AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0075870

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0075870 MtrunA17_Chr1g0184841 99.645 282 1 0 1 282 1 282 0.0 576
Msa0075870 MtrunA17_Chr1g0190731 80.571 175 34 0 104 278 177 351 3.03e-97 290
Msa0075870 MtrunA17_Chr4g0074161 65.854 164 46 3 108 262 194 356 3.05e-63 204
Msa0075870 MtrunA17_Chr1g0152131 51.579 95 45 1 91 184 231 325 1.42e-22 96.3
Msa0075870 MtrunA17_Chr7g0234761 60.000 75 29 1 111 184 308 382 4.43e-22 95.5
Msa0075870 MtrunA17_Chr8g0339091 60.000 75 29 1 111 184 282 356 7.41e-22 94.7
Msa0075870 MtrunA17_Chr3g0131771 48.980 98 49 1 112 208 139 236 7.64e-22 93.2
Msa0075870 MtrunA17_Chr3g0144641 65.152 66 22 1 120 184 191 256 5.00e-21 91.7
Msa0075870 MtrunA17_Chr8g0365941 63.636 66 23 1 120 184 305 370 3.00e-20 90.1
Msa0075870 MtrunA17_Chr4g0035101 63.636 66 23 1 120 184 143 208 3.56e-20 89.0
Msa0075870 MtrunA17_Chr5g0415291 56.000 75 32 1 111 184 103 177 5.69e-20 86.3
Msa0075870 MtrunA17_Chr5g0421111 62.687 67 24 1 119 184 364 430 6.84e-20 89.4
Msa0075870 MtrunA17_Chr8g0363921 60.606 66 25 1 120 184 151 216 1.44e-19 86.3
Msa0075870 MtrunA17_Chr8g0385911 50.588 85 37 2 119 202 144 224 1.67e-19 86.7
Msa0075870 MtrunA17_Chr4g0014771 62.121 66 24 1 119 183 117 182 1.99e-18 81.3
Msa0075870 MtrunA17_Chr1g0193321 50.000 74 33 1 122 195 464 533 7.33e-18 83.6
Msa0075870 MtrunA17_Chr1g0152651 58.462 65 27 0 119 183 273 337 1.23e-17 82.0
Msa0075870 MtrunA17_Chr1g0174271 54.667 75 33 1 113 186 291 365 1.58e-17 81.6
Msa0075870 MtrunA17_Chr3g0134741 48.780 82 42 0 119 200 228 309 2.62e-17 80.5
Msa0075870 MtrunA17_Chr1g0174161 48.864 88 39 3 119 205 159 241 3.28e-17 80.1
Msa0075870 MtrunA17_Chr6g0484271 57.576 66 27 1 120 184 155 220 3.74e-17 79.3
Msa0075870 MtrunA17_Chr1g0182791 50.000 72 32 1 122 193 319 386 3.96e-17 81.3
Msa0075870 MtrunA17_Chr5g0393721 56.923 65 28 0 119 183 223 287 5.49e-17 79.7
Msa0075870 MtrunA17_Chr1g0153241 42.697 89 44 2 100 188 71 152 6.80e-17 78.6
Msa0075870 MtrunA17_Chr7g0258161 56.716 67 28 1 119 184 172 238 3.53e-16 77.4
Msa0075870 MtrunA17_Chr7g0270871 53.571 56 26 0 131 186 213 268 3.99e-16 77.4
Msa0075870 MtrunA17_Chr1g0207311 51.316 76 37 0 108 183 184 259 4.56e-16 76.6
Msa0075870 MtrunA17_Chr7g0262691 45.070 71 39 0 122 192 254 324 6.67e-16 77.4
Msa0075870 MtrunA17_Chr3g0134001 48.750 80 40 1 113 192 164 242 1.33e-15 75.1
