AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0074130

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0074130 MtrunA17_Chr1g0181781 99.446 361 1 1 1 360 1 361 0.0 731
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0074130 AT2G20280.1 72.776 371 88 6 1 360 1 369 5.74e-160 453

Find 121 sgRNAs with CRISPR-Local

Find 369 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGCTCCTGGCTCCTTAATT+TGG 0.131430 1_2:-48337630 None:intergenic
TCGAGAAGCTTACGGAAATT+TGG 0.212504 1_2:-48332985 None:intergenic
AGGTTATTCTTGGGAGTTTC+CGG 0.221050 1_2:+48338071 Msa0074130:three_prime_UTR
TTCAACAACCTTCTGCTTCT+TGG 0.227516 1_2:-48333218 None:intergenic
TTAGATTAGGGTTTGTGTTT+TGG 0.233492 1_2:-48333010 None:intergenic
ATCTTGTTTGGGATCGGTTC+TGG 0.237299 1_2:-48333323 None:intergenic
TAATACCTTTGCATCTTGTT+TGG 0.261505 1_2:-48333335 None:intergenic
TGCCTGTTGGGCAGCCAAAC+TGG 0.270781 1_2:-48335188 None:intergenic
GCCAGTGTTTGGGTTAGATT+AGG 0.279832 1_2:-48333023 None:intergenic
CTTAATTTGGATTGATGTCT+TGG 0.282985 1_2:-48337617 None:intergenic
GCCACCTGTTGCTGAGGTGC+TGG 0.286551 1_2:-48337509 None:intergenic
CAAGACATCAATCCAAATTA+AGG 0.287429 1_2:+48337618 Msa0074130:CDS
CATTAGGTTCTGGTTCTCTT+TGG 0.299666 1_2:-48335509 None:intergenic
CCAGTGTTTGGGTTAGATTA+GGG 0.305397 1_2:-48333022 None:intergenic
GGAAGCAATATGGTTGGTTT+TGG 0.321181 1_2:+48334864 Msa0074130:CDS
TTAGGGAGCTAGGTTATTCT+TGG 0.321284 1_2:+48338061 Msa0074130:three_prime_UTR
CCAAATGAAGGCTTTGTTAG+AGG 0.323021 1_2:+48334955 Msa0074130:CDS
CCTCTAACAAAGCCTTCATT+TGG 0.329335 1_2:-48334955 None:intergenic
AATACCTTTGCATCTTGTTT+GGG 0.345954 1_2:-48333334 None:intergenic
TGTTCAGTTTCATTAGGTTC+TGG 0.346108 1_2:-48335519 None:intergenic
ACATTCTGTTCAGTTTCATT+AGG 0.355174 1_2:-48335525 None:intergenic
TAAAACAACTCAGTAGTTAT+AGG 0.363557 1_2:-48335130 None:intergenic
ACTATTTGCAACATTGCATT+TGG 0.364261 1_2:+48337795 Msa0074130:three_prime_UTR
GTGTACCTGGTGCCAGTGTT+TGG 0.365398 1_2:-48333034 None:intergenic
ATACAATTCTTACCACCATT+TGG 0.368919 1_2:-48334893 None:intergenic
GTGTGATTGAAGGGGTATAT+CGG 0.370307 1_2:+48332957 Msa0074130:five_prime_UTR
TGCCAGTTTGGCTGCCCAAC+AGG 0.370933 1_2:+48335186 Msa0074130:CDS
TGCAACTTATATATGTCCTT+AGG 0.373786 1_2:+48338043 Msa0074130:three_prime_UTR
CTTAGCCCTCTCTGCCTGTT+GGG 0.378571 1_2:-48335200 None:intergenic
TGATTACCAGGTGGGACTTT+AGG 0.387712 1_2:-48334023 None:intergenic
ACTGGGAGTGCTGCTAATAA+TGG 0.388945 1_2:+48337484 Msa0074130:CDS
TGTATTCATCTTCAGGGGAC+TGG 0.391678 1_2:+48337466 Msa0074130:intron
GTCCAATGCTAGCTTGTTTG+TGG 0.394012 1_2:+48335461 Msa0074130:CDS
TGACGACGACGATGATGAAT+TGG 0.394183 1_2:+48337558 Msa0074130:CDS
TGTACCTGGTGCCAGTGTTT+GGG 0.397179 1_2:-48333033 None:intergenic
GTATTCATCTTCAGGGGACT+GGG 0.399295 1_2:+48337467 Msa0074130:intron
CAGGATTAAGCTTCAGCTCC+TGG 0.399587 1_2:-48337643 None:intergenic
TCTTGTTTGGGATCGGTTCT+GGG 0.408315 1_2:-48333322 None:intergenic
TTTACTTTCGTATGAGAGAA+TGG 0.411700 1_2:-48338146 None:intergenic
CTCTAACAAAGCCTTCATTT+GGG 0.418201 1_2:-48334954 None:intergenic
TCTTAGCCCTCTCTGCCTGT+TGG 0.422157 1_2:-48335201 None:intergenic
TTCTCTCATACGAAAGTAAA+GGG 0.423675 1_2:+48338149 Msa0074130:three_prime_UTR
GGACGAGAGAGATGCCAGTT+TGG 0.425678 1_2:+48335174 Msa0074130:CDS
GTTGTTGAAGACAAAACTTT+CGG 0.429860 1_2:+48333232 Msa0074130:CDS
CACTGCTAAGTGTTGTGTTA+TGG 0.431615 1_2:+48338016 Msa0074130:three_prime_UTR
TAGGGAGCTAGGTTATTCTT+GGG 0.438941 1_2:+48338062 Msa0074130:three_prime_UTR
ATTTGAATGTTCAGAGGAAA+GGG 0.439404 1_2:+48334405 Msa0074130:CDS
CCACCTGTTGCTGAGGTGCT+GGG 0.445150 1_2:-48337508 None:intergenic
GGTCCCAGCACCTCAGCAAC+AGG 0.448016 1_2:+48337505 Msa0074130:CDS
CTTTGCATCTTGTTTGGGAT+CGG 0.453264 1_2:-48333329 None:intergenic
GCAACTTATATATGTCCTTA+GGG 0.464088 1_2:+48338044 Msa0074130:three_prime_UTR
ATCGTCGTCGTCAATGTCAT+CGG 0.466901 1_2:-48337548 None:intergenic
CAAGGTTGAGAATACTTCTC+AGG 0.468658 1_2:-48337662 None:intergenic
CGACGATGATGAATTGGACT+TGG 0.483319 1_2:+48337564 Msa0074130:CDS
ATATATGTCCTTAGGGAGCT+AGG 0.484270 1_2:+48338051 Msa0074130:three_prime_UTR
GGGATCGGTTCTGGGTTGAA+CGG 0.484565 1_2:-48333314 None:intergenic
ACTGGCATTCCTTGCATTCG+AGG 0.486440 1_2:+48337735 Msa0074130:three_prime_UTR
ATTCTCTCATACGAAAGTAA+AGG 0.488934 1_2:+48338148 Msa0074130:three_prime_UTR
AGTGATTTCATTATCATCAA+AGG 0.492899 1_2:-48337775 None:intergenic
TATCATTTGCTTCTAGCCAC+TGG 0.496124 1_2:+48337717 Msa0074130:three_prime_UTR
CTTGGACGAGTTGAATGAAC+TGG 0.496577 1_2:+48337582 Msa0074130:CDS
TAAAGTGGGTCAGTGTGCTA+AGG 0.499067 1_2:+48334358 Msa0074130:CDS
TGTGATTGAAGGGGTATATC+GGG 0.499449 1_2:+48332958 Msa0074130:five_prime_UTR
AAACTCACATAATACGGACT+TGG 0.510404 1_2:-48334333 None:intergenic
GGGCTAAGAATGACCGTATG+AGG 0.510546 1_2:+48335215 Msa0074130:CDS
TTGAATTGAATCAATTACTA+CGG 0.513438 1_2:+48333119 Msa0074130:five_prime_UTR
GCGGTAGAGAGGAAGCAATA+TGG 0.516289 1_2:+48334854 Msa0074130:CDS
AACTCACATAATACGGACTT+GGG 0.517197 1_2:-48334332 None:intergenic
AAAGTGGGTCAGTGTGCTAA+GGG 0.517849 1_2:+48334359 Msa0074130:CDS
TGTTCTAAAATCCCAAATGA+AGG 0.519608 1_2:+48334943 Msa0074130:CDS
