Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0073790 | GAU51660.1 | 65.705 | 624 | 104 | 6 | 81 | 631 | 1 | 587 | 0.0 | 768 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0073790 | sp|Q9SZL8|FRS5_ARATH | 26.756 | 299 | 190 | 7 | 52 | 343 | 74 | 350 | 5.14e-24 | 111 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0073790 | A0A2Z6PJC0 | 65.705 | 624 | 104 | 6 | 81 | 631 | 1 | 587 | 0.0 | 768 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0073790 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0073790 | MtrunA17_Chr3g0088371 | 90.196 | 102 | 10 | 0 | 530 | 631 | 1 | 102 | 6.41e-58 | 194 |
| Msa0073790 | MtrunA17_Chr1g0172971 | 75.758 | 132 | 17 | 1 | 1 | 132 | 1 | 117 | 2.11e-55 | 198 |
| Msa0073790 | MtrunA17_Chr6g0475591 | 97.260 | 73 | 2 | 0 | 204 | 276 | 1 | 73 | 2.28e-43 | 150 |
| Msa0073790 | MtrunA17_Chr7g0258861 | 32.090 | 268 | 160 | 5 | 46 | 310 | 2 | 250 | 3.87e-38 | 144 |
| Msa0073790 | MtrunA17_Chr2g0324011 | 29.801 | 302 | 187 | 7 | 47 | 343 | 3 | 284 | 4.86e-32 | 131 |
| Msa0073790 | MtrunA17_Chr2g0324011 | 26.493 | 268 | 148 | 6 | 310 | 577 | 353 | 571 | 2.10e-20 | 95.9 |
| Msa0073790 | MtrunA17_Chr3g0082121 | 29.371 | 286 | 171 | 8 | 65 | 347 | 57 | 314 | 1.10e-25 | 112 |
| Msa0073790 | MtrunA17_Chr3g0082121 | 26.006 | 323 | 184 | 8 | 311 | 632 | 380 | 648 | 4.73e-24 | 107 |
| Msa0073790 | MtrunA17_Chr1g0202341 | 27.304 | 293 | 191 | 6 | 57 | 347 | 57 | 329 | 7.11e-25 | 110 |
| Msa0073790 | MtrunA17_Chr1g0202341 | 27.376 | 263 | 136 | 9 | 315 | 574 | 399 | 609 | 1.11e-16 | 84.3 |
| Msa0073790 | MtrunA17_Chr5g0448761 | 26.351 | 296 | 197 | 6 | 57 | 347 | 66 | 345 | 8.07e-25 | 110 |
| Msa0073790 | MtrunA17_Chr2g0296781 | 27.090 | 299 | 188 | 7 | 57 | 351 | 3 | 275 | 1.94e-24 | 108 |
| Msa0073790 | MtrunA17_Chr1g0203721 | 25.237 | 317 | 186 | 8 | 21 | 309 | 11 | 304 | 2.78e-22 | 102 |
| Msa0073790 | MtrunA17_Chr1g0203721 | 25.138 | 362 | 207 | 12 | 293 | 646 | 394 | 699 | 1.33e-18 | 90.5 |
| Msa0073790 | MtrunA17_Chr8g0363841 | 26.623 | 308 | 197 | 9 | 58 | 360 | 24 | 307 | 5.50e-22 | 100 |
| Msa0073790 | MtrunA17_Chr8g0363841 | 28.464 | 267 | 144 | 7 | 311 | 577 | 361 | 580 | 9.27e-19 | 90.9 |
| Msa0073790 | MtrunA17_Chr1g0164591 | 29.902 | 204 | 130 | 4 | 147 | 347 | 1 | 194 | 1.52e-21 | 96.3 |
| Msa0073790 | MtrunA17_Chr5g0441581 | 24.104 | 307 | 195 | 8 | 39 | 343 | 25 | 295 | 1.24e-18 | 90.5 |
| Msa0073790 | MtrunA17_Chr2g0287651 | 26.190 | 294 | 192 | 6 | 21 | 310 | 45 | 317 | 1.01e-17 | 87.8 |
| Msa0073790 | MtrunA17_Chr6g0477261 | 30.323 | 155 | 106 | 1 | 196 | 348 | 7 | 161 | 3.47e-17 | 85.9 |
| Msa0073790 | MtrunA17_Chr6g0477261 | 23.948 | 309 | 182 | 11 | 313 | 616 | 227 | 487 | 1.85e-15 | 80.1 |
| Msa0073790 | MtrunA17_Chr1g0207551 | 23.986 | 296 | 169 | 7 | 338 | 630 | 399 | 641 | 1.63e-16 | 84.0 |
| Msa0073790 | MtrunA17_Chr6g0458391 | 27.626 | 257 | 143 | 7 | 57 | 310 | 231 | 447 | 4.49e-16 | 82.4 |
| Msa0073790 | MtrunA17_Chr3g0080351 | 24.383 | 324 | 190 | 9 | 307 | 630 | 407 | 675 | 1.01e-15 | 81.3 |
| Msa0073790 | MtrunA17_Chr3g0118611 | 24.746 | 295 | 172 | 8 | 338 | 631 | 312 | 557 | 1.85e-15 | 80.5 |
| Msa0073790 | MtrunA17_Chr1g0196541 | 25.194 | 258 | 165 | 6 | 55 | 310 | 1 | 232 | 5.17e-15 | 79.0 |
| Msa0073790 | MtrunA17_Chr1g0203051 | 23.673 | 245 | 168 | 3 | 66 | 310 | 94 | 319 | 7.27e-14 | 75.1 |
| Msa0073790 | MtrunA17_Chr1g0198761 | 23.975 | 317 | 214 | 8 | 37 | 343 | 33 | 332 | 1.48e-13 | 74.3 |