Msa0075870 MtrunA17_Chr7g0271251 47.368 76 37 1 122 197 434 506 1.44e-15 76.6
Msa0075870 MtrunA17_Chr8g0351881 52.174 69 32 1 119 186 315 383 1.62e-15 75.9
Msa0075870 MtrunA17_Chr7g0258181 45.882 85 36 2 103 186 235 310 2.14e-15 75.1
Msa0075870 MtrunA17_Chr3g0095391 49.206 63 32 0 122 184 311 373 2.35e-15 75.9
Msa0075870 MtrunA17_Chr4g0032951 53.623 69 31 1 119 186 354 422 2.38e-15 75.5
Msa0075870 MtrunA17_Chr5g0435021 41.304 92 50 2 93 183 193 281 3.03e-15 74.3
Msa0075870 MtrunA17_Chr2g0329041 54.688 64 28 1 119 181 331 394 9.29e-15 73.9
Msa0075870 MtrunA17_Chr1g0207301 47.059 68 36 0 116 183 284 351 1.01e-14 73.6
Msa0075870 MtrunA17_Chr5g0402031 41.304 92 46 2 131 217 116 204 1.27e-14 73.2
Msa0075870 MtrunA17_Chr8g0384141 49.333 75 38 0 108 182 102 176 1.31e-14 72.0
Msa0075870 MtrunA17_Chr1g0185741 33.333 126 72 1 126 251 190 303 2.24e-14 72.0
Msa0075870 MtrunA17_Chr3g0087771 53.030 66 30 1 119 183 321 386 7.07e-14 71.2
Msa0075870 MtrunA17_Chr7g0231461 43.750 64 36 0 120 183 297 360 1.70e-12 67.4
Msa0075870 MtrunA17_Chr7g0243041 47.170 53 28 0 127 179 33 85 5.29e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0075870 AT4G02590.2 70.358 307 64 7 2 281 3 309 9.30e-130 371
Msa0075870 AT4G02590.1 70.358 307 64 7 2 281 3 309 9.30e-130 371
Msa0075870 AT4G02590.3 78.723 235 44 4 53 281 12 246 2.00e-115 332
Msa0075870 AT1G03040.1 68.919 296 62 8 8 282 16 302 1.61e-112 327
Msa0075870 AT1G03040.3 63.240 321 69 7 8 282 16 333 3.77e-108 317
Msa0075870 AT1G03040.2 67.797 295 62 9 8 282 16 297 4.71e-108 315
Msa0075870 AT2G24260.2 65.359 153 48 2 113 262 28 178 1.28e-62 198
Msa0075870 AT2G24260.1 65.359 153 48 2 113 262 131 281 1.49e-60 196
Msa0075870 AT5G58010.1 49.541 218 81 5 72 276 62 263 3.12e-60 193
Msa0075870 AT4G30980.1 57.714 175 64 2 106 280 116 280 6.67e-59 190
Msa0075870 AT4G30980.2 57.714 175 64 2 106 280 164 328 1.14e-58 191
Msa0075870 AT5G50915.3 53.333 90 37 2 112 200 128 213 2.68e-23 96.3
Msa0075870 AT5G50915.4 53.333 90 37 2 112 200 128 213 2.68e-23 96.3
Msa0075870 AT5G50915.1 53.333 90 37 2 112 200 128 213 3.12e-23 96.7
Msa0075870 AT5G50915.2 53.333 90 37 2 112 200 128 213 3.12e-23 96.7
Msa0075870 AT5G48560.2 61.333 75 28 1 111 184 292 366 3.67e-22 95.9
Msa0075870 AT5G48560.1 61.333 75 28 1 111 184 292 366 3.77e-22 96.3
Msa0075870 AT3G23690.1 45.378 119 55 3 67 184 147 256 4.77e-21 92.0