ATAAATCATACAATATCTGT+TGG 0.520423 1_2:-48334628 None:intergenic
TCGTCGTCGTCAATGTCATC+GGG 0.524494 1_2:-48337547 None:intergenic
GGCTGCCCAACAGGCAGAGA+GGG 0.524561 1_2:+48335195 Msa0074130:CDS
GATTTGAATGTTCAGAGGAA+AGG 0.525852 1_2:+48334404 Msa0074130:CDS
TCAAGAGACATTGGAGAAAG+TGG 0.526557 1_2:+48334570 Msa0074130:CDS
CTCATGATTTGAATGTTCAG+AGG 0.535502 1_2:+48334399 Msa0074130:CDS
TCAATCCAAATTAAGGAGCC+AGG 0.536632 1_2:+48337625 Msa0074130:CDS
AAGAATAACCTAGCTCCCTA+AGG 0.537442 1_2:-48338059 None:intergenic
GATAATGAACATACCTCATA+CGG 0.540126 1_2:-48335228 None:intergenic
ATGAAGTGGAAAGCAATATG+TGG 0.540264 1_2:+48338104 Msa0074130:three_prime_UTR
GTCAGATACAATGGAAGAGT+GGG 0.540786 1_2:+48334546 Msa0074130:intron
TATAGACATGCACTTCCACC+TGG 0.544388 1_2:+48334917 Msa0074130:CDS
GCTTCGGAGGCATCTCGTAT+CGG 0.548418 1_2:-48333177 None:intergenic
TGAGGAGGAGATCGAAAAGC+AGG 0.549446 1_2:+48335000 Msa0074130:CDS
ATCCACAAACAAGCTAGCAT+TGG 0.551369 1_2:-48335463 None:intergenic
GGAAGAGAAGGCAAAAGAGA+AGG 0.553385 1_2:+48333965 Msa0074130:CDS
ATCTGATAAAATGCCAATTG+AGG 0.553676 1_2:+48334982 Msa0074130:CDS
ATCATTAAACTATCACATCA+AGG 0.560577 1_2:-48337680 None:intergenic
TCTGTAGTTAGGTCCCTCAT+CGG 0.561365 1_2:+48337851 Msa0074130:three_prime_UTR
GTCTGCGCCACCTGTTGCTG+AGG 0.561741 1_2:-48337515 None:intergenic
GTGACGTGCAGTGTGATTGA+AGG 0.567133 1_2:+48332947 None:intergenic
AAAATGTCCATCACAGTCAC+AGG 0.569630 1_2:-48337875 None:intergenic
CATCGGACCTGTGACTGTGA+TGG 0.575918 1_2:+48337868 Msa0074130:three_prime_UTR
AGAGTGGGATCAAGAGACAT+TGG 0.578286 1_2:+48334561 Msa0074130:CDS
AAGCAGCCTTTGCGAAGTAG+AGG 0.578528 1_2:-48337957 None:intergenic
CCCTAATCTAACCCAAACAC+TGG 0.579001 1_2:+48333022 Msa0074130:five_prime_UTR
ATCGGTTCTGGGTTGAACGG+AGG 0.580401 1_2:-48333311 None:intergenic
AACACAACACTTAGCAGTGG+TGG 0.585338 1_2:-48338012 None:intergenic
TGAAGTGGAAAGCAATATGT+GGG 0.589339 1_2:+48338105 Msa0074130:three_prime_UTR
CCGGTTGAAAGAAAATGAAG+TGG 0.589541 1_2:+48338090 Msa0074130:three_prime_UTR
CTAACCCAAACACTGGCACC+AGG 0.591263 1_2:+48333029 Msa0074130:five_prime_UTR
GAGTTTCCTCTACTTCGCAA+AGG 0.593616 1_2:+48337951 Msa0074130:three_prime_UTR
TGTCAGATACAATGGAAGAG+TGG 0.594832 1_2:+48334545 Msa0074130:intron
TCTTATGTTGTCAGATACAA+TGG 0.596224 1_2:+48334537 Msa0074130:intron
TAGAGAGGAAGCAATATGGT+TGG 0.597838 1_2:+48334858 Msa0074130:CDS
CCCAGCACCTCAGCAACAGG+TGG 0.602114 1_2:+48337508 Msa0074130:CDS
CGATCCCAAACAAGATGCAA+AGG 0.603297 1_2:+48333330 Msa0074130:CDS
TGATAAAATGCCAATTGAGG+AGG 0.604474 1_2:+48334985 Msa0074130:CDS
TGACGTGCAGTGTGATTGAA+GGG 0.605647 1_2:+48332948 None:intergenic
AATGAAAATGATTACCAGGT+GGG 0.607119 1_2:-48334031 None:intergenic
TTTGAATGTTCAGAGGAAAG+GGG 0.609926 1_2:+48334406 Msa0074130:CDS
CACAGTCACAGGTCCGATGA+GGG 0.610657 1_2:-48337864 None:intergenic
TGATGTAGCCAAGAAGCAGA+AGG 0.627538 1_2:+48333210 Msa0074130:CDS
AGAGACATTGGAGAAAGTGG+TGG 0.637831 1_2:+48334573 Msa0074130:CDS
TACAGTGATAAGCGTGACGA+TGG 0.639061 1_2:+48334443 Msa0074130:CDS
TGGCTGCCCAACAGGCAGAG+AGG 0.639365 1_2:+48335194 Msa0074130:CDS
TCACAGTCACAGGTCCGATG+AGG 0.649861 1_2:-48337865 None:intergenic
AGTCAGCCTAAAGTCCCACC+TGG 0.657066 1_2:+48334017 Msa0074130:CDS
CATAACACAACACTTAGCAG+TGG 0.698593 1_2:-48338015 None:intergenic
TCGAATGCAAGGAATGCCAG+TGG 0.699446 1_2:-48337733 None:intergenic
GACGTGCAGTGTGATTGAAG+GGG 0.780978 1_2:+48332949 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATATATCTAAATTTTGTT+AGG + chr1_2:48334302-48334321 Msa0074130:intron 10.0%
!! AAAAAAAAAAAAAATGAAAG+TGG - chr1_2:48334697-48334716 None:intergenic 10.0%
!!! TTTTTTTTACCAATAAAAAT+TGG + chr1_2:48335896-48335915 Msa0074130:intron 10.0%
!!! TTTTTTTTACCAATAAAAAT+TGG + chr1_2:48335896-48335915 Msa0074130:intron 10.0%
!! GAAAATATTATAAATTAAAG+AGG - chr1_2:48337191-48337210 None:intergenic 10.0%
!! TTTAAAAAACTCACATAATA+CGG - chr1_2:48334342-48334361 None:intergenic 15.0%
!!! TTTTTAAAGTGTATTACAAA+TGG + chr1_2:48335354-48335373 Msa0074130:intron 15.0%
!! TTTATTGGTAAAAAAAACAT+TGG - chr1_2:48335893-48335912 None:intergenic 15.0%
!! TTTATTGGTAAAAAAAACAT+TGG - chr1_2:48335893-48335912 None:intergenic 15.0%
!!! AATTTTCTCTTATACTATTT+CGG - chr1_2:48338240-48338259 None:intergenic 15.0%
!! TTGAATTGAATCAATTACTA+CGG + chr1_2:48333119-48333138 Msa0074130:five_prime_UTR 20.0%
!! TAATCTACGATAAAAGAATA+TGG - chr1_2:48333386-48333405 None:intergenic 20.0%
!! TTTATCGTAGATTATTCAAA+TGG + chr1_2:48333392-48333411 Msa0074130:intron 20.0%
!! TTATCGTAGATTATTCAAAT+GGG + chr1_2:48333393-48333412 Msa0074130:intron 20.0%
!!! CATTATATAGATTTTTCAAC+CGG + chr1_2:48333629-48333648 Msa0074130:intron 20.0%
!!! ATTATATAGATTTTTCAACC+GGG + chr1_2:48333630-48333649 Msa0074130:intron 20.0%
!!! TATTTTTTTCTGTAGTTCAA+TGG + chr1_2:48334251-48334270 Msa0074130:intron 20.0%
!!! ATTTTTTTCTGTAGTTCAAT+GGG + chr1_2:48334252-48334271 Msa0074130:intron 20.0%
!!! ATTATGTGAGTTTTTTAAAG+TGG + chr1_2:48334343-48334362 Msa0074130:CDS 20.0%
!!! TTATGTGAGTTTTTTAAAGT+GGG + chr1_2:48334344-48334363 Msa0074130:CDS 20.0%
!! ATAAATCATACAATATCTGT+TGG - chr1_2:48334631-48334650 None:intergenic 20.0%
