AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0075150

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0075150 MtrunA17_Chr1g0183321 96.438 758 27 0 1 758 1 758 0.0 1525
Msa0075150 MtrunA17_Chr7g0262001 51.148 784 279 21 5 757 3 713 0.0 652
Msa0075150 MtrunA17_Chr1g0190311 59.639 332 129 5 418 746 315 644 1.81e-144 439
Msa0075150 MtrunA17_Chr1g0190311 47.945 73 34 2 6 74 4 76 1.92e-11 67.4
Msa0075150 MtrunA17_Chr8g0392541 50.698 215 82 6 418 629 106 299 3.04e-62 211
Msa0075150 MtrunA17_Chr5g0399801 30.303 330 160 11 428 741 809 1084 1.59e-32 135
Msa0075150 MtrunA17_Chr7g0255181 29.909 331 151 10 430 743 436 702 5.09e-30 126
Msa0075150 MtrunA17_Chr3g0080761 28.402 338 170 10 428 743 374 661 2.22e-29 124
Msa0075150 MtrunA17_Chr8g0373821 37.158 183 103 5 561 741 361 533 1.10e-28 121
Msa0075150 MtrunA17_Chr8g0354821 27.976 336 173 10 428 744 401 686 8.62e-28 119
Msa0075150 MtrunA17_Chr4g0003501 29.464 336 153 14 428 741 677 950 1.96e-27 119
Msa0075150 MtrunA17_Chr4g0003511 29.552 335 156 14 428 741 772 1047 5.04e-27 118
Msa0075150 MtrunA17_Chr7g0252211 34.615 208 107 5 559 742 551 753 1.54e-25 112
Msa0075150 MtrunA17_Chr6g0476111 28.610 374 187 12 395 742 371 690 1.99e-25 112
Msa0075150 MtrunA17_Chr5g0403241 36.413 184 108 6 561 742 1327 1503 2.12e-25 113
Msa0075150 MtrunA17_Chr4g0075321 37.234 188 101 7 561 742 884 1060 5.50e-25 111
Msa0075150 MtrunA17_Chr6g0476121 28.342 374 188 12 395 742 320 639 2.56e-24 108
Msa0075150 MtrunA17_Chr1g0170651 29.560 318 151 11 428 741 293 541 4.02e-21 98.2
Msa0075150 MtrunA17_Chr8g0368901 26.688 311 148 12 430 720 507 757 1.47e-20 97.1
Msa0075150 MtrunA17_Chr8g0368911 25.402 311 152 11 430 720 500 750 2.03e-19 93.6
Msa0075150 MtrunA17_Chr1g0163051 25.079 315 156 11 430 724 396 650 2.10e-18 89.7
Msa0075150 MtrunA17_Chr6g0460921 32.500 160 102 3 563 719 241 397 5.16e-18 87.4
Msa0075150 MtrunA17_Chr6g0467531 29.545 176 109 4 559 721 392 565 7.45e-18 87.8
Msa0075150 MtrunA17_Chr6g0467381 29.545 176 109 4 559 721 392 565 8.57e-18 87.8
Msa0075150 MtrunA17_Chr6g0467421 29.545 176 109 4 559 721 392 565 8.64e-18 87.8
Msa0075150 MtrunA17_Chr6g0467411 29.545 176 109 4 559 721 310 483 1.73e-17 86.3
Msa0075150 MtrunA17_Chr3g0125251 31.068 206 99 8 548 742 1288 1461 4.23e-17 86.7
Msa0075150 MtrunA17_Chr6g0467401 28.977 176 110 4 559 721 392 565 1.51e-16 83.6
Msa0075150 MtrunA17_Chr2g0306961 28.736 174 109 4 561 721 293 464 8.79e-16 80.9
Msa0075150 MtrunA17_Chr7g0232841 29.412 221 93 9 568 741 319 523 5.48e-15 78.6
Msa0075150 MtrunA17_Chr7g0232981 29.897 194 112 7 568 741 322 511 1.54e-14 77.0
Msa0075150 MtrunA17_Chr1g0201621 29.050 179 95 6 569 741 67 219 3.82e-13 72.4
Msa0075150 MtrunA17_Chr1g0201311 28.492 179 96 6 569 741 67 219 2.16e-12 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0075150 AT5G43990.3 40.025 787 350 20 5 749 3 709 1.23e-167 500
Msa0075150 AT5G43990.11 40.025 787 350 20 5 749 3 709 1.23e-167 500
Msa0075150 AT5G43990.1 40.025 787 350 20 5 749 3 709 1.23e-167 500
Msa0075150 AT5G43990.4 40.025 787 350 20 5 749 3 709 1.23e-167 500
Msa0075150 AT5G43990.9 40.025 787 350 20 5 749 26 732 2.85e-167 500
Msa0075150 AT5G43990.2 40.025 787 350 20 5 749 26 732 2.85e-167 500
Msa0075150 AT5G43990.16 40.337 771 350 19 5 749 3 689 1.06e-164 492
Msa0075150 AT5G43990.5 40.337 771 350 19 5 749 3 689 1.06e-164 492
Msa0075150 AT5G43990.17 40.337 771 350 19 5 749 3 689 1.06e-164 492
Msa0075150 AT5G43990.14 40.337 771 350 19 5 749 3 689 1.06e-164 492
Msa0075150 AT5G43990.15 40.130 770 353 18 5 749 26 712 3.68e-164 491
Msa0075150 AT5G43990.10 40.130 770 353 18 5 749 26 712 3.68e-164 491
Msa0075150 AT5G43990.8 39.691 713 322 19 63 749 10 640 4.45e-148 447
Msa0075150 AT5G43990.12 39.691 713 322 19 63 749 10 640 4.45e-148 447
Msa0075150 AT5G43990.6 39.691 713 322 19 63 749 10 640 4.45e-148 447
Msa0075150 AT5G43990.13 39.691 713 322 19 63 749 10 640 4.45e-148 447
Msa0075150 AT5G43990.7 39.799 696 325 17 63 749 10 620 6.47e-145 439
Msa0075150 AT3G04380.2 52.661 357 162 7 393 745 81 434 1.15e-126 386
Msa0075150 AT1G04050.3 54.416 351 150 6 406 752 281 625 1.78e-126 391
Msa0075150 AT1G04050.3 31.977 172 95 7 228 380 176 344 1.41e-11 68.6
Msa0075150 AT3G04380.1 53.602 347 154 7 403 745 118 461 2.32e-126 386
Msa0075150 AT3G04380.6 52.661 357 162 7 393 745 81 434 2.60e-126 385
Msa0075150 AT3G04380.3 53.602 347 154 7 403 745 102 445 3.08e-126 385
Msa0075150 AT3G04380.5 52.661 357 162 7 393 745 65 418 4.28e-126 384
Msa0075150 AT3G04380.4 53.602 347 154 7 403 745 118 461 5.36e-126 385
Msa0075150 AT1G04050.2 54.416 351 150 6 406 752 385 729 7.88e-126 393
Msa0075150 AT1G04050.2 31.977 172 95 7 228 380 280 448 1.21e-11 68.9
Msa0075150 AT1G04050.1 54.416 351 150 6 406 752 385 729 7.88e-126 393
Msa0075150 AT1G04050.1 31.977 172 95 7 228 380 280 448 1.21e-11 68.9
Msa0075150 AT2G23740.1 38.947 190 100 6 562 744 1193 1373 1.93e-28 123
Msa0075150 AT2G23740.3 38.947 190 100 6 562 744 1200 1380 2.11e-28 123
Msa0075150 AT2G23740.6 38.947 190 100 6 562 744 1200 1380 2.11e-28 123
Msa0075150 AT2G23740.2 38.947 190 100 6 562 744 1200 1380 2.11e-28 123
Msa0075150 AT1G73100.1 30.816 331 160 13 430 742 386 665 1.82e-27 119
Msa0075150 AT2G35160.5 29.206 315 152 11 430 741 507 753 1.75e-26 116
Msa0075150 AT2G35160.2 29.206 315 152 11 430 741 543 789 1.87e-26 116
Msa0075150 AT2G35160.3 29.206 315 152 11 430 741 543 789 1.87e-26 116
Msa0075150 AT2G35160.1 29.206 315 152 11 430 741 543 789 1.87e-26 116
Msa0075150 AT2G35160.4 29.206 315 152 11 430 741 543 789 1.87e-26 116
Msa0075150 AT2G22740.2 28.267 329 169 10 430 742 509 786 4.20e-25 112
Msa0075150 AT2G22740.1 28.267 329 169 10 430 742 509 786 4.20e-25 112
Msa0075150 AT5G04940.2 27.795 331 169 12 430 742 388 666 4.35e-24 108
Msa0075150 AT5G04940.1 27.795 331 169 12 430 742 388 666 4.35e-24 108
Msa0075150 AT3G03750.2 34.392 189 101 8 564 741 169 345 5.41e-22 99.0
Msa0075150 AT1G17770.1 32.836 201 117 7 558 742 491 689 8.97e-22 101
Msa0075150 AT2G23740.4 43.220 118 63 3 562 677 1200 1315 1.35e-20 98.2
Msa0075150 AT2G23740.5 43.220 118 63 3 562 677 1200 1315 1.35e-20 98.2
Msa0075150 AT4G13460.1 26.791 321 154 15 421 720 378 638 3.86e-18 89.4
Msa0075150 AT4G13460.2 26.791 321 154 15 421 720 378 638 3.86e-18 89.4
Msa0075150 AT2G33290.1 25.484 310 154 11 430 720 388 639 6.92e-16 82.4
Msa0075150 AT2G33290.3 25.484 310 154 11 430 720 388 639 6.92e-16 82.4
Msa0075150 AT2G33290.4 25.484 310 154 11 430 720 388 639 6.92e-16 82.4
Msa0075150 AT2G33290.2 25.484 310 154 11 430 720 388 639 6.92e-16 82.4
Msa0075150 AT2G24740.1 29.787 188 114 6 571 742 566 751 8.27e-15 79.0
Msa0075150 AT1G77300.1 28.311 219 111 10 535 742 980 1163 1.30e-14 79.0
Msa0075150 AT1G77300.2 28.311 219 111 10 535 742 980 1163 1.77e-14 78.6
Msa0075150 AT1G76710.2 28.492 179 96 6 569 741 72 224 3.60e-14 76.3
Msa0075150 AT1G76710.1 28.492 179 96 6 569 741 72 224 3.60e-14 76.3
