Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0073290 | A0A396JYN9 | 55.970 | 268 | 36 | 7 | 15 | 279 | 29 | 217 | 4.77e-74 | 238 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0073290 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0073290 | MtrunA17_Chr1g0180581 | 55.970 | 268 | 36 | 7 | 15 | 279 | 29 | 217 | 9.18e-78 | 238 |
| Msa0073290 | MtrunA17_Chr1g0180581 | 34.783 | 184 | 109 | 4 | 180 | 360 | 45 | 220 | 4.34e-13 | 67.8 |
| Msa0073290 | MtrunA17_Chr1g0193731 | 48.773 | 326 | 81 | 15 | 15 | 314 | 23 | 288 | 1.16e-60 | 197 |
| Msa0073290 | MtrunA17_Chr7g0214511 | 48.551 | 276 | 58 | 11 | 22 | 250 | 43 | 281 | 2.12e-57 | 188 |
| Msa0073290 | MtrunA17_Chr1g0180571 | 72.308 | 130 | 36 | 0 | 192 | 321 | 13 | 142 | 1.23e-54 | 176 |
| Msa0073290 | MtrunA17_Chr1g0169561 | 40.664 | 241 | 88 | 9 | 41 | 250 | 94 | 310 | 8.05e-34 | 127 |
| Msa0073290 | MtrunA17_Chr1g0169521 | 39.256 | 242 | 90 | 9 | 41 | 250 | 94 | 310 | 9.45e-30 | 116 |
| Msa0073290 | MtrunA17_Chr1g0174001 | 42.778 | 180 | 67 | 6 | 103 | 250 | 14 | 189 | 7.67e-29 | 110 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 58 sgRNAs with CRISPR-Local
Find 244 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAGAGAAAGAAGGGTATT+TGG | 0.170547 | 1_2:-46766709 | None:intergenic |
| AATGAAGGTGAAACAGAATT+AGG | 0.205798 | 1_2:+46768411 | Msa0073290:CDS |
| CTTAGCGCTTGCCGTTTCTT+AGG | 0.266834 | 1_2:-46768102 | None:intergenic |
| CGTTGCCAGGCCCTTGGATC+AGG | 0.275748 | 1_2:+46766924 | Msa0073290:CDS |
| AACCAAGACGAGTAACTAAT+TGG | 0.277922 | 1_2:-46768808 | None:intergenic |
| AAAGAGAAAGAAGGGTATTT+GGG | 0.313760 | 1_2:-46766708 | None:intergenic |
| TGAATTACCGTGGTGCTAAA+AGG | 0.318800 | 1_2:+46768229 | Msa0073290:CDS |
| TCTTGCCTTTAGCACTTGTT+AGG | 0.323701 | 1_2:-46768320 | None:intergenic |
| TAATAATAATAAGAAGAATA+AGG | 0.378070 | 1_2:+46768284 | Msa0073290:CDS |
| ACGGTAATTCACATTGATAT+TGG | 0.393422 | 1_2:-46768217 | None:intergenic |
| TCATCTTCAAAATCATCATT+TGG | 0.396579 | 1_2:-46768783 | None:intergenic |
| ACTTCTAACAAAGCTTTGAA+TGG | 0.400226 | 1_2:+46766889 | Msa0073290:CDS |
| ATGAAGGTGAAACAGAATTA+GGG | 0.423059 | 1_2:+46768412 | Msa0073290:CDS |
| TATTCTGTTCCTAATGATGC+TGG | 0.432407 | 1_2:+46766823 | Msa0073290:CDS |
| AGGAAGATGGTGCAACAGTT+GGG | 0.439717 | 1_2:-46768050 | None:intergenic |
| ACAGTTGGGGAGTGACATAT+TGG | 0.441011 | 1_2:-46768036 | None:intergenic |
| AAATTCTTCAAATCATTACT+TGG | 0.447095 | 1_2:-46768705 | None:intergenic |
| GACAATATAGTGGCGTTGCC+AGG | 0.455494 | 1_2:+46766911 | Msa0073290:CDS |
| CTGGAAAACAGAAGATCATA+TGG | 0.462300 | 1_2:+46766791 | Msa0073290:CDS |
| GAACTTGCTGCTTCTAATCA+TGG | 0.484514 | 1_2:+46768369 | Msa0073290:CDS |
| GAGGAAGATGGTGCAACAGT+TGG | 0.487961 | 1_2:-46768051 | None:intergenic |
| AAATTCTTTACATCATAACT+TGG | 0.493765 | 1_2:-46768471 | None:intergenic |
| GTTGCCAGGCCCTTGGATCA+GGG | 0.494516 | 1_2:+46766925 | Msa0073290:CDS |
| TCTTCGACAACTAATGATGC+TGG | 0.497779 | 1_2:+46766772 | Msa0073290:CDS |
| AATCAATGAAAGAGAAAGAA+GGG | 0.506201 | 1_2:-46766716 | None:intergenic |
| AAATTCTTCACACCATCACT+TGG | 0.508172 | 1_2:-46768666 | None:intergenic |
| GAAGAGAAGAAGATTAATGA+AGG | 0.510676 | 1_2:+46768396 | Msa0073290:CDS |
| TCAAACATCACATGATTGCA+AGG | 0.516927 | 1_2:+46768347 | Msa0073290:CDS |
| ATCTTCCTCTGCAAGCTATG+AGG | 0.522500 | 1_2:+46768065 | Msa0073290:CDS |
| TATATCTCGTGGCAGTTTCG+AGG | 0.528199 | 1_2:+46768185 | Msa0073290:CDS |
| AACACCCTGATCCAAGGGCC+TGG | 0.529902 | 1_2:-46766929 | None:intergenic |