!! GTATGATTTATTAGATTTGT+TGG + chr1_2:48334640-48334659 Msa0074130:intron 20.0%
!!! TTTTTTTTATGGCTAATTCA+AGG + chr1_2:48334709-48334728 Msa0074130:intron 20.0%
!! TTCTAACATATTATGTAACA+TGG + chr1_2:48335078-48335097 Msa0074130:intron 20.0%
!!! TAATTTTAATGCATTTTCCA+TGG + chr1_2:48335575-48335594 Msa0074130:intron 20.0%
!! AAATTTAACAGTTGCAAATT+TGG + chr1_2:48335651-48335670 Msa0074130:intron 20.0%
!!! GTATTGATAAAAGATGTATT+TGG - chr1_2:48336666-48336685 None:intergenic 20.0%
!!! TTTTTTGAATTCCTTCATAT+AGG - chr1_2:48337117-48337136 None:intergenic 20.0%
!! AGGAATTCAAAAAATGTAAT+AGG + chr1_2:48337123-48337142 Msa0074130:intron 20.0%
!! GGAATTCAAAAAATGTAATA+GGG + chr1_2:48337124-48337143 Msa0074130:intron 20.0%
!! GAATTCAAAAAATGTAATAG+GGG + chr1_2:48337125-48337144 Msa0074130:intron 20.0%
!! AGTTAGGAAAACAAATTATA+TGG - chr1_2:48337444-48337463 None:intergenic 20.0%
!!! ACATTTTTGTTGTTTGAATA+TGG + chr1_2:48337891-48337910 Msa0074130:three_prime_UTR 20.0%
!!! CATTTTTGTTGTTTGAATAT+GGG + chr1_2:48337892-48337911 Msa0074130:three_prime_UTR 20.0%
!! GAAACTCAATAACAAAAATT+AGG - chr1_2:48337938-48337957 None:intergenic 20.0%
! TAATAAGAGCCTTTATTGAT+TGG - chr1_2:48333603-48333622 None:intergenic 25.0%
! CCAATAAAACATAACAGATT+AGG - chr1_2:48333928-48333947 None:intergenic 25.0%
!! CCTAATCTGTTATGTTTTAT+TGG + chr1_2:48333925-48333944 Msa0074130:intron 25.0%
!! TTATTGGTAACAGAAAAAGA+AGG + chr1_2:48333941-48333960 Msa0074130:intron 25.0%
! TAACAATGAAAATGATTACC+AGG - chr1_2:48334038-48334057 None:intergenic 25.0%
! ACATTGTCAATCAATCATAA+CGG - chr1_2:48334195-48334214 None:intergenic 25.0%
! TTTATATTATTCAGTGTTGC+TGG + chr1_2:48334275-48334294 Msa0074130:intron 25.0%
! TTCATTCTTGCTTATTCAAA+TGG + chr1_2:48334776-48334795 Msa0074130:intron 25.0%
! TACGTTGTTTATGTACTATT+AGG + chr1_2:48334811-48334830 Msa0074130:intron 25.0%
! TAAAACAACTCAGTAGTTAT+AGG - chr1_2:48335133-48335152 None:intergenic 25.0%
! TCAATGGAAGAAGAAAAAAA+TGG + chr1_2:48335153-48335172 Msa0074130:CDS 25.0%
!! TTTTCCTCAATTAAAAAGGA+GGG - chr1_2:48335298-48335317 None:intergenic 25.0%
!!! TCCTTTTTAATTGAGGAAAA+GGG + chr1_2:48335298-48335317 Msa0074130:intron 25.0%
! GAAGATAATACAACATGATT+AGG - chr1_2:48335413-48335432 None:intergenic 25.0%
! TATTATCTTCTTAAATGCAG+TGG + chr1_2:48335423-48335442 Msa0074130:intron 25.0%
! TGCAAATTTGGAAAATTTGA+AGG + chr1_2:48335663-48335682 Msa0074130:intron 25.0%
! TAACAAAAAAATGGCAGTTA+TGG - chr1_2:48335689-48335708 None:intergenic 25.0%
! TGAGCATCATAACAAAAAAA+TGG - chr1_2:48335698-48335717 None:intergenic 25.0%
!! GTAAAAAAAACATTGGCTAT+GGG - chr1_2:48335886-48335905 None:intergenic 25.0%
!!! ACCAATAAAAATTGGCTTTT+AGG + chr1_2:48335904-48335923 Msa0074130:intron 25.0%
!! TCCTAAAAGCCAATTTTTAT+TGG - chr1_2:48335908-48335927 None:intergenic 25.0%
!! GTAAAAAAAACATTGGCTAT+GGG - chr1_2:48335886-48335905 None:intergenic 25.0%
!!! ACCAATAAAAATTGGCTTTT+AGG + chr1_2:48335904-48335923 Msa0074130:intron 25.0%
!! TCCTAAAAGCCAATTTTTAT+TGG - chr1_2:48335908-48335927 None:intergenic 25.0%
!!! TGTTGTCCAAAACATTTTTT+GGG + chr1_2:48336485-48336504 Msa0074130:intron 25.0%
! TGTATCTAGAAATTTGCAAA+GGG - chr1_2:48336628-48336647 None:intergenic 25.0%
! ATGTATCTAGAAATTTGCAA+AGG - chr1_2:48336629-48336648 None:intergenic 25.0%
!! CTTTTTGCATATACAAAGAA+AGG - chr1_2:48336805-48336824 None:intergenic 25.0%
!!! AGAAGTTCATTTAGTTTGTA+AGG + chr1_2:48336874-48336893 Msa0074130:intron 25.0%
! ATATACTGTAACACATCTTT+AGG + chr1_2:48337004-48337023 Msa0074130:intron 25.0%
! GAAGAAAAAAAAACATGCAA+TGG - chr1_2:48337075-48337094 None:intergenic 25.0%
!!! TAAATTTTTTCTCCCAAACA+AGG + chr1_2:48337249-48337268 Msa0074130:intron 25.0%
!!! GTTTTTGGAAATCAATTGAA+GGG - chr1_2:48337313-48337332 None:intergenic 25.0%
!!! AGTTTTTGGAAATCAATTGA+AGG - chr1_2:48337314-48337333 None:intergenic 25.0%
!!! CTATATTGCTTTCTAGTTTT+TGG - chr1_2:48337328-48337347 None:intergenic 25.0%
! CAAAAACTAGAAAGCAATAT+AGG + chr1_2:48337326-48337345 Msa0074130:intron 25.0%
! ATCATTAAACTATCACATCA+AGG - chr1_2:48337683-48337702 None:intergenic 25.0%
! AGTGATTTCATTATCATCAA+AGG - chr1_2:48337778-48337797 None:intergenic 25.0%
!! ATTTTCATCTGTGACATTTT+CGG + chr1_2:48338200-48338219 Msa0074130:three_prime_UTR 25.0%
! TTAGATTAGGGTTTGTGTTT+TGG - chr1_2:48333013-48333032 None:intergenic 30.0%
GTTGTTGAAGACAAAACTTT+CGG + chr1_2:48333232-48333251 Msa0074130:CDS 30.0%
! AATACCTTTGCATCTTGTTT+GGG - chr1_2:48333337-48333356 None:intergenic 30.0%
TAATACCTTTGCATCTTGTT+TGG - chr1_2:48333338-48333357 None:intergenic 30.0%
TCGAATAAGCCAATCAATAA+AGG + chr1_2:48333591-48333610 Msa0074130:intron 30.0%
AATGAAAATGATTACCAGGT+GGG - chr1_2:48334034-48334053 None:intergenic 30.0%
GTTTAATTCTGATACACTGT+TGG + chr1_2:48334073-48334092 Msa0074130:intron 30.0%
ATTTGAATGTTCAGAGGAAA+GGG + chr1_2:48334405-48334424 Msa0074130:CDS 30.0%
TCTTATGTTGTCAGATACAA+TGG + chr1_2:48334537-48334556 Msa0074130:intron 30.0%
! TTAGGTATGCAAACACTTTT+TGG + chr1_2:48334829-48334848 Msa0074130:intron 30.0%
ATACAATTCTTACCACCATT+TGG - chr1_2:48334896-48334915 None:intergenic 30.0%