Msa0075150 AT1G76710.4 28.492 179 96 6 569 741 72 224 4.74e-14 75.9
Msa0075150 AT1G76710.3 28.492 179 96 6 569 741 72 224 5.51e-14 75.9
Msa0075150 AT3G03750.1 28.947 190 94 7 564 741 169 329 3.47e-13 72.0

Find 196 sgRNAs with CRISPR-Local

Find 393 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCATGCGCTGCTATGTTTC+TGG 0.156141 1_2:-50241830 None:intergenic
CCTCTCATGCAACTCTTTAA+TGG 0.157207 1_2:-50240444 None:intergenic
AGTTACTTTGTATAGCTTTA+TGG 0.167226 1_2:+50242765 Msa0075150:three_prime_UTR
AAATGAATTAACCTTCATTT+TGG 0.184016 1_2:+50242819 Msa0075150:three_prime_UTR
CTATGTTTCTGGTGGTAAAA+AGG 0.198580 1_2:-50241819 None:intergenic
GAGCTGCAGCTCAGCTCTTC+AGG 0.210314 1_2:+50239109 Msa0075150:CDS
ACTACTAAACTGAGTGAATT+TGG 0.220484 1_2:-50239575 None:intergenic
AGAGAACTATAGAGCTTTAT+TGG 0.221245 1_2:+50237649 Msa0075150:CDS
TCATCAACGGGCTCAGATTT+AGG 0.222684 1_2:-50238225 None:intergenic
ACATTTCTCTATCTCGTATT+GGG 0.243654 1_2:+50239774 Msa0075150:CDS
TACTTCATGGATGCATGTTT+TGG 0.262174 1_2:+50242702 Msa0075150:three_prime_UTR
AACATGAAATGTGCTGAAAA+TGG 0.265651 1_2:+50240467 Msa0075150:CDS
GTTACTTTGTATAGCTTTAT+GGG 0.292742 1_2:+50242766 Msa0075150:three_prime_UTR
AACAGTTCACTGATTATAAA+TGG 0.304069 1_2:+50237493 Msa0075150:exon
CTCCAGGCAATGACAGAGTT+TGG 0.318416 1_2:+50237548 Msa0075150:CDS
CCACTTCTTTACGTGTGTTA+TGG 0.320200 1_2:-50239034 None:intergenic
TCTGGACACTCAATTTGAAT+TGG 0.327457 1_2:-50241659 None:intergenic
GAATAGCGCCTTAAGCTTGA+TGG 0.331994 1_2:-50238954 None:intergenic
CTCTGATGGGCTGGTGAAAA+GGG 0.332393 1_2:-50239458 None:intergenic
AACATTTCTCTATCTCGTAT+TGG 0.338243 1_2:+50239773 Msa0075150:CDS
TGTGCCTGTACATATAAAAC+TGG 0.340913 1_2:+50239851 Msa0075150:CDS
TTGAAAAGATTGAGATTAAG+AGG 0.343197 1_2:+50237985 Msa0075150:CDS
CATCTCGGAACACAAGGTTT+TGG 0.345064 1_2:-50239742 None:intergenic
CTCTTCAAGTGTCCTTTACA+TGG 0.346446 1_2:-50240019 None:intergenic
CATTGTGGGCAGTAAGGATT+TGG 0.349231 1_2:+50239364 Msa0075150:CDS
TACAGCTCAAGGCCTAATTA+AGG 0.350606 1_2:+50239889 Msa0075150:CDS
ATAGCTTTATGGGAAGTATT+AGG 0.354795 1_2:+50242776 Msa0075150:three_prime_UTR
GTCAAAGAGTGATGGTTGTT+TGG 0.362693 1_2:+50239994 Msa0075150:CDS
CTGGACACTCAATTTGAATT+GGG 0.363904 1_2:-50241658 None:intergenic
ACTAGGTCTGCGTTAATTGC+TGG 0.366002 1_2:+50242606 Msa0075150:CDS
GAAAGTTTATTAAAGAATGT+TGG 0.367343 1_2:+50240041 Msa0075150:CDS
TGCTTAGATGCAGCGTCCTT+TGG 0.374054 1_2:+50240560 Msa0075150:CDS
ATGGTGTTTCTGCAGGATTA+TGG 0.382711 1_2:+50242208 Msa0075150:intron
CACTCCGCATCCAGTAGAAC+TGG 0.383967 1_2:-50240503 None:intergenic
TGAGTAGGCATGCGGAAATC+TGG 0.394448 1_2:-50239134 None:intergenic
TTGTGGTCTCACCCAGGTCC+TGG 0.394751 1_2:+50242656 Msa0075150:three_prime_UTR
GCTCTGATGGGCTGGTGAAA+AGG 0.396124 1_2:-50239459 None:intergenic
ACCAGCCCATCAGAGCAGTT+TGG 0.397557 1_2:+50239466 Msa0075150:CDS
GATGACACTGCGTTGTTTCG+AGG 0.400594 1_2:-50238102 None:intergenic
TCCAGGCAATGACAGAGTTT+GGG 0.403416 1_2:+50237549 Msa0075150:CDS
TACTGGTTTCCGAGATGAAC+AGG 0.403963 1_2:+50239498 Msa0075150:CDS
TCTATGTGAGACTTCTTCAA+TGG 0.406075 1_2:-50238042 None:intergenic
CAGATGTTCTGATGCAAACT+TGG 0.408144 1_2:+50241628 Msa0075150:intron
ACAAGACCCAGCTTACTTCA+TGG 0.411349 1_2:+50242689 Msa0075150:three_prime_UTR
AAGAGAATAATCAAATTTCA+TGG 0.413531 1_2:+50239669 Msa0075150:CDS
GCATTTGTGTGTGAGTTTGC+TGG 0.417110 1_2:+50240410 Msa0075150:CDS
CAGCGCATGAAGAGCTCACT+TGG 0.418578 1_2:+50241842 Msa0075150:CDS
TCACACACAAATGCTCCTTT+TGG 0.419691 1_2:-50240401 None:intergenic
GCCATCAACCTCTGATTCCT+TGG 0.425867 1_2:-50239333 None:intergenic
ATCTACTTACCCAGTTCTAC+TGG 0.430711 1_2:+50240493 Msa0075150:CDS
TGGAATAACATACAACTTGC+AGG 0.432287 1_2:+50240111 Msa0075150:CDS
AGTCTACAGAAGATCGTATA+AGG 0.434173 1_2:+50239612 Msa0075150:CDS
TCCTGAAGCAAAAGTGAAAC+GGG 0.434933 1_2:+50237574 Msa0075150:CDS
CTATGTGAGACTTCTTCAAT+GGG 0.437903 1_2:-50238041 None:intergenic
CATCATCCAAACTGCTCTGA+TGG 0.438786 1_2:-50239472 None:intergenic
ATGGGGACTTCGTACCTTAG+AGG 0.440946 1_2:+50240373 Msa0075150:CDS
ATGCAGAACCATCAAGCTTA+AGG 0.443752 1_2:+50238946 Msa0075150:intron
CAAGCTTAAGGCGCTATTCA+AGG 0.444240 1_2:+50238958 Msa0075150:CDS
ACCTGGGTGAGACCACAAAA+TGG 0.445762 1_2:-50242651 None:intergenic
TCCAAACTGCTCTGATGGGC+TGG 0.448015 1_2:-50239467 None:intergenic
CAGTTTGGATGATGCTGTAC+TGG 0.448999 1_2:+50239481 Msa0075150:CDS
GAGGACAGTTGTTCCTGTAT+AGG 0.451056 1_2:+50239800 Msa0075150:CDS
ACGGGTTCTCACTCATCAAA+TGG 0.451201 1_2:+50239389 Msa0075150:CDS
TCCTTACTGCCCACAATGGC+GGG 0.451219 1_2:-50239359 None:intergenic
TCATAATCTTCCTCATCAAC+GGG 0.455912 1_2:-50238237 None:intergenic
TGGGAGCTTATTACCGTTGG+CGG 0.456705 1_2:+50242733 Msa0075150:three_prime_UTR
TCCCAAACTCTGTCATTGCC+TGG 0.460190 1_2:-50237550 None:intergenic
GATGGCACACCCGCCATTGT+GGG 0.460269 1_2:+50239350 Msa0075150:CDS
AACATTTAACGGAGCATCCT+CGG 0.461944 1_2:-50237947 None:intergenic
AGCTGCAGCTCAGCTCTTCA+GGG 0.466371 1_2:+50239110 Msa0075150:CDS
CAGTAAAAGCAATGCTGTTG+AGG 0.466634 1_2:-50239950 None:intergenic
TTGGATGCTATATTTGAAGA+AGG 0.467640 1_2:+50237668 Msa0075150:CDS
CAAGATGCAACTTCCTATAC+AGG 0.475226 1_2:-50239813 None:intergenic
CATGCATCCATGAAGTAAGC+TGG 0.477334 1_2:-50242696 None:intergenic
TAAGAAGCATGCGGTGATGC+AGG 0.478397 1_2:-50238189 None:intergenic
TGGGGTATGTAGTTGAAAGG+TGG 0.478541 1_2:-50239722 None:intergenic
TTTGGAGACACGGGATCCTC+CGG 0.478825 1_2:-50239557 None:intergenic
TGTGATAGCCTCTTCAGCTC+AGG 0.484761 1_2:+50239067 Msa0075150:CDS
AGAACAACTTCTAAAGATGA+TGG 0.485289 1_2:+50239157 Msa0075150:CDS
ACAGTTTGACAGGTTGATCA+TGG 0.487440 1_2:-50242246 None:intergenic
CGAGCAGATTCAACATTTAA+CGG 0.488022 1_2:-50237958 None:intergenic
ACCCGCCATTGTGGGCAGTA+AGG 0.490950 1_2:+50239358 Msa0075150:CDS
ACATGATAGTAGTAACGATC+TGG 0.492019 1_2:-50241677 None:intergenic
TTTAGAAGTTGTTCTTGAGT+AGG 0.492209 1_2:-50239149 None:intergenic
ATGGGGAAGAAGCTGAGCTA+GGG 0.492408 1_2:-50238023 None:intergenic
GTTACGACTCATCCAGGACC+TGG 0.498647 1_2:-50242668 None:intergenic
TACTTCTCCCTGAGCTGAAG+AGG 0.498970 1_2:-50239075 None:intergenic
GAAGAAGTCTCACATAGAAA+AGG 0.499568 1_2:+50238047 Msa0075150:CDS
TTCCTGAAGCAAAAGTGAAA+CGG 0.501547 1_2:+50237573 Msa0075150:CDS
GATGTTAGTGACCTTACAAA+AGG 0.503486 1_2:+50239644 Msa0075150:CDS
TGCGAGATGCTAGTTATGAC+AGG 0.503811 1_2:+50238157 Msa0075150:CDS
AATGGGGAAGAAGCTGAGCT+AGG 0.506879 1_2:-50238024 None:intergenic
TGATGGCACACCCGCCATTG+TGG 0.514482 1_2:+50239349 Msa0075150:CDS
ACATGAAATGTGCTGAAAAT+GGG 0.514519 1_2:+50240468 Msa0075150:CDS
CTCATAATCTTCCTCATCAA+CGG 0.516381 1_2:-50238238 None:intergenic
GGCAGTAAGGATTTGGACAC+GGG 0.517393 1_2:+50239371 Msa0075150:CDS
TTGCACTGGAACAGTTTGAC+AGG 0.517685 1_2:-50242256 None:intergenic
GAAAAGGACACAGCACTTGA+AGG 0.519631 1_2:+50238063 Msa0075150:CDS
TCTATCTCGTATTGGGGCTG+AGG 0.521876 1_2:+50239781 Msa0075150:CDS
TGCGTTAATTGCTGGATGAT+AGG 0.521904 1_2:+50242614 Msa0075150:exon
GGAAGAACAGATGGAGGCCG+AGG 0.523039 1_2:+50237930 Msa0075150:intron
