071350:intron | 20.0% |
| !!! | TCAAAAGTAAATTTTCTTGA+GGG | - | chr1_2:43132363-43132382 | Msa0071350:intron | 20.0% |
| !! | AGGATTAATTACATCAAATA+TGG | - | chr1_2:43132867-43132886 | Msa0071350:CDS | 20.0% |
| !!! | AATTTTTCATTTGTATTTGC+AGG | - | chr1_2:43132941-43132960 | Msa0071350:CDS | 20.0% |
| !!! | ATTTTTCATTTGTATTTGCA+GGG | - | chr1_2:43132942-43132961 | Msa0071350:CDS | 20.0% |
| !! | TTATTAGAACAAACAGATAA+TGG | + | chr1_2:43133203-43133222 | None:intergenic | 20.0% |
| !! | ATTATCTGTTTGTTCTAATA+AGG | - | chr1_2:43133202-43133221 | Msa0071350:CDS | 20.0% |
| !! | AACATATTCCAGATTTTCAT+AGG | - | chr1_2:43130723-43130742 | Msa0071350:CDS | 25.0% |
| ! | AAGATTATCCTATGAAAATC+TGG | + | chr1_2:43130734-43130753 | None:intergenic | 25.0% |
| ! | TATTTCTCCACATAAATCTT+AGG | + | chr1_2:43130897-43130916 | None:intergenic | 25.0% |
| ! | AGATTTATGTGGAGAAATAT+TGG | - | chr1_2:43130898-43130917 | Msa0071350:CDS | 25.0% |
| ! | TTGGGAATTTAAGGAATATA+GGG | + | chr1_2:43130938-43130957 | None:intergenic | 25.0% |
| ! | TTTGGGAATTTAAGGAATAT+AGG | + | chr1_2:43130939-43130958 | None:intergenic | 25.0% |
| ! | ATATTCCTTAAATTCCCAAA+CGG | - | chr1_2:43130939-43130958 | Msa0071350:CDS | 25.0% |
| !! | GTGTTCAACAAGAAATATTT+TGG | - | chr1_2:43130961-43130980 | Msa0071350:CDS | 25.0% |
| ! | ATATCCATATTTCAGAAACT+TGG | + | chr1_2:43131036-43131055 | None:intergenic | 25.0% |
| ! | CTCTTAACTTTCAAATTCTT+AGG | - | chr1_2:43131056-43131075 | Msa0071350:intron | 25.0% |
| ! | TTAACTTTCAAATTCTTAGG+TGG | - | chr1_2:43131059-43131078 | Msa0071350:intron | 25.0% |
| ! | ATCATCAACAGATTTGATAT+TGG | + | chr1_2:43131138-43131157 | None:intergenic | 25.0% |
| !! | AATATCAAATCTGTTGATGA+TGG | - | chr1_2:43131137-43131156 | Msa0071350:intron | 25.0% |
| !!! | TGAGTTTTCTCTCTTTATTT+TGG | - | chr1_2:43131343-43131362 | Msa0071350:intron | 25.0% |
| !!! | TTGCAATTTTTTTGTCTGAA+AGG | - | chr1_2:43131482-43131501 | Msa0071350:intron | 25.0% |
| !! | TAAACCATTATTTGAAACAG+TGG | - | chr1_2:43131889-43131908 | Msa0071350:CDS | 25.0% |
| ! | TGTTCTCTTGAAAATATACT+TGG | + | chr1_2:43131918-43131937 | None:intergenic | 25.0% |
| !! | GAACACTTGAACAATTTTAA+AGG | - | chr1_2:43131933-43131952 | Msa0071350:CDS | 25.0% |
| ! | AAGAAAAAATCTTGTATGAG+TGG | - | chr1_2:43132020-43132039 | Msa0071350:CDS | 25.0% |
| ! | AAAGAAAGAAAGAAAAACCT+AGG | + | chr1_2:43132187-43132206 | None:intergenic | 25.0% |
| !! | TATTTCTTTTATCCATGACA+AGG | - | chr1_2:43132279-43132298 | Msa0071350:intron | 25.0% |
| !! | TGAATGATTTTTATGGTTCT+TGG | - | chr1_2:43132514-43132533 | Msa0071350:intron | 25.0% |
| !!! | AACTTTTTGATAGTTAGTGA+TGG | - | chr1_2:43132648-43132667 | Msa0071350:CDS | 25.0% |
| ! | TTTGATGTAATTAATCCTAC+CGG | + | chr1_2:43132865-43132884 | None:intergenic | 25.0% |
| ! | AAATATTGTGGAGTTGAAAA+TGG | - | chr1_2:43133001-43133020 | Msa0071350:CDS | 25.0% |
| ! | AATATTGTGGAGTTGAAAAT+GGG | - | chr1_2:43133002-43133021 | Msa0071350:CDS | 25.0% |
