AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0071870

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0071870 MtrunA17_Chr2g0329031 41.813 342 180 4 210 541 358 690 1.09e-87 286
Msa0071870 MtrunA17_Chr2g0329031 47.668 193 94 3 25 216 6 192 3.62e-47 176
Msa0071870 MtrunA17_Chr1g0207551 48.026 304 156 1 177 480 352 653 2.09e-83 276
Msa0071870 MtrunA17_Chr1g0207551 45.213 188 101 1 25 210 26 213 6.32e-45 170
Msa0071870 MtrunA17_Chr3g0080351 41.333 375 192 6 115 487 345 693 1.61e-79 266
Msa0071870 MtrunA17_Chr3g0080351 43.216 199 73 3 32 213 75 250 6.30e-42 161
Msa0071870 MtrunA17_Chr5g0448761 35.714 280 172 3 213 486 423 700 1.17e-55 200
Msa0071870 MtrunA17_Chr5g0448761 37.313 201 110 5 22 213 55 248 1.71e-28 120
Msa0071870 MtrunA17_Chr5g0448511 35.055 271 168 3 213 477 195 463 2.35e-53 190
Msa0071870 MtrunA17_Chr2g0291581 39.033 269 150 5 213 469 412 678 6.93e-52 188
Msa0071870 MtrunA17_Chr2g0291581 30.387 181 116 3 33 213 71 241 5.39e-16 81.3
Msa0071870 MtrunA17_Chr3g0118611 33.234 337 193 6 210 529 298 619 2.55e-46 173
Msa0071870 MtrunA17_Chr5g0440451 35.714 280 171 5 213 487 404 679 7.99e-46 173
Msa0071870 MtrunA17_Chr2g0296781 34.891 321 161 9 213 506 348 647 9.88e-44 166
Msa0071870 MtrunA17_Chr2g0296781 32.961 179 116 2 37 213 1 177 1.96e-22 101
Msa0071870 MtrunA17_Chr6g0477261 33.981 309 180 6 213 506 237 536 1.69e-43 164
Msa0071870 MtrunA17_Chr1g0196541 30.312 353 191 7 199 522 334 660 5.42e-38 149
Msa0071870 MtrunA17_Chr1g0196541 28.333 180 123 2 37 213 1 177 6.19e-16 81.3
Msa0071870 MtrunA17_Chr5g0441581 33.704 270 166 6 208 469 371 635 3.43e-37 146
Msa0071870 MtrunA17_Chr5g0441581 27.016 248 157 7 32 268 31 265 7.65e-16 80.9
Msa0071870 MtrunA17_Chr1g0202341 33.171 205 134 2 213 416 407 609 1.33e-32 132
Msa0071870 MtrunA17_Chr1g0202341 29.384 211 130 5 16 210 25 232 4.40e-20 94.4
Msa0071870 MtrunA17_Chr1g0198761 32.188 320 184 8 213 518 414 714 3.32e-30 125
Msa0071870 MtrunA17_Chr2g0287061 35.573 253 146 4 223 466 509 753 6.58e-29 122
Msa0071870 MtrunA17_Chr2g0287061 29.268 123 78 1 8 130 4 117 3.83e-11 66.2
Msa0071870 MtrunA17_Chr2g0287061 33.645 107 62 1 24 130 174 271 6.54e-11 65.5
Msa0071870 MtrunA17_Chr3g0082121 30.952 252 164 4 223 468 400 647 1.95e-28 120
Msa0071870 MtrunA17_Chr3g0082121 28.718 195 125 4 33 221 43 229 1.16e-12 70.9
Msa0071870 MtrunA17_Chr2g0324011 31.731 208 139 2 210 416 363 568 4.60e-27 115
Msa0071870 MtrunA17_Chr2g0324011 27.749 191 129 5 32 215 9 197 1.22e-15 80.1
Msa0071870 MtrunA17_Chr8g0363841 32.227 211 137 4 226 430 384 594 3.48e-25 110
Msa0071870 MtrunA17_Chr8g0363841 24.084 191 140 3 25 210 9 199 3.81e-11 65.9
Msa0071870 MtrunA17_Chr2g0276841 28.077 260 172 4 209 459 417 670 4.22e-22 100
Msa0071870 MtrunA17_Chr2g0276841 26.190 210 130 8 3 199 50 247 7.05e-14 74.7
Msa0071870 MtrunA17_Chr2g0294841 26.316 342 203 8 208 519 405 727 9.45e-22 99.8
Msa0071870 MtrunA17_Chr6g0458391 29.381 194 137 0 223 416 572 765 2.72e-21 98.2
Msa0071870 MtrunA17_Chr6g0458391 40.196 102 57 1 33 130 225 326 2.83e-14 75.9
Msa0071870 MtrunA17_Chr6g0458391 34.167 120 75 2 33 148 91 210 3.34e-12 69.3
Msa0071870 MtrunA17_Chr1g0203721 25.430 291 208 3 184 468 393 680 2.90e-21 98.2
Msa0071870 MtrunA17_Chr1g0203721 28.415 183 124 3 35 210 65 247 1.09e-13 74.3
Msa0071870 MtrunA17_Chr2g0291591 37.398 123 77 0 227 349 427 549 3.93e-21 97.1
Msa0071870 MtrunA17_Chr2g0291591 28.804 184 131 0 27 210 58 241 1.12e-16 83.2
Msa0071870 MtrunA17_Chr2g0287651 26.906 223 159 3 208 428 424 644 6.99e-21 97.1
Msa0071870 MtrunA17_Chr2g0287651 31.308 214 125 6 35 231 77 285 1.03e-20 96.7
Msa0071870 MtrunA17_Chr7g0258861 28.788 198 134 4 25 215 1 198 2.38e-19 89.0
Msa0071870 MtrunA17_Chr7g0233911 39.474 114 64 1 25 133 26 139 2.77e-19 86.7
Msa0071870 MtrunA17_Chr2g0308841 25.778 225 157 4 194 413 5 224 1.30e-18 85.9
Msa0071870 MtrunA17_Chr2g0290391 30.677 251 156 6 212 459 420 655 1.30e-18 89.7
Msa0071870 MtrunA17_Chr6g0451441 29.000 200 133 3 1 194 51 247 5.48e-17 84.0
Msa0071870 MtrunA17_Chr2g0329361 34.906 106 63 1 32 131 60 165 1.38e-16 79.7
Msa0071870 MtrunA17_Chr3g0078041 35.780 109 65 1 28 131 45 153 1.02e-15 76.6
Msa0071870 MtrunA17_Chr1g0203051 23.874 222 159 4 188 404 406 622 3.70e-15 78.6
Msa0071870 MtrunA17_Chr1g0203051 25.551 227 149 8 22 231 64 287 3.41e-11 65.9
Msa0071870 MtrunA17_Chr4g0033611 33.043 115 72 2 22 132 65 178 3.73e-12 66.6
Msa0071870 MtrunA17_Chr5g0431001 29.146 199 123 6 26 206 52 250 1.71e-11 66.6
Msa0071870 MtrunA17_Chr2g0329421 29.197 137 84 4 29 153 23 158 6.63e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0071870 AT3G22170.2 43.731 327 168 3 155 481 372 682 2.54e-86 285
Msa0071870 AT3G22170.2 41.206 199 78 3 32 213 69 245 2.04e-41 160
Msa0071870 AT3G22170.1 43.731 327 168 3 155 481 372 682 2.54e-86 285
Msa0071870 AT3G22170.1 41.206 199 78 3 32 213 69 245 2.04e-41 160
Msa0071870 AT4G15090.1 48.889 270 136 1 210 479 405 672 1.37e-85 283
Msa0071870 AT4G15090.1 36.364 275 142 6 20 284 42 293 2.08e-48 180
Msa0071870 AT4G15090.5 48.889 270 136 1 210 479 405 672 1.37e-85 283
Msa0071870 AT4G15090.5 36.364 275 142 6 20 284 42 293 2.08e-48 180
Msa0071870 AT4G15090.3 48.889 270 136 1 210 479 405 672 1.37e-85 283
Msa0071870 AT4G15090.3 36.364 275 142 6 20 284 42 293 2.08e-48 180
Msa0071870 AT4G15090.2 48.889 270 136 1 210 479 405 672 1.37e-85 283
Msa0071870 AT4G15090.2 36.364 275 142 6 20 284 42 293 2.08e-48 180
Msa0071870 AT4G15090.4 48.889 270 136 1 210 479 405 672 1.37e-85 283
Msa0071870 AT4G15090.4 36.364 275 142 6 20 284 42 293 2.08e-48 180