TTGCTAGATTTATCAATCAC+AGG 0.526124 1_2:+50240588 Msa0075150:CDS
TCACTCTTTGACCTTTCAAG+TGG 0.526254 1_2:-50239983 None:intergenic
AGTTCTACTGGATGCGGAGT+GGG 0.529585 1_2:+50240505 Msa0075150:CDS
CACATCCGAAGGAAAAGGAT+GGG 0.533153 1_2:+50240355 Msa0075150:CDS
AATGTGGCAGTAAGTTCTGC+AGG 0.533366 1_2:+50242278 Msa0075150:CDS
ACTTACTGCCACATTTGCAC+TGG 0.535307 1_2:-50242270 None:intergenic
ATCATCCAAACTGCTCTGAT+GGG 0.536390 1_2:-50239471 None:intergenic
ATCAATTGTCCTGTTCATCT+CGG 0.538244 1_2:-50239507 None:intergenic
GCAAAGATTGTCCACTTGAA+AGG 0.541466 1_2:+50239972 Msa0075150:CDS
TGCATTCTAACATCACTTTG+TGG 0.547428 1_2:-50239533 None:intergenic
CAGAAGCATCTCGGAACACA+AGG 0.547625 1_2:-50239748 None:intergenic
TTACGTGTGTTATGGTGTGA+TGG 0.548330 1_2:-50239026 None:intergenic
CATTTCTCTATCTCGTATTG+GGG 0.549601 1_2:+50239775 Msa0075150:CDS
AAACTCTGTCATTGCCTGGA+GGG 0.550126 1_2:-50237546 None:intergenic
ATCCTTACTGCCCACAATGG+CGG 0.550791 1_2:-50239360 None:intergenic
TCACATCCGAAGGAAAAGGA+TGG 0.551509 1_2:+50240354 Msa0075150:CDS
AGGCGCTATTCAAGGAAGAA+TGG 0.557745 1_2:+50238966 Msa0075150:CDS
AGCAATTAACGCAGACCTAG+TGG 0.561560 1_2:-50242604 None:intergenic
CCATTAAAGAGTTGCATGAG+AGG 0.561929 1_2:+50240444 Msa0075150:CDS
TGAGCGGCGTCCCCTTGCAA+TGG 0.562017 1_2:+50238257 Msa0075150:CDS
TTAACGAAGGACCAAAATGA+AGG 0.563649 1_2:-50242830 None:intergenic
GGTATGTAGTTGAAAGGTGG+TGG 0.563966 1_2:-50239719 None:intergenic
GTTATGGTGTGATGGTGTCA+TGG 0.564381 1_2:-50239018 None:intergenic
AAGTGATGTTAGAATGCAGC+CGG 0.565115 1_2:+50239538 Msa0075150:CDS
TTATACGATCTTCTGTAGAC+TGG 0.565319 1_2:-50239610 None:intergenic
GGTCTTGTTACGACTCATCC+AGG 0.566145 1_2:-50242674 None:intergenic
AACTATAGCTCAACCGCCAA+CGG 0.566548 1_2:-50242746 None:intergenic
AGAGAATAATCAAATTTCAT+GGG 0.566667 1_2:+50239670 Msa0075150:CDS
AGTAAAAGCAATGCTGTTGA+GGG 0.566678 1_2:-50239949 None:intergenic
GTGATGGTGTCATGGAGACA+TGG 0.568469 1_2:-50239010 None:intergenic
ACCTTAGAGGAACTGCCAAA+AGG 0.569461 1_2:+50240386 Msa0075150:CDS
TGTTGGAGCAAATGTGGCTG+TGG 0.569633 1_2:+50240058 Msa0075150:CDS
GTGCCTGTACATATAAAACT+GGG 0.569930 1_2:+50239852 Msa0075150:CDS
AAATTTGCATATACAGCTCA+AGG 0.570666 1_2:+50239878 Msa0075150:CDS
CAGTGTCATCTGATGTGAAT+GGG 0.571710 1_2:+50238115 Msa0075150:CDS
TCCAAGGAATCAGAGGTTGA+TGG 0.572508 1_2:+50239332 Msa0075150:CDS
ATATAACCAGGAAGAACAGA+TGG 0.572965 1_2:+50237921 Msa0075150:intron
TCTGCCTTGGTTTCACCTCG+AGG 0.574171 1_2:+50239434 Msa0075150:CDS
ATCAAGCATAGATGTGTCCA+AGG 0.576306 1_2:+50239316 Msa0075150:CDS
ATGCATCCATGAAGTAAGCT+GGG 0.577153 1_2:-50242695 None:intergenic
TAAATCTGAGCCCGTTGATG+AGG 0.579697 1_2:+50238227 Msa0075150:CDS
TCTGATGGGCTGGTGAAAAG+GGG 0.580258 1_2:-50239457 None:intergenic
CCATAACACACGTAAAGAAG+TGG 0.582122 1_2:+50239034 Msa0075150:CDS
AAATGTTAACAGAAGCATCT+CGG 0.583016 1_2:-50239757 None:intergenic
GTGGGATTCAACATTTGTGA+AGG 0.586586 1_2:+50240523 Msa0075150:CDS
CTGAGTGAATTTGGAGACAC+GGG 0.587085 1_2:-50239566 None:intergenic
GTGATAGCCTCTTCAGCTCA+GGG 0.595212 1_2:+50239068 Msa0075150:CDS
AAATCTAGCAATGTTGCCAA+AGG 0.600969 1_2:-50240576 None:intergenic
GGGCAGTAAGGATTTGGACA+CGG 0.606855 1_2:+50239370 Msa0075150:CDS
GTCATAACTAGCATCTCGCA+TGG 0.608733 1_2:-50238154 None:intergenic
TTACCCAGTTCTACTGGATG+CGG 0.610406 1_2:+50240499 Msa0075150:CDS
AGATATATGTGATTGCATGT+TGG 0.610959 1_2:+50239244 Msa0075150:CDS
TCAAACGATAACTCACAAGA+AGG 0.613211 1_2:+50239281 Msa0075150:CDS
CTTGAAAGGTCAAAGAGTGA+TGG 0.617940 1_2:+50239986 Msa0075150:CDS
GCAGTGTCATCTGATGTGAA+TGG 0.620539 1_2:+50238114 Msa0075150:CDS
TCATAACTAGCATCTCGCAT+GGG 0.621862 1_2:-50238153 None:intergenic
AGATGTGTCCAAGGAATCAG+AGG 0.622003 1_2:+50239325 Msa0075150:CDS
ACATCCGAAGGAAAAGGATG+GGG 0.623345 1_2:+50240356 Msa0075150:CDS
GGTTGTTTGGAACCATGTAA+AGG 0.624624 1_2:+50240007 Msa0075150:CDS
CAGTTCTACTGGATGCGGAG+TGG 0.627446 1_2:+50240504 Msa0075150:CDS
AAACTGTTCCAGTGCAAATG+TGG 0.628078 1_2:+50242262 Msa0075150:CDS
CAAATCCTTACTGCCCACAA+TGG 0.629154 1_2:-50239363 None:intergenic
GCTGGTGAAAAGGGGCCTCG+AGG 0.629263 1_2:-50239449 None:intergenic
AGTTGTATGTTATTCCACGC+TGG 0.629403 1_2:-50240105 None:intergenic
AAAGAATGTTGGAGCAAATG+TGG 0.629844 1_2:+50240052 Msa0075150:CDS
GCGAGATGCTAGTTATGACA+GGG 0.630984 1_2:+50238158 Msa0075150:CDS
ATGCGCTGCTATGTTTCTGG+TGG 0.632146 1_2:-50241827 None:intergenic
TGGGGAAGAAGCTGAGCTAG+GGG 0.632319 1_2:-50238022 None:intergenic
AACGGGCTCAGATTTAGGTA+CGG 0.633960 1_2:-50238220 None:intergenic
TCTTCTGTAGACTGGTGATG+TGG 0.636889 1_2:-50239602 None:intergenic
TTACGACTCATCCAGGACCT+GGG 0.638285 1_2:-50242667 None:intergenic
CAAACTCTGTCATTGCCTGG+AGG 0.639593 1_2:-50237547 None:intergenic
ACTGATTATAAATGGCGCCA+AGG 0.643115 1_2:+50237501 Msa0075150:exon
GTTGTTCTTGAGTAGGCATG+CGG 0.647576 1_2:-50239142 None:intergenic
AGCGCATGAAGAGCTCACTT+GGG 0.648600 1_2:+50241843 Msa0075150:CDS
AATGGTGTTACTGAAAAGCA+AGG 0.651736 1_2:+50238984 Msa0075150:CDS
TGTCATCTGATGTGAATGGG+AGG 0.652442 1_2:+50238118 Msa0075150:CDS
TGATGGTGTCATGGAGACAT+GGG 0.657309 1_2:-50239009 None:intergenic
ACTGAGTGAATTTGGAGACA+CGG 0.658366 1_2:-50239567 None:intergenic
ACTCCGCATCCAGTAGAACT+GGG 0.662392 1_2:-50240502 None:intergenic
ACAACTTCTAAAGATGATGG+AGG 0.666072 1_2:+50239160 Msa0075150:CDS
GCCTGTACATATAAAACTGG+GGG 0.669381 1_2:+50239854 Msa0075150:CDS
GTTGGAGCAAATGTGGCTGT+GGG 0.672821 1_2:+50240059 Msa0075150:CDS
TGCCTGTACATATAAAACTG+GGG 0.672868 1_2:+50239853 Msa0075150:CDS
TAACCAGGAAGAACAGATGG+AGG 0.673605 1_2:+50237924 Msa0075150:intron
TGATGTTAGAATGCAGCCGG+AGG 0.679721 1_2:+50239541 Msa0075150:CDS
TGTGGCTGTGGGAAACAATG+TGG 0.681976 1_2:+50240070 Msa0075150:CDS
GTCATCTGATGTGAATGGGA+GGG 0.682522 1_2:+50238119 Msa0075150:CDS
AAGGACACAGCACTTGAAGG+CGG 0.696062 1_2:+50238066 Msa0075150:CDS
GGAAATCGCGTTATCCAGCG+TGG 0.696912 1_2:+50240091 Msa0075150:CDS
GTCAATTCATAAGAAGCATG+CGG 0.698287 1_2:-50238198 None:intergenic
GGGGCCTCGAGGTGAAACCA+AGG 0.711820 1_2:-50239438 None:intergenic
CGAGATGCTAGTTATGACAG+GGG 0.714402 1_2:+50238159 Msa0075150:CDS
TTGATGAGGAAGATTATGAG+CGG 0.719615 1_2:+50238241 Msa0075150:CDS
TATGTGAGACTTCTTCAATG+GGG 0.720248 1_2:-50238040 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTTTAATTTTTAAATTT+AGG + chr1_2:50240325-50240344 Msa0075150:intron 0.0%
!! TAAAAATTATGAATCAATAT+TGG - chr1_2:50240183-50240202 None:intergenic 10.0%
!! AAAGAAAAAAAAAAGATATT+TGG + chr1_2:50240926-50240945 Msa0075150:intron 10.0%
!! CATGTATTTATAATATTATA+TGG + chr1_2:50240972-50240991 Msa0075150:intron 10.0%
!! AAAAGAGTAAAAATTAAATA+CGG - chr1_2:50242574-50242593 None:intergenic 10.0%
!! ATGTATTATTGTATTATTTG+TGG + chr1_2:50238485-50238504 Msa0075150:intron 15.0%
!! TGTTGAAAAAGAAAAATAAT+TGG - chr1_2:50238850-50238869 None:intergenic 15.0%
!! ATAACATTATACTAATACAT+AGG - chr1_2:50240270-50240289 None:intergenic 15.0%
!!! AAAACATTTTAAAAATGTAC+CGG - chr1_2:50240296-50240315 None:intergenic 15.0%
!! TTAAAATAATTGGTATTAAG+TGG - chr1_2:50241234-50241253 None:intergenic 15.0%
