AlfalfaGEDB | Msa0075870

M. sativa cultivar zhongmu-4 / Msa0075870

KEGG: -
GO: GO:0000003 GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009566 GO:0009567 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019953 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0044703 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0080134 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
PFAM: PF00010.29

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0075870	XP_003590536.1	99.645	282	1	0	1	282	1	282	0.0	576

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0075870	sp\|O22768\|UNE12_ARATH	70.358	307	64	7	2	281	3	309	9.14e-129	371

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0075870	G7ICM9	99.645	282	1	0	1	282	1	282	0.0	576

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TFs/TRs:

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Gene ID	Type	Classification
Msa0075870	TF	bHLH

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0075870	MtrunA17_Chr1g0184841	99.645	282	1	0	1	282	1	282	0.0	576
Msa0075870	MtrunA17_Chr1g0190731	80.571	175	34	0	104	278	177	351	3.03e-97	290
Msa0075870	MtrunA17_Chr4g0074161	65.854	164	46	3	108	262	194	356	3.05e-63	204
Msa0075870	MtrunA17_Chr1g0152131	51.579	95	45	1	91	184	231	325	1.42e-22	96.3
Msa0075870	MtrunA17_Chr7g0234761	60.000	75	29	1	111	184	308	382	4.43e-22	95.5
Msa0075870	MtrunA17_Chr8g0339091	60.000	75	29	1	111	184	282	356	7.41e-22	94.7
Msa0075870	MtrunA17_Chr3g0131771	48.980	98	49	1	112	208	139	236	7.64e-22	93.2
Msa0075870	MtrunA17_Chr3g0144641	65.152	66	22	1	120	184	191	256	5.00e-21	91.7
Msa0075870	MtrunA17_Chr8g0365941	63.636	66	23	1	120	184	305	370	3.00e-20	90.1
Msa0075870	MtrunA17_Chr4g0035101	63.636	66	23	1	120	184	143	208	3.56e-20	89.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0075870	AT4G02590.2	70.358	307	64	7	2	281	3	309	9.30e-130	371
Msa0075870	AT4G02590.1	70.358	307	64	7	2	281	3	309	9.30e-130	371
Msa0075870	AT4G02590.3	78.723	235	44	4	53	281	12	246	2.00e-115	332
Msa0075870	AT1G03040.1	68.919	296	62	8	8	282	16	302	1.61e-112	327
Msa0075870	AT1G03040.3	63.240	321	69	7	8	282	16	333	3.77e-108	317
Msa0075870	AT1G03040.2	67.797	295	62	9	8	282	16	297	4.71e-108	315
Msa0075870	AT2G24260.2	65.359	153	48	2	113	262	28	178	1.28e-62	198
Msa0075870	AT2G24260.1	65.359	153	48	2	113	262	131	281	1.49e-60	196
Msa0075870	AT5G58010.1	49.541	218	81	5	72	276	62	263	3.12e-60	193
Msa0075870	AT4G30980.1	57.714	175	64	2	106	280	116	280	6.67e-59	190

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Find 159 sgRNAs with CRISPR-Local