Msa0071870 AT1G76320.3 45.421 273 145 2 210 482 342 610 5.69e-83 272
Msa0071870 AT1G76320.3 39.370 254 122 6 37 284 1 228 4.27e-44 166
Msa0071870 AT1G76320.2 45.421 273 145 2 210 482 342 610 1.72e-82 273
Msa0071870 AT1G76320.2 39.370 254 122 6 37 284 1 228 5.92e-44 167
Msa0071870 AT1G76320.1 45.421 273 145 2 210 482 342 610 1.81e-82 273
Msa0071870 AT1G76320.1 39.370 254 122 6 37 284 1 228 6.74e-44 166
Msa0071870 AT1G76320.4 45.421 273 145 2 210 482 342 610 1.81e-82 273
Msa0071870 AT1G76320.4 39.370 254 122 6 37 284 1 228 6.74e-44 166
Msa0071870 AT4G19990.1 44.867 263 140 3 210 469 296 556 2.27e-63 220
Msa0071870 AT4G19990.1 38.554 83 34 1 70 135 1 83 2.43e-11 67.0
Msa0071870 AT4G19990.5 44.867 263 140 3 210 469 353 613 4.64e-63 221
Msa0071870 AT4G19990.5 45.299 117 47 1 36 135 24 140 1.23e-24 108
Msa0071870 AT4G19990.3 44.867 263 140 3 210 469 353 613 4.95e-63 221
Msa0071870 AT4G19990.3 45.299 117 47 1 36 135 24 140 1.18e-24 108
Msa0071870 AT4G19990.4 44.867 263 140 3 210 469 353 613 4.95e-63 221
Msa0071870 AT4G19990.4 45.299 117 47 1 36 135 24 140 1.18e-24 108
Msa0071870 AT4G19990.7 44.867 263 140 3 210 469 367 627 6.63e-63 220
Msa0071870 AT4G19990.7 45.299 117 47 1 36 135 38 154 1.28e-24 108
Msa0071870 AT4G19990.6 44.867 263 140 3 210 469 353 613 7.08e-63 220
Msa0071870 AT4G19990.6 45.299 117 47 1 36 135 24 140 1.42e-24 108
Msa0071870 AT4G19990.2 44.867 263 140 3 210 469 353 613 7.08e-63 220
Msa0071870 AT4G19990.2 45.299 117 47 1 36 135 24 140 1.42e-24 108
Msa0071870 AT2G32250.5 39.098 266 160 1 213 478 352 615 2.67e-53 194
Msa0071870 AT2G32250.5 63.265 98 35 1 36 132 41 138 4.07e-33 135
Msa0071870 AT2G32250.7 39.098 266 160 1 213 478 311 574 3.99e-53 193
Msa0071870 AT2G32250.7 62.887 97 35 1 37 132 1 97 3.18e-32 132
Msa0071870 AT2G32250.8 39.098 266 160 1 213 478 311 574 4.20e-53 193
Msa0071870 AT2G32250.8 62.887 97 35 1 37 132 1 97 3.16e-32 132
Msa0071870 AT2G32250.6 39.098 266 160 1 213 478 352 615 4.36e-53 194
Msa0071870 AT2G32250.6 63.265 98 35 1 36 132 41 138 4.52e-33 135
Msa0071870 AT2G32250.1 39.098 266 160 1 213 478 352 615 4.36e-53 194
Msa0071870 AT2G32250.1 63.265 98 35 1 36 132 41 138 4.52e-33 135
Msa0071870 AT2G32250.3 39.098 266 160 1 213 478 352 615 4.36e-53 194
Msa0071870 AT2G32250.3 63.265 98 35 1 36 132 41 138 4.52e-33 135
Msa0071870 AT2G32250.2 39.098 266 160 1 213 478 352 615 4.46e-53 193
Msa0071870 AT2G32250.2 63.265 98 35 1 36 132 41 138 4.84e-33 135
Msa0071870 AT2G32250.4 39.098 266 160 1 213 478 352 615 4.46e-53 193
Msa0071870 AT2G32250.4 63.265 98 35 1 36 132 41 138 4.84e-33 135
Msa0071870 AT4G38180.1 35.231 281 173 4 210 483 429 707 8.84e-53 192
Msa0071870 AT4G38180.1 36.842 190 111 3 32 213 72 260 7.98e-29 122
Msa0071870 AT1G52520.1 36.531 271 154 5 213 469 428 694 1.93e-47 176
Msa0071870 AT1G52520.1 29.348 184 117 5 33 213 85 258 1.51e-12 70.9
Msa0071870 AT2G27110.3 36.531 271 159 7 213 477 234 497 4.18e-46 172
Msa0071870 AT2G27110.2 36.531 271 159 7 213 477 379 642 9.25e-46 173
Msa0071870 AT2G27110.1 36.531 271 159 7 213 477 379 642 9.25e-46 173
Msa0071870 AT4G38170.1 33.594 256 165 4 221 471 202 457 2.96e-44 165
Msa0071870 AT1G80010.1 31.852 270 167 9 212 471 452 714 3.49e-35 141
Msa0071870 AT1G80010.1 29.808 208 137 4 14 213 76 282 6.51e-14 75.1
Msa0071870 AT3G06250.2 31.818 264 170 5 213 472 505 762 7.28e-33 134
Msa0071870 AT3G06250.2 35.644 101 56 1 32 132 189 280 6.24e-11 65.9
Msa0071870 AT3G06250.1 31.818 264 170 5 213 472 505 762 7.28e-33 134
Msa0071870 AT3G06250.1 35.644 101 56 1 32 132 189 280 6.24e-11 65.9
Msa0071870 AT3G06250.3 31.818 264 170 5 213 472 505 762 7.28e-33 134
Msa0071870 AT3G06250.3 35.644 101 56 1 32 132 189 280 6.24e-11 65.9
Msa0071870 AT5G18960.2 37.438 203 121 3 213 414 529 726 8.71e-33 134
Msa0071870 AT5G18960.2 36.634 101 55 1 32 132 210 301 2.93e-11 67.0
Msa0071870 AT5G18960.1 37.438 203 121 3 213 414 529 726 8.71e-33 134
Msa0071870 AT5G18960.1 36.634 101 55 1 32 132 210 301 2.93e-11 67.0
Msa0071870 AT1G10240.2 27.368 285 185 4 209 484 395 666 3.23e-24 107
Msa0071870 AT1G10240.2 27.128 188 122 6 25 199 40 225 3.03e-11 66.6
Msa0071870 AT1G10240.1 27.368 285 185 4 209 484 395 666 3.23e-24 107
Msa0071870 AT1G10240.1 27.128 188 122 6 25 199 40 225 3.03e-11 66.6
Msa0071870 AT5G28530.4 27.523 218 145 5 200 414 349 556 7.74e-16 81.3
Msa0071870 AT5G28530.1 27.523 218 145 5 200 414 412 619 1.39e-15 80.5
Msa0071870 AT5G28530.5 26.606 218 143 5 200 414 349 552 7.63e-15 78.2
Msa0071870 AT5G28530.3 26.606 218 143 5 200 414 412 615 1.22e-14 77.4
Msa0071870 AT5G28530.2 26.606 218 143 5 200 414 412 615 1.22e-14 77.4
Msa0071870 AT3G07500.1 36.937 111 66 1 26 132 26 136 3.02e-14 72.4
Msa0071870 AT2G43280.1 32.692 104 65 1 32 130 21 124 3.50e-14 72.0
Msa0071870 AT4G12850.4 36.697 109 65 2 23 130 4 109 6.74e-14 69.7
Msa0071870 AT4G12850.2 36.697 109 65 2 23 130 4 109 7.31e-14 69.3
Msa0071870 AT4G12850.1 36.697 109 65 2 23 130 4 109 1.24e-13 70.1
Msa0071870 AT3G59470.3 33.913 115 71 2 22 132 59 172 1.33e-13 71.2
Msa0071870 AT3G59470.1 33.913 115 71 2 22 132 59 172 1.33e-13 71.2
Msa0071870 AT3G59470.2 33.913 115 71 2 22 132 71 184 1.69e-13 71.2

Find 90 sgRNAs with CRISPR-Local

Find 318 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATATTCGACTTTGGTAAT+AGG 0.198144 1_2:-44184285 Msa0071870:CDS
TGTCGTTTGTTTGAGTATAA+TGG 0.211600 1_2:-44184211 Msa0071870:CDS
AAAGAAGATGTGATGGAAAA+TGG 0.230746 1_2:-44185527 Msa0071870:CDS
GTTGAAATTACGGGATTATC+TGG 0.272233 1_2:-44184355 Msa0071870:CDS