| Msa0073790 | MtrunA17_Chr5g0431001 | 24.000 | 325 | 220 | 10 | 29 | 343 | 39 | 346 | 1.78e-13 | 73.6 |
| Msa0073790 | MtrunA17_Chr5g0440451 | 22.642 | 318 | 192 | 9 | 315 | 631 | 396 | 660 | 2.37e-13 | 73.9 |
| Msa0073790 | MtrunA17_Chr2g0291591 | 25.461 | 271 | 152 | 11 | 53 | 310 | 66 | 299 | 1.23e-12 | 70.9 |
| Msa0073790 | MtrunA17_Chr2g0329031 | 24.606 | 317 | 193 | 12 | 33 | 343 | 3 | 279 | 2.01e-12 | 70.5 |
| Msa0073790 | MtrunA17_Chr2g0290391 | 25.091 | 275 | 169 | 9 | 45 | 303 | 44 | 297 | 3.09e-12 | 70.1 |
| Msa0073790 | MtrunA17_Chr2g0276841 | 23.695 | 249 | 170 | 6 | 65 | 310 | 84 | 315 | 3.39e-12 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0073790 | AT4G38180.1 | 26.756 | 299 | 190 | 7 | 52 | 343 | 74 | 350 | 5.22e-25 | 111 |
| Msa0073790 | AT4G15090.1 | 25.234 | 321 | 182 | 8 | 311 | 630 | 398 | 661 | 1.91e-20 | 97.1 |
| Msa0073790 | AT4G15090.5 | 25.234 | 321 | 182 | 8 | 311 | 630 | 398 | 661 | 1.91e-20 | 97.1 |
| Msa0073790 | AT4G15090.3 | 25.234 | 321 | 182 | 8 | 311 | 630 | 398 | 661 | 1.91e-20 | 97.1 |
| Msa0073790 | AT4G15090.2 | 25.234 | 321 | 182 | 8 | 311 | 630 | 398 | 661 | 1.91e-20 | 97.1 |
| Msa0073790 | AT4G15090.4 | 25.234 | 321 | 182 | 8 | 311 | 630 | 398 | 661 | 1.91e-20 | 97.1 |
| Msa0073790 | AT5G28530.3 | 21.870 | 599 | 369 | 17 | 56 | 590 | 60 | 623 | 1.13e-18 | 90.9 |
| Msa0073790 | AT5G28530.2 | 21.870 | 599 | 369 | 17 | 56 | 590 | 60 | 623 | 1.13e-18 | 90.9 |
| Msa0073790 | AT5G28530.1 | 24.503 | 302 | 196 | 7 | 56 | 343 | 60 | 343 | 8.55e-15 | 78.6 |
| Msa0073790 | AT4G19990.5 | 36.082 | 97 | 52 | 2 | 505 | 601 | 497 | 583 | 1.43e-11 | 68.2 |
| Msa0073790 | AT4G19990.3 | 36.082 | 97 | 52 | 2 | 505 | 601 | 497 | 583 | 1.45e-11 | 68.2 |
| Msa0073790 | AT4G19990.4 | 36.082 | 97 | 52 | 2 | 505 | 601 | 497 | 583 | 1.45e-11 | 68.2 |
| Msa0073790 | AT4G19990.1 | 36.082 | 97 | 52 | 2 | 505 | 601 | 440 | 526 | 1.49e-11 | 68.2 |
| Msa0073790 | AT4G19990.7 | 36.082 | 97 | 52 | 2 | 505 | 601 | 511 | 597 | 1.50e-11 | 68.2 |
| Msa0073790 | AT4G19990.6 | 36.082 | 97 | 52 | 2 | 505 | 601 | 497 | 583 | 1.59e-11 | 68.2 |
| Msa0073790 | AT4G19990.2 | 36.082 | 97 | 52 | 2 | 505 | 601 | 497 | 583 | 1.59e-11 | 68.2 |
| Msa0073790 | AT1G10240.2 | 22.556 | 266 | 186 | 7 | 48 | 310 | 45 | 293 | 2.44e-11 | 67.4 |
| Msa0073790 | AT1G10240.1 | 22.556 | 266 | 186 | 7 | 48 | 310 | 45 | 293 | 2.44e-11 | 67.4 |
Find 88 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTAGTCATTTCAACATTA+TGG | 0.194287 | 1_2:-47668627 | Msa0073790:CDS |
| TTTCTGTAACTTGGTGCTTT+TGG | 0.264317 | 1_2:-47667749 | Msa0073790:CDS |
| TCTGATGTTGTCCTGTTGTT+AGG | 0.288908 | 1_2:+47670317 | None:intergenic |
| GGTAATTATGCATATAAAAC+TGG | 0.302948 | 1_2:-47670461 | Msa0073790:CDS |
| CGATCATGATCTTCAAAACT+TGG | 0.305304 | 1_2:+47668287 | None:intergenic |
| TTACTTCTCGAAATGATCTA+AGG | 0.311482 | 1_2:+47670126 | None:intergenic |
| CAACTAGATTATTCTCTATT+CGG | 0.323831 | 1_2:-47669810 | Msa0073790:CDS |
| GCCGATATTTATTGTTTGTT+CGG | 0.341758 | 1_2:+47669760 | None:intergenic |
| GAAGGCCTACTTCAGACTTT+AGG | 0.375686 | 1_2:-47668802 | Msa0073790:CDS |
| GAGGGATAATCATGCTGAAT+TGG | 0.376108 | 1_2:-47668594 | Msa0073790:CDS |
| AACAATAAATATCGGCCATT+AGG | 0.388497 | 1_2:-47669753 | Msa0073790:intron |
| ACCGAACAAACAATAAATAT+CGG | 0.389395 | 1_2:-47669761 | Msa0073790:CDS |
| TACACGTGTTTGTGCAGATT+CGG | 0.390328 | 1_2:-47667967 | Msa0073790:CDS |
| GAGAACGTCTTATGAAGTTA+TGG | 0.394356 | 1_2:-47670051 | Msa0073790:CDS |
| GTCATTTCAACATTATGGTT+CGG | 0.397091 | 1_2:-47668622 | Msa0073790:CDS |