| GCATTCCTAACAAGTGCTAA+AGG | 0.530233 | 1_2:+46768315 | Msa0073290:CDS |
| TAATCAATGAAAGAGAAAGA+AGG | 0.532527 | 1_2:-46766717 | None:intergenic |
| AAATTCTTCACATCTTCACT+TGG | 0.536473 | 1_2:-46768549 | None:intergenic |
| TAGTGGCGTTGCCAGGCCCT+TGG | 0.536812 | 1_2:+46766918 | Msa0073290:CDS |
| GCGGAGCCACATTGTGGTGA+GGG | 0.545317 | 1_2:-46768014 | None:intergenic |
| TCATAGCTTGCAGAGGAAGA+TGG | 0.548781 | 1_2:-46768063 | None:intergenic |
| AAATCGAACACCCTGATCCA+AGG | 0.552565 | 1_2:-46766935 | None:intergenic |
| AAATTCTTCAAATCATCACT+TGG | 0.555556 | 1_2:-46768588 | None:intergenic |
| ACTTTCTACCACCTAAGAAA+CGG | 0.555851 | 1_2:+46768091 | Msa0073290:CDS |
| AGATTCTTCACATCATCACT+TGG | 0.563672 | 1_2:-46768510 | None:intergenic |
| AAATTCTTCACATCATCACT+TGG | 0.564670 | 1_2:-46768627 | None:intergenic |
| AAATTCTTCACATCATCACT+TGG | 0.564670 | 1_2:-46768744 | None:intergenic |
| GCTTTGAATGGACAATATAG+TGG | 0.567969 | 1_2:+46766901 | Msa0073290:CDS |
| TTCATGTGATGTTTGCAACA+AGG | 0.571040 | 1_2:+46766861 | Msa0073290:CDS |
| AGCGCTTGCCGTTTCTTAGG+TGG | 0.574629 | 1_2:-46768099 | None:intergenic |
| CGGAGCCACATTGTGGTGAG+GGG | 0.585326 | 1_2:-46768013 | None:intergenic |
| ATATCTCGTGGCAGTTTCGA+GGG | 0.586568 | 1_2:+46768186 | Msa0073290:CDS |
| TTGAACGAGTTTCCAAGTGA+TGG | 0.598126 | 1_2:+46768654 | Msa0073290:CDS |
| GGAAGATGGTGCAACAGTTG+GGG | 0.603434 | 1_2:-46768049 | None:intergenic |
| GGCGGAGCCACATTGTGGTG+AGG | 0.608036 | 1_2:-46768015 | None:intergenic |
| AATCGAACACCCTGATCCAA+GGG | 0.611283 | 1_2:-46766934 | None:intergenic |
| GTTGGGGAGTGACATATTGG+CGG | 0.613158 | 1_2:-46768033 | None:intergenic |
| ACTCTGTTGCATATATCTCG+TGG | 0.667189 | 1_2:+46768174 | Msa0073290:CDS |
| AATATCAATGTGAATTACCG+TGG | 0.667743 | 1_2:+46768219 | Msa0073290:CDS |
| GTGATCCTCATAGCTTGCAG+AGG | 0.672732 | 1_2:-46768070 | None:intergenic |
| TGCATCCCCTCACCACAATG+TGG | 0.695414 | 1_2:+46768008 | Msa0073290:CDS |
| ATATTGGCGGAGCCACATTG+TGG | 0.754113 | 1_2:-46768020 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGAATATAATATTATTAGA+AGG | - | chr1_2:46767042-46767061 | None:intergenic | 10.0% |
| !!! | TCATTAATTCTTTAAAAAAA+TGG | + | chr1_2:46767403-46767422 | Msa0073290:intron | 10.0% |
| !! | ACTAAATTGAATAATAAAAT+GGG | - | chr1_2:46767443-46767462 | None:intergenic | 10.0% |
| !! | AACTAAATTGAATAATAAAA+TGG | - | chr1_2:46767444-46767463 | None:intergenic | 10.0% |
| !! | TAATAATAATAAGAAGAATA+AGG | + | chr1_2:46768284-46768303 | Msa0073290:CDS | 10.0% |
| !! | TTGAATATAATATTATTAGA+AGG | - | chr1_2:46767042-46767061 | None:intergenic | 10.0% |
| !!! | TCATTAATTCTTTAAAAAAA+TGG | + | chr1_2:46767403-46767422 | Msa0073290:intron | 10.0% |
| !! | ACTAAATTGAATAATAAAAT+GGG | - | chr1_2:46767443-46767462 | None:intergenic | 10.0% |
| !! | AACTAAATTGAATAATAAAA+TGG | - | chr1_2:46767444-46767463 | None:intergenic | 10.0% |
| !! | TAATAATAATAAGAAGAATA+AGG | + | chr1_2:46768284-46768303 | Msa0073290:CDS | 10.0% |
| !! | ACAATATTCAATTTACATAT+TGG | + | chr1_2:46767014-46767033 | Msa0073290:intron | 15.0% |
| !!! | TATCAATATGTTGATTTTTT+TGG | - | chr1_2:46767787-46767806 | None:intergenic | 15.0% |
| !! | ACAATATTCAATTTACATAT+TGG | + | chr1_2:46767014-46767033 | Msa0073290:intron | 15.0% |
| !!! | TATCAATATGTTGATTTTTT+TGG | - | chr1_2:46767787-46767806 | None:intergenic | 15.0% |
| !!! | TTTTGGTTTTGTTATGATTA+GGG | - | chr1_2:46766747-46766766 | None:intergenic | 20.0% |
| !!! | TTTTTGGTTTTGTTATGATT+AGG | - | chr1_2:46766748-46766767 | None:intergenic | 20.0% |