ATGAAGTTGCTTTGGAAGAT+AGG 0.282489 1_2:-44184501 Msa0071870:CDS
CTCATATCCTCTGTGTTGTT+TGG 0.283994 1_2:+44185347 None:intergenic
GAGCTTTATTGATGGTTCTA+TGG 0.285932 1_2:+44185436 None:intergenic
GTCGTTTGTTTGAGTATAAT+GGG 0.305476 1_2:-44184210 Msa0071870:CDS
AAATATGCTTGCACACGATA+TGG 0.308453 1_2:-44185624 Msa0071870:CDS
ATCTGCTGGTAGCGTGAAAA+AGG 0.314700 1_2:-44183780 Msa0071870:intron
AATATTCGACTTTGGTAATA+GGG 0.349086 1_2:-44184284 Msa0071870:CDS
ATTTCAACTATCATACTTAG+AGG 0.356032 1_2:-44184692 Msa0071870:CDS
AAGGCTGCAATCGTTGAAAA+AGG 0.356969 1_2:-44183662 Msa0071870:CDS
ATCATATGTTGGTGATTTAG+AGG 0.360736 1_2:-44185799 Msa0071870:CDS
CGTCGTTTGAATTTAGAATC+TGG 0.368832 1_2:-44185276 Msa0071870:CDS
CAACAAAGATACCACAATAT+TGG 0.380079 1_2:+44184158 None:intergenic
ATATGAGAAAGTTGGTTGCT+TGG 0.385751 1_2:-44185331 Msa0071870:CDS
AAGTTCCAAGTTGAAATTAC+GGG 0.388019 1_2:-44184364 Msa0071870:CDS
AAAGTATCTTTCATGTAAAC+AGG 0.390769 1_2:+44184625 None:intergenic
AAAGTTCCAAGTTGAAATTA+CGG 0.393399 1_2:-44184365 Msa0071870:CDS
TCCAACAATTGAGAGACTTT+CGG 0.395389 1_2:+44184022 None:intergenic
TGAAGATATTTGTTCGAAGA+AGG 0.400896 1_2:-44184065 Msa0071870:CDS
ATTCTGCTGAGCTTTATTGA+TGG 0.407897 1_2:+44185428 None:intergenic
TATGCTAAAAGTGTCGGATT+TGG 0.411257 1_2:-44185702 Msa0071870:CDS
GGGAAGAATTTGTTGTAGAG+TGG 0.416912 1_2:-44184264 Msa0071870:CDS
GGAAAATAATGTGCATATGT+TGG 0.418435 1_2:+44185462 None:intergenic
ATTGACATTTGCTTCTCAAA+AGG 0.424118 1_2:+44184412 None:intergenic
GAAAATAATGTGCATATGTT+GGG 0.428333 1_2:+44185463 None:intergenic
CCTCAAGTTTCGAAAACAAA+AGG 0.429689 1_2:-44183851 Msa0071870:CDS
AATGTTCAACAACCTTCTCT+TGG 0.431668 1_2:-44185771 Msa0071870:CDS
AACATATGATTCATTATTGA+CGG 0.433811 1_2:+44185812 None:intergenic
ATATGAAGAACGTAAACATT+GGG 0.435933 1_2:-44184650 Msa0071870:CDS
TCTTTGTAGACATTCATTGA+TGG 0.439326 1_2:-44184185 Msa0071870:CDS
TGTTAGAAATTATTTAGATA+AGG 0.447109 1_2:-44185301 Msa0071870:CDS
TCCGAAAGTCTCTCAATTGT+TGG 0.459525 1_2:-44184023 Msa0071870:CDS
AAGGAATGCACATTGTTTCA+AGG 0.460676 1_2:+44183943 None:intergenic
CTGGATGTCATCTCAGGAAA+AGG 0.462827 1_2:-44184336 Msa0071870:CDS
CACACTACATATTGAAAAGA+TGG 0.466243 1_2:-44184129 Msa0071870:CDS
TGAAGTTGCTTTGGAAGATA+GGG 0.473723 1_2:-44184500 Msa0071870:CDS
TCAACAACCTTCTCTTGGAA+TGG 0.475525 1_2:-44185766 Msa0071870:CDS
CAACTATCATACTTAGAGGA+TGG 0.478354 1_2:-44184688 Msa0071870:CDS
AATATGCTTGCACACGATAT+GGG 0.482142 1_2:-44185623 Msa0071870:CDS
GGAAGAATTTGTTGTAGAGT+GGG 0.484851 1_2:-44184263 Msa0071870:CDS
AAAGTCGAATATTGTAAAAG+AGG 0.485696 1_2:+44184294 None:intergenic
CTCAAGTTTCGAAAACAAAA+GGG 0.491800 1_2:-44183850 Msa0071870:CDS
GATTATCTGGATGTCATCTC+AGG 0.495985 1_2:-44184342 Msa0071870:CDS
AAGAAGATGTGATGGAAAAT+GGG 0.500802 1_2:-44185526 Msa0071870:CDS
TAACTTTGCATGTCATGCAC+TGG 0.501914 1_2:-44183972 Msa0071870:CDS
AACTATCATACTTAGAGGAT+GGG 0.509877 1_2:-44184687 Msa0071870:CDS
TTGAAGGTGGAATGTGAGGC+TGG 0.510501 1_2:-44185561 Msa0071870:CDS
TGCATGTCATGCACTGGAAG+AGG 0.518010 1_2:-44183966 Msa0071870:CDS
TGGAGATGCAAATGCAATGC+TGG 0.521188 1_2:-44185256 Msa0071870:CDS
GTCAATAATGAATCATATGT+TGG 0.522661 1_2:-44185810 Msa0071870:CDS
AAATCCACGTCCTTGTTTGA+AGG 0.523815 1_2:-44185577 Msa0071870:CDS
CATATTAAAAGAAGATGTGA+TGG 0.530592 1_2:-44185534 Msa0071870:CDS
GTCTGTCACTGATGAAGTTG+TGG 0.530843 1_2:-44183633 Msa0071870:CDS
TATATGAAGAACGTAAACAT+TGG 0.531034 1_2:-44184651 Msa0071870:CDS
GTCTCTCAATTGTTGGAGGA+AGG 0.536913 1_2:-44184016 Msa0071870:CDS
ATTTGCTTCTCAAAAGGTGA+TGG 0.540522 1_2:+44184418 None:intergenic
TTATTGATGGTTCTATGGCA+AGG 0.541208 1_2:+44185441 None:intergenic
TCAAATTCCATTCCAAGAGA+AGG 0.547857 1_2:+44185759 None:intergenic
TGTGGCTGCATCAACATCAA+TGG 0.551342 1_2:-44183615 Msa0071870:intron
CACAGAGGATATGAGAAAGT+TGG 0.554269 1_2:-44185339 Msa0071870:CDS
ATAAAGAGCGGCATTGAAAG+AGG 0.555157 1_2:-44183815 Msa0071870:CDS
GTTCAATATGCTAAAAGTGT+CGG 0.555277 1_2:-44185708 Msa0071870:CDS
TCCACGTCCTTGTTTGAAGG+TGG 0.557108 1_2:-44185574 Msa0071870:CDS
GAAAGTCTCTCAATTGTTGG+AGG 0.564988 1_2:-44184020 Msa0071870:CDS
CAAAGATACCACAATATTGG+AGG 0.570231 1_2:+44184161 None:intergenic
TTGATGGCCCTCCAATATTG+TGG 0.574773 1_2:-44184169 Msa0071870:CDS
ATTGAAACTTTGCAACATGT+TGG 0.575416 1_2:-44185402 Msa0071870:CDS
TTGTTTGAAGGTGGAATGTG+AGG 0.578909 1_2:-44185565 Msa0071870:CDS
TCCACCTTCAAACAAGGACG+TGG 0.585275 1_2:+44185573 None:intergenic
ATAATCCCGTAATTTCAACT+TGG 0.590214 1_2:+44184359 None:intergenic
GGTCGAAAGAGAACATCTGC+TGG 0.591877 1_2:-44183794 Msa0071870:CDS
TCACATTCCACCTTCAAACA+AGG 0.594495 1_2:+44185567 None:intergenic
TCTGTGTTGTTTGGCCATTG+TGG 0.602395 1_2:+44185356 None:intergenic
TGTGATCTTTGATGAAGCCA+TGG 0.603124 1_2:+44185499 None:intergenic
TATCATACTTAGAGGATGGG+TGG 0.607262 1_2:-44184684 Msa0071870:CDS
AGAGTGGGATGCATCGAAAG+AGG 0.609307 1_2:-44184248 Msa0071870:CDS
AAGCAAAATTTATGCCACAA+TGG 0.623748 1_2:-44185370 Msa0071870:CDS
AAAGATACCACAATATTGGA+GGG 0.630431 1_2:+44184162 None:intergenic
CATATTGAAAAGATGGACAA+AGG 0.638198 1_2:-44184122 Msa0071870:CDS
GATGGAAAATGGGTGGTCCA+TGG 0.647834 1_2:-44185516 Msa0071870:CDS
GGACAAAGGATATCAGAAGT+CGG 0.650140 1_2:-44184108 Msa0071870:CDS
TCAAGTTTCGAAAACAAAAG+GGG 0.665593 1_2:-44183849 Msa0071870:CDS
GGTGACTTTATCAACATCAG+TGG 0.672431 1_2:-44183484 Msa0071870:CDS
CAGATTCTAAATTCAAACGA+CGG 0.687984 1_2:+44185277 None:intergenic
GCACCGAAAAGAATAAAGAG+CGG 0.711864 1_2:-44183827 Msa0071870:CDS
AAGATGTGATGGAAAATGGG+TGG 0.757314 1_2:-44185523 Msa0071870:CDS
