AlfalfaGEDB | Msa0072230

M. sativa cultivar zhongmu-4 / Msa0072230

KEGG: -
GO: GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
PFAM: PF00010.29

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0072230	KEH42071.1	94.569	313	13	3	1	312	178	487	0.0	599

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0072230	sp\|Q9SA82\|BH052_ARATH	41.520	171	97	2	135	305	95	262	3.02e-28	113

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0072230	A0A072VKB3	94.569	313	13	3	1	312	178	487	0.0	599

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TFs/TRs:

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Gene ID	Type	Classification
Msa0072230	TF	bHLH

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0072230	MtrunA17_Chr1g0179061	94.628	242	10	2	1	241	1	240	4.81e-168	466
Msa0072230	MtrunA17_Chr2g0311101	81.677	322	25	10	1	312	13	310	3.28e-163	456
Msa0072230	MtrunA17_Chr8g0384141	58.491	53	22	0	182	234	125	177	2.04e-13	68.9
Msa0072230	MtrunA17_Chr3g0134001	58.491	53	22	0	182	234	182	234	1.33e-12	67.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0072230	AT1G30670.1	41.520	171	97	2	135	305	95	262	3.07e-29	113
Msa0072230	AT2G34820.1	42.254	213	115	4	97	305	81	289	2.91e-28	110
Msa0072230	AT3G21330.1	60.377	53	21	0	182	234	280	332	2.16e-13	70.5
Msa0072230	AT5G01305.1	50.000	58	29	0	182	239	48	105	1.37e-12	65.5
Msa0072230	AT4G00120.1	52.830	53	25	0	182	234	123	175	6.64e-12	63.9

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Find 54 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATAAAACTATTCTTGCTT+TGG	0.325467	1_2:+44910006	None:intergenic
AAGCAAAAGGGTTAGGGTTA+GGG	0.345934	1_2:+44911365	None:intergenic
AAGGGTCTGAAACAGCTTGC+TGG	0.388228	1_2:-44910048	Msa0072230:CDS
AAGTTGTTGGTAGTTTGAAT+AGG	0.402079	1_2:+44911751	None:intergenic
AAGTTTCTTCAAGCTCAAGT+TGG	0.567049	1_2:-44911130	Msa0072230:CDS
AATAGTTAGAGGGAAAATGG+TGG	0.625963	1_2:+44911677	None:intergenic
AATGTGGTGACAAACTCTTT+TGG	0.390869	1_2:+44910111	None:intergenic
ACAAGTAGTTGATCTTGACA+AGG	0.633389	1_2:+44911577	None:intergenic
ACGCCAAAAGCTATGCTACG+AGG	0.715032	1_2:-44911458	Msa0072230:CDS
ACTGAGAAGACACAAGAGCT+TGG	0.499993	1_2:-44911220	Msa0072230:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGTAGTGATTTCTAAGTTGT+TGG	+	chr1_2:44910078-44910097	None:intergenic	30.0%
TCAAATAGTTAGAGGGAAAA+TGG	+	chr1_2:44910142-44910161	None:intergenic	30.0%
ACTCAAATGATTACAAGCAA+GGG	+	chr1_2:44911009-44911028	None:intergenic	30.0%
TACTCAAATGATTACAAGCA+AGG	+	chr1_2:44911010-44911029	None:intergenic	30.0%
TAATGCTGTTGTTGTAGATT+TGG	-	chr1_2:44911118-44911137	Msa0072230:CDS	30.0%
TACAGTTTCTCTTGAACAAA+TGG	+	chr1_2:44911660-44911679	None:intergenic	30.0%
ATCATTATGATTGCTCAATG+TGG	+	chr1_2:44911721-44911740	None:intergenic	30.0%
ATCAAAACCTACCATTCTTA+AGG	-	chr1_2:44911746-44911765	Msa0072230:CDS	30.0%
TCAAAACCTACCATTCTTAA+GGG	-	chr1_2:44911747-44911766	Msa0072230:CDS	30.0%
AGTAGTGATTTCTAAGTTGT+TGG	+	chr1_2:44910078-44910097	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	44910014	44911821	44910014	ID=Msa0072230;Name=Msa0072230
chr1_2	mRNA	44910014	44911821	44910014	ID=Msa0072230-mRNA-1;Parent=Msa0072230;Name=Msa0072230-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0\|0\|0\|1\|1\|1\|2\|0\|312
chr1_2	exon	44911099	44911821	44911099	ID=Msa0072230-mRNA-1:exon:13552;Parent=Msa0072230-mRNA-1
chr1_2	exon	44910014	44910229	44910014	ID=Msa0072230-mRNA-1:exon:13551;Parent=Msa0072230-mRNA-1
chr1_2	CDS	44911099	44911821	44911099	ID=Msa0072230-mRNA-1:cds;Parent=Msa0072230-mRNA-1
chr1_2	CDS	44910014	44910229	44910014	ID=Msa0072230-mRNA-1:cds;Parent=Msa0072230-mRNA-1