| !!! | TGGAATTTTTTTCTTTTGTT+TGG | + | chr1_2:46767310-46767329 | Msa0073290:intron | 20.0% |
| !! | TATTACACTAATGAATTCTA+TGG | - | chr1_2:46767717-46767736 | None:intergenic | 20.0% |
| !! | TCATTAGTGTAATAACAAAA+CGG | + | chr1_2:46767723-46767742 | Msa0073290:intron | 20.0% |
| !! | TTTATATAGTCAAAATTGAG+TGG | - | chr1_2:46767749-46767768 | None:intergenic | 20.0% |
| !! | TGGTGCAAAAAAATAAAATT+AGG | + | chr1_2:46767934-46767953 | Msa0073290:intron | 20.0% |
| !! | TGCAAAAAAATAAAATTAGG+AGG | + | chr1_2:46767937-46767956 | Msa0073290:intron | 20.0% |
| !! | TTCAAAATGCAAAAACAATA+GGG | + | chr1_2:46767960-46767979 | Msa0073290:intron | 20.0% |
| !! | AATAGGGATATATAAATTTG+AGG | + | chr1_2:46767976-46767995 | Msa0073290:intron | 20.0% |
| !! | ATAGGGATATATAAATTTGA+GGG | + | chr1_2:46767977-46767996 | Msa0073290:intron | 20.0% |
| !! | AAATTCTTTACATCATAACT+TGG | - | chr1_2:46768474-46768493 | None:intergenic | 20.0% |
| !! | AAATTCTTCAAATCATTACT+TGG | - | chr1_2:46768708-46768727 | None:intergenic | 20.0% |
| !!! | TTTTGGTTTTGTTATGATTA+GGG | - | chr1_2:46766747-46766766 | None:intergenic | 20.0% |
| !!! | TTTTTGGTTTTGTTATGATT+AGG | - | chr1_2:46766748-46766767 | None:intergenic | 20.0% |
| !!! | TGGAATTTTTTTCTTTTGTT+TGG | + | chr1_2:46767310-46767329 | Msa0073290:intron | 20.0% |
| !! | TATTACACTAATGAATTCTA+TGG | - | chr1_2:46767717-46767736 | None:intergenic | 20.0% |
| !! | TCATTAGTGTAATAACAAAA+CGG | + | chr1_2:46767723-46767742 | Msa0073290:intron | 20.0% |
| !! | TTTATATAGTCAAAATTGAG+TGG | - | chr1_2:46767749-46767768 | None:intergenic | 20.0% |
| !! | TGGTGCAAAAAAATAAAATT+AGG | + | chr1_2:46767934-46767953 | Msa0073290:intron | 20.0% |
| !! | TGCAAAAAAATAAAATTAGG+AGG | + | chr1_2:46767937-46767956 | Msa0073290:intron | 20.0% |
| !! | TTCAAAATGCAAAAACAATA+GGG | + | chr1_2:46767960-46767979 | Msa0073290:intron | 20.0% |
| !! | AATAGGGATATATAAATTTG+AGG | + | chr1_2:46767976-46767995 | Msa0073290:intron | 20.0% |
| !! | ATAGGGATATATAAATTTGA+GGG | + | chr1_2:46767977-46767996 | Msa0073290:intron | 20.0% |
| !! | AAATTCTTTACATCATAACT+TGG | - | chr1_2:46768474-46768493 | None:intergenic | 20.0% |
| !! | AAATTCTTCAAATCATTACT+TGG | - | chr1_2:46768708-46768727 | None:intergenic | 20.0% |
| ! | AATCAATGAAAGAGAAAGAA+GGG | - | chr1_2:46766719-46766738 | None:intergenic | 25.0% |
| ! | TAATCAATGAAAGAGAAAGA+AGG | - | chr1_2:46766720-46766739 | None:intergenic | 25.0% |
| ! | TATCTCTTGGTATAAATTCA+TGG | + | chr1_2:46767191-46767210 | Msa0073290:intron | 25.0% |
| ! | ATCTCTTGGTATAAATTCAT+GGG | + | chr1_2:46767192-46767211 | Msa0073290:intron | 25.0% |
| ! | AAAATTCCACTAAAACATTC+AGG | - | chr1_2:46767299-46767318 | None:intergenic | 25.0% |
| !!! | TGATTTTTTTGGATATGCAA+TGG | - | chr1_2:46767776-46767795 | None:intergenic | 25.0% |
| ! | GTTCAAAATGCAAAAACAAT+AGG | + | chr1_2:46767959-46767978 | Msa0073290:intron | 25.0% |
| ! | AAATTCTTCAAATCATCACT+TGG | - | chr1_2:46768591-46768610 | None:intergenic | 25.0% |
| ! | TCATCTTCAAAATCATCATT+TGG | - | chr1_2:46768786-46768805 | None:intergenic | 25.0% |
| ! | AATCAATGAAAGAGAAAGAA+GGG | - | chr1_2:46766719-46766738 | None:intergenic | 25.0% |
| ! | TAATCAATGAAAGAGAAAGA+AGG | - | chr1_2:46766720-46766739 | None:intergenic | 25.0% |
| ! | TATCTCTTGGTATAAATTCA+TGG | + | chr1_2:46767191-46767210 | Msa0073290:intron | 25.0% |
| ! | ATCTCTTGGTATAAATTCAT+GGG | + | chr1_2:46767192-46767211 | Msa0073290:intron | 25.0% |
| ! | AAAATTCCACTAAAACATTC+AGG | - | chr1_2:46767299-46767318 | None:intergenic | 25.0% |
| !!! | TGATTTTTTTGGATATGCAA+TGG | - | chr1_2:46767776-46767795 | None:intergenic | 25.0% |