!!! AAAATTTTATACAATATAGG+AGG - chr1_2:50241922-50241941 None:intergenic 15.0%
!!! GTGAAAATTTTATACAATAT+AGG - chr1_2:50241925-50241944 None:intergenic 15.0%
!!! ATAAAATTTTCACTTCTTTA+CGG + chr1_2:50241932-50241951 Msa0075150:intron 15.0%
!!! AGTTTTTATCAAACAACTTA+AGG - chr1_2:50237613-50237632 None:intergenic 20.0%
!!! TTAAGTTGTTTGATAAAAAC+TGG + chr1_2:50237612-50237631 Msa0075150:CDS 20.0%
!!! TAACATTCATAATTTTCTGT+TGG + chr1_2:50237833-50237852 Msa0075150:intron 20.0%
!! ATTATTGTATTATTTGTGGA+TGG + chr1_2:50238489-50238508 Msa0075150:intron 20.0%
!! AAGAGAATAATCAAATTTCA+TGG + chr1_2:50239669-50239688 Msa0075150:CDS 20.0%
!! AGAGAATAATCAAATTTCAT+GGG + chr1_2:50239670-50239689 Msa0075150:CDS 20.0%
!! GAAAGTTTATTAAAGAATGT+TGG + chr1_2:50240041-50240060 Msa0075150:CDS 20.0%
!!! AAACATTTTAAAAATGTACC+GGG - chr1_2:50240295-50240314 None:intergenic 20.0%
!!! TTTCCTTAGTTTGAATTTTA+GGG - chr1_2:50240649-50240668 None:intergenic 20.0%
!!! TTTTCCTTAGTTTGAATTTT+AGG - chr1_2:50240650-50240669 None:intergenic 20.0%
!! AAAAAAAAAAGATATTTGGC+TGG + chr1_2:50240930-50240949 Msa0075150:intron 20.0%
!! AAAAAAAAAGATATTTGGCT+GGG + chr1_2:50240931-50240950 Msa0075150:intron 20.0%
!!! AGAAAAATTTCTTTTCTCTT+CGG - chr1_2:50241074-50241093 None:intergenic 20.0%
!! GTTCAAACGATTAAAATAAT+TGG - chr1_2:50241244-50241263 None:intergenic 20.0%
!! TATTCCCATCTTTATAAAAT+TGG + chr1_2:50241364-50241383 Msa0075150:intron 20.0%
!! ATTCCCATCTTTATAAAATT+GGG + chr1_2:50241365-50241384 Msa0075150:intron 20.0%
!!! AAACCCAATTTTATAAAGAT+GGG - chr1_2:50241371-50241390 None:intergenic 20.0%
!!! TAAACCCAATTTTATAAAGA+TGG - chr1_2:50241372-50241391 None:intergenic 20.0%
!!! GTAAGTTTTGTTATGTAATA+TGG + chr1_2:50241865-50241884 Msa0075150:intron 20.0%
!!! ACTTATTTTCTAGTTTTTCA+TGG + chr1_2:50242028-50242047 Msa0075150:intron 20.0%
!!! TAAACAGAAGCTTATTTTTA+TGG + chr1_2:50242189-50242208 Msa0075150:intron 20.0%
!!! GTTAATTCATTTGTCTTTTT+TGG - chr1_2:50242811-50242830 None:intergenic 20.0%
!!! AAATGAATTAACCTTCATTT+TGG + chr1_2:50242819-50242838 Msa0075150:three_prime_UTR 20.0%
!! AACAGTTCACTGATTATAAA+TGG + chr1_2:50237493-50237512 Msa0075150:exon 25.0%
!!! ATTGTTGGATTTTATTTGAC+AGG + chr1_2:50237770-50237789 Msa0075150:intron 25.0%
!! CTTAATCTCAATCTTTTCAA+AGG - chr1_2:50237985-50238004 None:intergenic 25.0%
! TTGAAAAGATTGAGATTAAG+AGG + chr1_2:50237985-50238004 Msa0075150:CDS 25.0%
! TTTGACATCTTAGTTGTAAT+TGG + chr1_2:50238328-50238347 Msa0075150:intron 25.0%
!! TTATTCTTCTTTTCAAACCA+TGG + chr1_2:50238409-50238428 Msa0075150:intron 25.0%
! AGAAACTCATAAATCAGTAA+AGG - chr1_2:50238752-50238771 None:intergenic 25.0%
!! TTTTTCCGACAGAAAAATTT+GGG - chr1_2:50239217-50239236 None:intergenic 25.0%
!! ATTTTTCCGACAGAAAAATT+TGG - chr1_2:50239218-50239237 None:intergenic 25.0%
! CCAAAAATTCTTCCTTAATT+AGG - chr1_2:50239904-50239923 None:intergenic 25.0%
!! CCTAATTAAGGAAGAATTTT+TGG + chr1_2:50239901-50239920 Msa0075150:CDS 25.0%
!! AAAATGTCTTTGTTTACTAG+TGG - chr1_2:50240158-50240177 None:intergenic 25.0%
! TATACTAATACATAGGAACT+TGG - chr1_2:50240263-50240282 None:intergenic 25.0%
! ATTAGTATAATGTTATTCCC+CGG + chr1_2:50240274-50240293 Msa0075150:intron 25.0%
!!! AACATTTTAAAAATGTACCG+GGG - chr1_2:50240294-50240313 None:intergenic 25.0%
! ACAATAACTTGAGTTTAATG+TGG + chr1_2:50241001-50241020 Msa0075150:intron 25.0%
! AAGGATATTTAAACAGTTTG+GGG - chr1_2:50241292-50241311 None:intergenic 25.0%
! CAAGGATATTTAAACAGTTT+GGG - chr1_2:50241293-50241312 None:intergenic 25.0%
! TCAAGGATATTTAAACAGTT+TGG - chr1_2:50241294-50241313 None:intergenic 25.0%
! ATTATTACTTATCTCATAGC+TGG + chr1_2:50241429-50241448 Msa0075150:intron 25.0%
!!! TGAAGGTTTTTTGGTTATTT+AGG + chr1_2:50241580-50241599 Msa0075150:intron 25.0%
! CAGTTGGGATAATTTATTTA+TGG + chr1_2:50242001-50242020 Msa0075150:intron 25.0%
! TAAGAAATGCTTATGTACTT+TGG + chr1_2:50242060-50242079 Msa0075150:intron 25.0%
! AAGAAATGCTTATGTACTTT+GGG + chr1_2:50242061-50242080 Msa0075150:intron 25.0%
! AGTAAACTACAAAAATGAAC+AGG - chr1_2:50242129-50242148 None:intergenic 25.0%
!! ATTTACTTTGTTGTATCACT+TGG + chr1_2:50242425-50242444 Msa0075150:intron 25.0%
!! TTTACTTTGTTGTATCACTT+GGG + chr1_2:50242426-50242445 Msa0075150:intron 25.0%
! ACGTTATTAAACAATCCAAA+AGG - chr1_2:50242466-50242485 None:intergenic 25.0%
!! AATTTTTACTCTTTTGATGC+AGG + chr1_2:50242579-50242598 Msa0075150:intron 25.0%
!!! TGCATGTTTTGGTTTTTTTT+TGG + chr1_2:50242713-50242732 Msa0075150:three_prime_UTR 25.0%
!!! GCATGTTTTGGTTTTTTTTT+GGG + chr1_2:50242714-50242733 Msa0075150:three_prime_UTR 25.0%
!! AGTTACTTTGTATAGCTTTA+TGG + chr1_2:50242765-50242784 Msa0075150:three_prime_UTR 25.0%
!!! GTTACTTTGTATAGCTTTAT+GGG + chr1_2:50242766-50242785 Msa0075150:three_prime_UTR 25.0%
! AGAGAACTATAGAGCTTTAT+TGG + chr1_2:50237649-50237668 Msa0075150:CDS 30.0%
TTGGATGCTATATTTGAAGA+AGG + chr1_2:50237668-50237687 Msa0075150:CDS 30.0%
TGCAAACTTACTTCTATTGT+TGG + chr1_2:50237755-50237774 Msa0075150:intron 30.0%
!! TTGTTTTTCTTTTGTGGTTC+TGG - chr1_2:50237798-50237817 None:intergenic 30.0%
!!! ACTCTCTTGTTTTTCTTTTG+TGG - chr1_2:50237804-50237823 None:intergenic 30.0%
! TTCTGCATTTTCATATAACC+AGG + chr1_2:50237909-50237928 Msa0075150:intron 30.0%
TTAGTTGTAATTGGCATGTT+TGG + chr1_2:50238337-50238356 Msa0075150:intron 30.0%
CATTTAGCAAAACCATAGTT+GGG - chr1_2:50238468-50238487 None:intergenic 30.0%
ACATTTAGCAAAACCATAGT+TGG - chr1_2:50238469-50238488 None:intergenic 30.0%
AACATGATGCAATTATGCAA+TGG - chr1_2:50238657-50238676 None:intergenic 30.0%
AGTTTGCATAAGATACTCTA+TGG + chr1_2:50238776-50238795 Msa0075150:intron 30.0%
AAATAATTGGTCAGATTCAG+AGG - chr1_2:50238837-50238856 None:intergenic 30.0%
TTTAGAAGTTGTTCTTGAGT+AGG - chr1_2:50239152-50239171 None:intergenic 30.0%
! AGAACAACTTCTAAAGATGA+TGG + chr1_2:50239157-50239176 Msa0075150:CDS 30.0%
AGATATATGTGATTGCATGT+TGG + chr1_2:50239244-50239263 Msa0075150:CDS 30.0%
AGGCAGAAAAAGAATTAACT+TGG - chr1_2:50239421-50239440 None:intergenic 30.0%
! AGTTAATTCTTTTTCTGCCT+TGG + chr1_2:50239421-50239440 Msa0075150:CDS 30.0%
ACTACTAAACTGAGTGAATT+TGG - chr1_2:50239578-50239597 None:intergenic 30.0%
! TATTCTCTTCTCCTTTTGTA+AGG - chr1_2:50239658-50239677 None:intergenic 30.0%
!! AAATGTTAACAGAAGCATCT+CGG - chr1_2:50239760-50239779 None:intergenic 30.0%
AACATTTCTCTATCTCGTAT+TGG + chr1_2:50239773-50239792 Msa0075150:CDS 30.0%
ACATTTCTCTATCTCGTATT+GGG + chr1_2:50239774-50239793 Msa0075150:CDS 30.0%
AAATTTGCATATACAGCTCA+AGG + chr1_2:50239878-50239897 Msa0075150:CDS 30.0%
AACATGAAATGTGCTGAAAA+TGG + chr1_2:50240467-50240486 Msa0075150:CDS 30.0%
ACATGAAATGTGCTGAAAAT+GGG + chr1_2:50240468-50240487 Msa0075150:CDS 30.0%
TTGCTAGATTTATCAATCAC+AGG + chr1_2:50240588-50240607 Msa0075150:CDS 30.0%
ATTTCTCACCTATTGTTTCA+AGG + chr1_2:50240617-50240636 Msa0075150:intron 30.0%
ACTAAGGAAAACAGAGAAAT+AGG + chr1_2:50240659-50240678 Msa0075150:intron 30.0%
AGGACATAACAATTGATATC+CGG + chr1_2:50240682-50240701 Msa0075150:intron 30.0%