!! TGTTCTAAAATCCCAAATGA+AGG + chr1_2:48334943-48334962 Msa0074130:CDS 30.0%
ATCTGATAAAATGCCAATTG+AGG + chr1_2:48334982-48335001 Msa0074130:CDS 30.0%
!! CTACTGAGTTGTTTTATCAA+TGG + chr1_2:48335137-48335156 Msa0074130:CDS 30.0%
GATAATGAACATACCTCATA+CGG - chr1_2:48335231-48335250 None:intergenic 30.0%
TTTCCTCAATTAAAAAGGAG+GGG - chr1_2:48335297-48335316 None:intergenic 30.0%
! CTTTTCCTCAATTAAAAAGG+AGG - chr1_2:48335299-48335318 None:intergenic 30.0%
!! CTCCTTTTTAATTGAGGAAA+AGG + chr1_2:48335297-48335316 Msa0074130:intron 30.0%
! TCCCTTTTCCTCAATTAAAA+AGG - chr1_2:48335302-48335321 None:intergenic 30.0%
AGGAAAAGGGATATATTGAA+GGG + chr1_2:48335311-48335330 Msa0074130:intron 30.0%
ACATTCTGTTCAGTTTCATT+AGG - chr1_2:48335528-48335547 None:intergenic 30.0%
ATTACAAAGAGACATACACT+AGG - chr1_2:48335559-48335578 None:intergenic 30.0%
TTGCATAAAACTAGAAAAGC+AGG - chr1_2:48335733-48335752 None:intergenic 30.0%
AACCAAAAAGCAAAGTTGAA+GGG - chr1_2:48335763-48335782 None:intergenic 30.0%
!!! AACTTTGCTTTTTGGTTCAT+TGG + chr1_2:48335766-48335785 Msa0074130:intron 30.0%
ATTGGATCTTAGTTTAGACA+TGG + chr1_2:48335784-48335803 Msa0074130:intron 30.0%
TTGGATCTTAGTTTAGACAT+GGG + chr1_2:48335785-48335804 Msa0074130:intron 30.0%
! GGTAAAAAAAACATTGGCTA+TGG - chr1_2:48335887-48335906 None:intergenic 30.0%
!!! TAAAAATTGGCTTTTAGGAG+TGG + chr1_2:48335909-48335928 Msa0074130:intron 30.0%
TTATAGCTCAAAACATGAGT+AGG - chr1_2:48335940-48335959 None:intergenic 30.0%
GCACAAATTCATAAAACAAC+TGG - chr1_2:48336061-48336080 None:intergenic 30.0%
AAGAGATAACGTTTGTAACA+TGG + chr1_2:48336129-48336148 Msa0074130:intron 30.0%
AGAGATAACGTTTGTAACAT+GGG + chr1_2:48336130-48336149 Msa0074130:intron 30.0%
! GGTAAAAAAAACATTGGCTA+TGG - chr1_2:48335887-48335906 None:intergenic 30.0%
!!! TAAAAATTGGCTTTTAGGAG+TGG + chr1_2:48335909-48335928 Msa0074130:intron 30.0%
TTATAGCTCAAAACATGAGT+AGG - chr1_2:48335940-48335959 None:intergenic 30.0%
GCACAAATTCATAAAACAAC+TGG - chr1_2:48336061-48336080 None:intergenic 30.0%
!!! CTGTTGTCCAAAACATTTTT+TGG + chr1_2:48336484-48336503 Msa0074130:intron 30.0%
!!! GTTGTCCAAAACATTTTTTG+GGG + chr1_2:48336486-48336505 Msa0074130:intron 30.0%
! GAAATCCCCAAAAAATGTTT+TGG - chr1_2:48336494-48336513 None:intergenic 30.0%
! CCAAATGAGTCTTATAAGTA+GGG - chr1_2:48336578-48336597 None:intergenic 30.0%
! ACCAAATGAGTCTTATAAGT+AGG - chr1_2:48336579-48336598 None:intergenic 30.0%
AATACTCTACCAATTTGTCT+TGG + chr1_2:48336681-48336700 Msa0074130:intron 30.0%
ACCAATTTGTCTTGGAAAAT+AGG + chr1_2:48336689-48336708 Msa0074130:intron 30.0%
! TCCTATTTTCCAAGACAAAT+TGG - chr1_2:48336693-48336712 None:intergenic 30.0%
!! GTTCATTTAGTTTGTAAGGT+AGG + chr1_2:48336878-48336897 Msa0074130:intron 30.0%
! GCAAATTATTCTAAAAGACG+TGG + chr1_2:48336915-48336934 Msa0074130:intron 30.0%
TGTGCTTATAAACAAGAACT+AGG - chr1_2:48336976-48336995 None:intergenic 30.0%
! TCTTGTTTATAAGCACATTG+AGG + chr1_2:48336979-48336998 Msa0074130:intron 30.0%
TTGAATTCCTTCATATAGGA+GGG - chr1_2:48337113-48337132 None:intergenic 30.0%
TTTGAATTCCTTCATATAGG+AGG - chr1_2:48337114-48337133 None:intergenic 30.0%
TTCAAAAAATGTAATAGGGG+AGG + chr1_2:48337128-48337147 Msa0074130:intron 30.0%
GGGAGAAAAAATTTAAAGAG+AGG - chr1_2:48337244-48337263 None:intergenic 30.0%
! ATCAATTGAAGGGTTTGTTT+GGG - chr1_2:48337303-48337322 None:intergenic 30.0%
! AATCAATTGAAGGGTTTGTT+TGG - chr1_2:48337304-48337323 None:intergenic 30.0%
CATTCATTATCACACTAAGT+GGG - chr1_2:48337377-48337396 None:intergenic 30.0%
! TGATAATGAATGGTTGTTGT+TGG + chr1_2:48337385-48337404 Msa0074130:intron 30.0%
TGAAGATGAATACAACAGTT+AGG - chr1_2:48337460-48337479 None:intergenic 30.0%
TAACTGTTGTATTCATCTTC+AGG + chr1_2:48337459-48337478 Msa0074130:intron 30.0%
AACTGTTGTATTCATCTTCA+GGG + chr1_2:48337460-48337479 Msa0074130:intron 30.0%
! CTTAATTTGGATTGATGTCT+TGG - chr1_2:48337620-48337639 None:intergenic 30.0%
CAAGACATCAATCCAAATTA+AGG + chr1_2:48337618-48337637 Msa0074130:CDS 30.0%
ACTATTTGCAACATTGCATT+TGG + chr1_2:48337795-48337814 Msa0074130:three_prime_UTR 30.0%
! CAATTCAGTTTTCTGTAGTT+AGG + chr1_2:48337840-48337859 Msa0074130:three_prime_UTR 30.0%
TGCAACTTATATATGTCCTT+AGG + chr1_2:48338043-48338062 Msa0074130:three_prime_UTR 30.0%
GCAACTTATATATGTCCTTA+GGG + chr1_2:48338044-48338063 Msa0074130:three_prime_UTR 30.0%
TTTACTTTCGTATGAGAGAA+TGG - chr1_2:48338149-48338168 None:intergenic 30.0%
ATTCTCTCATACGAAAGTAA+AGG + chr1_2:48338148-48338167 Msa0074130:three_prime_UTR 30.0%
TTCTCTCATACGAAAGTAAA+GGG + chr1_2:48338149-48338168 Msa0074130:three_prime_UTR 30.0%
! TTTTGGATTCGAGAAGCTTA+CGG - chr1_2:48332996-48333015 None:intergenic 35.0%
!! ACATCAGCTTTTGATTGCTT+CGG - chr1_2:48333196-48333215 None:intergenic 35.0%
ACAAGCTGTTTAACCAAACA+GGG - chr1_2:48333432-48333451 None:intergenic 35.0%
!! GCTGTTTTCATAAGCTATCT+TGG + chr1_2:48333481-48333500 Msa0074130:intron 35.0%
TTAAGCCGTTTATCCAAACA+GGG - chr1_2:48333669-48333688 None:intergenic 35.0%
ATTAAGCCGTTTATCCAAAC+AGG - chr1_2:48333670-48333689 None:intergenic 35.0%
TCATATAAGCCAATCCAGAA+AGG + chr1_2:48333900-48333919 Msa0074130:intron 35.0%
! TTGGTAACAGAAAAAGAAGG+AGG + chr1_2:48333944-48333963 Msa0074130:intron 35.0%