| ! | GTTCAAAATGCAAAAACAAT+AGG | + | chr1_2:46767959-46767978 | Msa0073290:intron | 25.0% |
| ! | AAATTCTTCAAATCATCACT+TGG | - | chr1_2:46768591-46768610 | None:intergenic | 25.0% |
| ! | TCATCTTCAAAATCATCATT+TGG | - | chr1_2:46768786-46768805 | None:intergenic | 25.0% |
| !! | AAAGAGAAAGAAGGGTATTT+GGG | - | chr1_2:46766711-46766730 | None:intergenic | 30.0% |
| ! | AGTTGTCGAAGAAATGTTTT+TGG | - | chr1_2:46766764-46766783 | None:intergenic | 30.0% |
| !!! | TTTTGTTTTCCAGCATCATT+AGG | - | chr1_2:46766835-46766854 | None:intergenic | 30.0% |
| !! | ACTTCTAACAAAGCTTTGAA+TGG | + | chr1_2:46766889-46766908 | Msa0073290:CDS | 30.0% |
| AGACATTCGTAAAGTATGTT+TGG | - | chr1_2:46767107-46767126 | None:intergenic | 30.0% | |
| ! | TTTAGAACATTAAACCTCGT+AGG | - | chr1_2:46767130-46767149 | None:intergenic | 30.0% |
| TATACCAAGAGATATGTGTT+CGG | - | chr1_2:46767185-46767204 | None:intergenic | 30.0% | |
| ! | TTAGGAAGCATAGAAATACA+CGG | - | chr1_2:46767262-46767281 | None:intergenic | 30.0% |
| CACCAAAGAAAATTCACTTT+CGG | + | chr1_2:46767333-46767352 | Msa0073290:intron | 30.0% | |
| ACCAAAGAAAATTCACTTTC+GGG | + | chr1_2:46767334-46767353 | Msa0073290:intron | 30.0% | |
| GAACAATTGTCTCATGAATT+TGG | - | chr1_2:46767385-46767404 | None:intergenic | 30.0% | |
| AATTAACACGAAACTCCATA+GGG | - | chr1_2:46767493-46767512 | None:intergenic | 30.0% | |
| TTTGTTTGTATGATATGTGC+TGG | - | chr1_2:46767541-46767560 | None:intergenic | 30.0% | |
| TGCAATCTTTATCTGATTCT+TGG | - | chr1_2:46767585-46767604 | None:intergenic | 30.0% | |
| ! | TCATAAACTTGCTTCAAACA+AGG | + | chr1_2:46767615-46767634 | Msa0073290:intron | 30.0% |
| AGTATCAAGAATGTATCGTA+GGG | - | chr1_2:46767657-46767676 | None:intergenic | 30.0% | |
| AAGTATCAAGAATGTATCGT+AGG | - | chr1_2:46767658-46767677 | None:intergenic | 30.0% | |
| GATACATTCTTGATACTTAG+TGG | + | chr1_2:46767660-46767679 | Msa0073290:intron | 30.0% | |
| TCTAACCTATATGCAATTTG+GGG | - | chr1_2:46767858-46767877 | None:intergenic | 30.0% | |
| CTCTAACCTATATGCAATTT+GGG | - | chr1_2:46767859-46767878 | None:intergenic | 30.0% | |
| TCTCTAACCTATATGCAATT+TGG | - | chr1_2:46767860-46767879 | None:intergenic | 30.0% | |
| TGAATGAAGAGAAAGTTGTT+TGG | + | chr1_2:46767898-46767917 | Msa0073290:intron | 30.0% | |
| GAATGAAGAGAAAGTTGTTT+GGG | + | chr1_2:46767899-46767918 | Msa0073290:intron | 30.0% | |
| GGATATATAAATTTGAGGGT+TGG | + | chr1_2:46767981-46768000 | Msa0073290:intron | 30.0% | |
| ACGGTAATTCACATTGATAT+TGG | - | chr1_2:46768220-46768239 | None:intergenic | 30.0% | |
| AATATCAATGTGAATTACCG+TGG | + | chr1_2:46768219-46768238 | Msa0073290:CDS | 30.0% | |
| GAAGAGAAGAAGATTAATGA+AGG | + | chr1_2:46768396-46768415 | Msa0073290:CDS | 30.0% | |
| AATGAAGGTGAAACAGAATT+AGG | + | chr1_2:46768411-46768430 | Msa0073290:CDS | 30.0% | |
| ATGAAGGTGAAACAGAATTA+GGG | + | chr1_2:46768412-46768431 | Msa0073290:CDS | 30.0% | |
| AAATTCTTCACATCTTCACT+TGG | - | chr1_2:46768552-46768571 | None:intergenic | 30.0% | |
| AAATTCTTCACATCATCACT+TGG | - | chr1_2:46768630-46768649 | None:intergenic | 30.0% | |
| AAATTCTTCACATCATCACT+TGG | - | chr1_2:46768630-46768649 | None:intergenic | 30.0% | |
| !! | AAAGAGAAAGAAGGGTATTT+GGG | - | chr1_2:46766711-46766730 | None:intergenic | 30.0% |
| ! | AGTTGTCGAAGAAATGTTTT+TGG | - | chr1_2:46766764-46766783 | None:intergenic | 30.0% |
| !!! | TTTTGTTTTCCAGCATCATT+AGG | - | chr1_2:46766835-46766854 | None:intergenic | 30.0% |
| !! | ACTTCTAACAAAGCTTTGAA+TGG | + | chr1_2:46766889-46766908 | Msa0073290:CDS | 30.0% |