ACAATTGATATCCGGAAAAA+TGG + chr1_2:50240690-50240709 Msa0075150:intron 30.0%
CAATTGATATCCGGAAAAAT+GGG + chr1_2:50240691-50240710 Msa0075150:intron 30.0%
! AAAAGTGCAACCAAGTAATA+GGG - chr1_2:50240778-50240797 None:intergenic 30.0%
TTATATGAGATTGCCAACAT+AGG + chr1_2:50240854-50240873 Msa0075150:intron 30.0%
TATGATTAAATATTCCTCCC+TGG - chr1_2:50240889-50240908 None:intergenic 30.0%
TTACATATGAGCATAGTTTG+AGG - chr1_2:50241204-50241223 None:intergenic 30.0%
! TATTTAAACAGTTTGGGGTA+GGG - chr1_2:50241287-50241306 None:intergenic 30.0%
! ATATTTAAACAGTTTGGGGT+AGG - chr1_2:50241288-50241307 None:intergenic 30.0%
!!! GCAAATGTTTGAAGGTTTTT+TGG + chr1_2:50241571-50241590 Msa0075150:intron 30.0%
CAGATTAGTATAACAACAGA+AGG - chr1_2:50241747-50241766 None:intergenic 30.0%
! TTGCAAAACATCAAAAGCAT+TGG - chr1_2:50241787-50241806 None:intergenic 30.0%
!! TATGTTTCTGGTGGTAAAAA+GGG - chr1_2:50241821-50241840 None:intergenic 30.0%
!!! ATGAAATTTTCTAGCTCACA+TGG + chr1_2:50241894-50241913 Msa0075150:intron 30.0%
!!! TGAAATTTTCTAGCTCACAT+GGG + chr1_2:50241895-50241914 Msa0075150:intron 30.0%
AACAAACGATTAACACAGTT+GGG + chr1_2:50241986-50242005 Msa0075150:intron 30.0%
CTCAGTATAACCTTACTATA+TGG - chr1_2:50242098-50242117 None:intergenic 30.0%
CATATAGTAAGGTTATACTG+AGG + chr1_2:50242096-50242115 Msa0075150:intron 30.0%
!! TATTTTTATGGTGTTTCTGC+AGG + chr1_2:50242201-50242220 Msa0075150:intron 30.0%
! TGGATTGATAGTTGTTGAAA+AGG + chr1_2:50242360-50242379 Msa0075150:intron 30.0%
!! ATAGCTTTATGGGAAGTATT+AGG + chr1_2:50242776-50242795 Msa0075150:three_prime_UTR 30.0%
TTCCTGAAGCAAAAGTGAAA+CGG + chr1_2:50237573-50237592 Msa0075150:CDS 35.0%
TAAAAACTGGCAACTTATCG+AGG + chr1_2:50237625-50237644 Msa0075150:CDS 35.0%
ATATAACCAGGAAGAACAGA+TGG + chr1_2:50237921-50237940 Msa0075150:intron 35.0%
CGAGCAGATTCAACATTTAA+CGG - chr1_2:50237961-50237980 None:intergenic 35.0%
TATGTGAGACTTCTTCAATG+GGG - chr1_2:50238043-50238062 None:intergenic 35.0%
CTATGTGAGACTTCTTCAAT+GGG - chr1_2:50238044-50238063 None:intergenic 35.0%
TCTATGTGAGACTTCTTCAA+TGG - chr1_2:50238045-50238064 None:intergenic 35.0%
GAAGAAGTCTCACATAGAAA+AGG + chr1_2:50238047-50238066 Msa0075150:CDS 35.0%
! GTCAATTCATAAGAAGCATG+CGG - chr1_2:50238201-50238220 None:intergenic 35.0%
TCATAATCTTCCTCATCAAC+GGG - chr1_2:50238240-50238259 None:intergenic 35.0%
CTCATAATCTTCCTCATCAA+CGG - chr1_2:50238241-50238260 None:intergenic 35.0%
TTGATGAGGAAGATTATGAG+CGG + chr1_2:50238241-50238260 Msa0075150:CDS 35.0%
ATAGTTCATTGAATACCAGG+GGG - chr1_2:50238285-50238304 None:intergenic 35.0%
GATAGTTCATTGAATACCAG+GGG - chr1_2:50238286-50238305 None:intergenic 35.0%
GGATAGTTCATTGAATACCA+GGG - chr1_2:50238287-50238306 None:intergenic 35.0%
TGAGTTTGAATCACAATCCA+TGG - chr1_2:50238429-50238448 None:intergenic 35.0%
GCTTGCTTGCATATTGTTTA+TGG - chr1_2:50238730-50238749 None:intergenic 35.0%
TGCATAAGATACTCTATGGT+AGG + chr1_2:50238780-50238799 Msa0075150:intron 35.0%
CGAAAGAACGAAATTGAAAG+TGG - chr1_2:50238881-50238900 None:intergenic 35.0%
!! AATGGTGTTACTGAAAAGCA+AGG + chr1_2:50238984-50239003 Msa0075150:CDS 35.0%
! ACAACTTCTAAAGATGATGG+AGG + chr1_2:50239160-50239179 Msa0075150:CDS 35.0%
! ATCGACCCAAATTTTTCTGT+CGG + chr1_2:50239209-50239228 Msa0075150:CDS 35.0%
TCAAACGATAACTCACAAGA+AGG + chr1_2:50239281-50239300 Msa0075150:CDS 35.0%
ATCAATTGTCCTGTTCATCT+CGG - chr1_2:50239510-50239529 None:intergenic 35.0%
TGCATTCTAACATCACTTTG+TGG - chr1_2:50239536-50239555 None:intergenic 35.0%
TTATACGATCTTCTGTAGAC+TGG - chr1_2:50239613-50239632 None:intergenic 35.0%
AGTCTACAGAAGATCGTATA+AGG + chr1_2:50239612-50239631 Msa0075150:CDS 35.0%
GATGTTAGTGACCTTACAAA+AGG + chr1_2:50239644-50239663 Msa0075150:CDS 35.0%
!!! TTTTGGGGTATGTAGTTGAA+AGG - chr1_2:50239728-50239747 None:intergenic 35.0%
CATTTCTCTATCTCGTATTG+GGG + chr1_2:50239775-50239794 Msa0075150:CDS 35.0%
TGTGCCTGTACATATAAAAC+TGG + chr1_2:50239851-50239870 Msa0075150:CDS 35.0%
GTGCCTGTACATATAAAACT+GGG + chr1_2:50239852-50239871 Msa0075150:CDS 35.0%
TGCCTGTACATATAAAACTG+GGG + chr1_2:50239853-50239872 Msa0075150:CDS 35.0%
AGTAAAAGCAATGCTGTTGA+GGG - chr1_2:50239952-50239971 None:intergenic 35.0%
AAAGAATGTTGGAGCAAATG+TGG + chr1_2:50240052-50240071 Msa0075150:CDS 35.0%
TGGAATAACATACAACTTGC+AGG + chr1_2:50240111-50240130 Msa0075150:CDS 35.0%
ATGTCAAGTTATGTATCTGC+AGG + chr1_2:50240236-50240255 Msa0075150:intron 35.0%
! TAGGTATTTTTCACATCCGA+AGG + chr1_2:50240344-50240363 Msa0075150:intron 35.0%
! TTTTTCACATCCGAAGGAAA+AGG + chr1_2:50240350-50240369 Msa0075150:CDS 35.0%
AAATCTAGCAATGTTGCCAA+AGG - chr1_2:50240579-50240598 None:intergenic 35.0%
GCACCCTAAAATTCAAACTA+AGG + chr1_2:50240643-50240662 Msa0075150:intron 35.0%
AAGGAAAACAGAGAAATAGG+AGG + chr1_2:50240662-50240681 Msa0075150:intron 35.0%
!! TTTGTCTTCTCCCATTTTTC+CGG - chr1_2:50240704-50240723 None:intergenic 35.0%
AAAATGGGAGAAGACAAAGT+AGG + chr1_2:50240706-50240725 Msa0075150:intron 35.0%
AGGACATAACCATTGATATC+CGG + chr1_2:50240729-50240748 Msa0075150:intron 35.0%
ACCATTGATATCCGGAAAAA+TGG + chr1_2:50240737-50240756 Msa0075150:intron 35.0%
!! TCCATTTTTCCGGATATCAA+TGG - chr1_2:50240741-50240760 None:intergenic 35.0%
ATTGATATCCGGAAAAATGG+AGG + chr1_2:50240693-50240712 Msa0075150:intron 35.0%
!! AACTATGTCCTCCATTTTTC+CGG - chr1_2:50240751-50240770 None:intergenic 35.0%
GAAAAATGGAGGACATAGTT+GGG + chr1_2:50240751-50240770 Msa0075150:intron 35.0%
! GAAAAGTGCAACCAAGTAAT+AGG - chr1_2:50240779-50240798 None:intergenic 35.0%
AAGGAAGGTAAATCAGATCA+AGG - chr1_2:50241311-50241330 None:intergenic 35.0%
GATAGATAAACAGTTATGCG+AGG - chr1_2:50241340-50241359 None:intergenic 35.0%
CTGGACACTCAATTTGAATT+GGG - chr1_2:50241661-50241680 None:intergenic 35.0%
TCTGGACACTCAATTTGAAT+TGG - chr1_2:50241662-50241681 None:intergenic 35.0%
ACATGATAGTAGTAACGATC+TGG - chr1_2:50241680-50241699 None:intergenic 35.0%
! CTTTTCAGACTTCAAGGATT+AGG - chr1_2:50241712-50241731 None:intergenic 35.0%
! AAACAGCTTTTCAGACTTCA+AGG - chr1_2:50241718-50241737 None:intergenic 35.0%
!! CTATGTTTCTGGTGGTAAAA+AGG - chr1_2:50241822-50241841 None:intergenic 35.0%
GAACAAACGATTAACACAGT+TGG + chr1_2:50241985-50242004 Msa0075150:intron 35.0%
AAATGCTTATGTACTTTGGG+TGG + chr1_2:50242064-50242083 Msa0075150:intron 35.0%
ATAGTAAGGTTATACTGAGG+AGG + chr1_2:50242099-50242118 Msa0075150:intron 35.0%
ATATGAAGCGATCAAACAGT+AGG + chr1_2:50242302-50242321 Msa0075150:intron 35.0%
!! AACTTGTTCTACTCTTTTGC+TGG + chr1_2:50242340-50242359 Msa0075150:intron 35.0%
CTTATAGCTTATGCTCTGAT+TGG + chr1_2:50242487-50242506 Msa0075150:intron 35.0%
CGGAAATCATGCATCAATAA+TGG - chr1_2:50242554-50242573 None:intergenic 35.0%
! TACTTCATGGATGCATGTTT+TGG + chr1_2:50242702-50242721 Msa0075150:three_prime_UTR 35.0%
ACTGATTATAAATGGCGCCA+AGG + chr1_2:50237501-50237520 Msa0075150:exon 40.0%
TCCTGAAGCAAAAGTGAAAC+GGG + chr1_2:50237574-50237593 Msa0075150:CDS 40.0%
! TGAAGAAGGCGATGATTTTG+AGG + chr1_2:50237682-50237701 Msa0075150:CDS 40.0%
! AACATTTAACGGAGCATCCT+CGG - chr1_2:50237950-50237969 None:intergenic 40.0%