CAATGAAAATGATTACCAGG+TGG - chr1_2:48334035-48334054 None:intergenic 35.0%
AACTCACATAATACGGACTT+GGG - chr1_2:48334335-48334354 None:intergenic 35.0%
AAACTCACATAATACGGACT+TGG - chr1_2:48334336-48334355 None:intergenic 35.0%
CTCATGATTTGAATGTTCAG+AGG + chr1_2:48334399-48334418 Msa0074130:CDS 35.0%
GATTTGAATGTTCAGAGGAA+AGG + chr1_2:48334404-48334423 Msa0074130:CDS 35.0%
TTTGAATGTTCAGAGGAAAG+GGG + chr1_2:48334406-48334425 Msa0074130:CDS 35.0%
! TAGGTTGTGTTTGTTTGTTG+TGG + chr1_2:48334470-48334489 Msa0074130:intron 35.0%
!!! GTGTTTGTTTGTTGTGGTTT+TGG + chr1_2:48334476-48334495 Msa0074130:intron 35.0%
!!! TGTTGTGGTTTTGGTTTTGA+TGG + chr1_2:48334485-48334504 Msa0074130:intron 35.0%
AGTACATAAACAACGTACAG+AGG - chr1_2:48334808-48334827 None:intergenic 35.0%
!! ATGCAAACACTTTTTGGATG+CGG + chr1_2:48334835-48334854 Msa0074130:CDS 35.0%
!!! GATTTTAGAACATATCCAGG+TGG - chr1_2:48334935-48334954 None:intergenic 35.0%
!!! TGGGATTTTAGAACATATCC+AGG - chr1_2:48334938-48334957 None:intergenic 35.0%
CTCTAACAAAGCCTTCATTT+GGG - chr1_2:48334957-48334976 None:intergenic 35.0%
TGATAAAATGCCAATTGAGG+AGG + chr1_2:48334985-48335004 Msa0074130:CDS 35.0%
AATGACGATGCTTCTTGTAA+GGG - chr1_2:48335040-48335059 None:intergenic 35.0%
AAATGACGATGCTTCTTGTA+AGG - chr1_2:48335041-48335060 None:intergenic 35.0%
! AGGAGTTGTAGTTTTCACTT+GGG - chr1_2:48335113-48335132 None:intergenic 35.0%
! TAGGAGTTGTAGTTTTCACT+TGG - chr1_2:48335114-48335133 None:intergenic 35.0%
GAGGAAAAGGGATATATTGA+AGG + chr1_2:48335310-48335329 Msa0074130:intron 35.0%
TGTTCAGTTTCATTAGGTTC+TGG - chr1_2:48335522-48335541 None:intergenic 35.0%
! GCAGCTTTTATCTATATCCA+TGG - chr1_2:48335595-48335614 None:intergenic 35.0%
GATAAAAGCTGCAATATGAC+TGG + chr1_2:48335603-48335622 Msa0074130:intron 35.0%
!! TACCCTTCAACTTTGCTTTT+TGG + chr1_2:48335758-48335777 Msa0074130:intron 35.0%
GAACCAAAAAGCAAAGTTGA+AGG - chr1_2:48335764-48335783 None:intergenic 35.0%
TGGATCTTAGTTTAGACATG+GGG + chr1_2:48335786-48335805 Msa0074130:intron 35.0%
! TCAGTAACGTTTGGGATTTA+TGG + chr1_2:48335821-48335840 Msa0074130:intron 35.0%
! TTTGGGATTTATGGTGCAAA+TGG + chr1_2:48335830-48335849 Msa0074130:intron 35.0%
TTGGGATTTATGGTGCAAAT+GGG + chr1_2:48335831-48335850 Msa0074130:intron 35.0%
! GTTTGTAACTTTTATGCACG+AGG + chr1_2:48335857-48335876 Msa0074130:intron 35.0%
TGTTTGCATGTGACAATGTA+TGG + chr1_2:48335978-48335997 Msa0074130:intron 35.0%
GTAATTAGCGTCTCATCTTT+AGG + chr1_2:48336002-48336021 Msa0074130:intron 35.0%
TCATAAAACAACTGGCTACA+AGG - chr1_2:48336053-48336072 None:intergenic 35.0%
! TTTTCCAAAGCCATGGTTTT+GGG - chr1_2:48336103-48336122 None:intergenic 35.0%
! TTTTTCCAAAGCCATGGTTT+TGG - chr1_2:48336104-48336123 None:intergenic 35.0%
!!! TGTACTTTTTTCCAAAGCCA+TGG - chr1_2:48336110-48336129 None:intergenic 35.0%
GAGATAACGTTTGTAACATG+GGG + chr1_2:48336131-48336150 Msa0074130:intron 35.0%
! TCAGTAACGTTTGGGATTTA+TGG + chr1_2:48335821-48335840 Msa0074130:intron 35.0%
! TTTGGGATTTATGGTGCAAA+TGG + chr1_2:48335830-48335849 Msa0074130:intron 35.0%
TTGGGATTTATGGTGCAAAT+GGG + chr1_2:48335831-48335850 Msa0074130:intron 35.0%
! GTTTGTAACTTTTATGCACG+AGG + chr1_2:48335857-48335876 Msa0074130:intron 35.0%
TGTTTGCATGTGACAATGTA+TGG + chr1_2:48335978-48335997 Msa0074130:intron 35.0%
GTAATTAGCGTCTCATCTTT+AGG + chr1_2:48336002-48336021 Msa0074130:intron 35.0%
TCATAAAACAACTGGCTACA+AGG - chr1_2:48336053-48336072 None:intergenic 35.0%
! TTTTCCAAAGCCATGGTTTT+GGG - chr1_2:48336103-48336122 None:intergenic 35.0%
! TTTTTCCAAAGCCATGGTTT+TGG - chr1_2:48336104-48336123 None:intergenic 35.0%
!!! TGTACTTTTTTCCAAAGCCA+TGG - chr1_2:48336110-48336129 None:intergenic 35.0%
!! CAGCATGTTTGTTTTCTGTT+AGG - chr1_2:48336516-48336535 None:intergenic 35.0%
TGCTGTGTGATTATTGTGTA+TGG + chr1_2:48336531-48336550 Msa0074130:intron 35.0%
CCCTACTTATAAGACTCATT+TGG + chr1_2:48336575-48336594 Msa0074130:intron 35.0%
TGCAAAGGGACTTGTATTTA+GGG - chr1_2:48336614-48336633 None:intergenic 35.0%
TTGCAAAGGGACTTGTATTT+AGG - chr1_2:48336615-48336634 None:intergenic 35.0%
! TGCCAAAGTACCCTATTAAT+AGG + chr1_2:48336825-48336844 Msa0074130:intron 35.0%
! GCCAAAGTACCCTATTAATA+GGG + chr1_2:48336826-48336845 Msa0074130:intron 35.0%
! TCCCTATTAATAGGGTACTT+TGG - chr1_2:48336830-48336849 None:intergenic 35.0%
AAGTACCCTATTAATAGGGA+CGG + chr1_2:48336830-48336849 Msa0074130:intron 35.0%
!! CATTTAGTTTGTAAGGTAGG+TGG + chr1_2:48336881-48336900 Msa0074130:intron 35.0%
!! AAAAGACGTGGAATTTGTTG+TGG + chr1_2:48336927-48336946 Msa0074130:intron 35.0%
! ACACATCTTTAGGTTTCGTT+TGG + chr1_2:48337014-48337033 Msa0074130:intron 35.0%
! CACATCTTTAGGTTTCGTTT+GGG + chr1_2:48337015-48337034 Msa0074130:intron 35.0%
! AATGTAATAGGGGAGGATTT+TGG + chr1_2:48337135-48337154 Msa0074130:intron 35.0%
! AGGAATTTCTCACCTTGTTT+GGG - chr1_2:48337264-48337283 None:intergenic 35.0%
ATTATCACACTAAGTGGGAT+CGG - chr1_2:48337372-48337391 None:intergenic 35.0%
CCATTCATTATCACACTAAG+TGG - chr1_2:48337378-48337397 None:intergenic 35.0%
! CCACTTAGTGTGATAATGAA+TGG + chr1_2:48337375-48337394 Msa0074130:intron 35.0%
ACTGTTGTATTCATCTTCAG+GGG + chr1_2:48337461-48337480 Msa0074130:intron 35.0%