| TCATGCTGAATTGGACTTCA+AGG | 0.399206 | 1_2:-47668585 | Msa0073790:CDS |
| TTCCTTCAAATACTATTATG+AGG | 0.399583 | 1_2:-47668453 | Msa0073790:CDS |
| ATGTGTATAAGATATATAGA+TGG | 0.407680 | 1_2:-47670196 | Msa0073790:CDS |
| CATGTCGTATGTTTGAGAAC+AGG | 0.415108 | 1_2:-47668211 | Msa0073790:CDS |
| GAAGTTATGGGTCAAGGAGT+TGG | 0.428685 | 1_2:-47670038 | Msa0073790:CDS |
| CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 1_2:-47670113 | Msa0073790:CDS |
| ACAAAATAAGAAATTTGATA+AGG | 0.431852 | 1_2:-47670399 | Msa0073790:CDS |
| GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 1_2:-47670248 | Msa0073790:CDS |
| CTACACGGTGTTCTTGAAGC+TGG | 0.449082 | 1_2:-47667927 | Msa0073790:CDS |
| AACCGCATCAGCTGACTGTT+AGG | 0.450316 | 1_2:+47668533 | None:intergenic |
| TATGCATTGGTCTTCAGCTT+GGG | 0.450920 | 1_2:-47668753 | Msa0073790:CDS |
| GTGATATCATTTCTGTAACT+TGG | 0.453435 | 1_2:-47667758 | Msa0073790:CDS |
| GCTCTTATAAATTCTAAAGC+TGG | 0.462891 | 1_2:-47670083 | Msa0073790:CDS |
| TCCATGATACTTTATTGCTA+GGG | 0.464004 | 1_2:+47670528 | None:intergenic |
| AGAACGTCTTATGAAGTTAT+GGG | 0.466325 | 1_2:-47670050 | Msa0073790:CDS |
| GTTTGCTTAATCCTAACAAC+AGG | 0.467124 | 1_2:-47670328 | Msa0073790:CDS |
| CGCTTTAAAACATATTGTCC+AGG | 0.471916 | 1_2:+47668110 | None:intergenic |
| TTGAAGATCTTGGAGTTCCT+AGG | 0.473596 | 1_2:-47668167 | Msa0073790:CDS |
| ATCATGATCGATTTGATGAA+AGG | 0.476999 | 1_2:-47668274 | Msa0073790:CDS |
| TACACGGTGTTCTTGAAGCT+GGG | 0.478647 | 1_2:-47667926 | Msa0073790:CDS |
| GTATGCATTGGTCTTCAGCT+TGG | 0.479582 | 1_2:-47668754 | Msa0073790:CDS |
| CTTGCTTTGCATTTATTCAC+AGG | 0.480587 | 1_2:-47668487 | Msa0073790:CDS |
| TTTAAGTCTGAAAACCGAAA+AGG | 0.483010 | 1_2:+47669999 | None:intergenic |
| CTCCTCATAATAGTATTTGA+AGG | 0.485089 | 1_2:+47668451 | None:intergenic |
| TTCCATGATACTTTATTGCT+AGG | 0.489989 | 1_2:+47670527 | None:intergenic |
| CGTTATGTTTGTAACAAACA+AGG | 0.494754 | 1_2:-47670365 | Msa0073790:CDS |
| ACATTATGGTTCGGAGAATG+AGG | 0.494807 | 1_2:-47668613 | Msa0073790:CDS |
| AGCTGGAATATCTTTGAAGC+TGG | 0.496270 | 1_2:-47670231 | Msa0073790:CDS |
| CCCCTAGCAATAAAGTATCA+TGG | 0.498381 | 1_2:-47670529 | Msa0073790:CDS |
| TATGAGGAGGACACGACAAA+AGG | 0.501557 | 1_2:-47668437 | Msa0073790:CDS |
| TGTCTTCTGCAGCATCAACT+TGG | 0.502977 | 1_2:+47669865 | None:intergenic |
| CTAAGGTAACATGAATGCTC+TGG | 0.504903 | 1_2:+47670143 | None:intergenic |
| TAACAAACAAGGTTTCAAGA+AGG | 0.511682 | 1_2:-47670354 | Msa0073790:CDS |
| TGCTTCTAAAACATCAACAT+TGG | 0.513630 | 1_2:+47668331 | None:intergenic |
| GAATGCTCTGGTTTATGTAA+TGG | 0.517705 | 1_2:+47670155 | None:intergenic |
| TTACAACCAACCCTTTCCTC+CGG | 0.518116 | 1_2:+47670254 | None:intergenic |
| AATAGAACAAGTGAATGGTC+TGG | 0.523171 | 1_2:+47668650 | None:intergenic |
| TGTGTATAAGATATATAGAT+GGG | 0.523615 | 1_2:-47670195 | Msa0073790:CDS |
| ATGAGGAGGACACGACAAAA+GGG | 0.528774 | 1_2:-47668436 | Msa0073790:CDS |
| CATAATAGTATTTGAAGGAA+AGG | 0.529686 | 1_2:+47668456 | None:intergenic |
| GAAGATTATATGAATGTGCT+AGG | 0.531971 | 1_2:+47667799 | None:intergenic |
| GGCCTACTTCAGACTTTAGG+TGG | 0.536366 | 1_2:-47668799 | Msa0073790:CDS |
| AACAAACAAGGTTTCAAGAA+GGG | 0.554561 | 1_2:-47670353 | Msa0073790:CDS |
| TTCACAAACTCAATAACCAA+TGG | 0.554620 | 1_2:+47670290 | None:intergenic |
| TAAAGAATAGAACAAGTGAA+TGG | 0.555459 | 1_2:+47668645 | None:intergenic |
| GGAGTAACATTGAGAACTAT+CGG | 0.556951 | 1_2:+47670550 | None:intergenic |
| CTTACGAAAATCGTATGCAT+TGG | 0.559732 | 1_2:-47668766 | Msa0073790:CDS |