| AGACATTCGTAAAGTATGTT+TGG | - | chr1_2:46767107-46767126 | None:intergenic | 30.0% | |
| ! | TTTAGAACATTAAACCTCGT+AGG | - | chr1_2:46767130-46767149 | None:intergenic | 30.0% |
| TATACCAAGAGATATGTGTT+CGG | - | chr1_2:46767185-46767204 | None:intergenic | 30.0% | |
| ! | TTAGGAAGCATAGAAATACA+CGG | - | chr1_2:46767262-46767281 | None:intergenic | 30.0% |
| CACCAAAGAAAATTCACTTT+CGG | + | chr1_2:46767333-46767352 | Msa0073290:intron | 30.0% | |
| ACCAAAGAAAATTCACTTTC+GGG | + | chr1_2:46767334-46767353 | Msa0073290:intron | 30.0% | |
| GAACAATTGTCTCATGAATT+TGG | - | chr1_2:46767385-46767404 | None:intergenic | 30.0% | |
| AATTAACACGAAACTCCATA+GGG | - | chr1_2:46767493-46767512 | None:intergenic | 30.0% | |
| TTTGTTTGTATGATATGTGC+TGG | - | chr1_2:46767541-46767560 | None:intergenic | 30.0% | |
| TGCAATCTTTATCTGATTCT+TGG | - | chr1_2:46767585-46767604 | None:intergenic | 30.0% | |
| ! | TCATAAACTTGCTTCAAACA+AGG | + | chr1_2:46767615-46767634 | Msa0073290:intron | 30.0% |
| AGTATCAAGAATGTATCGTA+GGG | - | chr1_2:46767657-46767676 | None:intergenic | 30.0% | |
| AAGTATCAAGAATGTATCGT+AGG | - | chr1_2:46767658-46767677 | None:intergenic | 30.0% | |
| GATACATTCTTGATACTTAG+TGG | + | chr1_2:46767660-46767679 | Msa0073290:intron | 30.0% | |
| TCTAACCTATATGCAATTTG+GGG | - | chr1_2:46767858-46767877 | None:intergenic | 30.0% | |
| CTCTAACCTATATGCAATTT+GGG | - | chr1_2:46767859-46767878 | None:intergenic | 30.0% | |
| TCTCTAACCTATATGCAATT+TGG | - | chr1_2:46767860-46767879 | None:intergenic | 30.0% | |
| TGAATGAAGAGAAAGTTGTT+TGG | + | chr1_2:46767898-46767917 | Msa0073290:intron | 30.0% | |
| GAATGAAGAGAAAGTTGTTT+GGG | + | chr1_2:46767899-46767918 | Msa0073290:intron | 30.0% | |
| GGATATATAAATTTGAGGGT+TGG | + | chr1_2:46767981-46768000 | Msa0073290:intron | 30.0% | |
| ACGGTAATTCACATTGATAT+TGG | - | chr1_2:46768220-46768239 | None:intergenic | 30.0% | |
| AATATCAATGTGAATTACCG+TGG | + | chr1_2:46768219-46768238 | Msa0073290:CDS | 30.0% | |
| GAAGAGAAGAAGATTAATGA+AGG | + | chr1_2:46768396-46768415 | Msa0073290:CDS | 30.0% | |
| AATGAAGGTGAAACAGAATT+AGG | + | chr1_2:46768411-46768430 | Msa0073290:CDS | 30.0% | |
| ATGAAGGTGAAACAGAATTA+GGG | + | chr1_2:46768412-46768431 | Msa0073290:CDS | 30.0% | |
| AAATTCTTCACATCTTCACT+TGG | - | chr1_2:46768552-46768571 | None:intergenic | 30.0% | |
| AAATTCTTCACATCATCACT+TGG | - | chr1_2:46768630-46768649 | None:intergenic | 30.0% | |
| AAATTCTTCACATCATCACT+TGG | - | chr1_2:46768630-46768649 | None:intergenic | 30.0% | |
| !! | AGGGTATTTGGGTTTTTGAA+GGG | - | chr1_2:46766700-46766719 | None:intergenic | 35.0% |
| !!! | AAGGGTATTTGGGTTTTTGA+AGG | - | chr1_2:46766701-46766720 | None:intergenic | 35.0% |
| !! | GAAAGAGAAAGAAGGGTATT+TGG | - | chr1_2:46766712-46766731 | None:intergenic | 35.0% |
| CTGGAAAACAGAAGATCATA+TGG | + | chr1_2:46766791-46766810 | Msa0073290:CDS | 35.0% | |
| TATTCTGTTCCTAATGATGC+TGG | + | chr1_2:46766823-46766842 | Msa0073290:CDS | 35.0% | |
| TTCATGTGATGTTTGCAACA+AGG | + | chr1_2:46766861-46766880 | Msa0073290:CDS | 35.0% | |
| ! | GCTTTGAATGGACAATATAG+TGG | + | chr1_2:46766901-46766920 | Msa0073290:CDS | 35.0% |
| ! | TAGGAAGCATAGAAATACAC+GGG | - | chr1_2:46767261-46767280 | None:intergenic | 35.0% |
| ATTCCACTAAAACATTCAGG+CGG | - | chr1_2:46767296-46767315 | None:intergenic | 35.0% | |
| ! | TCCCGAAAGTGAATTTTCTT+TGG | - | chr1_2:46767338-46767357 | None:intergenic | 35.0% |
| CACAATCTTCATAGCAAAAG+AGG | + | chr1_2:46767466-46767485 | Msa0073290:intron | 35.0% | |