| !!! | AAGTATTATGAGAGTATTTG+TGG | - | chr1_2:43133050-43133069 | Msa0071350:intron | 25.0% |
| ! | ATTTATGAAAGAATGCAAAG+TGG | - | chr1_2:43133100-43133119 | Msa0071350:intron | 25.0% |
| !! | GTTTTTGATGTTTCAATTGA+AGG | - | chr1_2:43133170-43133189 | Msa0071350:intron | 25.0% |
| TTTGAATTTCTTTGTTGCAG+AGG | - | chr1_2:43130868-43130887 | Msa0071350:CDS | 30.0% | |
| TTGAATTTCTTTGTTGCAGA+GGG | - | chr1_2:43130869-43130888 | Msa0071350:CDS | 30.0% | |
| TATGTGGAGAAATATTGGAA+AGG | - | chr1_2:43130903-43130922 | Msa0071350:CDS | 30.0% | |
| !! | TCAACAAGAAATATTTTGGG+TGG | - | chr1_2:43130965-43130984 | Msa0071350:CDS | 30.0% |
| !! | TTTGCCAAGTTTCTGAAATA+TGG | - | chr1_2:43131029-43131048 | Msa0071350:intron | 30.0% |
| ! | CTTAGGTGGATCATATTTTA+AGG | - | chr1_2:43131073-43131092 | Msa0071350:intron | 30.0% |
| ! | ACTTTCATGAACTTCTTTTG+TGG | + | chr1_2:43131204-43131223 | None:intergenic | 30.0% |
| CAAGTTCAAAGAACTAGAAA+TGG | - | chr1_2:43131269-43131288 | Msa0071350:intron | 30.0% | |
| ACTTACCAAGTAATAACCAT+TGG | + | chr1_2:43131819-43131838 | None:intergenic | 30.0% | |
| GTATCCACTGTTTCAAATAA+TGG | + | chr1_2:43131896-43131915 | None:intergenic | 30.0% | |
| AAAAAATCTTGTATGAGTGG+TGG | - | chr1_2:43132023-43132042 | Msa0071350:CDS | 30.0% | |
| ! | GCAAATTTGAGATGATTCAA+AGG | - | chr1_2:43132093-43132112 | Msa0071350:intron | 30.0% |
| AAAACCTAGGAATTTCTTTG+AGG | + | chr1_2:43132174-43132193 | None:intergenic | 30.0% | |
| TATCCATGACAAGGTTATAA+AGG | - | chr1_2:43132288-43132307 | Msa0071350:intron | 30.0% | |
| ATCCATGACAAGGTTATAAA+GGG | - | chr1_2:43132289-43132308 | Msa0071350:intron | 30.0% | |
| TGTGTTTATGCATGTACAAA+AGG | - | chr1_2:43132787-43132806 | Msa0071350:CDS | 30.0% | |
| GCATAAAACATTCAAGGTTA+TGG | - | chr1_2:43132825-43132844 | Msa0071350:CDS | 30.0% | |
| TTGATGTAATTAATCCTACC+GGG | + | chr1_2:43132864-43132883 | None:intergenic | 30.0% | |
| TACCAAAGGAGTTTATGAAA+AGG | - | chr1_2:43132967-43132986 | Msa0071350:CDS | 30.0% | |
| ACCAAAGGAGTTTATGAAAA+GGG | - | chr1_2:43132968-43132987 | Msa0071350:CDS | 30.0% | |
| ATATTGTGGAGTTGAAAATG+GGG | - | chr1_2:43133003-43133022 | Msa0071350:CDS | 30.0% | |
| TTTCTTGTTGAACACCGTTT+GGG | + | chr1_2:43130956-43130975 | None:intergenic | 35.0% | |
| ATTTCTTGTTGAACACCGTT+TGG | + | chr1_2:43130957-43130976 | None:intergenic | 35.0% | |
| !! | ATATTTTGGGTGGAGAGTAA+TGG | - | chr1_2:43130975-43130994 | Msa0071350:intron | 35.0% |
| TGGAGAGTAATGGTGATATT+TGG | - | chr1_2:43130985-43131004 | Msa0071350:intron | 35.0% | |
| ! | ACTTTCTTGACCTCTTTTTG+TGG | + | chr1_2:43131171-43131190 | None:intergenic | 35.0% |
| AAGTGATGAAGTGAGTGATA+AGG | - | chr1_2:43131220-43131239 | Msa0071350:intron | 35.0% | |
| AGTGATGAAGTGAGTGATAA+GGG | - | chr1_2:43131221-43131240 | Msa0071350:intron | 35.0% | |
| TGGCAAAAGAAAAGTGAGTA+TGG | - | chr1_2:43131289-43131308 | Msa0071350:intron | 35.0% | |