Msa0075870 AT1G10120.2 64.179 67 23 1 119 184 205 271 9.73e-21 90.9
Msa0075870 AT1G10120.1 64.179 67 23 1 119 184 205 271 9.73e-21 90.9
Msa0075870 AT3G07340.1 64.179 67 23 1 119 184 257 323 1.44e-20 91.3
Msa0075870 AT3G07340.2 65.152 66 22 1 120 184 258 323 1.53e-20 91.3
Msa0075870 AT4G34530.1 62.687 67 24 1 119 184 171 237 1.57e-20 90.1
Msa0075870 AT1G68920.3 63.636 66 23 1 120 184 302 367 2.48e-20 90.9
Msa0075870 AT1G68920.1 63.636 66 23 1 120 184 303 368 2.54e-20 90.9
Msa0075870 AT1G68920.4 63.636 66 23 1 120 184 303 368 2.54e-20 90.9
Msa0075870 AT1G68920.2 63.636 66 23 1 120 184 303 368 2.54e-20 90.9
Msa0075870 AT5G62610.2 37.594 133 67 3 111 227 144 276 4.69e-20 87.8
Msa0075870 AT5G62610.1 37.594 133 67 3 111 227 144 276 4.69e-20 87.8
Msa0075870 AT1G26260.3 52.273 88 36 3 119 205 171 253 7.49e-20 88.2
Msa0075870 AT1G26260.5 52.273 88 36 3 119 205 200 282 7.49e-20 88.6
Msa0075870 AT1G26260.4 52.273 88 36 3 119 205 222 304 1.02e-19 88.6
Msa0075870 AT1G26260.1 52.273 88 36 3 119 205 222 304 1.02e-19 88.6
Msa0075870 AT1G26260.6 52.273 88 36 3 119 205 222 304 1.02e-19 88.6
Msa0075870 AT1G26260.2 52.273 88 36 3 119 205 222 304 1.02e-19 88.6
Msa0075870 AT4G33880.1 51.685 89 43 0 116 204 262 350 2.34e-19 87.0
Msa0075870 AT2G18300.1 60.606 66 25 1 120 184 185 250 2.38e-19 86.7
Msa0075870 AT2G18300.2 60.606 66 25 1 120 184 185 250 2.40e-19 86.7
Msa0075870 AT2G18300.3 60.606 66 25 1 120 184 185 250 3.33e-19 86.7
Msa0075870 AT1G25330.1 52.326 86 39 2 112 196 96 180 3.65e-19 84.3
Msa0075870 AT1G59640.1 60.606 66 25 1 120 184 136 201 4.82e-19 84.7
Msa0075870 AT1G73830.2 62.121 66 24 1 120 184 147 212 4.90e-19 84.7
Msa0075870 AT1G73830.1 62.121 66 24 1 120 184 147 212 5.19e-19 84.7
Msa0075870 AT4G36540.2 59.091 66 26 1 120 184 141 206 8.85e-19 84.7
Msa0075870 AT4G36540.1 59.091 66 26 1 120 184 141 206 9.07e-19 84.7
Msa0075870 AT2G14760.1 50.575 87 43 0 116 202 233 319 1.17e-18 84.7
Msa0075870 AT1G59640.2 60.606 66 25 1 120 184 136 201 1.49e-18 84.7
Msa0075870 AT1G18400.2 56.000 75 31 2 119 192 144 217 2.20e-18 82.8
Msa0075870 AT1G18400.1 60.606 66 25 1 120 184 145 210 4.40e-18 82.0
Msa0075870 AT3G57800.2 39.416 137 58 3 120 231 204 340 4.93e-18 83.6
Msa0075870 AT1G27740.1 43.158 95 53 1 90 183 136 230 9.34e-18 81.3
Msa0075870 AT2G42300.1 43.697 119 54 5 119 229 184 297 2.15e-17 81.3