ACAATGGCCAAACAACACAG+AGG 0.783939 1_2:-44185354 Msa0071870:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGTTAGAAATTATTTAGATA+AGG - chr1_2:44184027-44184046 Msa0071870:CDS 15.0%
!! TGTTAGAAATTATTTAGATA+AGG - chr1_2:44184027-44184046 Msa0071870:CDS 15.0%
!! AACATATGATTCATTATTGA+CGG + chr1_2:44183519-44183538 None:intergenic 20.0%
!!! ATTCTCTAGAAATTTTTGAA+CGG + chr1_2:44183673-44183692 None:intergenic 20.0%
!!! ATTCTTTTATGCATTTGATT+TGG - chr1_2:44184129-44184148 Msa0071870:CDS 20.0%
!!! TCGTGTAAAAAATGTATTTT+GGG - chr1_2:44184162-44184181 Msa0071870:CDS 20.0%
!! AAGAAATAATGAAGATTTCA+TGG - chr1_2:44184537-44184556 Msa0071870:CDS 20.0%
!! AGAAATAATGAAGATTTCAT+GGG - chr1_2:44184538-44184557 Msa0071870:CDS 20.0%
!!! TACATGAAAGATACTTTTTT+CGG - chr1_2:44184709-44184728 Msa0071870:intron 20.0%
!!! TCTTTTTTTGACAAATATGT+AGG - chr1_2:44184769-44184788 Msa0071870:intron 20.0%
!!! ATTTTTTGGGCTATTTTTTA+AGG + chr1_2:44185418-44185437 None:intergenic 20.0%
!! TATAAAAGTTCATATCATGT+AGG - chr1_2:44185736-44185755 Msa0071870:CDS 20.0%
!! CTTTATATATTTCATTTCTC+AGG - chr1_2:44185762-44185781 Msa0071870:CDS 20.0%
!! AACATATGATTCATTATTGA+CGG + chr1_2:44183519-44183538 None:intergenic 20.0%
!!! ATTCTCTAGAAATTTTTGAA+CGG + chr1_2:44183673-44183692 None:intergenic 20.0%
!!! ATTCTTTTATGCATTTGATT+TGG - chr1_2:44184129-44184148 Msa0071870:CDS 20.0%
!!! TCGTGTAAAAAATGTATTTT+GGG - chr1_2:44184162-44184181 Msa0071870:CDS 20.0%
!! AAGAAATAATGAAGATTTCA+TGG - chr1_2:44184537-44184556 Msa0071870:CDS 20.0%
!! AGAAATAATGAAGATTTCAT+GGG - chr1_2:44184538-44184557 Msa0071870:CDS 20.0%
!!! TACATGAAAGATACTTTTTT+CGG - chr1_2:44184709-44184728 Msa0071870:intron 20.0%
!!! TCTTTTTTTGACAAATATGT+AGG - chr1_2:44184769-44184788 Msa0071870:intron 20.0%
!!! ATTTTTTGGGCTATTTTTTA+AGG + chr1_2:44185418-44185437 None:intergenic 20.0%
!! TATAAAAGTTCATATCATGT+AGG - chr1_2:44185736-44185755 Msa0071870:CDS 20.0%
!! CTTTATATATTTCATTTCTC+AGG - chr1_2:44185762-44185781 Msa0071870:CDS 20.0%
!! TGTTCTTCATTTTCATCAAT+GGG + chr1_2:44183482-44183501 None:intergenic 25.0%
!! ATGTTCTTCATTTTCATCAA+TGG + chr1_2:44183483-44183502 None:intergenic 25.0%
! GTCAATAATGAATCATATGT+TGG - chr1_2:44183518-44183537 Msa0071870:intron 25.0%
! CATATTAAAAGAAGATGTGA+TGG - chr1_2:44183794-44183813 Msa0071870:CDS 25.0%
! GAAAATAATGTGCATATGTT+GGG + chr1_2:44183868-44183887 None:intergenic 25.0%
!! GTCGTGTAAAAAATGTATTT+TGG - chr1_2:44184161-44184180 Msa0071870:CDS 25.0%
!!! TGTAAAAAATGTATTTTGGG+TGG - chr1_2:44184165-44184184 Msa0071870:CDS 25.0%
! TGTGATATATGTAGTATCAA+AGG + chr1_2:44184236-44184255 None:intergenic 25.0%
!! TACAACAGTTTGAAGTTAAA+TGG - chr1_2:44184596-44184615 Msa0071870:CDS 25.0%
!! ACAACAGTTTGAAGTTAAAT+GGG - chr1_2:44184597-44184616 Msa0071870:CDS 25.0%
! ATTTCAACTATCATACTTAG+AGG - chr1_2:44184636-44184655 Msa0071870:CDS 25.0%
! TATATGAAGAACGTAAACAT+TGG - chr1_2:44184677-44184696 Msa0071870:CDS 25.0%
! ATATGAAGAACGTAAACATT+GGG - chr1_2:44184678-44184697 Msa0071870:CDS 25.0%
!! AAAGTATCTTTCATGTAAAC+AGG + chr1_2:44184706-44184725 None:intergenic 25.0%
! TGAAAAATATGAAGTTGCTT+TGG - chr1_2:44184819-44184838 Msa0071870:intron 25.0%
!! AAAGTTCCAAGTTGAAATTA+CGG - chr1_2:44184963-44184982 Msa0071870:intron 25.0%
! AAAGTCGAATATTGTAAAAG+AGG + chr1_2:44185037-44185056 None:intergenic 25.0%
!! TCTTTTACAATATTCGACTT+TGG - chr1_2:44185036-44185055 Msa0071870:intron 25.0%
!! AATATTCGACTTTGGTAATA+GGG - chr1_2:44185044-44185063 Msa0071870:intron 25.0%
!! TTTTCAATATGTAGTGTGAT+GGG + chr1_2:44185197-44185216 None:intergenic 25.0%
!!! TATTTTTTAAGGATCGGTTA+AGG + chr1_2:44185407-44185426 None:intergenic 25.0%
! ATGTGATTATGTGAAAATGA+AGG - chr1_2:44185647-44185666 Msa0071870:CDS 25.0%
!! TGTTCTTCATTTTCATCAAT+GGG + chr1_2:44183482-44183501 None:intergenic 25.0%
!! ATGTTCTTCATTTTCATCAA+TGG + chr1_2:44183483-44183502 None:intergenic 25.0%
! GTCAATAATGAATCATATGT+TGG - chr1_2:44183518-44183537 Msa0071870:intron 25.0%
! CATATTAAAAGAAGATGTGA+TGG - chr1_2:44183794-44183813 Msa0071870:CDS 25.0%
! GAAAATAATGTGCATATGTT+GGG + chr1_2:44183868-44183887 None:intergenic 25.0%
!! GTCGTGTAAAAAATGTATTT+TGG - chr1_2:44184161-44184180 Msa0071870:CDS 25.0%
!!! TGTAAAAAATGTATTTTGGG+TGG - chr1_2:44184165-44184184 Msa0071870:CDS 25.0%
! TGTGATATATGTAGTATCAA+AGG + chr1_2:44184236-44184255 None:intergenic 25.0%
!! TACAACAGTTTGAAGTTAAA+TGG - chr1_2:44184596-44184615 Msa0071870:CDS 25.0%
!! ACAACAGTTTGAAGTTAAAT+GGG - chr1_2:44184597-44184616 Msa0071870:CDS 25.0%
! ATTTCAACTATCATACTTAG+AGG - chr1_2:44184636-44184655 Msa0071870:CDS 25.0%
! TATATGAAGAACGTAAACAT+TGG - chr1_2:44184677-44184696 Msa0071870:CDS 25.0%
! ATATGAAGAACGTAAACATT+GGG - chr1_2:44184678-44184697 Msa0071870:CDS 25.0%
!! AAAGTATCTTTCATGTAAAC+AGG + chr1_2:44184706-44184725 None:intergenic 25.0%
! TGAAAAATATGAAGTTGCTT+TGG - chr1_2:44184819-44184838 Msa0071870:intron 25.0%
!! AAAGTTCCAAGTTGAAATTA+CGG - chr1_2:44184963-44184982 Msa0071870:intron 25.0%
! AAAGTCGAATATTGTAAAAG+AGG + chr1_2:44185037-44185056 None:intergenic 25.0%
!! TCTTTTACAATATTCGACTT+TGG - chr1_2:44185036-44185055 Msa0071870:intron 25.0%
!! AATATTCGACTTTGGTAATA+GGG - chr1_2:44185044-44185063 Msa0071870:intron 25.0%
!! TTTTCAATATGTAGTGTGAT+GGG + chr1_2:44185197-44185216 None:intergenic 25.0%
!!! TATTTTTTAAGGATCGGTTA+AGG + chr1_2:44185407-44185426 None:intergenic 25.0%
! ATGTGATTATGTGAAAATGA+AGG - chr1_2:44185647-44185666 Msa0071870:CDS 25.0%
!! ATCATATGTTGGTGATTTAG+AGG - chr1_2:44183529-44183548 Msa0071870:intron 30.0%
! GTTCAATATGCTAAAAGTGT+CGG - chr1_2:44183620-44183639 Msa0071870:CDS 30.0%
! AAAGAAGATGTGATGGAAAA+TGG - chr1_2:44183801-44183820 Msa0071870:CDS 30.0%