| CAATTAACACGAAACTCCAT+AGG | - | chr1_2:46767494-46767513 | None:intergenic | 35.0% | |
| TGGAGTTTCGTGTTAATTGA+AGG | + | chr1_2:46767495-46767514 | Msa0073290:intron | 35.0% | |
| TATGATATGTGCTGGAAACA+TGG | - | chr1_2:46767533-46767552 | None:intergenic | 35.0% | |
| CACAACACAGACATATCATT+AGG | + | chr1_2:46767831-46767850 | Msa0073290:intron | 35.0% | |
| !! | GAGAAAGTTGTTTGGGTTTT+TGG | + | chr1_2:46767906-46767925 | Msa0073290:intron | 35.0% |
| ACTTTCTACCACCTAAGAAA+CGG | + | chr1_2:46768091-46768110 | Msa0073290:CDS | 35.0% | |
| !!! | GTTTTTTCCTTTTAGCACCA+CGG | - | chr1_2:46768239-46768258 | None:intergenic | 35.0% |
| TCAAACATCACATGATTGCA+AGG | + | chr1_2:46768347-46768366 | Msa0073290:CDS | 35.0% | |
| AGATTCTTCACATCATCACT+TGG | - | chr1_2:46768513-46768532 | None:intergenic | 35.0% | |
| AAATTCTTCACACCATCACT+TGG | - | chr1_2:46768669-46768688 | None:intergenic | 35.0% | |
| !! | AGGGTATTTGGGTTTTTGAA+GGG | - | chr1_2:46766700-46766719 | None:intergenic | 35.0% |
| !!! | AAGGGTATTTGGGTTTTTGA+AGG | - | chr1_2:46766701-46766720 | None:intergenic | 35.0% |
| !! | GAAAGAGAAAGAAGGGTATT+TGG | - | chr1_2:46766712-46766731 | None:intergenic | 35.0% |
| CTGGAAAACAGAAGATCATA+TGG | + | chr1_2:46766791-46766810 | Msa0073290:CDS | 35.0% | |
| TATTCTGTTCCTAATGATGC+TGG | + | chr1_2:46766823-46766842 | Msa0073290:CDS | 35.0% | |
| TTCATGTGATGTTTGCAACA+AGG | + | chr1_2:46766861-46766880 | Msa0073290:CDS | 35.0% | |
| ! | GCTTTGAATGGACAATATAG+TGG | + | chr1_2:46766901-46766920 | Msa0073290:CDS | 35.0% |
| ! | TAGGAAGCATAGAAATACAC+GGG | - | chr1_2:46767261-46767280 | None:intergenic | 35.0% |
| ATTCCACTAAAACATTCAGG+CGG | - | chr1_2:46767296-46767315 | None:intergenic | 35.0% | |
| ! | TCCCGAAAGTGAATTTTCTT+TGG | - | chr1_2:46767338-46767357 | None:intergenic | 35.0% |
| CACAATCTTCATAGCAAAAG+AGG | + | chr1_2:46767466-46767485 | Msa0073290:intron | 35.0% | |
| CAATTAACACGAAACTCCAT+AGG | - | chr1_2:46767494-46767513 | None:intergenic | 35.0% | |
| TGGAGTTTCGTGTTAATTGA+AGG | + | chr1_2:46767495-46767514 | Msa0073290:intron | 35.0% | |
| TATGATATGTGCTGGAAACA+TGG | - | chr1_2:46767533-46767552 | None:intergenic | 35.0% | |
| CACAACACAGACATATCATT+AGG | + | chr1_2:46767831-46767850 | Msa0073290:intron | 35.0% | |
| !! | GAGAAAGTTGTTTGGGTTTT+TGG | + | chr1_2:46767906-46767925 | Msa0073290:intron | 35.0% |
| ACTTTCTACCACCTAAGAAA+CGG | + | chr1_2:46768091-46768110 | Msa0073290:CDS | 35.0% | |
| !!! | GTTTTTTCCTTTTAGCACCA+CGG | - | chr1_2:46768239-46768258 | None:intergenic | 35.0% |
| TCAAACATCACATGATTGCA+AGG | + | chr1_2:46768347-46768366 | Msa0073290:CDS | 35.0% | |
| AGATTCTTCACATCATCACT+TGG | - | chr1_2:46768513-46768532 | None:intergenic | 35.0% | |
| AAATTCTTCACACCATCACT+TGG | - | chr1_2:46768669-46768688 | None:intergenic | 35.0% | |
| TCTTCGACAACTAATGATGC+TGG | + | chr1_2:46766772-46766791 | Msa0073290:CDS | 40.0% | |
| TAGGACCCCAAATTGCATAT+AGG | + | chr1_2:46767850-46767869 | Msa0073290:intron | 40.0% | |
| ACTCTGTTGCATATATCTCG+TGG | + | chr1_2:46768174-46768193 | Msa0073290:CDS | 40.0% | |
| ! | TGAATTACCGTGGTGCTAAA+AGG | + | chr1_2:46768229-46768248 | Msa0073290:CDS | 40.0% |
| GCATTCCTAACAAGTGCTAA+AGG | + | chr1_2:46768315-46768334 | Msa0073290:CDS | 40.0% | |
| TCTTGCCTTTAGCACTTGTT+AGG | - | chr1_2:46768323-46768342 | None:intergenic | 40.0% | |
| !! | GAACTTGCTGCTTCTAATCA+TGG | + | chr1_2:46768369-46768388 | Msa0073290:CDS | 40.0% |
| TTGAACGAGTTTCCAAGTGA+TGG | + | chr1_2:46768654-46768673 | Msa0073290:CDS | 40.0% | |
| TCTTCGACAACTAATGATGC+TGG | + | chr1_2:46766772-46766791 | Msa0073290:CDS | 40.0% | |