| ATGTCGTATGTTTGAGAACA+GGG | 0.560861 | 1_2:-47668210 | Msa0073790:CDS |
| CCATGATACTTTATTGCTAG+GGG | 0.563054 | 1_2:+47670529 | None:intergenic |
| TTACTAATTCATGCTGAGAG+TGG | 0.566838 | 1_2:-47670608 | Msa0073790:CDS |
| GATCATGATCTTCAAAACTT+GGG | 0.567815 | 1_2:+47668288 | None:intergenic |
| CACGACAAAAGGGTCTGCGT+TGG | 0.568588 | 1_2:-47668426 | Msa0073790:CDS |
| GTCTTCAGTGCCAACATGGA+TGG | 0.576478 | 1_2:+47668043 | None:intergenic |
| GTTATGGGTCAAGGAGTTGG+AGG | 0.578191 | 1_2:-47670035 | Msa0073790:CDS |
| TCTAAAACATCAACATTGGA+AGG | 0.579248 | 1_2:+47668335 | None:intergenic |
| TCTTATGAAGTTATGGGTCA+AGG | 0.580120 | 1_2:-47670044 | Msa0073790:CDS |
| TGAATAAATGCAAAGCAAGC+TGG | 0.591761 | 1_2:+47668491 | None:intergenic |
| ATCCTAACAGTCAGCTGATG+CGG | 0.594920 | 1_2:-47668535 | Msa0073790:CDS |
| TATGATGATGCTGATAATGA+CGG | 0.599988 | 1_2:-47668359 | Msa0073790:CDS |
| TTGATATCGTTGTGCTTGAG+TGG | 0.601464 | 1_2:+47668019 | None:intergenic |
| GACAACATCAGACAGTCCAT+TGG | 0.604607 | 1_2:-47670306 | Msa0073790:CDS |
| CTTCAAATACTATTATGAGG+AGG | 0.607664 | 1_2:-47668450 | Msa0073790:CDS |
| CTGAAATCGACCATCCATGT+TGG | 0.607729 | 1_2:-47668053 | Msa0073790:CDS |
| ATATCAACTTCATCTGAGAG+TGG | 0.614980 | 1_2:-47670653 | Msa0073790:CDS |
| ACGTGTTTGTGCAGATTCGG+AGG | 0.616020 | 1_2:-47667964 | Msa0073790:CDS |
| ATGATGATGCTGATAATGAC+GGG | 0.620534 | 1_2:-47668358 | Msa0073790:CDS |
| CATTATGGTTCGGAGAATGA+GGG | 0.622642 | 1_2:-47668612 | Msa0073790:CDS |
| AGCCACCTAAAGTCTGAAGT+AGG | 0.632459 | 1_2:+47668797 | None:intergenic |
| GATATTGCACATGACCACCT+AGG | 0.647490 | 1_2:+47668150 | None:intergenic |
| TGGTGTCTTCAGTGCCAACA+TGG | 0.650133 | 1_2:+47668039 | None:intergenic |
| GATTTCAGCTTATCGACAGA+CGG | 0.652942 | 1_2:+47668068 | None:intergenic |
| TGTCGTATGTTTGAGAACAG+GGG | 0.653807 | 1_2:-47668209 | Msa0073790:CDS |
| AAGATCTTGGAGTTCCTAGG+TGG | 0.662062 | 1_2:-47668164 | Msa0073790:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAAATAAGAAATTTGATA+AGG | - | chr1_2:47668009-47668028 | Msa0073790:CDS | 15.0% |
| !!! | TGTTGTAATTTTTTTTTTTC+TGG | - | chr1_2:47668745-47668764 | Msa0073790:CDS | 15.0% |
| !!! | ATGATGAAAAATTGTTTTAA+TGG | - | chr1_2:47669584-47669603 | Msa0073790:intron | 15.0% |
| !!! | AAAGAGATTGAAGATTTTTA+TGG | - | chr1_2:47667926-47667945 | Msa0073790:CDS | 20.0% |
| !!! | ATAAAACTGGATTTTCTATT+AGG | - | chr1_2:47667960-47667979 | Msa0073790:CDS | 20.0% |
| !! | ATGTGTATAAGATATATAGA+TGG | - | chr1_2:47668212-47668231 | Msa0073790:CDS | 20.0% |
| !! | TGTGTATAAGATATATAGAT+GGG | - | chr1_2:47668213-47668232 | Msa0073790:CDS | 20.0% |
| !! | AAAAATAAACACTAACCTAA+TGG | + | chr1_2:47668673-47668692 | None:intergenic | 20.0% |
| !! | ACATACTTATTAGAATACTT+AGG | - | chr1_2:47669035-47669054 | Msa0073790:intron | 20.0% |
| !!! | AATCAGATTTTGACTATAAT+TGG | - | chr1_2:47669555-47669574 | Msa0073790:intron | 20.0% |
| !!! | ATCAGATTTTGACTATAATT+GGG | - | chr1_2:47669556-47669575 | Msa0073790:intron | 20.0% |
| !!! | TGAAAAATTGTTTTAATGGA+AGG | - | chr1_2:47669588-47669607 | Msa0073790:intron | 20.0% |
| !!! | CAAAGTTTTTACAATTGAAA+AGG | - | chr1_2:47670015-47670034 | Msa0073790:CDS | 20.0% |
| ! | GGTAATTATGCATATAAAAC+TGG | - | chr1_2:47667947-47667966 | Msa0073790:CDS | 25.0% |
| ! | TGGATATCATAGTAAAAAGA+TGG | + | chr1_2:47668526-47668545 | None:intergenic | 25.0% |
| !!! | AAGACATAGCTAGTATTTTT+TGG | - | chr1_2:47668560-47668579 | Msa0073790:CDS | 25.0% |