| ! | TGAGAATTTTTGTTGGGTAG+TGG | + | chr1_2:43131321-43131340 | None:intergenic | 35.0% |
| ACTACCCAACAAAAATTCTC+AGG | - | chr1_2:43131320-43131339 | Msa0071350:intron | 35.0% | |
| ! | CTCACCTGAGAATTTTTGTT+GGG | + | chr1_2:43131327-43131346 | None:intergenic | 35.0% |
| ! | ACTCACCTGAGAATTTTTGT+TGG | + | chr1_2:43131328-43131347 | None:intergenic | 35.0% |
| CGATTAAAGCTTCAGATGTT+GGG | + | chr1_2:43131742-43131761 | None:intergenic | 35.0% | |
| TCGATTAAAGCTTCAGATGT+TGG | + | chr1_2:43131743-43131762 | None:intergenic | 35.0% | |
| TTACGCCAATGGTTATTACT+TGG | - | chr1_2:43131811-43131830 | Msa0071350:CDS | 35.0% | |
| TTAAAGGGACTGCAACAATA+AGG | - | chr1_2:43131949-43131968 | Msa0071350:CDS | 35.0% | |
| TAAAGGGACTGCAACAATAA+GGG | - | chr1_2:43131950-43131969 | Msa0071350:CDS | 35.0% | |
| !! | CAATAAGGGTTGGTAAAGAA+AGG | - | chr1_2:43131964-43131983 | Msa0071350:CDS | 35.0% |
| TCAACCTCAAAGAAATTCCT+AGG | - | chr1_2:43132167-43132186 | Msa0071350:CDS | 35.0% | |
| ATCCCTTTATAACCTTGTCA+TGG | + | chr1_2:43132294-43132313 | None:intergenic | 35.0% | |
| GATGGAGCATAAAACATTCA+AGG | - | chr1_2:43132819-43132838 | Msa0071350:CDS | 35.0% | |
| CCAAAGGAGTTTATGAAAAG+GGG | - | chr1_2:43132969-43132988 | Msa0071350:CDS | 35.0% | |
| GGGATGTCATGAAAATATTG+TGG | - | chr1_2:43132989-43133008 | Msa0071350:CDS | 35.0% | |
| AAAGAATGCAAAGTGGAGAT+TGG | - | chr1_2:43133107-43133126 | Msa0071350:intron | 35.0% | |
| GAGGGTTCCTAAGATTTATG+TGG | - | chr1_2:43130887-43130906 | Msa0071350:CDS | 40.0% | |
| GAACACCGTTTGGGAATTTA+AGG | + | chr1_2:43130947-43130966 | None:intergenic | 40.0% | |
| AGGTAGTAACAAAGTAGCCA+TGG | - | chr1_2:43131697-43131716 | Msa0071350:intron | 40.0% | |
| !! | TTTTCTAGCCTTCTTCACCA+TGG | + | chr1_2:43131717-43131736 | None:intergenic | 40.0% |
| ATGTCACATACTTACGCCAA+TGG | - | chr1_2:43131800-43131819 | Msa0071350:CDS | 40.0% | |
| AATCTTGTATGAGTGGTGGT+TGG | - | chr1_2:43132027-43132046 | Msa0071350:intron | 40.0% | |
| !! | CTTTGAGGTTGATTCGTTTC+TGG | + | chr1_2:43132159-43132178 | None:intergenic | 40.0% |
| GGTTATAAAGGGATCTCTTG+TGG | - | chr1_2:43132300-43132319 | Msa0071350:intron | 40.0% | |
| GATCTCTTGTGGTGTAAAGA+AGG | - | chr1_2:43132311-43132330 | Msa0071350:intron | 40.0% | |
| GTAAAGAAGGAAGACATTGC+AGG | - | chr1_2:43132324-43132343 | Msa0071350:intron | 40.0% | |
| AAGACATTGCAGGAACTTCT+AGG | - | chr1_2:43132334-43132353 | Msa0071350:intron | 40.0% | |
| TACAAAAGGTCGTGATGTGA+TGG | - | chr1_2:43132801-43132820 | Msa0071350:CDS | 40.0% | |
| TATGGTGAAGAATAGAGTCC+CGG | - | chr1_2:43132843-43132862 | Msa0071350:CDS | 40.0% | |
| ! | CCCCTTTTCATAAACTCCTT+TGG | + | chr1_2:43132972-43132991 | None:intergenic | 40.0% |
| TGAAAATGGGGAGAAAGTCA+TGG | - | chr1_2:43133015-43133034 | Msa0071350:CDS | 40.0% | |
| CTGCAGATTCAGTAAAGGTT+GGG | - | chr1_2:43133073-43133092 | Msa0071350:intron | 40.0% | |
| TGCAGATTCAGTAAAGGTTG+GGG | - | chr1_2:43133074-43133093 | Msa0071350:intron | 40.0% | |