Msa0075870 AT4G09180.1 60.606 66 25 1 119 183 183 248 2.84e-17 79.7
Msa0075870 AT1G09530.3 50.000 64 32 0 122 185 339 402 4.23e-17 81.3
Msa0075870 AT1G09530.2 50.000 64 32 0 122 185 339 402 4.23e-17 81.3
Msa0075870 AT1G09530.5 50.000 64 32 0 122 185 339 402 4.23e-17 81.3
Msa0075870 AT1G09530.1 50.000 64 32 0 122 185 339 402 4.23e-17 81.3
Msa0075870 AT1G09530.4 50.000 64 32 0 122 185 339 402 4.23e-17 81.3
Msa0075870 AT1G09530.6 50.000 64 32 0 122 185 339 402 4.23e-17 81.3
Msa0075870 AT1G35460.1 60.606 66 25 1 119 183 180 245 6.22e-17 79.0
Msa0075870 AT2G42300.4 54.023 87 34 4 120 205 185 266 7.89e-17 79.0
Msa0075870 AT2G42280.1 56.522 69 29 1 119 186 278 346 8.26e-17 79.7
Msa0075870 AT2G20180.7 50.794 63 31 0 122 184 209 271 9.96e-17 80.1
Msa0075870 AT2G20180.1 50.794 63 31 0 122 184 209 271 9.96e-17 80.1
Msa0075870 AT2G20180.5 50.794 63 31 0 122 184 209 271 9.96e-17 80.1
Msa0075870 AT2G20180.4 50.794 63 31 0 122 184 280 342 1.36e-16 79.7
Msa0075870 AT2G20180.6 50.794 63 31 0 122 184 280 342 1.36e-16 79.7
Msa0075870 AT2G20180.2 50.794 63 31 0 122 184 280 342 1.36e-16 79.7
Msa0075870 AT2G20180.3 50.794 63 31 0 122 184 280 342 1.36e-16 79.7
Msa0075870 AT2G14760.3 45.000 100 42 1 116 202 233 332 2.88e-16 78.2
Msa0075870 AT5G43175.1 49.275 69 35 0 115 183 127 195 3.01e-16 76.3
Msa0075870 AT2G42280.3 59.375 64 25 1 119 181 278 341 8.79e-16 77.0
Msa0075870 AT2G20180.8 51.667 60 29 0 122 181 280 339 1.32e-15 76.3
Msa0075870 AT1G51140.1 55.072 69 30 1 119 186 303 371 5.69e-15 74.7
Msa0075870 AT3G21330.1 60.714 56 22 0 127 182 276 331 1.17e-14 73.6
Msa0075870 AT1G66470.1 47.945 73 37 1 129 200 204 276 1.64e-14 72.8
Msa0075870 AT5G37800.1 47.945 73 37 1 129 200 210 282 2.51e-14 72.0
Msa0075870 AT4G36930.1 50.847 59 29 0 126 184 197 255 4.28e-14 72.0
Msa0075870 AT5G67110.1 50.847 59 28 1 131 188 98 156 1.06e-13 68.9
Msa0075870 AT4G28790.1 44.118 68 38 0 117 184 268 335 2.06e-13 70.1
Msa0075870 AT4G00050.2 45.312 64 35 0 120 183 105 168 2.49e-13 69.3
Msa0075870 AT4G00050.1 45.312 64 35 0 120 183 207 270 4.95e-13 68.9
Msa0075870 AT4G00050.3 45.312 64 35 0 120 183 207 270 6.02e-13 68.6
Msa0075870 AT4G28815.2 43.860 57 32 0 123 179 71 127 9.24e-13 66.6
Msa0075870 AT2G46970.2 39.189 74 41 1 122 195 194 263 2.17e-12 67.0
Msa0075870 AT2G46970.1 39.189 74 41 1 122 195 225 294 2.23e-12 67.0