| !!! | AGACATAGCTAGTATTTTTT+GGG | - | chr1_2:47668561-47668580 | Msa0073790:CDS | 25.0% |
| ! | CAACTAGATTATTCTCTATT+CGG | - | chr1_2:47668598-47668617 | Msa0073790:CDS | 25.0% |
| ! | ACCGAACAAACAATAAATAT+CGG | - | chr1_2:47668647-47668666 | Msa0073790:CDS | 25.0% |
| !! | TTACTTTCATTAAGTTGTTC+TGG | - | chr1_2:47668720-47668739 | Msa0073790:CDS | 25.0% |
| ! | CAAACTTAAATGATGTTGAT+TGG | - | chr1_2:47668938-47668957 | Msa0073790:intron | 25.0% |
| !!! | ATTTATATTTTGAACTGCCT+AGG | - | chr1_2:47668962-47668981 | Msa0073790:intron | 25.0% |
| ! | ATACTAGCAATGACTAATTA+AGG | - | chr1_2:47669118-47669137 | Msa0073790:intron | 25.0% |
| ! | TACTAGCAATGACTAATTAA+GGG | - | chr1_2:47669119-47669138 | Msa0073790:intron | 25.0% |
| ! | ATGATTGTCAAAACCAATAA+AGG | + | chr1_2:47669248-47669267 | None:intergenic | 25.0% |
| !! | TTTTGATGAGGTAACTAATT+TGG | - | chr1_2:47669514-47669533 | Msa0073790:intron | 25.0% |
| ! | TAAAGAATAGAACAAGTGAA+TGG | + | chr1_2:47669766-47669785 | None:intergenic | 25.0% |
| ! | CTTTAGTCATTTCAACATTA+TGG | - | chr1_2:47669781-47669800 | Msa0073790:CDS | 25.0% |
| ! | CATAATAGTATTTGAAGGAA+AGG | + | chr1_2:47669955-47669974 | None:intergenic | 25.0% |
| ! | TTCCTTCAAATACTATTATG+AGG | - | chr1_2:47669955-47669974 | Msa0073790:CDS | 25.0% |
| !!! | ATTATGTTTTTGCTTGATGT+TGG | + | chr1_2:47670520-47670539 | None:intergenic | 25.0% |
| TCCATGATACTTTATTGCTA+GGG | + | chr1_2:47667883-47667902 | None:intergenic | 30.0% | |
| TTCCATGATACTTTATTGCT+AGG | + | chr1_2:47667884-47667903 | None:intergenic | 30.0% | |
| CGTTATGTTTGTAACAAACA+AGG | - | chr1_2:47668043-47668062 | Msa0073790:CDS | 30.0% | |
| TAACAAACAAGGTTTCAAGA+AGG | - | chr1_2:47668054-47668073 | Msa0073790:CDS | 30.0% | |
| AACAAACAAGGTTTCAAGAA+GGG | - | chr1_2:47668055-47668074 | Msa0073790:CDS | 30.0% | |
| TTCACAAACTCAATAACCAA+TGG | + | chr1_2:47668121-47668140 | None:intergenic | 30.0% | |
| TGTGAAAGTGAAAGAAAAAC+CGG | - | chr1_2:47668135-47668154 | Msa0073790:CDS | 30.0% | |
| TTACTTCTCGAAATGATCTA+AGG | + | chr1_2:47668285-47668304 | None:intergenic | 30.0% | |
| !! | GCTCTTATAAATTCTAAAGC+TGG | - | chr1_2:47668325-47668344 | Msa0073790:CDS | 30.0% |
| AGAACGTCTTATGAAGTTAT+GGG | - | chr1_2:47668358-47668377 | Msa0073790:CDS | 30.0% | |
| TTTAAGTCTGAAAACCGAAA+AGG | + | chr1_2:47668412-47668431 | None:intergenic | 30.0% | |
| GCCGATATTTATTGTTTGTT+CGG | + | chr1_2:47668651-47668670 | None:intergenic | 30.0% | |
| AACAATAAATATCGGCCATT+AGG | - | chr1_2:47668655-47668674 | Msa0073790:CDS | 30.0% | |
| AGTTCCTACTTGTTTGTTTA+GGG | - | chr1_2:47668839-47668858 | Msa0073790:CDS | 30.0% | |
| AAATCCCTAAACAAACAAGT+AGG | + | chr1_2:47668846-47668865 | None:intergenic | 30.0% | |
| TTGTCTAAGTAAAAATGCCT+AGG | + | chr1_2:47668982-47669001 | None:intergenic | 30.0% | |
| TAAATTTCAGCTGCCTTTAT+TGG | - | chr1_2:47669232-47669251 | Msa0073790:intron | 30.0% | |
| !!! | CATCGTAAGAGTGTTTTATT+TGG | - | chr1_2:47669265-47669284 | Msa0073790:intron | 30.0% |
| AAAACACCTGGAAAACTATT+CGG | + | chr1_2:47669421-47669440 | None:intergenic | 30.0% | |
| !!! | TTTTTCATGGGCTTTGTTTA+TGG | - | chr1_2:47669437-47669456 | Msa0073790:intron | 30.0% |
| !!! | AACAGTGCATTTTTTTGATG+AGG | - | chr1_2:47669502-47669521 | Msa0073790:intron | 30.0% |
| ! | CATACGATTTTCGTAAGTTT+GGG | + | chr1_2:47669639-47669658 | None:intergenic | 30.0% |
| ! | TCTTTCAATGCTTTTCTTTG+TGG | - | chr1_2:47669725-47669744 | Msa0073790:intron | 30.0% |
| GTCATTTCAACATTATGGTT+CGG | - | chr1_2:47669786-47669805 | Msa0073790:CDS | 30.0% | |