Gene Sequence

>Msa0072230

ATGGGAGCACTTAGCACATACTTCAACTATAATTGTTACCCTTATCAACCTATTCAAACTACCAACAACTTAGAAATCACTACTTTTCAACATCATGAACAAGAACAATTTGTGCAACAAAACCACCATTTTCCCTCTAACTATTTGAATGAAACTTCTCTTTTAGATGAAAGCTTCATTTTTCAAACCCCTTGTTTTTACTCAAATGAAACTTACCCTAACCCTTGTCAAGATCAACTACTTGTTGACTCCACTTTTTCTTCTCAAAATGATGGCTTTGTTTCAATGAATGAAATTTTCCCAAATGAGGAAGATTTCACCAATTACCTTACATGTCCAAAACGCCAAAAGCTATGCTACGAGGAGAAAAGAGAGGAACCACAACAAGAGCTTTTGAACTCAACCAATTTTTTTGTGGATGAGTTTATGACTAACCCTAACCCTAACCCTTTTGCTTCCTTTGAGGTAGAACCCTTTGCTGCTTCAAAAATTGTTGATGTTGTTCAATGTGAGAAGAAAGTTGGTGAAAGGACTATCTCGTCGCAGAGTATCGCGGCGAGAGAAAGGAGAAGGAAGATAACTGAGAAGACACAAGAGCTTGGGAAGTTGGTTCCTGGTGGACCAAAGATGAACACAGCAGAGATGCTTAATGCTGCTGCTAATTATGTCAAGTTTCTTCAAGCTCAAGTTGGAATGCTTCAACTTATGGAAACATTTAACAAGGAAGAAAAGGAACCTCCTCCAAGTGAAGATCTACACAAACTTCTTCTTTCTCCATTTGTTCAAGAGAAACTGTATTCAGAAGAAAAGTGCTTTGTTCCAAAAGAGTTTGTCACCACATTGAGCAATCATAATGATGTTCAATCAAAACCTACCATTCTTAAGGGTCTGAAACAGCTTGCTGGGACTGAGATTGAGAAGAAACCAAAGCAAGAATAG

Protein sequence

>Msa0072230

MGALSTYFNYNCYPYQPIQTTNNLEITTFQHHEQEQFVQQNHHFPSNYLNETSLLDESFIFQTPCFYSNETYPNPCQDQLLVDSTFSSQNDGFVSMNEIFPNEEDFTNYLTCPKRQKLCYEEKREEPQQELLNSTNFFVDEFMTNPNPNPFASFEVEPFAASKIVDVVQCEKKVGERTISSQSIAARERRRKITEKTQELGKLVPGGPKMNTAEMLNAAANYVKFLQAQVGMLQLMETFNKEEKEPPPSEDLHKLLLSPFVQEKLYSEEKCFVPKEFVTTLSNHNDVQSKPTILKGLKQLAGTEIEKKPKQE*