! AAGAAGATGTGATGGAAAAT+GGG - chr1_2:44183802-44183821 Msa0071870:CDS 30.0%
GGAAAATAATGTGCATATGT+TGG + chr1_2:44183869-44183888 None:intergenic 30.0%
ATTGAAACTTTGCAACATGT+TGG - chr1_2:44183926-44183945 Msa0071870:CDS 30.0%
AAGCAAAATTTATGCCACAA+TGG - chr1_2:44183958-44183977 Msa0071870:CDS 30.0%
CAGATTCTAAATTCAAACGA+CGG + chr1_2:44184054-44184073 None:intergenic 30.0%
!! AAAAATGTATTTTGGGTGGA+TGG - chr1_2:44184169-44184188 Msa0071870:CDS 30.0%
AGAGATGATTATCAAGTGTT+TGG - chr1_2:44184199-44184218 Msa0071870:CDS 30.0%
TGATTATTCACACCAATGAA+TGG + chr1_2:44184283-44184302 None:intergenic 30.0%
!! TCAAATGGTTGATGAAAACA+TGG - chr1_2:44184359-44184378 Msa0071870:CDS 30.0%
TCTTTGGCATATACTTAGAA+AGG - chr1_2:44184489-44184508 Msa0071870:CDS 30.0%
AACTATCATACTTAGAGGAT+GGG - chr1_2:44184641-44184660 Msa0071870:CDS 30.0%
!!! ATGAAAGATACTTTTTTCGG+TGG - chr1_2:44184712-44184731 Msa0071870:intron 30.0%
!!! TGCATGCTGATTTTAATACA+TGG - chr1_2:44184863-44184882 Msa0071870:intron 30.0%
ATTGACATTTGCTTCTCAAA+AGG + chr1_2:44184919-44184938 None:intergenic 30.0%
! AAGTTCCAAGTTGAAATTAC+GGG - chr1_2:44184964-44184983 Msa0071870:intron 30.0%
ATAATCCCGTAATTTCAACT+TGG + chr1_2:44184972-44184991 None:intergenic 30.0%
! CAATATTCGACTTTGGTAAT+AGG - chr1_2:44185043-44185062 Msa0071870:intron 30.0%
! TGTCGTTTGTTTGAGTATAA+TGG - chr1_2:44185117-44185136 Msa0071870:intron 30.0%
GTCGTTTGTTTGAGTATAAT+GGG - chr1_2:44185118-44185137 Msa0071870:intron 30.0%
TCTTTGTAGACATTCATTGA+TGG - chr1_2:44185143-44185162 Msa0071870:intron 30.0%
AAAGATACCACAATATTGGA+GGG + chr1_2:44185169-44185188 None:intergenic 30.0%
CAACAAAGATACCACAATAT+TGG + chr1_2:44185173-44185192 None:intergenic 30.0%
! CTTTTCAATATGTAGTGTGA+TGG + chr1_2:44185198-44185217 None:intergenic 30.0%
CACACTACATATTGAAAAGA+TGG - chr1_2:44185199-44185218 Msa0071870:intron 30.0%
CATATTGAAAAGATGGACAA+AGG - chr1_2:44185206-44185225 Msa0071870:intron 30.0%
TGAAGATATTTGTTCGAAGA+AGG - chr1_2:44185263-44185282 Msa0071870:CDS 30.0%
!!! TTGGGCTATTTTTTAAGGAT+CGG + chr1_2:44185413-44185432 None:intergenic 30.0%
!!! TGCTCTTTCTGCTATTTTTT+GGG + chr1_2:44185431-44185450 None:intergenic 30.0%
CTCAAGTTTCGAAAACAAAA+GGG - chr1_2:44185478-44185497 Msa0071870:CDS 30.0%
TCAAGTTTCGAAAACAAAAG+GGG - chr1_2:44185479-44185498 Msa0071870:CDS 30.0%
CAGTACTCAAATGTGAAAAT+GGG + chr1_2:44185798-44185817 None:intergenic 30.0%
TCAGTACTCAAATGTGAAAA+TGG + chr1_2:44185799-44185818 None:intergenic 30.0%
GCAATGTAATGTGATTATGT+AGG - chr1_2:44185823-44185842 Msa0071870:CDS 30.0%
!! ATCATATGTTGGTGATTTAG+AGG - chr1_2:44183529-44183548 Msa0071870:intron 30.0%
! GTTCAATATGCTAAAAGTGT+CGG - chr1_2:44183620-44183639 Msa0071870:CDS 30.0%
! AAAGAAGATGTGATGGAAAA+TGG - chr1_2:44183801-44183820 Msa0071870:CDS 30.0%
! AAGAAGATGTGATGGAAAAT+GGG - chr1_2:44183802-44183821 Msa0071870:CDS 30.0%
GGAAAATAATGTGCATATGT+TGG + chr1_2:44183869-44183888 None:intergenic 30.0%
ATTGAAACTTTGCAACATGT+TGG - chr1_2:44183926-44183945 Msa0071870:CDS 30.0%
AAGCAAAATTTATGCCACAA+TGG - chr1_2:44183958-44183977 Msa0071870:CDS 30.0%
CAGATTCTAAATTCAAACGA+CGG + chr1_2:44184054-44184073 None:intergenic 30.0%
!! AAAAATGTATTTTGGGTGGA+TGG - chr1_2:44184169-44184188 Msa0071870:CDS 30.0%
AGAGATGATTATCAAGTGTT+TGG - chr1_2:44184199-44184218 Msa0071870:CDS 30.0%
TGATTATTCACACCAATGAA+TGG + chr1_2:44184283-44184302 None:intergenic 30.0%
!! TCAAATGGTTGATGAAAACA+TGG - chr1_2:44184359-44184378 Msa0071870:CDS 30.0%
TCTTTGGCATATACTTAGAA+AGG - chr1_2:44184489-44184508 Msa0071870:CDS 30.0%
AACTATCATACTTAGAGGAT+GGG - chr1_2:44184641-44184660 Msa0071870:CDS 30.0%
!!! ATGAAAGATACTTTTTTCGG+TGG - chr1_2:44184712-44184731 Msa0071870:intron 30.0%
!!! TGCATGCTGATTTTAATACA+TGG - chr1_2:44184863-44184882 Msa0071870:intron 30.0%
ATTGACATTTGCTTCTCAAA+AGG + chr1_2:44184919-44184938 None:intergenic 30.0%
! AAGTTCCAAGTTGAAATTAC+GGG - chr1_2:44184964-44184983 Msa0071870:intron 30.0%
ATAATCCCGTAATTTCAACT+TGG + chr1_2:44184972-44184991 None:intergenic 30.0%
! CAATATTCGACTTTGGTAAT+AGG - chr1_2:44185043-44185062 Msa0071870:intron 30.0%
! TGTCGTTTGTTTGAGTATAA+TGG - chr1_2:44185117-44185136 Msa0071870:intron 30.0%
GTCGTTTGTTTGAGTATAAT+GGG - chr1_2:44185118-44185137 Msa0071870:intron 30.0%
TCTTTGTAGACATTCATTGA+TGG - chr1_2:44185143-44185162 Msa0071870:intron 30.0%
AAAGATACCACAATATTGGA+GGG + chr1_2:44185169-44185188 None:intergenic 30.0%
CAACAAAGATACCACAATAT+TGG + chr1_2:44185173-44185192 None:intergenic 30.0%
! CTTTTCAATATGTAGTGTGA+TGG + chr1_2:44185198-44185217 None:intergenic 30.0%
CACACTACATATTGAAAAGA+TGG - chr1_2:44185199-44185218 Msa0071870:intron 30.0%
CATATTGAAAAGATGGACAA+AGG - chr1_2:44185206-44185225 Msa0071870:intron 30.0%
TGAAGATATTTGTTCGAAGA+AGG - chr1_2:44185263-44185282 Msa0071870:CDS 30.0%
!!! TTGGGCTATTTTTTAAGGAT+CGG + chr1_2:44185413-44185432 None:intergenic 30.0%
!!! TGCTCTTTCTGCTATTTTTT+GGG + chr1_2:44185431-44185450 None:intergenic 30.0%
CTCAAGTTTCGAAAACAAAA+GGG - chr1_2:44185478-44185497 Msa0071870:CDS 30.0%
TCAAGTTTCGAAAACAAAAG+GGG - chr1_2:44185479-44185498 Msa0071870:CDS 30.0%
CAGTACTCAAATGTGAAAAT+GGG + chr1_2:44185798-44185817 None:intergenic 30.0%
TCAGTACTCAAATGTGAAAA+TGG + chr1_2:44185799-44185818 None:intergenic 30.0%
GCAATGTAATGTGATTATGT+AGG - chr1_2:44185823-44185842 Msa0071870:CDS 30.0%
AATGTTCAACAACCTTCTCT+TGG - chr1_2:44183557-44183576 Msa0071870:intron 35.0%
TCAAATTCCATTCCAAGAGA+AGG + chr1_2:44183572-44183591 None:intergenic 35.0%
!! TATGCTAAAAGTGTCGGATT+TGG - chr1_2:44183626-44183645 Msa0071870:CDS 35.0%