| CTCCTCATAATAGTATTTGA+AGG | + | chr1_2:47669960-47669979 | None:intergenic | 30.0% | |
| CTTCAAATACTATTATGAGG+AGG | - | chr1_2:47669958-47669977 | Msa0073790:CDS | 30.0% | |
| ! | TATGATGATGCTGATAATGA+CGG | - | chr1_2:47670049-47670068 | Msa0073790:CDS | 30.0% |
| ! | TCTAAAACATCAACATTGGA+AGG | + | chr1_2:47670076-47670095 | None:intergenic | 30.0% |
| !! | TGCTTCTAAAACATCAACAT+TGG | + | chr1_2:47670080-47670099 | None:intergenic | 30.0% |
| GATCATGATCTTCAAAACTT+GGG | + | chr1_2:47670123-47670142 | None:intergenic | 30.0% | |
| !! | ATCATGATCGATTTGATGAA+AGG | - | chr1_2:47670134-47670153 | Msa0073790:CDS | 30.0% |
| !!! | CATTTTTTGAAGACAATACC+TGG | - | chr1_2:47670280-47670299 | Msa0073790:CDS | 30.0% |
| !!! | GACAATATGTTTTAAAGCGT+TGG | - | chr1_2:47670302-47670321 | Msa0073790:CDS | 30.0% |
| !!! | GCATCTGAATTTTTTCTACA+CGG | - | chr1_2:47670466-47670485 | Msa0073790:CDS | 30.0% |
| GAAGATTATATGAATGTGCT+AGG | + | chr1_2:47670612-47670631 | None:intergenic | 30.0% | |
| GTGATATCATTTCTGTAACT+TGG | - | chr1_2:47670650-47670669 | Msa0073790:CDS | 30.0% | |
| ATATCAACTTCATCTGAGAG+TGG | - | chr1_2:47667755-47667774 | Msa0073790:CDS | 35.0% | |
| TTACTAATTCATGCTGAGAG+TGG | - | chr1_2:47667800-47667819 | Msa0073790:CDS | 35.0% | |
| GGAGTAACATTGAGAACTAT+CGG | + | chr1_2:47667861-47667880 | None:intergenic | 35.0% | |
| CCATGATACTTTATTGCTAG+GGG | + | chr1_2:47667882-47667901 | None:intergenic | 35.0% | |
| GTTTGCTTAATCCTAACAAC+AGG | - | chr1_2:47668080-47668099 | Msa0073790:CDS | 35.0% | |
| ! | GAATGCTCTGGTTTATGTAA+TGG | + | chr1_2:47668256-47668275 | None:intergenic | 35.0% |
| CGAGAAGTAAATGAAGTTCA+AGG | - | chr1_2:47668295-47668314 | Msa0073790:CDS | 35.0% | |
| GAGAACGTCTTATGAAGTTA+TGG | - | chr1_2:47668357-47668376 | Msa0073790:CDS | 35.0% | |
| TCTTATGAAGTTATGGGTCA+AGG | - | chr1_2:47668364-47668383 | Msa0073790:CDS | 35.0% | |
| GACAATTCGTCAAAAAGAGA+TGG | - | chr1_2:47668444-47668463 | Msa0073790:CDS | 35.0% | |
| AATTCGTCAAAAAGAGATGG+TGG | - | chr1_2:47668447-47668466 | Msa0073790:CDS | 35.0% | |
| !!! | GGCATGTTGTTTTTTTGTTC+TGG | - | chr1_2:47668766-47668785 | Msa0073790:CDS | 35.0% |
| CTGGCATGTGTATTATAAGT+AGG | - | chr1_2:47668785-47668804 | Msa0073790:CDS | 35.0% | |
| TAGGAACTGTAGTAAATCCT+AGG | + | chr1_2:47668827-47668846 | None:intergenic | 35.0% | |
| CAGTTCCTACTTGTTTGTTT+AGG | - | chr1_2:47668838-47668857 | Msa0073790:CDS | 35.0% | |
| AAAAACCCCATGAAACCAAA+TGG | + | chr1_2:47668880-47668899 | None:intergenic | 35.0% | |
| !! | CATCTTTCAGGTTTGATATC+TGG | + | chr1_2:47668910-47668929 | None:intergenic | 35.0% |
| CAGATATCAAACCTGAAAGA+TGG | - | chr1_2:47668908-47668927 | Msa0073790:intron | 35.0% | |
| TTTGTCTCAAACCATCTTTC+AGG | + | chr1_2:47668922-47668941 | None:intergenic | 35.0% | |
| GATCACACAAGACAATTTCA+GGG | + | chr1_2:47669005-47669024 | None:intergenic | 35.0% | |
| ATTGAGTTTACACATTGCTG+AGG | - | chr1_2:47669069-47669088 | Msa0073790:intron | 35.0% | |
| AGCAATGACTAATTAAGGGT+TGG | - | chr1_2:47669123-47669142 | Msa0073790:intron | 35.0% | |
| TGACTAATTAAGGGTTGGAT+TGG | - | chr1_2:47669128-47669147 | Msa0073790:intron | 35.0% | |
| !!! | AGATAGCAGCTACTTTTGAT+TGG | - | chr1_2:47669308-47669327 | Msa0073790:intron | 35.0% |
| AATCGTCTGTGGTTTCTTAT+TGG | + | chr1_2:47669362-47669381 | None:intergenic | 35.0% | |
| ! | TCAATTCCGAATAGTTTTCC+AGG | - | chr1_2:47669412-47669431 | Msa0073790:intron | 35.0% |
| ! | AGTTTTCCAGGTGTTTTTCA+TGG | - | chr1_2:47669424-47669443 | Msa0073790:intron | 35.0% |