Find 351 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCCTCCGCCTTTACCC+TGG	0.569053	1_2:+51473251	None:intergenic
AAAGAATAGCTGAAAGAATC+AGG	0.318251	1_2:-51471843	Msa0075870:CDS
AAAGCAAGTAGCTAAGCTCA+TGG	0.563532	1_2:-51470179	Msa0075870:CDS
AAGAATAGCTGAAAGAATCA+GGG	0.613018	1_2:-51471842	Msa0075870:CDS
AAGCTACTATAATCAAGTAA+TGG	0.466355	1_2:-51469350	Msa0075870:three_prime_UTR
AAGCTCATGGAAGAAAATGT+TGG	0.509498	1_2:-51470166	Msa0075870:CDS
AAGGTGAGAGGCAGCGTCGC+CGG	0.485809	1_2:+51473327	None:intergenic
AATATACCAATCGCAACCGT+CGG	0.663547	1_2:-51470080	Msa0075870:CDS
AATGGGATGTCAGTTACCAG+TGG	0.664418	1_2:+51470359	None:intergenic
AATGGTTGCTTTAAGAATGC+TGG	0.540682	1_2:-51469537	Msa0075870:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GATTTCCTTGAACAAATTCT+CGG	-	chr1_2:51469381-51469400	Msa0075870:three_prime_UTR	30.0%
CTGATACTTTATCTCAGAAA+TGG	-	chr1_2:51469989-51470008	Msa0075870:three_prime_UTR	30.0%
TGGTGAAGTAACAAGTTATT+TGG	-	chr1_2:51470032-51470051	Msa0075870:exon	30.0%
GGTGAAGTAACAAGTTATTT+GGG	-	chr1_2:51470033-51470052	Msa0075870:exon	30.0%
ATCGTAGCATGAATTGTTAT+TGG	-	chr1_2:51470109-51470128	Msa0075870:CDS	30.0%
TAAAGATCATACACCAAGTT+AGG	+	chr1_2:51470163-51470182	None:intergenic	30.0%
GAACTAGCAATAAGTAAGAA+TGG	+	chr1_2:51470378-51470397	None:intergenic	30.0%
GAAAACATTTCAGACTTTGA+TGG	+	chr1_2:51470408-51470427	None:intergenic	30.0%
AAGGCAGAAAGGTAAATATA+AGG	+	chr1_2:51470600-51470619	None:intergenic	30.0%
TATATTTACCTTTCTGCCTT+TGG	-	chr1_2:51470600-51470619	Msa0075870:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	51469158	51473657	51469158	ID=Msa0075870;Name=Msa0075870
chr1_2	mRNA	51469158	51473657	51469158	ID=Msa0075870-mRNA-1;Parent=Msa0075870;Name=Msa0075870-mRNA-1;_AED=0.12;_eAED=0.12;_QI=190\|1\|1\|1\|1\|1\|6\|878\|282
chr1_2	exon	51469158	51470266	51469158	ID=Msa0075870-mRNA-1:exon:15867;Parent=Msa0075870-mRNA-1
chr1_2	exon	51470346	51470423	51470346	ID=Msa0075870-mRNA-1:exon:15866;Parent=Msa0075870-mRNA-1
chr1_2	exon	51471003	51471068	51471003	ID=Msa0075870-mRNA-1:exon:15865;Parent=Msa0075870-mRNA-1
chr1_2	exon	51471810	51471875	51471810	ID=Msa0075870-mRNA-1:exon:15864;Parent=Msa0075870-mRNA-1
chr1_2	exon	51472004	51472123	51472004	ID=Msa0075870-mRNA-1:exon:15863;Parent=Msa0075870-mRNA-1
chr1_2	exon	51473180	51473657	51473180	ID=Msa0075870-mRNA-1:exon:15862;Parent=Msa0075870-mRNA-1
chr1_2	five_prime_UTR	51473468	51473657	51473468	ID=Msa0075870-mRNA-1:five_prime_utr;Parent=Msa0075870-mRNA-1
chr1_2	CDS	51473180	51473467	51473180	ID=Msa0075870-mRNA-1:cds;Parent=Msa0075870-mRNA-1
chr1_2	CDS	51472004	51472123	51472004	ID=Msa0075870-mRNA-1:cds;Parent=Msa0075870-mRNA-1
chr1_2	CDS	51471810	51471875	51471810	ID=Msa0075870-mRNA-1:cds;Parent=Msa0075870-mRNA-1
chr1_2	CDS	51471003	51471068	51471003	ID=Msa0075870-mRNA-1:cds;Parent=Msa0075870-mRNA-1
chr1_2	CDS	51470346	51470423	51470346	ID=Msa0075870-mRNA-1:cds;Parent=Msa0075870-mRNA-1
chr1_2	CDS	51470036	51470266	51470036	ID=Msa0075870-mRNA-1:cds;Parent=Msa0075870-mRNA-1
chr1_2	three_prime_UTR	51469158	51470035	51469158	ID=Msa0075870-mRNA-1:three_prime_utr;Parent=Msa0075870-mRNA-1

Gene Sequence

>Msa0075870

ATGGCGAATCATCCTTCCGATACACCCGCCGACGATTTCCTTGAACAAATTCTCGGTCTTCCGAATTTCACCTCCGCCGACGGAACCGACGCTTCTCCGATGATGCTGCAGCTTAACTCCGGCGACGCTGCCTCTCACCTTGGCGCTGGAGGAGGGTTTCATGCACCGGTTTATCATTTGGGGTTGAGCTTGGACCAGGGTAAAGGCGGAGGGTTTTTGAAGCCTGATGAAGCTTCCGGGAGTGGGAAGCGTTTCCGGGAGGATCTTGTTGATACAAGACCTAAGAATACTTTTCATGGGCAACCCATGCCTACTACAGTTCCTGCTGCTCCACAACCACCAGCAATGCGACCTAGAGTGCGGGCAAGAAGAGGACAGGCTACAGATCCCCACAGCATCGCTGAAAGGTTGCGCAGAGAAAGAATAGCTGAAAGAATCAGGGCTTTGCAAGAACTTGTTCCTAGTGTCAACAAGACTGATCGAGCTGCCATGCTGGATGAAATTGTGGATTATGTCAAATTCTTAAGGCTTCAAGTGAAGGTTTTGAGCATGAGTAGATTGGGTGGAGCCGGTGCAGTGGCTCCACTGGTAACTGACATCCCATTATCGTCAGTCGAGGAAGAAGGAAGTGAGAGTGGGAGAAACCAACCAGCTTGGGAGAAGTGGTCTAATGATGGCACCGAAAAGCAAGTAGCTAAGCTCATGGAAGAAAATGTTGGGGCTGCGATGCAGTTTCTTCAATCAAAGGCTCTCTGCATAATGCCCATCTCACTGGCATCTGCAATATACCAATCGCAACCGTCGGACAACTCCAGTATAGTTAAGCCTGAAACTATTCCTCCTCCATAG

Protein sequence

>Msa0075870

MANHPSDTPADDFLEQILGLPNFTSADGTDASPMMLQLNSGDAASHLGAGGGFHAPVYHLGLSLDQGKGGGFLKPDEASGSGKRFREDLVDTRPKNTFHGQPMPTTVPAAPQPPAMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEEGSESGRNQPAWEKWSNDGTEKQVAKLMEENVGAAMQFLQSKALCIMPISLASAIYQSQPSDNSSIVKPETIPPP*