AAATATGCTTGCACACGATA+TGG - chr1_2:44183704-44183723 Msa0071870:intron 35.0%
AATATGCTTGCACACGATAT+GGG - chr1_2:44183705-44183724 Msa0071870:intron 35.0%
! TTATTGATGGTTCTATGGCA+AGG + chr1_2:44183890-44183909 None:intergenic 35.0%
!! GAGCTTTATTGATGGTTCTA+TGG + chr1_2:44183895-44183914 None:intergenic 35.0%
!! ATTCTGCTGAGCTTTATTGA+TGG + chr1_2:44183903-44183922 None:intergenic 35.0%
! ATATGAGAAAGTTGGTTGCT+TGG - chr1_2:44183997-44184016 Msa0071870:CDS 35.0%
! CGTCGTTTGAATTTAGAATC+TGG - chr1_2:44184052-44184071 Msa0071870:CDS 35.0%
!! GCATTTGATTTGGATGATGA+TGG - chr1_2:44184139-44184158 Msa0071870:CDS 35.0%
! GTTGATGAAAACATGGCTTA+AGG - chr1_2:44184366-44184385 Msa0071870:CDS 35.0%
AAAACATGGCTTAAGGCAAT+GGG - chr1_2:44184373-44184392 Msa0071870:CDS 35.0%
TCAGTTATCATTGCATTTGG+AGG + chr1_2:44184406-44184425 None:intergenic 35.0%
TGGTCAGTTATCATTGCATT+TGG + chr1_2:44184409-44184428 None:intergenic 35.0%
AATGAAAGTGGCTATTGAAG+AGG - chr1_2:44184438-44184457 Msa0071870:CDS 35.0%
TGAAGTTAAATGGGCAGAAA+TGG - chr1_2:44184606-44184625 Msa0071870:CDS 35.0%
CAACTATCATACTTAGAGGA+TGG - chr1_2:44184640-44184659 Msa0071870:CDS 35.0%
!! ATGAAGTTGCTTTGGAAGAT+AGG - chr1_2:44184827-44184846 Msa0071870:intron 35.0%
!! TGAAGTTGCTTTGGAAGATA+GGG - chr1_2:44184828-44184847 Msa0071870:intron 35.0%
!!! CAAAAGGTGATGGAGTTTTA+AGG + chr1_2:44184903-44184922 None:intergenic 35.0%
ATTTGCTTCTCAAAAGGTGA+TGG + chr1_2:44184913-44184932 None:intergenic 35.0%
GTTGAAATTACGGGATTATC+TGG - chr1_2:44184973-44184992 Msa0071870:intron 35.0%
!! GGAAGAATTTGTTGTAGAGT+GGG - chr1_2:44185065-44185084 Msa0071870:intron 35.0%
CAAAGATACCACAATATTGG+AGG + chr1_2:44185170-44185189 None:intergenic 35.0%
TCCAACAATTGAGAGACTTT+CGG + chr1_2:44185309-44185328 None:intergenic 35.0%
AAGGAATGCACATTGTTTCA+AGG + chr1_2:44185388-44185407 None:intergenic 35.0%
!!! GTGCTCTTTCTGCTATTTTT+TGG + chr1_2:44185432-44185451 None:intergenic 35.0%
!!! CCTTTTGTTTTCGAAACTTG+AGG + chr1_2:44185480-44185499 None:intergenic 35.0%
CCTCAAGTTTCGAAAACAAA+AGG - chr1_2:44185477-44185496 Msa0071870:CDS 35.0%
! ATGCCGCTCTTTATTCTTTT+CGG + chr1_2:44185507-44185526 None:intergenic 35.0%
AATGTTCAACAACCTTCTCT+TGG - chr1_2:44183557-44183576 Msa0071870:intron 35.0%
TCAAATTCCATTCCAAGAGA+AGG + chr1_2:44183572-44183591 None:intergenic 35.0%
!! TATGCTAAAAGTGTCGGATT+TGG - chr1_2:44183626-44183645 Msa0071870:CDS 35.0%
AAATATGCTTGCACACGATA+TGG - chr1_2:44183704-44183723 Msa0071870:intron 35.0%
AATATGCTTGCACACGATAT+GGG - chr1_2:44183705-44183724 Msa0071870:intron 35.0%
! TTATTGATGGTTCTATGGCA+AGG + chr1_2:44183890-44183909 None:intergenic 35.0%
!! GAGCTTTATTGATGGTTCTA+TGG + chr1_2:44183895-44183914 None:intergenic 35.0%
!! ATTCTGCTGAGCTTTATTGA+TGG + chr1_2:44183903-44183922 None:intergenic 35.0%
! ATATGAGAAAGTTGGTTGCT+TGG - chr1_2:44183997-44184016 Msa0071870:CDS 35.0%
! CGTCGTTTGAATTTAGAATC+TGG - chr1_2:44184052-44184071 Msa0071870:CDS 35.0%
!! GCATTTGATTTGGATGATGA+TGG - chr1_2:44184139-44184158 Msa0071870:CDS 35.0%
! GTTGATGAAAACATGGCTTA+AGG - chr1_2:44184366-44184385 Msa0071870:CDS 35.0%
AAAACATGGCTTAAGGCAAT+GGG - chr1_2:44184373-44184392 Msa0071870:CDS 35.0%
TCAGTTATCATTGCATTTGG+AGG + chr1_2:44184406-44184425 None:intergenic 35.0%
TGGTCAGTTATCATTGCATT+TGG + chr1_2:44184409-44184428 None:intergenic 35.0%
AATGAAAGTGGCTATTGAAG+AGG - chr1_2:44184438-44184457 Msa0071870:CDS 35.0%
TGAAGTTAAATGGGCAGAAA+TGG - chr1_2:44184606-44184625 Msa0071870:CDS 35.0%
CAACTATCATACTTAGAGGA+TGG - chr1_2:44184640-44184659 Msa0071870:CDS 35.0%
!! ATGAAGTTGCTTTGGAAGAT+AGG - chr1_2:44184827-44184846 Msa0071870:intron 35.0%
!! TGAAGTTGCTTTGGAAGATA+GGG - chr1_2:44184828-44184847 Msa0071870:intron 35.0%
!!! CAAAAGGTGATGGAGTTTTA+AGG + chr1_2:44184903-44184922 None:intergenic 35.0%
ATTTGCTTCTCAAAAGGTGA+TGG + chr1_2:44184913-44184932 None:intergenic 35.0%
GTTGAAATTACGGGATTATC+TGG - chr1_2:44184973-44184992 Msa0071870:intron 35.0%
!! GGAAGAATTTGTTGTAGAGT+GGG - chr1_2:44185065-44185084 Msa0071870:intron 35.0%
CAAAGATACCACAATATTGG+AGG + chr1_2:44185170-44185189 None:intergenic 35.0%
TCCAACAATTGAGAGACTTT+CGG + chr1_2:44185309-44185328 None:intergenic 35.0%
AAGGAATGCACATTGTTTCA+AGG + chr1_2:44185388-44185407 None:intergenic 35.0%
!!! GTGCTCTTTCTGCTATTTTT+TGG + chr1_2:44185432-44185451 None:intergenic 35.0%
!!! CCTTTTGTTTTCGAAACTTG+AGG + chr1_2:44185480-44185499 None:intergenic 35.0%
CCTCAAGTTTCGAAAACAAA+AGG - chr1_2:44185477-44185496 Msa0071870:CDS 35.0%
! ATGCCGCTCTTTATTCTTTT+CGG + chr1_2:44185507-44185526 None:intergenic 35.0%
TCAACAACCTTCTCTTGGAA+TGG - chr1_2:44183562-44183581 Msa0071870:intron 40.0%
!! TGAACGGCGACTACTTTTAA+TGG + chr1_2:44183657-44183676 None:intergenic 40.0%
! AAATCCACGTCCTTGTTTGA+AGG - chr1_2:44183751-44183770 Msa0071870:intron 40.0%
TCACATTCCACCTTCAAACA+AGG + chr1_2:44183764-44183783 None:intergenic 40.0%
TTGTTTGAAGGTGGAATGTG+AGG - chr1_2:44183763-44183782 Msa0071870:intron 40.0%
! AAGATGTGATGGAAAATGGG+TGG - chr1_2:44183805-44183824 Msa0071870:CDS 40.0%
TGTGATCTTTGATGAAGCCA+TGG + chr1_2:44183832-44183851 None:intergenic 40.0%
! CTCATATCCTCTGTGTTGTT+TGG + chr1_2:44183984-44184003 None:intergenic 40.0%
CACAGAGGATATGAGAAAGT+TGG - chr1_2:44183989-44184008 Msa0071870:CDS 40.0%
!! TGTATTTTGGGTGGATGGAA+AGG - chr1_2:44184174-44184193 Msa0071870:CDS 40.0%
!! GTATTTTGGGTGGATGGAAA+GGG - chr1_2:44184175-44184194 Msa0071870:CDS 40.0%
! ATGCCATTTGCTCCATTCAT+TGG - chr1_2:44184268-44184287 Msa0071870:CDS 40.0%
ACACCAATGAATGGAGCAAA+TGG + chr1_2:44184274-44184293 None:intergenic 40.0%
CACTTCCAGTCAAGATTACT+CGG - chr1_2:44184301-44184320 Msa0071870:CDS 40.0%