| ! | GTTTTCCAGGTGTTTTTCAT+GGG | - | chr1_2:47669425-47669444 | Msa0073790:intron | 35.0% |
| GAGAATGCAAAGAAAAAGCT+TGG | - | chr1_2:47669469-47669488 | Msa0073790:intron | 35.0% | |
| ! | GCATACGATTTTCGTAAGTT+TGG | + | chr1_2:47669640-47669659 | None:intergenic | 35.0% |
| CTTACGAAAATCGTATGCAT+TGG | - | chr1_2:47669642-47669661 | Msa0073790:intron | 35.0% | |
| ! | GTCAAGTCATATTTTACAGC+TGG | - | chr1_2:47669677-47669696 | Msa0073790:intron | 35.0% |
| AATAGAACAAGTGAATGGTC+TGG | + | chr1_2:47669761-47669780 | None:intergenic | 35.0% | |
| TGAATAAATGCAAAGCAAGC+TGG | + | chr1_2:47669920-47669939 | None:intergenic | 35.0% | |
| CTTGCTTTGCATTTATTCAC+AGG | - | chr1_2:47669921-47669940 | Msa0073790:CDS | 35.0% | |
| ! | ATGATGATGCTGATAATGAC+GGG | - | chr1_2:47670050-47670069 | Msa0073790:CDS | 35.0% |
| CGATCATGATCTTCAAAACT+TGG | + | chr1_2:47670124-47670143 | None:intergenic | 35.0% | |
| ATGTCGTATGTTTGAGAACA+GGG | - | chr1_2:47670198-47670217 | Msa0073790:CDS | 35.0% | |
| !!! | TCGACATGTTTTGAAGATCT+TGG | - | chr1_2:47670231-47670250 | Msa0073790:CDS | 35.0% |
| !! | CGCTTTAAAACATATTGTCC+AGG | + | chr1_2:47670301-47670320 | None:intergenic | 35.0% |
| !!! | TTTCTGTAACTTGGTGCTTT+TGG | - | chr1_2:47670659-47670678 | Msa0073790:CDS | 35.0% |
| ! | CCCCTAGCAATAAAGTATCA+TGG | - | chr1_2:47667879-47667898 | Msa0073790:CDS | 40.0% |
| TCTGATGTTGTCCTGTTGTT+AGG | + | chr1_2:47668094-47668113 | None:intergenic | 40.0% | |
| GAAAGTGAAAGAAAAACCGG+AGG | - | chr1_2:47668138-47668157 | Msa0073790:CDS | 40.0% | |
| TGAAAGAAAAACCGGAGGAA+AGG | - | chr1_2:47668143-47668162 | Msa0073790:CDS | 40.0% | |
| GAAAGAAAAACCGGAGGAAA+GGG | - | chr1_2:47668144-47668163 | Msa0073790:CDS | 40.0% | |
| !! | AGCTGGAATATCTTTGAAGC+TGG | - | chr1_2:47668177-47668196 | Msa0073790:CDS | 40.0% |
| CTAAGGTAACATGAATGCTC+TGG | + | chr1_2:47668268-47668287 | None:intergenic | 40.0% | |
| ! | GCACGAAGAATCTTCCTTTT+CGG | - | chr1_2:47668395-47668414 | Msa0073790:CDS | 40.0% |
| !!! | GCTAGTATTTTTTGGGCAGA+TGG | - | chr1_2:47668568-47668587 | Msa0073790:CDS | 40.0% |
| ! | GAGTACATTTTGAACTGCCT+AGG | - | chr1_2:47668807-47668826 | Msa0073790:CDS | 40.0% |
| ! | ATTTTCTCGCTTCTGCCATT+TGG | - | chr1_2:47668862-47668881 | Msa0073790:CDS | 40.0% |
| ! | CTTCTGCCATTTGGTTTCAT+GGG | - | chr1_2:47668871-47668890 | Msa0073790:intron | 40.0% |
| ! | TTCTGCCATTTGGTTTCATG+GGG | - | chr1_2:47668872-47668891 | Msa0073790:intron | 40.0% |
| CGATCACACAAGACAATTTC+AGG | + | chr1_2:47669006-47669025 | None:intergenic | 40.0% | |
| TGGTCTGTATAAATCGTCTG+TGG | + | chr1_2:47669373-47669392 | None:intergenic | 40.0% | |
| ACAGACGATTTATACAGACC+AGG | - | chr1_2:47669372-47669391 | Msa0073790:intron | 40.0% | |
| !! | TATGCATTGGTCTTCAGCTT+GGG | - | chr1_2:47669655-47669674 | Msa0073790:intron | 40.0% |
| ! | ACATTATGGTTCGGAGAATG+AGG | - | chr1_2:47669795-47669814 | Msa0073790:CDS | 40.0% |
| ! | CATTATGGTTCGGAGAATGA+GGG | - | chr1_2:47669796-47669815 | Msa0073790:CDS | 40.0% |
| GAGGGATAATCATGCTGAAT+TGG | - | chr1_2:47669814-47669833 | Msa0073790:CDS | 40.0% | |
| TCATGCTGAATTGGACTTCA+AGG | - | chr1_2:47669823-47669842 | Msa0073790:CDS | 40.0% | |
| CATGTCGTATGTTTGAGAAC+AGG | - | chr1_2:47670197-47670216 | Msa0073790:CDS | 40.0% | |
| TGTCGTATGTTTGAGAACAG+GGG | - | chr1_2:47670199-47670218 | Msa0073790:CDS | 40.0% | |
| TTGAAGATCTTGGAGTTCCT+AGG | - | chr1_2:47670241-47670260 | Msa0073790:CDS | 40.0% | |
| GATTTCAGCTTATCGACAGA+CGG | + | chr1_2:47670343-47670362 | None:intergenic | 40.0% | |