| TAGGACCCCAAATTGCATAT+AGG | + | chr1_2:46767850-46767869 | Msa0073290:intron | 40.0% | |
| ACTCTGTTGCATATATCTCG+TGG | + | chr1_2:46768174-46768193 | Msa0073290:CDS | 40.0% | |
| ! | TGAATTACCGTGGTGCTAAA+AGG | + | chr1_2:46768229-46768248 | Msa0073290:CDS | 40.0% |
| GCATTCCTAACAAGTGCTAA+AGG | + | chr1_2:46768315-46768334 | Msa0073290:CDS | 40.0% | |
| TCTTGCCTTTAGCACTTGTT+AGG | - | chr1_2:46768323-46768342 | None:intergenic | 40.0% | |
| !! | GAACTTGCTGCTTCTAATCA+TGG | + | chr1_2:46768369-46768388 | Msa0073290:CDS | 40.0% |
| TTGAACGAGTTTCCAAGTGA+TGG | + | chr1_2:46768654-46768673 | Msa0073290:CDS | 40.0% | |
| AATCGAACACCCTGATCCAA+GGG | - | chr1_2:46766937-46766956 | None:intergenic | 45.0% | |
| AAATCGAACACCCTGATCCA+AGG | - | chr1_2:46766938-46766957 | None:intergenic | 45.0% | |
| CTTTACGAATGTCTCCTACG+AGG | + | chr1_2:46767113-46767132 | Msa0073290:intron | 45.0% | |
| GTTGCCGAACACATATCTCT+TGG | + | chr1_2:46767178-46767197 | Msa0073290:intron | 45.0% | |
| CAGGCGGTTGGAGAAAAATT+AGG | - | chr1_2:46767280-46767299 | None:intergenic | 45.0% | |
| CACTAAAACATTCAGGCGGT+TGG | - | chr1_2:46767292-46767311 | None:intergenic | 45.0% | |
| !! | CAACCGCCTGAATGTTTTAG+TGG | + | chr1_2:46767290-46767309 | Msa0073290:intron | 45.0% |
| CATAGCAAAAGAGGTCCCTA+TGG | + | chr1_2:46767475-46767494 | Msa0073290:intron | 45.0% | |
| !!! | TGTTTGGGTTTTTGGCTAGC+TGG | + | chr1_2:46767914-46767933 | Msa0073290:intron | 45.0% |
| ACAGTTGGGGAGTGACATAT+TGG | - | chr1_2:46768039-46768058 | None:intergenic | 45.0% | |
| AGGAAGATGGTGCAACAGTT+GGG | - | chr1_2:46768053-46768072 | None:intergenic | 45.0% | |
| ! | TCATAGCTTGCAGAGGAAGA+TGG | - | chr1_2:46768066-46768085 | None:intergenic | 45.0% |
| ATCTTCCTCTGCAAGCTATG+AGG | + | chr1_2:46768065-46768084 | Msa0073290:CDS | 45.0% | |
| TATATCTCGTGGCAGTTTCG+AGG | + | chr1_2:46768185-46768204 | Msa0073290:CDS | 45.0% | |
| ATATCTCGTGGCAGTTTCGA+GGG | + | chr1_2:46768186-46768205 | Msa0073290:CDS | 45.0% | |
| AATCGAACACCCTGATCCAA+GGG | - | chr1_2:46766937-46766956 | None:intergenic | 45.0% | |
| AAATCGAACACCCTGATCCA+AGG | - | chr1_2:46766938-46766957 | None:intergenic | 45.0% | |
| CTTTACGAATGTCTCCTACG+AGG | + | chr1_2:46767113-46767132 | Msa0073290:intron | 45.0% | |
| GTTGCCGAACACATATCTCT+TGG | + | chr1_2:46767178-46767197 | Msa0073290:intron | 45.0% | |
| CAGGCGGTTGGAGAAAAATT+AGG | - | chr1_2:46767280-46767299 | None:intergenic | 45.0% | |
| CACTAAAACATTCAGGCGGT+TGG | - | chr1_2:46767292-46767311 | None:intergenic | 45.0% | |
| !! | CAACCGCCTGAATGTTTTAG+TGG | + | chr1_2:46767290-46767309 | Msa0073290:intron | 45.0% |
| CATAGCAAAAGAGGTCCCTA+TGG | + | chr1_2:46767475-46767494 | Msa0073290:intron | 45.0% | |
| !!! | TGTTTGGGTTTTTGGCTAGC+TGG | + | chr1_2:46767914-46767933 | Msa0073290:intron | 45.0% |
| ACAGTTGGGGAGTGACATAT+TGG | - | chr1_2:46768039-46768058 | None:intergenic | 45.0% | |
| AGGAAGATGGTGCAACAGTT+GGG | - | chr1_2:46768053-46768072 | None:intergenic | 45.0% | |
| ! | TCATAGCTTGCAGAGGAAGA+TGG | - | chr1_2:46768066-46768085 | None:intergenic | 45.0% |
| ATCTTCCTCTGCAAGCTATG+AGG | + | chr1_2:46768065-46768084 | Msa0073290:CDS | 45.0% | |
| TATATCTCGTGGCAGTTTCG+AGG | + | chr1_2:46768185-46768204 | Msa0073290:CDS | 45.0% | |
| ATATCTCGTGGCAGTTTCGA+GGG | + | chr1_2:46768186-46768205 | Msa0073290:CDS | 45.0% | |
| GACAATATAGTGGCGTTGCC+AGG | + | chr1_2:46766911-46766930 | Msa0073290:CDS | 50.0% | |
| GCATAGAAATACACGGGTCG+TGG | - | chr1_2:46767255-46767274 | None:intergenic | 50.0% | |