!! AGACCTCTGAGACTTTCAAA+TGG - chr1_2:44184344-44184363 Msa0071870:CDS 40.0%
CAACCATTTGAAAGTCTCAG+AGG + chr1_2:44184350-44184369 None:intergenic 40.0%
GAAAACATGGCTTAAGGCAA+TGG - chr1_2:44184372-44184391 Msa0071870:CDS 40.0%
CCACTTTCATTGATCTGTCT+TGG + chr1_2:44184429-44184448 None:intergenic 40.0%
CCAAGACAGATCAATGAAAG+TGG - chr1_2:44184426-44184445 Msa0071870:CDS 40.0%
CAAAAACGATGTCGGGTATT+TGG + chr1_2:44184469-44184488 None:intergenic 40.0%
CCAAAGACAAAAACGATGTC+GGG + chr1_2:44184476-44184495 None:intergenic 40.0%
GCCAAAGACAAAAACGATGT+CGG + chr1_2:44184477-44184496 None:intergenic 40.0%
ATTACATGACCAAGCTTCTC+AGG + chr1_2:44184517-44184536 None:intergenic 40.0%
TATCATACTTAGAGGATGGG+TGG - chr1_2:44184644-44184663 Msa0071870:CDS 40.0%
GATTATCTGGATGTCATCTC+AGG - chr1_2:44184986-44185005 Msa0071870:intron 40.0%
!! GGGAAGAATTTGTTGTAGAG+TGG - chr1_2:44185064-44185083 Msa0071870:intron 40.0%
GGACAAAGGATATCAGAAGT+CGG - chr1_2:44185220-44185239 Msa0071870:intron 40.0%
TCCGAAAGTCTCTCAATTGT+TGG - chr1_2:44185305-44185324 Msa0071870:CDS 40.0%
GAAAGTCTCTCAATTGTTGG+AGG - chr1_2:44185308-44185327 Msa0071870:CDS 40.0%
TAACTTTGCATGTCATGCAC+TGG - chr1_2:44185356-44185375 Msa0071870:CDS 40.0%
GCACCGAAAAGAATAAAGAG+CGG - chr1_2:44185501-44185520 Msa0071870:CDS 40.0%
! ATAAAGAGCGGCATTGAAAG+AGG - chr1_2:44185513-44185532 Msa0071870:CDS 40.0%
AAGGCTGCAATCGTTGAAAA+AGG - chr1_2:44185666-44185685 Msa0071870:CDS 40.0%
GGTGACTTTATCAACATCAG+TGG - chr1_2:44185844-44185863 Msa0071870:CDS 40.0%
TCAACAACCTTCTCTTGGAA+TGG - chr1_2:44183562-44183581 Msa0071870:intron 40.0%
!! TGAACGGCGACTACTTTTAA+TGG + chr1_2:44183657-44183676 None:intergenic 40.0%
! AAATCCACGTCCTTGTTTGA+AGG - chr1_2:44183751-44183770 Msa0071870:intron 40.0%
TCACATTCCACCTTCAAACA+AGG + chr1_2:44183764-44183783 None:intergenic 40.0%
TTGTTTGAAGGTGGAATGTG+AGG - chr1_2:44183763-44183782 Msa0071870:intron 40.0%
! AAGATGTGATGGAAAATGGG+TGG - chr1_2:44183805-44183824 Msa0071870:CDS 40.0%
TGTGATCTTTGATGAAGCCA+TGG + chr1_2:44183832-44183851 None:intergenic 40.0%
! CTCATATCCTCTGTGTTGTT+TGG + chr1_2:44183984-44184003 None:intergenic 40.0%
CACAGAGGATATGAGAAAGT+TGG - chr1_2:44183989-44184008 Msa0071870:CDS 40.0%
!! TGTATTTTGGGTGGATGGAA+AGG - chr1_2:44184174-44184193 Msa0071870:CDS 40.0%
!! GTATTTTGGGTGGATGGAAA+GGG - chr1_2:44184175-44184194 Msa0071870:CDS 40.0%
! ATGCCATTTGCTCCATTCAT+TGG - chr1_2:44184268-44184287 Msa0071870:CDS 40.0%
ACACCAATGAATGGAGCAAA+TGG + chr1_2:44184274-44184293 None:intergenic 40.0%
CACTTCCAGTCAAGATTACT+CGG - chr1_2:44184301-44184320 Msa0071870:CDS 40.0%
!! AGACCTCTGAGACTTTCAAA+TGG - chr1_2:44184344-44184363 Msa0071870:CDS 40.0%
CAACCATTTGAAAGTCTCAG+AGG + chr1_2:44184350-44184369 None:intergenic 40.0%
GAAAACATGGCTTAAGGCAA+TGG - chr1_2:44184372-44184391 Msa0071870:CDS 40.0%
CCACTTTCATTGATCTGTCT+TGG + chr1_2:44184429-44184448 None:intergenic 40.0%
CCAAGACAGATCAATGAAAG+TGG - chr1_2:44184426-44184445 Msa0071870:CDS 40.0%
CAAAAACGATGTCGGGTATT+TGG + chr1_2:44184469-44184488 None:intergenic 40.0%
CCAAAGACAAAAACGATGTC+GGG + chr1_2:44184476-44184495 None:intergenic 40.0%
GCCAAAGACAAAAACGATGT+CGG + chr1_2:44184477-44184496 None:intergenic 40.0%
ATTACATGACCAAGCTTCTC+AGG + chr1_2:44184517-44184536 None:intergenic 40.0%
TATCATACTTAGAGGATGGG+TGG - chr1_2:44184644-44184663 Msa0071870:CDS 40.0%
GATTATCTGGATGTCATCTC+AGG - chr1_2:44184986-44185005 Msa0071870:intron 40.0%
!! GGGAAGAATTTGTTGTAGAG+TGG - chr1_2:44185064-44185083 Msa0071870:intron 40.0%
GGACAAAGGATATCAGAAGT+CGG - chr1_2:44185220-44185239 Msa0071870:intron 40.0%
TCCGAAAGTCTCTCAATTGT+TGG - chr1_2:44185305-44185324 Msa0071870:CDS 40.0%
GAAAGTCTCTCAATTGTTGG+AGG - chr1_2:44185308-44185327 Msa0071870:CDS 40.0%
TAACTTTGCATGTCATGCAC+TGG - chr1_2:44185356-44185375 Msa0071870:CDS 40.0%
GCACCGAAAAGAATAAAGAG+CGG - chr1_2:44185501-44185520 Msa0071870:CDS 40.0%
! ATAAAGAGCGGCATTGAAAG+AGG - chr1_2:44185513-44185532 Msa0071870:CDS 40.0%
AAGGCTGCAATCGTTGAAAA+AGG - chr1_2:44185666-44185685 Msa0071870:CDS 40.0%
GGTGACTTTATCAACATCAG+TGG - chr1_2:44185844-44185863 Msa0071870:CDS 40.0%
! ACAAGGACGTGGATTTTGTG+CGG + chr1_2:44183747-44183766 None:intergenic 45.0%
!! TCTGTGTTGTTTGGCCATTG+TGG + chr1_2:44183975-44183994 None:intergenic 45.0%
ACAATGGCCAAACAACACAG+AGG - chr1_2:44183974-44183993 Msa0071870:CDS 45.0%
TGGAGATGCAAATGCAATGC+TGG - chr1_2:44184072-44184091 Msa0071870:CDS 45.0%
CACAACCGAGTAATCTTGAC+TGG + chr1_2:44184309-44184328 None:intergenic 45.0%
!! CCCGACATCGTTTTTGTCTT+TGG - chr1_2:44184473-44184492 Msa0071870:CDS 45.0%
!!! GGTGATGGAGTTTTAAGGAC+TGG + chr1_2:44184898-44184917 None:intergenic 45.0%
CTGGATGTCATCTCAGGAAA+AGG - chr1_2:44184992-44185011 Msa0071870:intron 45.0%
! TTGATGGCCCTCCAATATTG+TGG - chr1_2:44185159-44185178 Msa0071870:intron 45.0%
GTCTCTCAATTGTTGGAGGA+AGG - chr1_2:44185312-44185331 Msa0071870:CDS 45.0%
! ATCTGCTGGTAGCGTGAAAA+AGG - chr1_2:44185548-44185567 Msa0071870:CDS 45.0%
GTCTGTCACTGATGAAGTTG+TGG - chr1_2:44185695-44185714 Msa0071870:CDS 45.0%
TGTGGCTGCATCAACATCAA+TGG - chr1_2:44185713-44185732 Msa0071870:CDS 45.0%
! ACAAGGACGTGGATTTTGTG+CGG + chr1_2:44183747-44183766 None:intergenic 45.0%
!! TCTGTGTTGTTTGGCCATTG+TGG + chr1_2:44183975-44183994 None:intergenic 45.0%
ACAATGGCCAAACAACACAG+AGG - chr1_2:44183974-44183993 Msa0071870:CDS 45.0%
TGGAGATGCAAATGCAATGC+TGG - chr1_2:44184072-44184091 Msa0071870:CDS 45.0%
CACAACCGAGTAATCTTGAC+TGG + chr1_2:44184309-44184328 None:intergenic 45.0%
!! CCCGACATCGTTTTTGTCTT+TGG - chr1_2:44184473-44184492 Msa0071870:CDS 45.0%