Msa0075870 AT2G46970.3 39.189 74 41 1 122 195 203 272 2.31e-12 67.0
Msa0075870 AT4G28815.1 43.860 57 32 0 123 179 147 203 2.35e-12 66.6
Msa0075870 AT2G43140.1 36.220 127 66 4 59 182 83 197 2.55e-12 65.1
Msa0075870 AT2G43140.2 53.846 65 29 1 119 182 230 294 2.77e-12 66.2
Msa0075870 AT5G01305.1 47.541 61 32 0 119 179 36 96 3.63e-12 63.9
Msa0075870 AT4G28800.1 36.000 75 44 1 123 197 252 322 4.56e-12 66.2
Msa0075870 AT2G43010.1 53.333 60 28 0 123 182 254 313 4.91e-12 66.2
Msa0075870 AT2G43010.2 53.333 60 28 0 123 182 254 313 4.93e-12 66.2
Msa0075870 AT4G28790.2 43.750 64 36 0 117 180 268 331 5.40e-12 65.9
Msa0075870 AT2G43010.3 53.333 60 28 0 123 182 261 320 5.45e-12 65.9
Msa0075870 AT3G59060.3 49.206 63 32 0 122 184 252 314 6.11e-12 65.9
Msa0075870 AT3G59060.2 49.206 63 32 0 122 184 252 314 6.11e-12 65.9
Msa0075870 AT3G59060.4 49.206 63 32 0 122 184 252 314 6.11e-12 65.9
Msa0075870 AT3G59060.1 49.206 63 32 0 122 184 252 314 6.38e-12 65.9
Msa0075870 AT2G43010.5 53.333 60 28 0 123 182 296 355 6.80e-12 65.9
Msa0075870 AT2G43010.4 53.333 60 28 0 123 182 254 313 7.31e-12 65.5
Msa0075870 AT4G00120.1 43.210 81 44 2 114 192 105 185 1.13e-11 63.2

Find 159 sgRNAs with CRISPR-Local

Find 351 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCGGGAGTGGGAAGCGTTTC+CGG 0.137108 1_2:-51473210 Msa0075870:CDS
CATGCACCGGTTTATCATTT+GGG 0.231247 1_2:-51473286 Msa0075870:CDS
TTATGTTAAGTTACATTCTT+AGG 0.274593 1_2:+51473166 None:intergenic
CGGGAGTGGGAAGCGTTTCC+GGG 0.277270 1_2:-51473209 Msa0075870:CDS
TCATGCACCGGTTTATCATT+TGG 0.277273 1_2:-51473287 Msa0075870:CDS
AGCGCCTCATCTACTACTTC+TGG 0.285746 1_2:-51469968 Msa0075870:three_prime_UTR
GTGGCTTGTTTGTTGACTAT+TGG 0.286493 1_2:-51469169 Msa0075870:three_prime_UTR
CAAATCAATGACTAAAATTA+AGG 0.288738 1_2:+51469914 None:intergenic
TATAGTAGCTTAGTATGAAT+TGG 0.293266 1_2:+51469362 None:intergenic
ATTACCTCGACTGACGATAA+TGG 0.304796 1_2:+51470341 None:intergenic
AAAGAATAGCTGAAAGAATC+AGG 0.318251 1_2:-51471843 Msa0075870:CDS
TATGGAAAATTTCTTGTAAA+GGG 0.323225 1_2:-51469769 Msa0075870:three_prime_UTR
AGTTTCAGGCTTAACTATAC+TGG 0.328183 1_2:+51470051 None:intergenic
TATGGAGGAGGAATAGTTTC+AGG 0.332933 1_2:+51470037 None:intergenic
TTGAAGCCTGATGAAGCTTC+CGG 0.337349 1_2:-51473229 Msa0075870:CDS
CGCACTCTAGGTCGCATTGC+TGG 0.338179 1_2:+51472050 None:intergenic
TCTCACCTTGGCGCTGGAGG+AGG 0.354681 1_2:-51473313 Msa0075870:CDS