AAAAAACTTCCTCGAATGCA+AGG - chr1_2:48337747-48337766 None:intergenic 35.0%
! CCACTTCATTTTCTTTCAAC+CGG - chr1_2:48338093-48338112 None:intergenic 35.0%
ATGAAGTGGAAAGCAATATG+TGG + chr1_2:48338104-48338123 Msa0074130:three_prime_UTR 35.0%
TGAAGTGGAAAGCAATATGT+GGG + chr1_2:48338105-48338124 Msa0074130:three_prime_UTR 35.0%
! GTGTGATTGAAGGGGTATAT+CGG + chr1_2:48332957-48332976 Msa0074130:five_prime_UTR 40.0%
! TGTGATTGAAGGGGTATATC+GGG + chr1_2:48332958-48332977 Msa0074130:five_prime_UTR 40.0%
TCGAGAAGCTTACGGAAATT+TGG - chr1_2:48332988-48333007 None:intergenic 40.0%
! CCAGTGTTTGGGTTAGATTA+GGG - chr1_2:48333025-48333044 None:intergenic 40.0%
! GACGATGTGAGAGATTTTCT+GGG - chr1_2:48333069-48333088 None:intergenic 40.0%
! TGACGATGTGAGAGATTTTC+TGG - chr1_2:48333070-48333089 None:intergenic 40.0%
TTCAACAACCTTCTGCTTCT+TGG - chr1_2:48333221-48333240 None:intergenic 40.0%
! CTTTGCATCTTGTTTGGGAT+CGG - chr1_2:48333332-48333351 None:intergenic 40.0%
! TTTTCTGCTTATGCCCTGTT+TGG + chr1_2:48333416-48333435 Msa0074130:intron 40.0%
GACAAGCTGTTTAACCAAAC+AGG - chr1_2:48333433-48333452 None:intergenic 40.0%
CAGCTTATTGTGACAAGTTC+TGG - chr1_2:48333798-48333817 None:intergenic 40.0%
! GTGCATGTCATTAGCTGTTT+TGG + chr1_2:48333830-48333849 Msa0074130:intron 40.0%
TAACAGATTAGGAGCCTTTC+TGG - chr1_2:48333917-48333936 None:intergenic 40.0%
GAAAAAGAAGGAGGAAGAGA+AGG + chr1_2:48333953-48333972 Msa0074130:intron 40.0%
TGTCAGATACAATGGAAGAG+TGG + chr1_2:48334545-48334564 Msa0074130:intron 40.0%
GTCAGATACAATGGAAGAGT+GGG + chr1_2:48334546-48334565 Msa0074130:intron 40.0%
TCAAGAGACATTGGAGAAAG+TGG + chr1_2:48334570-48334589 Msa0074130:CDS 40.0%
TAGAGAGGAAGCAATATGGT+TGG + chr1_2:48334858-48334877 Msa0074130:CDS 40.0%
!!! GGAAGCAATATGGTTGGTTT+TGG + chr1_2:48334864-48334883 Msa0074130:CDS 40.0%
!!! TGGTTTTGGTCATGTCCAAA+TGG + chr1_2:48334878-48334897 Msa0074130:CDS 40.0%
! TTTTGGTCATGTCCAAATGG+TGG + chr1_2:48334881-48334900 Msa0074130:CDS 40.0%
CCTCTAACAAAGCCTTCATT+TGG - chr1_2:48334958-48334977 None:intergenic 40.0%
!! CCAAATGAAGGCTTTGTTAG+AGG + chr1_2:48334955-48334974 Msa0074130:CDS 40.0%
! TTTTCGATCTCCTCCTCAAT+TGG - chr1_2:48334998-48335017 None:intergenic 40.0%
ATGACGATGCTTCTTGTAAG+GGG - chr1_2:48335039-48335058 None:intergenic 40.0%
!! TAGCCCCTCCTTTTTAATTG+AGG + chr1_2:48335291-48335310 Msa0074130:intron 40.0%
!!! TTGAAGGGCTGCATGTTTTT+TGG + chr1_2:48335326-48335345 Msa0074130:intron 40.0%
ATCCACAAACAAGCTAGCAT+TGG - chr1_2:48335466-48335485 None:intergenic 40.0%
!! CATTAGGTTCTGGTTCTCTT+TGG - chr1_2:48335512-48335531 None:intergenic 40.0%
AAATCCCAAACGTTACTGAC+TGG - chr1_2:48335820-48335839 None:intergenic 40.0%
! GGTGCAAGCTCAAAAAGTAT+AGG - chr1_2:48336032-48336051 None:intergenic 40.0%
TTTGTGCCTGAATTCCTGTT+TGG + chr1_2:48336074-48336093 Msa0074130:intron 40.0%
!!! ATGGTTTTGGGATTCCAAAC+AGG - chr1_2:48336091-48336110 None:intergenic 40.0%
! TGTTTGGAATCCCAAAACCA+TGG + chr1_2:48336090-48336109 Msa0074130:intron 40.0%
AAATCCCAAACGTTACTGAC+TGG - chr1_2:48335820-48335839 None:intergenic 40.0%
! GGTGCAAGCTCAAAAAGTAT+AGG - chr1_2:48336032-48336051 None:intergenic 40.0%
TTTGTGCCTGAATTCCTGTT+TGG + chr1_2:48336074-48336093 Msa0074130:intron 40.0%
!!! ATGGTTTTGGGATTCCAAAC+AGG - chr1_2:48336091-48336110 None:intergenic 40.0%
! TGTTTGGAATCCCAAAACCA+TGG + chr1_2:48336090-48336109 Msa0074130:intron 40.0%
GCAAAGGGACTTGTATTTAG+GGG - chr1_2:48336613-48336632 None:intergenic 40.0%
AAGGTAGGTGGTAAGCATAT+TGG + chr1_2:48336893-48336912 Msa0074130:intron 40.0%
AAGGAAGGAAGGAAAATGGA+AGG + chr1_2:48337041-48337060 Msa0074130:intron 40.0%
AGGAAGGAAGGAAAATGGAA+GGG + chr1_2:48337042-48337061 Msa0074130:intron 40.0%
ACTAAGACCCTCCTATATGA+AGG + chr1_2:48337103-48337122 Msa0074130:intron 40.0%
GAGGAATTTCTCACCTTGTT+TGG - chr1_2:48337265-48337284 None:intergenic 40.0%
GTTTGGGAATTAGGAGAAAG+AGG - chr1_2:48337287-48337306 None:intergenic 40.0%
! GAAGGGTTTGTTTGGGAATT+AGG - chr1_2:48337296-48337315 None:intergenic 40.0%
TCAATCCAAATTAAGGAGCC+AGG + chr1_2:48337625-48337644 Msa0074130:CDS 40.0%
CAAGGTTGAGAATACTTCTC+AGG - chr1_2:48337665-48337684 None:intergenic 40.0%
TATCATTTGCTTCTAGCCAC+TGG + chr1_2:48337717-48337736 Msa0074130:three_prime_UTR 40.0%
AAAATGTCCATCACAGTCAC+AGG - chr1_2:48337878-48337897 None:intergenic 40.0%
CATAACACAACACTTAGCAG+TGG - chr1_2:48338018-48338037 None:intergenic 40.0%
! CACTGCTAAGTGTTGTGTTA+TGG + chr1_2:48338016-48338035 Msa0074130:three_prime_UTR 40.0%
ATATATGTCCTTAGGGAGCT+AGG + chr1_2:48338051-48338070 Msa0074130:three_prime_UTR 40.0%
AAGAATAACCTAGCTCCCTA+AGG - chr1_2:48338062-48338081 None:intergenic 40.0%
TTAGGGAGCTAGGTTATTCT+TGG + chr1_2:48338061-48338080 Msa0074130:three_prime_UTR 40.0%
TAGGGAGCTAGGTTATTCTT+GGG + chr1_2:48338062-48338081 Msa0074130:three_prime_UTR 40.0%
AGGTTATTCTTGGGAGTTTC+CGG + chr1_2:48338071-48338090 Msa0074130:three_prime_UTR 40.0%
CCGGTTGAAAGAAAATGAAG+TGG + chr1_2:48338090-48338109 Msa0074130:three_prime_UTR 40.0%
CCCTAATCTAACCCAAACAC+TGG + chr1_2:48333022-48333041 Msa0074130:five_prime_UTR 45.0%