!!! GGTGATGGAGTTTTAAGGAC+TGG + chr1_2:44184898-44184917 None:intergenic 45.0%
CTGGATGTCATCTCAGGAAA+AGG - chr1_2:44184992-44185011 Msa0071870:intron 45.0%
! TTGATGGCCCTCCAATATTG+TGG - chr1_2:44185159-44185178 Msa0071870:intron 45.0%
GTCTCTCAATTGTTGGAGGA+AGG - chr1_2:44185312-44185331 Msa0071870:CDS 45.0%
! ATCTGCTGGTAGCGTGAAAA+AGG - chr1_2:44185548-44185567 Msa0071870:CDS 45.0%
GTCTGTCACTGATGAAGTTG+TGG - chr1_2:44185695-44185714 Msa0071870:CDS 45.0%
TGTGGCTGCATCAACATCAA+TGG - chr1_2:44185713-44185732 Msa0071870:CDS 45.0%
! TCCACGTCCTTGTTTGAAGG+TGG - chr1_2:44183754-44183773 Msa0071870:intron 50.0%
TCCACCTTCAAACAAGGACG+TGG + chr1_2:44183758-44183777 None:intergenic 50.0%
TTGAAGGTGGAATGTGAGGC+TGG - chr1_2:44183767-44183786 Msa0071870:intron 50.0%
GATGGAAAATGGGTGGTCCA+TGG - chr1_2:44183812-44183831 Msa0071870:CDS 50.0%
ACATGGCTTAAGGCAATGGG+TGG - chr1_2:44184376-44184395 Msa0071870:CDS 50.0%
CATGGCTTAAGGCAATGGGT+GGG - chr1_2:44184377-44184396 Msa0071870:CDS 50.0%
!! AGAAAGGTGCCTGAGAAGCT+TGG - chr1_2:44184505-44184524 Msa0071870:CDS 50.0%
AGAGTGGGATGCATCGAAAG+AGG - chr1_2:44185080-44185099 Msa0071870:intron 50.0%
TGCATGTCATGCACTGGAAG+AGG - chr1_2:44185362-44185381 Msa0071870:CDS 50.0%
GGTCGAAAGAGAACATCTGC+TGG - chr1_2:44185534-44185553 Msa0071870:CDS 50.0%
! GCTGGTAGCGTGAAAAAGGT+TGG - chr1_2:44185552-44185571 Msa0071870:CDS 50.0%
! TCCACGTCCTTGTTTGAAGG+TGG - chr1_2:44183754-44183773 Msa0071870:intron 50.0%
TCCACCTTCAAACAAGGACG+TGG + chr1_2:44183758-44183777 None:intergenic 50.0%
TTGAAGGTGGAATGTGAGGC+TGG - chr1_2:44183767-44183786 Msa0071870:intron 50.0%
GATGGAAAATGGGTGGTCCA+TGG - chr1_2:44183812-44183831 Msa0071870:CDS 50.0%
ACATGGCTTAAGGCAATGGG+TGG - chr1_2:44184376-44184395 Msa0071870:CDS 50.0%
CATGGCTTAAGGCAATGGGT+GGG - chr1_2:44184377-44184396 Msa0071870:CDS 50.0%
!! AGAAAGGTGCCTGAGAAGCT+TGG - chr1_2:44184505-44184524 Msa0071870:CDS 50.0%
AGAGTGGGATGCATCGAAAG+AGG - chr1_2:44185080-44185099 Msa0071870:intron 50.0%
TGCATGTCATGCACTGGAAG+AGG - chr1_2:44185362-44185381 Msa0071870:CDS 50.0%
GGTCGAAAGAGAACATCTGC+TGG - chr1_2:44185534-44185553 Msa0071870:CDS 50.0%
! GCTGGTAGCGTGAAAAAGGT+TGG - chr1_2:44185552-44185571 Msa0071870:CDS 50.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 44183473 44185877 44183473 ID=Msa0071870;Name=Msa0071870
chr1_2 mRNA 44183473 44185877 44183473 ID=Msa0071870-mRNA-1;Parent=Msa0071870;Name=Msa0071870-mRNA-1;_AED=0.34;_eAED=0.35;_QI=0|0|0|0.5|1|1|4|0|559
chr1_2 exon 44185244 44185877 44185244 ID=Msa0071870-mRNA-1:exon:13335;Parent=Msa0071870-mRNA-1
chr1_2 exon 44183781 44184727 44183781 ID=Msa0071870-mRNA-1:exon:13334;Parent=Msa0071870-mRNA-1
chr1_2 exon 44183616 44183681 44183616 ID=Msa0071870-mRNA-1:exon:13333;Parent=Msa0071870-mRNA-1
chr1_2 exon 44183473 44183505 44183473 ID=Msa0071870-mRNA-1:exon:13332;Parent=Msa0071870-mRNA-1
chr1_2 CDS 44185244 44185877 44185244 ID=Msa0071870-mRNA-1:cds;Parent=Msa0071870-mRNA-1
chr1_2 CDS 44183781 44184727 44183781 ID=Msa0071870-mRNA-1:cds;Parent=Msa0071870-mRNA-1
chr1_2 CDS 44183616 44183681 44183616 ID=Msa0071870-mRNA-1:cds;Parent=Msa0071870-mRNA-1
chr1_2 CDS 44183473 44183505 44183473 ID=Msa0071870-mRNA-1:cds;Parent=Msa0071870-mRNA-1
Gene Sequence

>Msa0071870

ATGGAACCCATTGATGAAAATGAAGAACATGTTATAAATGAGACCGTCAATAATGAATCATATGTTGGTGATTTAGAGGCTAACAATGTTCAACAACCTTCTCTTGGAATGGAATTTGAGTCACAAGAAGATGCTTATTCTTTCTATGTTCAATATGCTAAAAGTGTCGGATTTGGTGTATCCATTAAAAGTAGTCGCCGTTCAAAAATTTCTAGAGAATTTATTGATGTGAAATATGCTTGCACACGATATGGGAAAAAGCGAGAGTCGACCGCACAAAATCCACGTCCTTGTTTGAAGGTGGAATGTGAGGCTGGCTTACATATTAAAAGAAGATGTGATGGAAAATGGGTGGTCCATGGCTTCATCAAAGATCACAATCATGAACTTTTCCCAACATATGCACATTATTTTCCTTGCCATAGAACCATCAATAAAGCTCAGCAGAATTGTATTGAAACTTTGCAACATGTTGGAGTGAGAACAAGCAAAATTTATGCCACAATGGCCAAACAACACAGAGGATATGAGAAAGTTGGTTGCTTGGAGAAAGATGTTAGAAATTATTTAGATAAGGACCGTCGTTTGAATTTAGAATCTGGAGATGCAAATGCAATGCTGGAGTATTTTATGCAAATGGTAGAGAAATTTCAACTATCATACTTAGAGGATGGGTGGATTCAGTCTTTATATGAAGAACGTAAACATTGGGTTCCTGTTTACATGAAAGATACTTTTTTCGGTGGCATGTCAACAACTCAAAGATCAGAGAGCATCAACTCTTTTTTTGACAAATATGTAGGCAAGAAAACTACATTGAAAGAATTTGTTGAAAAATATGAAGTTGCTTTGGAAGATAGGGAAGAAGCAGAAATGCATGCTGATTTTAATACATGGCATAAACAACCAGTCCTTAAAACTCCATCACCTTTTGAGAAGCAAATGTCAATGATTTATACACATGAAGTATTCAAAAAGTTCCAAGTTGAAATTACGGGATTATCTGGATGTCATCTCAGGAAAAGGAACGAAGATAGTCAGCTCACCTCTTTTACAATATTCGACTTTGGTAATAGGGAAGAATTTGTTGTAGAGTGGGATGCATCGAAAGAGGAAATTTCTTGCATATGTCGTTTGTTTGAGTATAATGGGTATCTTTGTAGACATTCATTGATGGCCCTCCAATATTGTGGTATCTTTGTTGTCCCATCACACTACATATTGAAAAGATGGACAAAGGATATCAGAAGTCGGCATCATAAAAGAAAAATTAATGAAGATATTTGTTCGAAGAAGGAGAGATATGATCGTTTGTATCCGAAAGTCTCTCAATTGTTGGAGGAAGGATCATTAACTAATGAGAGTTATAACTTTGCATGTCATGCACTGGAAGAGGCCTTGAAACAATGTGCATTCCTTAACCGATCCTTAAAAAATAGCCCAAAAAATAGCAGAAAGAGCACTTTGCTTGACAAGAAACTACTTGATCCTCAAGTTTCGAAAACAAAAGGGGCACCGAAAAGAATAAAGAGCGGCATTGAAAGAGGTCGAAAGAGAACATCTGCTGGTAGCGTGAAAAAGGCTGCAATCGTTGAAAAAGGAGCAATGTCTGTCACTGATGAAGTTGTGGCTGCATCAACATCAATGGTGACTTTATCAACATCAGTGGCTGCACTTTGA
Protein sequence

>Msa0071870

MEPIDENEEHVINETVNNESYVGDLEANNVQQPSLGMEFESQEDAYSFYVQYAKSVGFGVSIKSSRRSKISREFIDVKYACTRYGKKRESTAQNPRPCLKVECEAGLHIKRRCDGKWVVHGFIKDHNHELFPTYAHYFPCHRTINKAQQNCIETLQHVGVRTSKIYATMAKQHRGYEKVGCLEKDVRNYLDKDRRLNLESGDANAMLEYFMQMVEKFQLSYLEDGWIQSLYEERKHWVPVYMKDTFFGGMSTTQRSESINSFFDKYVGKKTTLKEFVEKYEVALEDREEAEMHADFNTWHKQPVLKTPSPFEKQMSMIYTHEVFKKFQVEITGLSGCHLRKRNEDSQLTSFTIFDFGNREEFVVEWDASKEEISCICRLFEYNGYLCRHSLMALQYCGIFVVPSHYILKRWTKDIRSRHHKRKINEDICSKKERYDRLYPKVSQLLEEGSLTNESYNFACHALEEALKQCAFLNRSLKNSPKNSRKSTLLDKKLLDPQVSKTKGAPKRIKSGIERGRKRTSAGSVKKAAIVEKGAMSVTDEVVAASTSMVTLSTSVAAL*