CAGTGTCATCTGATGTGAAT+GGG + chr1_2:50238115-50238134 Msa0075150:CDS 40.0%
TCATAACTAGCATCTCGCAT+GGG - chr1_2:50238156-50238175 None:intergenic 40.0%
GGGATAGTTCATTGAATACC+AGG - chr1_2:50238288-50238307 None:intergenic 40.0%
TTGTCAGCTGAAACTGATAG+AGG + chr1_2:50238675-50238694 Msa0075150:intron 40.0%
!! GGCACTGCTTGTATTTTAGA+AGG + chr1_2:50238801-50238820 Msa0075150:intron 40.0%
ATGCAGAACCATCAAGCTTA+AGG + chr1_2:50238946-50238965 Msa0075150:intron 40.0%
TTACGTGTGTTATGGTGTGA+TGG - chr1_2:50239029-50239048 None:intergenic 40.0%
CCACTTCTTTACGTGTGTTA+TGG - chr1_2:50239037-50239056 None:intergenic 40.0%
CCATAACACACGTAAAGAAG+TGG + chr1_2:50239034-50239053 Msa0075150:CDS 40.0%
ATCAAGCATAGATGTGTCCA+AGG + chr1_2:50239316-50239335 Msa0075150:CDS 40.0%
ATCATCCAAACTGCTCTGAT+GGG - chr1_2:50239474-50239493 None:intergenic 40.0%
AAGTGATGTTAGAATGCAGC+CGG + chr1_2:50239538-50239557 Msa0075150:CDS 40.0%
ACTGAGTGAATTTGGAGACA+CGG - chr1_2:50239570-50239589 None:intergenic 40.0%
! ATCTCGGAACACAAGGTTTT+GGG - chr1_2:50239744-50239763 None:intergenic 40.0%
CAAGATGCAACTTCCTATAC+AGG - chr1_2:50239816-50239835 None:intergenic 40.0%
GCCTGTACATATAAAACTGG+GGG + chr1_2:50239854-50239873 Msa0075150:CDS 40.0%
TACAGCTCAAGGCCTAATTA+AGG + chr1_2:50239889-50239908 Msa0075150:CDS 40.0%
CAGTAAAAGCAATGCTGTTG+AGG - chr1_2:50239953-50239972 None:intergenic 40.0%
GCAAAGATTGTCCACTTGAA+AGG + chr1_2:50239972-50239991 Msa0075150:CDS 40.0%
TCACTCTTTGACCTTTCAAG+TGG - chr1_2:50239986-50240005 None:intergenic 40.0%
CTTGAAAGGTCAAAGAGTGA+TGG + chr1_2:50239986-50240005 Msa0075150:CDS 40.0%
GTCAAAGAGTGATGGTTGTT+TGG + chr1_2:50239994-50240013 Msa0075150:CDS 40.0%
! GGTTGTTTGGAACCATGTAA+AGG + chr1_2:50240007-50240026 Msa0075150:CDS 40.0%
CTCTTCAAGTGTCCTTTACA+TGG - chr1_2:50240022-50240041 None:intergenic 40.0%
AGTTGTATGTTATTCCACGC+TGG - chr1_2:50240108-50240127 None:intergenic 40.0%
! TCACACACAAATGCTCCTTT+TGG - chr1_2:50240404-50240423 None:intergenic 40.0%
CCTCTCATGCAACTCTTTAA+TGG - chr1_2:50240447-50240466 None:intergenic 40.0%
CCATTAAAGAGTTGCATGAG+AGG + chr1_2:50240444-50240463 Msa0075150:CDS 40.0%
ATCTACTTACCCAGTTCTAC+TGG + chr1_2:50240493-50240512 Msa0075150:CDS 40.0%
GTGGGATTCAACATTTGTGA+AGG + chr1_2:50240523-50240542 Msa0075150:CDS 40.0%
CTCACCTATTGTTTCAAGGT+TGG + chr1_2:50240621-50240640 Msa0075150:intron 40.0%
GGAAAAATGGAGGACATAGT+TGG + chr1_2:50240750-50240769 Msa0075150:intron 40.0%
ATAGTTGGGACCCTATTACT+TGG + chr1_2:50240765-50240784 Msa0075150:intron 40.0%
TATGAGATTGCCAACATAGG+AGG + chr1_2:50240857-50240876 Msa0075150:intron 40.0%
AACATAGGAGGACATAACCA+GGG + chr1_2:50240869-50240888 Msa0075150:intron 40.0%
CTGGGATGTTTCATCAAAGT+TGG + chr1_2:50240949-50240968 Msa0075150:intron 40.0%
CAGACTCATCTAGTGGAAAA+AGG - chr1_2:50241171-50241190 None:intergenic 40.0%
ACTTCTGCCAAATAGTTCCT+CGG + chr1_2:50241549-50241568 Msa0075150:intron 40.0%
ACATTTGCCGAGGAACTATT+TGG - chr1_2:50241559-50241578 None:intergenic 40.0%
AAACCTTCAAACATTTGCCG+AGG - chr1_2:50241569-50241588 None:intergenic 40.0%
CAGATGTTCTGATGCAAACT+TGG + chr1_2:50241628-50241647 Msa0075150:intron 40.0%
GGATAGCAGACCATATAGTA+AGG + chr1_2:50242085-50242104 Msa0075150:intron 40.0%
! ATGGTGTTTCTGCAGGATTA+TGG + chr1_2:50242208-50242227 Msa0075150:intron 40.0%
!! ACAGTTTGACAGGTTGATCA+TGG - chr1_2:50242249-50242268 None:intergenic 40.0%
AAACTGTTCCAGTGCAAATG+TGG + chr1_2:50242262-50242281 Msa0075150:CDS 40.0%
ATCCAATTTGACATGTGTCG+TGG - chr1_2:50242386-50242405 None:intergenic 40.0%
! ACTTTGTTGTATCACTTGGG+AGG + chr1_2:50242429-50242448 Msa0075150:intron 40.0%
! GAGGCAACTTATTTGCCTTT+TGG + chr1_2:50242448-50242467 Msa0075150:intron 40.0%
ATCAATAATGGCGAAAGTGG+TGG - chr1_2:50242542-50242561 None:intergenic 40.0%
TGCATCAATAATGGCGAAAG+TGG - chr1_2:50242545-50242564 None:intergenic 40.0%
TGCGTTAATTGCTGGATGAT+AGG + chr1_2:50242614-50242633 Msa0075150:exon 40.0%
! TGCTGCATTGAACCATTTTG+TGG + chr1_2:50242639-50242658 Msa0075150:three_prime_UTR 40.0%
ATGCATCCATGAAGTAAGCT+GGG - chr1_2:50242698-50242717 None:intergenic 40.0%
!! TTTTGGGAGCTTATTACCGT+TGG + chr1_2:50242730-50242749 Msa0075150:three_prime_UTR 40.0%
!!! GCTATTTTTGGATTGGGCCT+TGG - chr1_2:50237521-50237540 None:intergenic 45.0%
GCCCAATCCAAAAATAGCAG+CGG + chr1_2:50237523-50237542 Msa0075150:CDS 45.0%
!!! GCCGCTGCTATTTTTGGATT+GGG - chr1_2:50237527-50237546 None:intergenic 45.0%
AAACTCTGTCATTGCCTGGA+GGG - chr1_2:50237549-50237568 None:intergenic 45.0%
TCCAGGCAATGACAGAGTTT+GGG + chr1_2:50237549-50237568 Msa0075150:CDS 45.0%
TAACCAGGAAGAACAGATGG+AGG + chr1_2:50237924-50237943 Msa0075150:intron 45.0%
GAAAAGGACACAGCACTTGA+AGG + chr1_2:50238063-50238082 Msa0075150:CDS 45.0%
GCAGTGTCATCTGATGTGAA+TGG + chr1_2:50238114-50238133 Msa0075150:CDS 45.0%
TGTCATCTGATGTGAATGGG+AGG + chr1_2:50238118-50238137 Msa0075150:CDS 45.0%
GTCATCTGATGTGAATGGGA+GGG + chr1_2:50238119-50238138 Msa0075150:CDS 45.0%
GTCATAACTAGCATCTCGCA+TGG - chr1_2:50238157-50238176 None:intergenic 45.0%
TGCGAGATGCTAGTTATGAC+AGG + chr1_2:50238157-50238176 Msa0075150:CDS 45.0%
GCGAGATGCTAGTTATGACA+GGG + chr1_2:50238158-50238177 Msa0075150:CDS 45.0%
CGAGATGCTAGTTATGACAG+GGG + chr1_2:50238159-50238178 Msa0075150:CDS 45.0%
! AACGGGCTCAGATTTAGGTA+CGG - chr1_2:50238223-50238242 None:intergenic 45.0%
! TCATCAACGGGCTCAGATTT+AGG - chr1_2:50238228-50238247 None:intergenic 45.0%
TAAATCTGAGCCCGTTGATG+AGG + chr1_2:50238227-50238246 Msa0075150:CDS 45.0%
GAATAGCGCCTTAAGCTTGA+TGG - chr1_2:50238957-50238976 None:intergenic 45.0%
! CAAGCTTAAGGCGCTATTCA+AGG + chr1_2:50238958-50238977 Msa0075150:CDS 45.0%
AGGCGCTATTCAAGGAAGAA+TGG + chr1_2:50238966-50238985 Msa0075150:CDS 45.0%
!! TGATGGTGTCATGGAGACAT+GGG - chr1_2:50239012-50239031 None:intergenic 45.0%
! GTTATGGTGTGATGGTGTCA+TGG - chr1_2:50239021-50239040 None:intergenic 45.0%
GTTGTTCTTGAGTAGGCATG+CGG - chr1_2:50239145-50239164 None:intergenic 45.0%
AGATGTGTCCAAGGAATCAG+AGG + chr1_2:50239325-50239344 Msa0075150:CDS 45.0%
TCCAAGGAATCAGAGGTTGA+TGG + chr1_2:50239332-50239351 Msa0075150:CDS 45.0%
CAAATCCTTACTGCCCACAA+TGG - chr1_2:50239366-50239385 None:intergenic 45.0%
CATTGTGGGCAGTAAGGATT+TGG + chr1_2:50239364-50239383 Msa0075150:CDS 45.0%
ACGGGTTCTCACTCATCAAA+TGG + chr1_2:50239389-50239408 Msa0075150:CDS 45.0%
CATCATCCAAACTGCTCTGA+TGG - chr1_2:50239475-50239494 None:intergenic 45.0%
CAGTTTGGATGATGCTGTAC+TGG + chr1_2:50239481-50239500 Msa0075150:CDS 45.0%
!! TACTGGTTTCCGAGATGAAC+AGG + chr1_2:50239498-50239517 Msa0075150:CDS 45.0%
CTGAGTGAATTTGGAGACAC+GGG - chr1_2:50239569-50239588 None:intergenic 45.0%
! TCTTCTGTAGACTGGTGATG+TGG - chr1_2:50239605-50239624 None:intergenic 45.0%
GGTATGTAGTTGAAAGGTGG+TGG - chr1_2:50239722-50239741 None:intergenic 45.0%
TGGGGTATGTAGTTGAAAGG+TGG - chr1_2:50239725-50239744 None:intergenic 45.0%
! TCTCGGAACACAAGGTTTTG+GGG - chr1_2:50239743-50239762 None:intergenic 45.0%
! CATCTCGGAACACAAGGTTT+TGG - chr1_2:50239745-50239764 None:intergenic 45.0%