| TTGATATCGTTGTGCTTGAG+TGG | + | chr1_2:47670392-47670411 | None:intergenic | 40.0% | |
| TACACGTGTTTGTGCAGATT+CGG | - | chr1_2:47670441-47670460 | Msa0073790:CDS | 40.0% | |
| GACAACATCAGACAGTCCAT+TGG | - | chr1_2:47668102-47668121 | Msa0073790:CDS | 45.0% | |
| TTACAACCAACCCTTTCCTC+CGG | + | chr1_2:47668157-47668176 | None:intergenic | 45.0% | |
| !! | GAAAGGGTTGGTTGTAAAGC+TGG | - | chr1_2:47668160-47668179 | Msa0073790:CDS | 45.0% |
| GAAGTTATGGGTCAAGGAGT+TGG | - | chr1_2:47668370-47668389 | Msa0073790:CDS | 45.0% | |
| ! | CGTCAAAAAGAGATGGTGGT+TGG | - | chr1_2:47668451-47668470 | Msa0073790:CDS | 45.0% |
| TGTCTTCTGCAGCATCAACT+TGG | + | chr1_2:47668546-47668565 | None:intergenic | 45.0% | |
| ! | GCTTCTGCCATTTGGTTTCA+TGG | - | chr1_2:47668870-47668889 | Msa0073790:intron | 45.0% |
| AACACAATAACGCACTAGCC+TGG | + | chr1_2:47669393-47669412 | None:intergenic | 45.0% | |
| CAAAGCCCATGAAAAACACC+TGG | + | chr1_2:47669433-47669452 | None:intergenic | 45.0% | |
| !! | TGGGCTTTGTTTATGGCACA+TGG | - | chr1_2:47669444-47669463 | Msa0073790:intron | 45.0% |
| GAAGGCCTACTTCAGACTTT+AGG | - | chr1_2:47669606-47669625 | Msa0073790:intron | 45.0% | |
| ! | AGCCACCTAAAGTCTGAAGT+AGG | + | chr1_2:47669614-47669633 | None:intergenic | 45.0% |
| !! | GTATGCATTGGTCTTCAGCT+TGG | - | chr1_2:47669654-47669673 | Msa0073790:intron | 45.0% |
| ATCCTAACAGTCAGCTGATG+CGG | - | chr1_2:47669873-47669892 | Msa0073790:CDS | 45.0% | |
| TATGAGGAGGACACGACAAA+AGG | - | chr1_2:47669971-47669990 | Msa0073790:CDS | 45.0% | |
| ATGAGGAGGACACGACAAAA+GGG | - | chr1_2:47669972-47669991 | Msa0073790:CDS | 45.0% | |
| AAGATCTTGGAGTTCCTAGG+TGG | - | chr1_2:47670244-47670263 | Msa0073790:CDS | 45.0% | |
| GATATTGCACATGACCACCT+AGG | + | chr1_2:47670261-47670280 | None:intergenic | 45.0% | |
| CTGAAATCGACCATCCATGT+TGG | - | chr1_2:47670355-47670374 | Msa0073790:CDS | 45.0% | |
| TACACGGTGTTCTTGAAGCT+GGG | - | chr1_2:47670482-47670501 | Msa0073790:CDS | 45.0% | |
| GAAAAACCGGAGGAAAGGGT+TGG | - | chr1_2:47668148-47668167 | Msa0073790:CDS | 50.0% | |
| GTTATGGGTCAAGGAGTTGG+AGG | - | chr1_2:47668373-47668392 | Msa0073790:CDS | 50.0% | |
| GGCCTACTTCAGACTTTAGG+TGG | - | chr1_2:47669609-47669628 | Msa0073790:intron | 50.0% | |
| AACCGCATCAGCTGACTGTT+AGG | + | chr1_2:47669878-47669897 | None:intergenic | 50.0% | |
| GTCTTCAGTGCCAACATGGA+TGG | + | chr1_2:47670368-47670387 | None:intergenic | 50.0% | |
| TGGTGTCTTCAGTGCCAACA+TGG | + | chr1_2:47670372-47670391 | None:intergenic | 50.0% | |
| ACGTGTTTGTGCAGATTCGG+AGG | - | chr1_2:47670444-47670463 | Msa0073790:CDS | 50.0% | |
| CTACACGGTGTTCTTGAAGC+TGG | - | chr1_2:47670481-47670500 | Msa0073790:CDS | 50.0% | |
| CACGACAAAAGGGTCTGCGT+TGG | - | chr1_2:47669982-47670001 | Msa0073790:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 47667746 | 47670684 | 47667746 | ID=Msa0073790;Name=Msa0073790 |
| chr1_2 | mRNA | 47667746 | 47670684 | 47667746 | ID=Msa0073790-mRNA-1;Parent=Msa0073790;Name=Msa0073790-mRNA-1;_AED=0.04;_eAED=0.05;_QI=0|0|0|1|1|1|2|0|688 |
| chr1_2 | exon | 47669754 | 47670684 | 47669754 | ID=Msa0073790-mRNA-1:exon:14529;Parent=Msa0073790-mRNA-1 |
| chr1_2 | exon | 47667746 | 47668881 | 47667746 | ID=Msa0073790-mRNA-1:exon:14528;Parent=Msa0073790-mRNA-1 |
| chr1_2 | CDS | 47669754 | 47670684 | 47669754 | ID=Msa0073790-mRNA-1:cds;Parent=Msa0073790-mRNA-1 |
| chr1_2 | CDS | 47667746 | 47668881 | 47667746 | ID=Msa0073790-mRNA-1:cds;Parent=Msa0073790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