AGCAGACCCTATCCTGTCTA+TGG 0.355480 1_2:-51469787 Msa0075870:three_prime_UTR
TGGATTATGTCAAATTCTTA+AGG 0.362058 1_2:-51471015 Msa0075870:CDS
TCTGAGTGACTAGTTGAAAA+TGG 0.367989 1_2:+51473552 None:intergenic
CATCACTAATAAATACTATA+TGG 0.373746 1_2:+51469598 None:intergenic
TGAAGCCTGATGAAGCTTCC+GGG 0.376117 1_2:-51473228 Msa0075870:CDS
CCTCTTCTTGCCCGCACTCT+AGG 0.378408 1_2:+51472038 None:intergenic
ATAGTAGCTTAGTATGAATT+GGG 0.382743 1_2:+51469363 None:intergenic
TTACCTCGACTGACGATAAT+GGG 0.384485 1_2:+51470342 None:intergenic
CATAAAGTTGCATTCAAAGT+AGG 0.388409 1_2:-51469891 Msa0075870:three_prime_UTR
CCACTCCCGGAAGCTTCATC+AGG 0.392070 1_2:+51473223 None:intergenic
GTTTCGCTTTATTGGATGCT+TGG 0.392909 1_2:+51473609 None:intergenic
GTGGGACCTTGTAAAAGGTT+AGG 0.393557 1_2:-51469628 Msa0075870:three_prime_UTR
AGCTCATGGAAGAAAATGTT+GGG 0.395774 1_2:-51470165 Msa0075870:CDS
CATTGTCGAAGGCATGTCTA+TGG 0.405574 1_2:+51470019 None:intergenic
TCACTTGAGAGTTGAGAATC+AGG 0.406798 1_2:+51469284 None:intergenic
GGGATGTGGGACCTTGTAAA+AGG 0.408505 1_2:-51469633 Msa0075870:three_prime_UTR
TGACTAAAATTAAGGAGGTT+AGG 0.414380 1_2:+51469922 None:intergenic
GATTTCCTTGAACAAATTCT+CGG 0.419929 1_2:-51473412 Msa0075870:CDS
AGCTACTATAATCAAGTAAT+GGG 0.421241 1_2:-51469349 Msa0075870:three_prime_UTR
CTATGGAAAATTTCTTGTAA+AGG 0.421865 1_2:-51469770 Msa0075870:three_prime_UTR
GCTGCCTCTCACCTTGGCGC+TGG 0.427725 1_2:-51473319 Msa0075870:CDS
CCGTCGGCGGAGGTGAAATT+CGG 0.429325 1_2:+51473385 None:intergenic
TTATCATTTGGGGTTGAGCT+TGG 0.431085 1_2:-51473275 Msa0075870:CDS
CAGGAAGAAGGAAGTGAGAG+TGG 0.433710 1_2:-51470247 Msa0075870:CDS
GCCTCTCACCTTGGCGCTGG+AGG 0.436271 1_2:-51473316 Msa0075870:CDS
TTTGGGGTTGAGCTTGGACC+AGG 0.438558 1_2:-51473269 Msa0075870:CDS
CTCACCTTGGCGCTGGAGGA+GGG 0.440875 1_2:-51473312 Msa0075870:CDS
GGTCGCATTGCTGGTGGTTG+TGG 0.453211 1_2:+51472059 None:intergenic
CTCAACCCCAAATGATAAAC+CGG 0.453773 1_2:+51473280 None:intergenic
GCGCCTCATCTACTACTTCT+GGG 0.457754 1_2:-51469967 Msa0075870:three_prime_UTR
GAAGACCGAGAATTTGTTCA+AGG 0.461614 1_2:+51473407 None:intergenic
TGGGAGAAACCAACCAGCTT+GGG 0.463571 1_2:-51470227 Msa0075870:CDS
GGAACAGACAAATAACTTGC+GGG 0.464105 1_2:+51469943 None:intergenic
GGCGACGCTGCCTCTCACCT+TGG 0.464276 1_2:-51473325 Msa0075870:CDS
AAGCTACTATAATCAAGTAA+TGG 0.466355 1_2:-51469350 Msa0075870:three_prime_UTR