| GAGTGATAAGGGTTCAGATG+AGG | - | chr1_2:43131232-43131251 | Msa0071350:intron | 45.0% | |
| CAAAGTAGCCATGGTGAAGA+AGG | - | chr1_2:43131706-43131725 | Msa0071350:intron | 45.0% | |
| !! | GGTTGGTAAAGAAAGGACTC+TGG | - | chr1_2:43131971-43131990 | Msa0071350:CDS | 45.0% |
| GTATTTGCAGGGTGTACCAA+AGG | - | chr1_2:43132953-43132972 | Msa0071350:CDS | 45.0% | |
| TGTGGCTGCAGATTCAGTAA+AGG | - | chr1_2:43133068-43133087 | Msa0071350:intron | 45.0% | |
| GCTGCAGATTCAGTAAAGGT+TGG | - | chr1_2:43133072-43133091 | Msa0071350:intron | 45.0% | |
| !!! | AAAAAAAATCTAATTTTTAT+AGG | + | chr1_2:43131565-43131584 | None:intergenic | 5.0% |
| !!! | TAAAAATTAGATTTTTTTTA+AGG | - | chr1_2:43131566-43131585 | Msa0071350:intron | 5.0% |
| !! | TATATATATATATTTGAATT+TGG | - | chr1_2:43132479-43132498 | Msa0071350:intron | 5.0% |
| !!! | TATTTATTTTTTTTTTTTGA+AGG | - | chr1_2:43132601-43132620 | Msa0071350:CDS | 5.0% |
| ! | GGTGCTGAAGCCACAAAAAG+AGG | - | chr1_2:43131158-43131177 | Msa0071350:intron | 50.0% |
| GGGACTGCAACAATAAGGGT+TGG | - | chr1_2:43131954-43131973 | Msa0071350:CDS | 50.0% | |
| ! | GGACTCTGGAAGTGAGTTTG+AGG | - | chr1_2:43131985-43132004 | Msa0071350:CDS | 50.0% |
| GTGAAGAATAGAGTCCCGGT+AGG | - | chr1_2:43132847-43132866 | Msa0071350:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 43130713 | 43133241 | 43130713 | ID=Msa0071350;Name=Msa0071350 |
| chr1_2 | mRNA | 43130713 | 43133241 | 43130713 | ID=Msa0071350-mRNA-1;Parent=Msa0071350;Name=Msa0071350-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|0.8|0.83|6|0|418 |
| chr1_2 | exon | 43133185 | 43133241 | 43133185 | ID=Msa0071350-mRNA-1:exon:13032;Parent=Msa0071350-mRNA-1 |
| chr1_2 | exon | 43132590 | 43133066 | 43132590 | ID=Msa0071350-mRNA-1:exon:13031;Parent=Msa0071350-mRNA-1 |
| chr1_2 | exon | 43132122 | 43132229 | 43132122 | ID=Msa0071350-mRNA-1:exon:13030;Parent=Msa0071350-mRNA-1 |
| chr1_2 | exon | 43131766 | 43132045 | 43131766 | ID=Msa0071350-mRNA-1:exon:13029;Parent=Msa0071350-mRNA-1 |
| chr1_2 | exon | 43131090 | 43131145 | 43131090 | ID=Msa0071350-mRNA-1:exon:13028;Parent=Msa0071350-mRNA-1 |
| chr1_2 | exon | 43130713 | 43130991 | 43130713 | ID=Msa0071350-mRNA-1:exon:13027;Parent=Msa0071350-mRNA-1 |
| chr1_2 | CDS | 43133185 | 43133241 | 43133185 | ID=Msa0071350-mRNA-1:cds;Parent=Msa0071350-mRNA-1 |
| chr1_2 | CDS | 43132590 | 43133066 | 43132590 | ID=Msa0071350-mRNA-1:cds;Parent=Msa0071350-mRNA-1 |
| chr1_2 | CDS | 43132122 | 43132229 | 43132122 | ID=Msa0071350-mRNA-1:cds;Parent=Msa0071350-mRNA-1 |
| chr1_2 | CDS | 43131766 | 43132045 | 43131766 | ID=Msa0071350-mRNA-1:cds;Parent=Msa0071350-mRNA-1 |
| chr1_2 | CDS | 43131090 | 43131145 | 43131090 | ID=Msa0071350-mRNA-1:cds;Parent=Msa0071350-mRNA-1 |
| chr1_2 | CDS | 43130713 | 43130991 | 43130713 | ID=Msa0071350-mRNA-1:cds;Parent=Msa0071350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