GAGGACAGTTGTTCCTGTAT+AGG + chr1_2:50239800-50239819 Msa0075150:CDS 45.0%
!! GCCCCCAGTTTTATATGTAC+AGG - chr1_2:50239858-50239877 None:intergenic 45.0%
TCACATCCGAAGGAAAAGGA+TGG + chr1_2:50240354-50240373 Msa0075150:CDS 45.0%
CACATCCGAAGGAAAAGGAT+GGG + chr1_2:50240355-50240374 Msa0075150:CDS 45.0%
ACATCCGAAGGAAAAGGATG+GGG + chr1_2:50240356-50240375 Msa0075150:CDS 45.0%
! AAGTCCCCATCCTTTTCCTT+CGG - chr1_2:50240363-50240382 None:intergenic 45.0%
ACCTTAGAGGAACTGCCAAA+AGG + chr1_2:50240386-50240405 Msa0075150:CDS 45.0%
! TCCTTTTGGCAGTTCCTCTA+AGG - chr1_2:50240390-50240409 None:intergenic 45.0%
GCATTTGTGTGTGAGTTTGC+TGG + chr1_2:50240410-50240429 Msa0075150:CDS 45.0%
TTACCCAGTTCTACTGGATG+CGG + chr1_2:50240499-50240518 Msa0075150:CDS 45.0%
GGTGCCAACCTTGAAACAAT+AGG - chr1_2:50240628-50240647 None:intergenic 45.0%
ATGGGAGAAGACAAAGTAGG+AGG + chr1_2:50240709-50240728 Msa0075150:intron 45.0%
CTGGTTATGTCCTCCTATGT+TGG - chr1_2:50240870-50240889 None:intergenic 45.0%
CAACATAGGAGGACATAACC+AGG + chr1_2:50240868-50240887 Msa0075150:intron 45.0%
CATGTTGCAGACTCATCTAG+TGG - chr1_2:50241178-50241197 None:intergenic 45.0%
CACTAGATGAGTCTGCAACA+TGG + chr1_2:50241176-50241195 Msa0075150:intron 45.0%
TATGCGAGGCAAGTTAAGGA+AGG - chr1_2:50241326-50241345 None:intergenic 45.0%
CAGTTATGCGAGGCAAGTTA+AGG - chr1_2:50241330-50241349 None:intergenic 45.0%
ACTTATCTCATAGCTGGCAG+CGG + chr1_2:50241435-50241454 Msa0075150:intron 45.0%
GTTCCTCGGCAAATGTTTGA+AGG + chr1_2:50241563-50241582 Msa0075150:intron 45.0%
TTCATGCGCTGCTATGTTTC+TGG - chr1_2:50241833-50241852 None:intergenic 45.0%
TTGCACTGGAACAGTTTGAC+AGG - chr1_2:50242259-50242278 None:intergenic 45.0%
ACTTACTGCCACATTTGCAC+TGG - chr1_2:50242273-50242292 None:intergenic 45.0%
AATGTGGCAGTAAGTTCTGC+AGG + chr1_2:50242278-50242297 Msa0075150:CDS 45.0%
! AGTGGTGGTGTCTACATACA+TGG - chr1_2:50242527-50242546 None:intergenic 45.0%
! CTTTTGATGCAGGATCCACT+AGG + chr1_2:50242589-50242608 Msa0075150:intron 45.0%
AGCAATTAACGCAGACCTAG+TGG - chr1_2:50242607-50242626 None:intergenic 45.0%
ACTAGGTCTGCGTTAATTGC+TGG + chr1_2:50242606-50242625 Msa0075150:CDS 45.0%
ACAAGACCCAGCTTACTTCA+TGG + chr1_2:50242689-50242708 Msa0075150:three_prime_UTR 45.0%
CATGCATCCATGAAGTAAGC+TGG - chr1_2:50242699-50242718 None:intergenic 45.0%
AACTATAGCTCAACCGCCAA+CGG - chr1_2:50242749-50242768 None:intergenic 45.0%
!! AACAATAAAAATAATATTAA+GGG - chr1_2:50238308-50238327 None:intergenic 5.0%
!! AAACAATAAAAATAATATTA+AGG - chr1_2:50238309-50238328 None:intergenic 5.0%
!!! GGCCGCTGCTATTTTTGGAT+TGG - chr1_2:50237528-50237547 None:intergenic 50.0%
CAAACTCTGTCATTGCCTGG+AGG - chr1_2:50237550-50237569 None:intergenic 50.0%
CTCCAGGCAATGACAGAGTT+TGG + chr1_2:50237548-50237567 Msa0075150:CDS 50.0%
TCCCAAACTCTGTCATTGCC+TGG - chr1_2:50237553-50237572 None:intergenic 50.0%
!! GCCCGTTTCACTTTTGCTTC+AGG - chr1_2:50237578-50237597 None:intergenic 50.0%
! ATTTTTACCCCTCTCCCCTG+TGG + chr1_2:50237720-50237739 Msa0075150:intron 50.0%
ATGGGGAAGAAGCTGAGCTA+GGG - chr1_2:50238026-50238045 None:intergenic 50.0%
AATGGGGAAGAAGCTGAGCT+AGG - chr1_2:50238027-50238046 None:intergenic 50.0%
AAGGACACAGCACTTGAAGG+CGG + chr1_2:50238066-50238085 Msa0075150:CDS 50.0%
! GATGACACTGCGTTGTTTCG+AGG - chr1_2:50238105-50238124 None:intergenic 50.0%
! TAAGAAGCATGCGGTGATGC+AGG - chr1_2:50238192-50238211 None:intergenic 50.0%
AGCTGAAACTGATAGAGGCG+AGG + chr1_2:50238680-50238699 Msa0075150:intron 50.0%
!! GTGATGGTGTCATGGAGACA+TGG - chr1_2:50239013-50239032 None:intergenic 50.0%
TGTGATAGCCTCTTCAGCTC+AGG + chr1_2:50239067-50239086 Msa0075150:CDS 50.0%
GTGATAGCCTCTTCAGCTCA+GGG + chr1_2:50239068-50239087 Msa0075150:CDS 50.0%
TACTTCTCCCTGAGCTGAAG+AGG - chr1_2:50239078-50239097 None:intergenic 50.0%
TGAGTAGGCATGCGGAAATC+TGG - chr1_2:50239137-50239156 None:intergenic 50.0%
GCCATCAACCTCTGATTCCT+TGG - chr1_2:50239336-50239355 None:intergenic 50.0%
ATCCTTACTGCCCACAATGG+CGG - chr1_2:50239363-50239382 None:intergenic 50.0%
GGGCAGTAAGGATTTGGACA+CGG + chr1_2:50239370-50239389 Msa0075150:CDS 50.0%
GGCAGTAAGGATTTGGACAC+GGG + chr1_2:50239371-50239390 Msa0075150:CDS 50.0%
!! TCTGATGGGCTGGTGAAAAG+GGG - chr1_2:50239460-50239479 None:intergenic 50.0%
!! CTCTGATGGGCTGGTGAAAA+GGG - chr1_2:50239461-50239480 None:intergenic 50.0%
TGATGTTAGAATGCAGCCGG+AGG + chr1_2:50239541-50239560 Msa0075150:CDS 50.0%
!! CAGAAGCATCTCGGAACACA+AGG - chr1_2:50239751-50239770 None:intergenic 50.0%
TCTATCTCGTATTGGGGCTG+AGG + chr1_2:50239781-50239800 Msa0075150:CDS 50.0%
TGTTGGAGCAAATGTGGCTG+TGG + chr1_2:50240058-50240077 Msa0075150:CDS 50.0%
GTTGGAGCAAATGTGGCTGT+GGG + chr1_2:50240059-50240078 Msa0075150:CDS 50.0%
TGTGGCTGTGGGAAACAATG+TGG + chr1_2:50240070-50240089 Msa0075150:CDS 50.0%
ATGGGGACTTCGTACCTTAG+AGG + chr1_2:50240373-50240392 Msa0075150:CDS 50.0%
ACTCCGCATCCAGTAGAACT+GGG - chr1_2:50240505-50240524 None:intergenic 50.0%
AGTTCTACTGGATGCGGAGT+GGG + chr1_2:50240505-50240524 Msa0075150:CDS 50.0%
TGCTTAGATGCAGCGTCCTT+TGG + chr1_2:50240560-50240579 Msa0075150:CDS 50.0%
ATAGGAGGACATAACCAGGG+AGG + chr1_2:50240872-50240891 Msa0075150:intron 50.0%
! TTTGGGGTAGGGAGAGATCA+AGG - chr1_2:50241276-50241295 None:intergenic 50.0%
!! ATGCGCTGCTATGTTTCTGG+TGG - chr1_2:50241830-50241849 None:intergenic 50.0%
AGCGCATGAAGAGCTCACTT+GGG + chr1_2:50241843-50241862 Msa0075150:CDS 50.0%
GGCCACGACACATGTCAAAT+TGG + chr1_2:50242381-50242400 Msa0075150:intron 50.0%
! ACCATTTTGTGGTCTCACCC+AGG + chr1_2:50242650-50242669 Msa0075150:three_prime_UTR 50.0%
ACCTGGGTGAGACCACAAAA+TGG - chr1_2:50242654-50242673 None:intergenic 50.0%
TTACGACTCATCCAGGACCT+GGG - chr1_2:50242670-50242689 None:intergenic 50.0%
!! GGTCTTGTTACGACTCATCC+AGG - chr1_2:50242677-50242696 None:intergenic 50.0%
TGGGAGCTTATTACCGTTGG+CGG + chr1_2:50242733-50242752 Msa0075150:three_prime_UTR 50.0%
!!! TGGAGGGCCGCTGCTATTTT+TGG - chr1_2:50237533-50237552 None:intergenic 55.0%
AAAAATAGCAGCGGCCCTCC+AGG + chr1_2:50237532-50237551 Msa0075150:CDS 55.0%
TGGGGAAGAAGCTGAGCTAG+GGG - chr1_2:50238025-50238044 None:intergenic 55.0%
ACCAGGGGGAACCATTGCAA+GGG - chr1_2:50238271-50238290 None:intergenic 55.0%
TACCAGGGGGAACCATTGCA+AGG - chr1_2:50238272-50238291 None:intergenic 55.0%
CACACACACGCACCCAACTA+TGG + chr1_2:50238453-50238472 Msa0075150:intron 55.0%
AGCTGCAGCTCAGCTCTTCA+GGG + chr1_2:50239110-50239129 Msa0075150:CDS 55.0%
TCCTTACTGCCCACAATGGC+GGG - chr1_2:50239362-50239381 None:intergenic 55.0%
TCTGCCTTGGTTTCACCTCG+AGG + chr1_2:50239434-50239453 Msa0075150:CDS 55.0%
!! GCTCTGATGGGCTGGTGAAA+AGG - chr1_2:50239462-50239481 None:intergenic 55.0%
ACCAGCCCATCAGAGCAGTT+TGG + chr1_2:50239466-50239485 Msa0075150:CDS 55.0%
! TCCAAACTGCTCTGATGGGC+TGG - chr1_2:50239470-50239489 None:intergenic 55.0%
TTTGGAGACACGGGATCCTC+CGG - chr1_2:50239560-50239579 None:intergenic 55.0%
GGAAATCGCGTTATCCAGCG+TGG + chr1_2:50240091-50240110 Msa0075150:CDS 55.0%
CACTCCGCATCCAGTAGAAC+TGG - chr1_2:50240506-50240525 None:intergenic 55.0%