| ATATTGGCGGAGCCACATTG+TGG | - | chr1_2:46768023-46768042 | None:intergenic | 50.0% | |
| GTTGGGGAGTGACATATTGG+CGG | - | chr1_2:46768036-46768055 | None:intergenic | 50.0% | |
| GGAAGATGGTGCAACAGTTG+GGG | - | chr1_2:46768052-46768071 | None:intergenic | 50.0% | |
| GAGGAAGATGGTGCAACAGT+TGG | - | chr1_2:46768054-46768073 | None:intergenic | 50.0% | |
| ! | GTGATCCTCATAGCTTGCAG+AGG | - | chr1_2:46768073-46768092 | None:intergenic | 50.0% |
| ! | CTTAGCGCTTGCCGTTTCTT+AGG | - | chr1_2:46768105-46768124 | None:intergenic | 50.0% |
| GACAATATAGTGGCGTTGCC+AGG | + | chr1_2:46766911-46766930 | Msa0073290:CDS | 50.0% | |
| GCATAGAAATACACGGGTCG+TGG | - | chr1_2:46767255-46767274 | None:intergenic | 50.0% | |
| ATATTGGCGGAGCCACATTG+TGG | - | chr1_2:46768023-46768042 | None:intergenic | 50.0% | |
| GTTGGGGAGTGACATATTGG+CGG | - | chr1_2:46768036-46768055 | None:intergenic | 50.0% | |
| GGAAGATGGTGCAACAGTTG+GGG | - | chr1_2:46768052-46768071 | None:intergenic | 50.0% | |
| GAGGAAGATGGTGCAACAGT+TGG | - | chr1_2:46768054-46768073 | None:intergenic | 50.0% | |
| ! | GTGATCCTCATAGCTTGCAG+AGG | - | chr1_2:46768073-46768092 | None:intergenic | 50.0% |
| ! | CTTAGCGCTTGCCGTTTCTT+AGG | - | chr1_2:46768105-46768124 | None:intergenic | 50.0% |
| TGCATCCCCTCACCACAATG+TGG | + | chr1_2:46768008-46768027 | Msa0073290:CDS | 55.0% | |
| ! | AGCGCTTGCCGTTTCTTAGG+TGG | - | chr1_2:46768102-46768121 | None:intergenic | 55.0% |
| TGCATCCCCTCACCACAATG+TGG | + | chr1_2:46768008-46768027 | Msa0073290:CDS | 55.0% | |
| ! | AGCGCTTGCCGTTTCTTAGG+TGG | - | chr1_2:46768102-46768121 | None:intergenic | 55.0% |
| GTTGCCAGGCCCTTGGATCA+GGG | + | chr1_2:46766925-46766944 | Msa0073290:CDS | 60.0% | |
| AACACCCTGATCCAAGGGCC+TGG | - | chr1_2:46766932-46766951 | None:intergenic | 60.0% | |
| CGGAGCCACATTGTGGTGAG+GGG | - | chr1_2:46768016-46768035 | None:intergenic | 60.0% | |
| GCGGAGCCACATTGTGGTGA+GGG | - | chr1_2:46768017-46768036 | None:intergenic | 60.0% | |
| GTTGCCAGGCCCTTGGATCA+GGG | + | chr1_2:46766925-46766944 | Msa0073290:CDS | 60.0% | |
| AACACCCTGATCCAAGGGCC+TGG | - | chr1_2:46766932-46766951 | None:intergenic | 60.0% | |
| CGGAGCCACATTGTGGTGAG+GGG | - | chr1_2:46768016-46768035 | None:intergenic | 60.0% | |
| GCGGAGCCACATTGTGGTGA+GGG | - | chr1_2:46768017-46768036 | None:intergenic | 60.0% | |
| TAGTGGCGTTGCCAGGCCCT+TGG | + | chr1_2:46766918-46766937 | Msa0073290:CDS | 65.0% | |
| CGTTGCCAGGCCCTTGGATC+AGG | + | chr1_2:46766924-46766943 | Msa0073290:CDS | 65.0% | |
| GGCGGAGCCACATTGTGGTG+AGG | - | chr1_2:46768018-46768037 | None:intergenic | 65.0% | |
| TAGTGGCGTTGCCAGGCCCT+TGG | + | chr1_2:46766918-46766937 | Msa0073290:CDS | 65.0% | |
| CGTTGCCAGGCCCTTGGATC+AGG | + | chr1_2:46766924-46766943 | Msa0073290:CDS | 65.0% | |
| GGCGGAGCCACATTGTGGTG+AGG | - | chr1_2:46768018-46768037 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 46766682 | 46768815 | 46766682 | ID=Msa0073290;Name=Msa0073290 |
| chr1_2 | mRNA | 46766682 | 46768815 | 46766682 | ID=Msa0073290-mRNA-1;Parent=Msa0073290;Name=Msa0073290-mRNA-1;_AED=0.05;_eAED=0.06;_QI=0|0|0|1|1|1|2|0|360 |
| chr1_2 | exon | 46766682 | 46766946 | 46766682 | ID=Msa0073290-mRNA-1:exon:14221;Parent=Msa0073290-mRNA-1 |
| chr1_2 | exon | 46767998 | 46768815 | 46767998 | ID=Msa0073290-mRNA-1:exon:14222;Parent=Msa0073290-mRNA-1 |
| chr1_2 | CDS | 46766682 | 46766946 | 46766682 | ID=Msa0073290-mRNA-1:cds;Parent=Msa0073290-mRNA-1 |
| chr1_2 | CDS | 46767998 | 46768815 | 46767998 | ID=Msa0073290-mRNA-1:cds;Parent=Msa0073290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