! GCCAGTGTTTGGGTTAGATT+AGG - chr1_2:48333026-48333045 None:intergenic 45.0%
!! TCAGCTTTTGATTGCTTCGG+AGG - chr1_2:48333193-48333212 None:intergenic 45.0%
TGATGTAGCCAAGAAGCAGA+AGG + chr1_2:48333210-48333229 Msa0074130:CDS 45.0%
! TCTTGTTTGGGATCGGTTCT+GGG - chr1_2:48333325-48333344 None:intergenic 45.0%
! ATCTTGTTTGGGATCGGTTC+TGG - chr1_2:48333326-48333345 None:intergenic 45.0%
CGATCCCAAACAAGATGCAA+AGG + chr1_2:48333330-48333349 Msa0074130:CDS 45.0%
GTAGGCCCTGTTTGGATAAA+CGG + chr1_2:48333661-48333680 Msa0074130:intron 45.0%
GATTAGGAGCCTTTCTGGAT+TGG - chr1_2:48333912-48333931 None:intergenic 45.0%
GGAAGAGAAGGCAAAAGAGA+AGG + chr1_2:48333965-48333984 Msa0074130:CDS 45.0%
TGATTACCAGGTGGGACTTT+AGG - chr1_2:48334026-48334045 None:intergenic 45.0%
TAAAGTGGGTCAGTGTGCTA+AGG + chr1_2:48334358-48334377 Msa0074130:CDS 45.0%
AAAGTGGGTCAGTGTGCTAA+GGG + chr1_2:48334359-48334378 Msa0074130:CDS 45.0%
TACAGTGATAAGCGTGACGA+TGG + chr1_2:48334443-48334462 Msa0074130:CDS 45.0%
TAAGCGTGACGATGGTATGT+AGG + chr1_2:48334451-48334470 Msa0074130:intron 45.0%
AGAGTGGGATCAAGAGACAT+TGG + chr1_2:48334561-48334580 Msa0074130:CDS 45.0%
AGAGACATTGGAGAAAGTGG+TGG + chr1_2:48334573-48334592 Msa0074130:CDS 45.0%
! ACTTTTTGGATGCGGTAGAG+AGG + chr1_2:48334843-48334862 Msa0074130:CDS 45.0%
TATAGACATGCACTTCCACC+TGG + chr1_2:48334917-48334936 Msa0074130:CDS 45.0%
!! GTCCAATGCTAGCTTGTTTG+TGG + chr1_2:48335461-48335480 Msa0074130:CDS 45.0%
! AAACGTTACTGACTGGCATG+GGG - chr1_2:48335813-48335832 None:intergenic 45.0%
! CAAACGTTACTGACTGGCAT+GGG - chr1_2:48335814-48335833 None:intergenic 45.0%
CATGCCAGTCAGTAACGTTT+GGG + chr1_2:48335813-48335832 Msa0074130:intron 45.0%
GGGATTCCAAACAGGAATTC+AGG - chr1_2:48336083-48336102 None:intergenic 45.0%
GAATCCCAAAACCATGGCTT+TGG + chr1_2:48336096-48336115 Msa0074130:intron 45.0%
! AAACGTTACTGACTGGCATG+GGG - chr1_2:48335813-48335832 None:intergenic 45.0%
! CAAACGTTACTGACTGGCAT+GGG - chr1_2:48335814-48335833 None:intergenic 45.0%
CATGCCAGTCAGTAACGTTT+GGG + chr1_2:48335813-48335832 Msa0074130:intron 45.0%
GGGATTCCAAACAGGAATTC+AGG - chr1_2:48336083-48336102 None:intergenic 45.0%
GAATCCCAAAACCATGGCTT+TGG + chr1_2:48336096-48336115 Msa0074130:intron 45.0%
TACCCTATTAATAGGGACGG+AGG + chr1_2:48336833-48336852 Msa0074130:intron 45.0%
ACCCTATTAATAGGGACGGA+GGG + chr1_2:48336834-48336853 Msa0074130:intron 45.0%
TCCCTCCGTCCCTATTAATA+GGG - chr1_2:48336838-48336857 None:intergenic 45.0%
TTAGGTTTCGTTTGGGCGAA+AGG + chr1_2:48337022-48337041 Msa0074130:intron 45.0%
GCGAAAGGAAGGAAGGAAAA+TGG + chr1_2:48337037-48337056 Msa0074130:intron 45.0%
TGGGAATTAGGAGAAAGAGG+AGG - chr1_2:48337284-48337303 None:intergenic 45.0%
TGTATTCATCTTCAGGGGAC+TGG + chr1_2:48337466-48337485 Msa0074130:intron 45.0%
GTATTCATCTTCAGGGGACT+GGG + chr1_2:48337467-48337486 Msa0074130:intron 45.0%
!! ACTGGGAGTGCTGCTAATAA+TGG + chr1_2:48337484-48337503 Msa0074130:CDS 45.0%
ATCGTCGTCGTCAATGTCAT+CGG - chr1_2:48337551-48337570 None:intergenic 45.0%
TGACGACGACGATGATGAAT+TGG + chr1_2:48337558-48337577 Msa0074130:CDS 45.0%
CGACGATGATGAATTGGACT+TGG + chr1_2:48337564-48337583 Msa0074130:CDS 45.0%
! CTTGGACGAGTTGAATGAAC+TGG + chr1_2:48337582-48337601 Msa0074130:CDS 45.0%
TCTGTAGTTAGGTCCCTCAT+CGG + chr1_2:48337851-48337870 Msa0074130:three_prime_UTR 45.0%
GAGTTTCCTCTACTTCGCAA+AGG + chr1_2:48337951-48337970 Msa0074130:three_prime_UTR 45.0%
AACACAACACTTAGCAGTGG+TGG - chr1_2:48338015-48338034 None:intergenic 45.0%
!!! TTTCATTTTTTTTTTTTTTA+TGG + chr1_2:48334698-48334717 Msa0074130:intron 5.0%
! TGTACCTGGTGCCAGTGTTT+GGG - chr1_2:48333036-48333055 None:intergenic 50.0%
! TTCAACCGGGTTTTCTGCGT+AGG + chr1_2:48333643-48333662 Msa0074130:intron 50.0%
! TTTTCTGCGTAGGCCCTGTT+TGG + chr1_2:48333653-48333672 Msa0074130:intron 50.0%
GCGGTAGAGAGGAAGCAATA+TGG + chr1_2:48334854-48334873 Msa0074130:CDS 50.0%
TGAGGAGGAGATCGAAAAGC+AGG + chr1_2:48335000-48335019 Msa0074130:CDS 50.0%
GGGCTAAGAATGACCGTATG+AGG + chr1_2:48335215-48335234 Msa0074130:CDS 50.0%
! CCAAACGTTACTGACTGGCA+TGG - chr1_2:48335815-48335834 None:intergenic 50.0%
CCATGCCAGTCAGTAACGTT+TGG + chr1_2:48335812-48335831 Msa0074130:intron 50.0%
! CCAAACGTTACTGACTGGCA+TGG - chr1_2:48335815-48335834 None:intergenic 50.0%
CCATGCCAGTCAGTAACGTT+TGG + chr1_2:48335812-48335831 Msa0074130:intron 50.0%
CTCCCTCCGTCCCTATTAAT+AGG - chr1_2:48336839-48336858 None:intergenic 50.0%
GTTTCGTTTGGGCGAAAGGA+AGG + chr1_2:48337026-48337045 Msa0074130:intron 50.0%
TCGTCGTCGTCAATGTCATC+GGG - chr1_2:48337550-48337569 None:intergenic 50.0%
CAGCTCCTGGCTCCTTAATT+TGG - chr1_2:48337633-48337652 None:intergenic 50.0%
CAGGATTAAGCTTCAGCTCC+TGG - chr1_2:48337646-48337665 None:intergenic 50.0%
TCGAATGCAAGGAATGCCAG+TGG - chr1_2:48337736-48337755 None:intergenic 50.0%
ACTGGCATTCCTTGCATTCG+AGG + chr1_2:48337735-48337754 Msa0074130:three_prime_UTR 50.0%
AAGCAGCCTTTGCGAAGTAG+AGG - chr1_2:48337960-48337979 None:intergenic 50.0%
CTAACCCAAACACTGGCACC+AGG + chr1_2:48333029-48333048 Msa0074130:five_prime_UTR 55.0%
! GTGTACCTGGTGCCAGTGTT+TGG - chr1_2:48333037-48333056 None:intergenic 55.0%
TGGGTGTGTGTGTGTGTACC+TGG - chr1_2:48333050-48333069 None:intergenic 55.0%