CAGTTCTACTGGATGCGGAG+TGG + chr1_2:50240504-50240523 Msa0075150:CDS 55.0%
ATCTCATAGCTGGCAGCGGA+AGG + chr1_2:50241439-50241458 Msa0075150:intron 55.0%
CAGCGCATGAAGAGCTCACT+TGG + chr1_2:50241842-50241861 Msa0075150:CDS 55.0%
GTTACGACTCATCCAGGACC+TGG - chr1_2:50242671-50242690 None:intergenic 55.0%
CGGCCTCCATCTGTTCTTCC+TGG - chr1_2:50237930-50237949 None:intergenic 60.0%
GGAAGAACAGATGGAGGCCG+AGG + chr1_2:50237930-50237949 Msa0075150:intron 60.0%
CCAGGGGGAACCATTGCAAG+GGG - chr1_2:50238270-50238289 None:intergenic 60.0%
GAGCTGCAGCTCAGCTCTTC+AGG + chr1_2:50239109-50239128 Msa0075150:CDS 60.0%
TGATGGCACACCCGCCATTG+TGG + chr1_2:50239349-50239368 Msa0075150:CDS 60.0%
GATGGCACACCCGCCATTGT+GGG + chr1_2:50239350-50239369 Msa0075150:CDS 60.0%
ACCCGCCATTGTGGGCAGTA+AGG + chr1_2:50239358-50239377 Msa0075150:CDS 60.0%
TTGTGGTCTCACCCAGGTCC+TGG + chr1_2:50242656-50242675 Msa0075150:three_prime_UTR 60.0%
CAGTGTGTGCGCAGCCACAG+GGG - chr1_2:50237737-50237756 None:intergenic 65.0%
GCAGTGTGTGCGCAGCCACA+GGG - chr1_2:50237738-50237757 None:intergenic 65.0%
TGCAGTGTGTGCGCAGCCAC+AGG - chr1_2:50237739-50237758 None:intergenic 65.0%
TGAGCGGCGTCCCCTTGCAA+TGG + chr1_2:50238257-50238276 Msa0075150:CDS 65.0%
CCCCTTGCAATGGTTCCCCC+TGG + chr1_2:50238267-50238286 Msa0075150:CDS 65.0%
GGGGCCTCGAGGTGAAACCA+AGG - chr1_2:50239441-50239460 None:intergenic 65.0%
GCTGGTGAAAAGGGGCCTCG+AGG - chr1_2:50239452-50239471 None:intergenic 65.0%
TGCGCAGCCACAGGGGAGAG+GGG - chr1_2:50237730-50237749 None:intergenic 70.0%
GTGCGCAGCCACAGGGGAGA+GGG - chr1_2:50237731-50237750 None:intergenic 70.0%
TGTGCGCAGCCACAGGGGAG+AGG - chr1_2:50237732-50237751 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 50237483 50242847 50237483 ID=Msa0075150;Name=Msa0075150
chr1_2 mRNA 50237483 50242847 50237483 ID=Msa0075150-mRNA-1;Parent=Msa0075150;Name=Msa0075150-mRNA-1;_AED=0.04;_eAED=0.04;_QI=29|1|1|1|1|1|9|215|758
chr1_2 exon 50237483 50237703 50237483 ID=Msa0075150-mRNA-1:exon:15445;Parent=Msa0075150-mRNA-1
chr1_2 exon 50237792 50237827 50237792 ID=Msa0075150-mRNA-1:exon:15446;Parent=Msa0075150-mRNA-1
chr1_2 exon 50237931 50238288 50237931 ID=Msa0075150-mRNA-1:exon:15447;Parent=Msa0075150-mRNA-1
chr1_2 exon 50238952 50240132 50238952 ID=Msa0075150-mRNA-1:exon:15448;Parent=Msa0075150-mRNA-1
chr1_2 exon 50240347 50240609 50240347 ID=Msa0075150-mRNA-1:exon:15449;Parent=Msa0075150-mRNA-1
chr1_2 exon 50241631 50241697 50241631 ID=Msa0075150-mRNA-1:exon:15450;Parent=Msa0075150-mRNA-1
chr1_2 exon 50241814 50241864 50241814 ID=Msa0075150-mRNA-1:exon:15451;Parent=Msa0075150-mRNA-1
chr1_2 exon 50242223 50242319 50242223 ID=Msa0075150-mRNA-1:exon:15452;Parent=Msa0075150-mRNA-1
chr1_2 exon 50242601 50242847 50242601 ID=Msa0075150-mRNA-1:exon:15453;Parent=Msa0075150-mRNA-1
chr1_2 five_prime_UTR 50237483 50237511 50237483 ID=Msa0075150-mRNA-1:five_prime_utr;Parent=Msa0075150-mRNA-1
chr1_2 CDS 50237512 50237703 50237512 ID=Msa0075150-mRNA-1:cds;Parent=Msa0075150-mRNA-1
chr1_2 CDS 50237792 50237827 50237792 ID=Msa0075150-mRNA-1:cds;Parent=Msa0075150-mRNA-1
chr1_2 CDS 50237931 50238288 50237931 ID=Msa0075150-mRNA-1:cds;Parent=Msa0075150-mRNA-1
chr1_2 CDS 50238952 50240132 50238952 ID=Msa0075150-mRNA-1:cds;Parent=Msa0075150-mRNA-1
chr1_2 CDS 50240347 50240609 50240347 ID=Msa0075150-mRNA-1:cds;Parent=Msa0075150-mRNA-1
chr1_2 CDS 50241631 50241697 50241631 ID=Msa0075150-mRNA-1:cds;Parent=Msa0075150-mRNA-1
chr1_2 CDS 50241814 50241864 50241814 ID=Msa0075150-mRNA-1:cds;Parent=Msa0075150-mRNA-1
chr1_2 CDS 50242223 50242319 50242223 ID=Msa0075150-mRNA-1:cds;Parent=Msa0075150-mRNA-1
chr1_2 CDS 50242601 50242632 50242601 ID=Msa0075150-mRNA-1:cds;Parent=Msa0075150-mRNA-1
chr1_2 three_prime_UTR 50242633 50242847 50242633 ID=Msa0075150-mRNA-1:three_prime_utr;Parent=Msa0075150-mRNA-1
Gene Sequence

>Msa0075150

ATGGCGCCAAGGCCCAATCCAAAAATAGCAGCGGCCCTCCAGGCAATGACAGAGTTTGGGATTCCTGAAGCAAAAGTGAAACGGGCGCTAAAGAAACTCCTTAAGTTGTTTGATAAAAACTGGCAACTTATCGAGGAAGAGAACTATAGAGCTTTATTGGATGCTATATTTGAAGAAGGCGATGATTTTGAGGAGCCAGAACCACAAAAGAAAAACAAGAGAGTGAATGAAGAACAGATGGAGGCCGAGGATGCTCCGTTAAATGTTGAATCTGCTCGACCTTTGAAAAGATTGAGATTAAGAGGACAAGAGAACAATTCCCCTAGCTCAGCTTCTTCCCCATTGAAGAAGTCTCACATAGAAAAGGACACAGCACTTGAAGGCGGCTCTTCACAGCAGCCTCGAAACAACGCAGTGTCATCTGATGTGAATGGGAGGGTTGCAGCACGTCCCATGCGAGATGCTAGTTATGACAGGGGAAAGCAACCTGCATCACCGCATGCTTCTTATGAATTGACCGTACCTAAATCTGAGCCCGTTGATGAGGAAGATTATGAGCGGCGTCCCCTTGCAATGGTTCCCCCTGAACCATCAAGCTTAAGGCGCTATTCAAGGAAGAATGGTGTTACTGAAAAGCAAGGTGCCCATGTCTCCATGACACCATCACACCATAACACACGTAAAGAAGTGGTTTCTGATGTTGTGATAGCCTCTTCAGCTCAGGGAGAAGTAAAACTCTCTCTGAGCTGCAGCTCAGCTCTTCAGGGACCAGATTTCCGCATGCCTACTCAAGAACAACTTCTAAAGATGATGGAGGATAAATGTCTGCGATCATATAAAATCATCGACCCAAATTTTTCTGTCGGAAAAATGTTGAGAGATATATGTGATTGCATGTTGGAATTTAGTACTGATTCAAACGATAACTCACAAGAAGGTTCAATGTCAAAATCAAGCATAGATGTGTCCAAGGAATCAGAGGTTGATGGCACACCCGCCATTGTGGGCAGTAAGGATTTGGACACGGGTTCTCACTCATCAAATGGATCAATCCAAGTTAATTCTTTTTCTGCCTTGGTTTCACCTCGAGGCCCCTTTTCACCAGCCCATCAGAGCAGTTTGGATGATGCTGTACTGGTTTCCGAGATGAACAGGACAATTGATATTCCACAAAGTGATGTTAGAATGCAGCCGGAGGATCCCGTGTCTCCAAATTCACTCAGTTTAGTAGTTGTTCCACATCACCAGTCTACAGAAGATCGTATAAGGTCTTATCATGATGTTAGTGACCTTACAAAAGGAGAAGAGAATAATCAAATTTCATGGGTGAATGAATCATCTACTAACGATTTTCCACCACCTTTCAACTACATACCCCAAAACCTTGTGTTCCGAGATGCTTCTGTTAACATTTCTCTATCTCGTATTGGGGCTGAGGACAGTTGTTCCTGTATAGGAAGTTGCATCTTGTTGTCAGACACACATTGTGCCTGTACATATAAAACTGGGGGCAAATTTGCATATACAGCTCAAGGCCTAATTAAGGAAGAATTTTTGGAAGAGTGTATTGCTATCAGTCACAACCCTCAACAGCATTGCTTTTACTGCAAAGATTGTCCACTTGAAAGGTCAAAGAGTGATGGTTGTTTGGAACCATGTAAAGGACACTTGAAGAGAAAGTTTATTAAAGAATGTTGGAGCAAATGTGGCTGTGGGAAACAATGTGGAAATCGCGTTATCCAGCGTGGAATAACATACAACTTGCAGGTATTTTTCACATCCGAAGGAAAAGGATGGGGACTTCGTACCTTAGAGGAACTGCCAAAAGGAGCATTTGTGTGTGAGTTTGCTGGAGAAATTTTAACCATTAAAGAGTTGCATGAGAGGAACATGAAATGTGCTGAAAATGGGAAATCTACTTACCCAGTTCTACTGGATGCGGAGTGGGATTCAACATTTGTGAAGGATGAAGAAGCTCTATGCTTAGATGCAGCGTCCTTTGGCAACATTGCTAGATTTATCAATCACAGATGTTCTGATGCAAACTTGGTTGAAATCCCAATTCAAATTGAGTGTCCAGATCGTTACTACTATCATTTTGCCCTTTTTACCACCAGAAACATAGCAGCGCATGAAGAGCTCACTTGGGATTATGGCATTGACTTTGACGACCATGATCAACCTGTCAAACTGTTCCAGTGCAAATGTGGCAGTAAGTTCTGCAGGAATATGAAGCGATCAAACAGATCCACTAGGTCTGCGTTAATTGCTGGATGA
Protein sequence

>Msa0075150

MAPRPNPKIAAALQAMTEFGIPEAKVKRALKKLLKLFDKNWQLIEEENYRALLDAIFEEGDDFEEPEPQKKNKRVNEEQMEAEDAPLNVESARPLKRLRLRGQENNSPSSASSPLKKSHIEKDTALEGGSSQQPRNNAVSSDVNGRVAARPMRDASYDRGKQPASPHASYELTVPKSEPVDEEDYERRPLAMVPPEPSSLRRYSRKNGVTEKQGAHVSMTPSHHNTRKEVVSDVVIASSAQGEVKLSLSCSSALQGPDFRMPTQEQLLKMMEDKCLRSYKIIDPNFSVGKMLRDICDCMLEFSTDSNDNSQEGSMSKSSIDVSKESEVDGTPAIVGSKDLDTGSHSSNGSIQVNSFSALVSPRGPFSPAHQSSLDDAVLVSEMNRTIDIPQSDVRMQPEDPVSPNSLSLVVVPHHQSTEDRIRSYHDVSDLTKGEENNQISWVNESSTNDFPPPFNYIPQNLVFRDASVNISLSRIGAEDSCSCIGSCILLSDTHCACTYKTGGKFAYTAQGLIKEEFLEECIAISHNPQQHCFYCKDCPLERSKSDGCLEPCKGHLKRKFIKECWSKCGCGKQCGNRVIQRGITYNLQVFFTSEGKGWGLRTLEELPKGAFVCEFAGEILTIKELHERNMKCAENGKSTYPVLLDAEWDSTFVKDEEALCLDAASFGNIARFINHRCSDANLVEIPIQIECPDRYYYHFALFTTRNIAAHEELTWDYGIDFDDHDQPVKLFQCKCGSKFCRNMKRSNRSTRSALIAG*