!! GCTTCGGAGGCATCTCGTAT+CGG - chr1_2:48333180-48333199 None:intergenic 55.0%
!! ATCGGTTCTGGGTTGAACGG+AGG - chr1_2:48333314-48333333 None:intergenic 55.0%
!! GGGATCGGTTCTGGGTTGAA+CGG - chr1_2:48333317-48333336 None:intergenic 55.0%
AGTCAGCCTAAAGTCCCACC+TGG + chr1_2:48334017-48334036 Msa0074130:CDS 55.0%
GGACGAGAGAGATGCCAGTT+TGG + chr1_2:48335174-48335193 Msa0074130:CDS 55.0%
CTTAGCCCTCTCTGCCTGTT+GGG - chr1_2:48335203-48335222 None:intergenic 55.0%
TCTTAGCCCTCTCTGCCTGT+TGG - chr1_2:48335204-48335223 None:intergenic 55.0%
CGTTTGGGCGAAAGGAAGGA+AGG + chr1_2:48337030-48337049 Msa0074130:intron 55.0%
CACAGTCACAGGTCCGATGA+GGG - chr1_2:48337867-48337886 None:intergenic 55.0%
TCACAGTCACAGGTCCGATG+AGG - chr1_2:48337868-48337887 None:intergenic 55.0%
CATCGGACCTGTGACTGTGA+TGG + chr1_2:48337868-48337887 Msa0074130:three_prime_UTR 55.0%
CAGGGCCTACGCAGAAAACC+CGG - chr1_2:48333651-48333670 None:intergenic 60.0%
TGCCAGTTTGGCTGCCCAAC+AGG + chr1_2:48335186-48335205 Msa0074130:CDS 60.0%
TGCCTGTTGGGCAGCCAAAC+TGG - chr1_2:48335191-48335210 None:intergenic 60.0%
! CCACCTGTTGCTGAGGTGCT+GGG - chr1_2:48337511-48337530 None:intergenic 60.0%
TGGCTGCCCAACAGGCAGAG+AGG + chr1_2:48335194-48335213 Msa0074130:CDS 65.0%
GGCTGCCCAACAGGCAGAGA+GGG + chr1_2:48335195-48335214 Msa0074130:CDS 65.0%
GGTCCCAGCACCTCAGCAAC+AGG + chr1_2:48337505-48337524 Msa0074130:CDS 65.0%
CCCAGCACCTCAGCAACAGG+TGG + chr1_2:48337508-48337527 Msa0074130:CDS 65.0%
GCCACCTGTTGCTGAGGTGC+TGG - chr1_2:48337512-48337531 None:intergenic 65.0%
GTCTGCGCCACCTGTTGCTG+AGG - chr1_2:48337518-48337537 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 48332957 48338373 48332957 ID=Msa0074130;Name=Msa0074130
chr1_2 mRNA 48332957 48338373 48332957 ID=Msa0074130-mRNA-1;Parent=Msa0074130;Name=Msa0074130-mRNA-1;_AED=0.03;_eAED=0.03;_QI=230|1|1|1|1|1|8|713|360
chr1_2 exon 48332957 48333351 48332957 ID=Msa0074130-mRNA-1:exon:14693;Parent=Msa0074130-mRNA-1
chr1_2 exon 48333954 48334038 48333954 ID=Msa0074130-mRNA-1:exon:14694;Parent=Msa0074130-mRNA-1
chr1_2 exon 48334324 48334464 48334324 ID=Msa0074130-mRNA-1:exon:14695;Parent=Msa0074130-mRNA-1
chr1_2 exon 48334551 48334639 48334551 ID=Msa0074130-mRNA-1:exon:14696;Parent=Msa0074130-mRNA-1
chr1_2 exon 48334833 48335021 48334833 ID=Msa0074130-mRNA-1:exon:14697;Parent=Msa0074130-mRNA-1
chr1_2 exon 48335106 48335236 48335106 ID=Msa0074130-mRNA-1:exon:14698;Parent=Msa0074130-mRNA-1
chr1_2 exon 48335443 48335545 48335443 ID=Msa0074130-mRNA-1:exon:14699;Parent=Msa0074130-mRNA-1
chr1_2 exon 48337481 48338373 48337481 ID=Msa0074130-mRNA-1:exon:14700;Parent=Msa0074130-mRNA-1
chr1_2 five_prime_UTR 48332957 48333186 48332957 ID=Msa0074130-mRNA-1:five_prime_utr;Parent=Msa0074130-mRNA-1
chr1_2 CDS 48333187 48333351 48333187 ID=Msa0074130-mRNA-1:cds;Parent=Msa0074130-mRNA-1
chr1_2 CDS 48333954 48334038 48333954 ID=Msa0074130-mRNA-1:cds;Parent=Msa0074130-mRNA-1
chr1_2 CDS 48334324 48334464 48334324 ID=Msa0074130-mRNA-1:cds;Parent=Msa0074130-mRNA-1
chr1_2 CDS 48334551 48334639 48334551 ID=Msa0074130-mRNA-1:cds;Parent=Msa0074130-mRNA-1
chr1_2 CDS 48334833 48335021 48334833 ID=Msa0074130-mRNA-1:cds;Parent=Msa0074130-mRNA-1
chr1_2 CDS 48335106 48335236 48335106 ID=Msa0074130-mRNA-1:cds;Parent=Msa0074130-mRNA-1
chr1_2 CDS 48335443 48335545 48335443 ID=Msa0074130-mRNA-1:cds;Parent=Msa0074130-mRNA-1
chr1_2 CDS 48337481 48337660 48337481 ID=Msa0074130-mRNA-1:cds;Parent=Msa0074130-mRNA-1
chr1_2 three_prime_UTR 48337661 48338373 48337661 ID=Msa0074130-mRNA-1:three_prime_utr;Parent=Msa0074130-mRNA-1
Gene Sequence

>Msa0074130

ATGCCTCCGAAGCAATCAAAAGCTGATGTAGCCAAGAAGCAGAAGGTTGTTGAAGACAAAACTTTCGGTCTCAAAAACAAAAACAAAAGCAAAGCTGTTCAGAAATATGTTCAGAATCTCAAATCCTCCGTTCAACCCAGAACCGATCCCAAACAAGATGCAAAGAAAAAGAAGGAGGAAGAGAAGGCAAAAGAGAAGGAGCTGAATGATTTGTTCAAAATTGCTGTTAGTCAGCCTAAAGTCCCACCTGGTGTTGATCCCAAGTCCGTATTATGTGAGTTTTTTAAAGTGGGTCAGTGTGCTAAGGGATTCAAATGCAAATTCTCTCATGATTTGAATGTTCAGAGGAAAGGGGAGAAAATTGACATATACAGTGATAAGCGTGACGATGATACAATGGAAGAGTGGGATCAAGAGACATTGGAGAAAGTGGTGGAGTCGAAGAAAAATGAGTATAATCAGAACAAACCAACAGATATTGTATGCAAACACTTTTTGGATGCGGTAGAGAGGAAGCAATATGGTTGGTTTTGGTCATGTCCAAATGGTGGTAAGAATTGTATCTATAGACATGCACTTCCACCTGGATATGTTCTAAAATCCCAAATGAAGGCTTTGTTAGAGGAAGAATCTGATAAAATGCCAATTGAGGAGGAGATCGAAAAGCAGCGCTCCCAAGTGAAAACTACAACTCCTATAACTACTGAGTTGTTTTATCAATGGAAGAAGAAAAAAATGGACGAGAGAGATGCCAGTTTGGCTGCCCAACAGGCAGAGAGGGCTAAGAATGACCGTATGAGTGGTCGTGAGCTGTTTTTGTCCAATGCTAGCTTGTTTGTGGATGATGCTGAAGCATACGACAACTACCAAAGAGAACCAGAACCTAATGAAACTGAACAGAATGGGACTGGGAGTGCTGCTAATAATGGTCCCAGCACCTCAGCAACAGGTGGCGCAGACGATGAACTTCCCGATGACATTGACGACGACGATGATGAATTGGACTTGGACGAGTTGAATGAACTGGAAGCAAGTTTAGCCAAGACATCAATCCAAATTAAGGAGCCAGGAGCTGAAGCTTAA
Protein sequence

>Msa0074130

MPPKQSKADVAKKQKVVEDKTFGLKNKNKSKAVQKYVQNLKSSVQPRTDPKQDAKKKKEEEKAKEKELNDLFKIAVSQPKVPPGVDPKSVLCEFFKVGQCAKGFKCKFSHDLNVQRKGEKIDIYSDKRDDDTMEEWDQETLEKVVESKKNEYNQNKPTDIVCKHFLDAVERKQYGWFWSCPNGGKNCIYRHALPPGYVLKSQMKALLEEESDKMPIEEEIEKQRSQVKTTTPITTELFYQWKKKKMDERDASLAAQQAERAKNDRMSGRELFLSNASLFVDDAEAYDNYQREPEPNETEQNGTGSAANNGPSTSATGGADDELPDDIDDDDDELDLDELNELEASLAKTSIQIKEPGAEA*