TTGAGCTTGGACCAGGGTAA+AGG 0.474258 1_2:-51473262 Msa0075870:CDS
GACTGATCGAGCTGCCATGC+TGG 0.479757 1_2:-51471047 Msa0075870:CDS
TGGAGGAGGGTTTCATGCAC+CGG 0.480121 1_2:-51473299 Msa0075870:CDS
CCGGAAACGCTTCCCACTCC+CGG 0.481302 1_2:+51473210 None:intergenic
AAGGTGAGAGGCAGCGTCGC+CGG 0.485809 1_2:+51473327 None:intergenic
TTGTTGACTATTGGATGGAT+TGG 0.486343 1_2:-51469160 Msa0075870:three_prime_UTR
GAGGCGCTCGATGGGACCAC+TGG 0.486947 1_2:+51469983 None:intergenic
TCCCCACAGCATCGCTGAAA+GGG 0.487553 1_2:-51472003 Msa0075870:intron
CTTGTTTGTTGACTATTGGA+TGG 0.488344 1_2:-51469165 Msa0075870:three_prime_UTR
AGCTTAGTATGAATTGGGTT+AGG 0.488605 1_2:+51469368 None:intergenic
ATTCTTAAGGCTTCAAGTGA+AGG 0.492189 1_2:-51471002 Msa0075870:intron
ATTGCAGATGCCAGTGAGAT+GGG 0.492955 1_2:+51470100 None:intergenic
TGTTGAAGTGCAATAGATAA+TGG 0.494811 1_2:-51469555 Msa0075870:three_prime_UTR
TTGGACCAGGGTAAAGGCGG+AGG 0.497852 1_2:-51473256 Msa0075870:CDS
CCTGATGAAGCTTCCGGGAG+TGG 0.498744 1_2:-51473223 Msa0075870:CDS
ATGCACCGGTTTATCATTTG+GGG 0.499545 1_2:-51473285 Msa0075870:CDS
AGCGTCGGTTCCGTCGGCGG+AGG 0.501900 1_2:+51473375 None:intergenic
CCGAATTTCACCTCCGCCGA+CGG 0.502344 1_2:-51473385 Msa0075870:CDS
TTCAGACACAAGACACAAGA+AGG 0.502645 1_2:+51473583 None:intergenic
AGCCGGTGCAGTGGCTCCAC+TGG 0.503330 1_2:-51470375 Msa0075870:CDS
TGGGACCTTGTAAAAGGTTA+GGG 0.504824 1_2:-51469627 Msa0075870:three_prime_UTR
ATGAGTAGATTGGGTGGAGC+CGG 0.504884 1_2:-51470392 Msa0075870:CDS
GAAATCGTCGGCGGGTGTAT+CGG 0.505672 1_2:+51473429 None:intergenic
GGAGCAGCAGGAACTGTAGT+AGG 0.506388 1_2:+51472080 None:intergenic
TCACCCTTTCAGCGATGCTG+TGG 0.507317 1_2:+51472000 None:intergenic
CGGAGAAGCGTCGGTTCCGT+CGG 0.507774 1_2:+51473369 None:intergenic
GCTGGTGGTTGTGGAGCAGC+AGG 0.508567 1_2:+51472068 None:intergenic
AAGCTCATGGAAGAAAATGT+TGG 0.509498 1_2:-51470166 Msa0075870:CDS
GTGGGAGAAACCAACCAGCT+TGG 0.509556 1_2:-51470228 Msa0075870:CDS
CTTACTGATTAAGAGCCACT+TGG 0.510794 1_2:+51469313 None:intergenic
ACCACTTCTCCCAAGCTGGT+TGG 0.515047 1_2:+51470218 None:intergenic
AGCAGGAACTGTAGTAGGCA+TGG 0.515934 1_2:+51472085 None:intergenic
TAAAATTTGTCAAAGTGATG+TGG 0.523763 1_2:-51469188 Msa0075870:three_prime_UTR
TTGAGGTGTGTGTATGTGTG+TGG 0.524731 1_2:-51469473 Msa0075870:three_prime_UTR
GACATGCCTTCGACAATGCT+TGG 0.526093 1_2:-51470014 Msa0075870:three_prime_UTR
TATTGCAGATGCCAGTGAGA+TGG 0.526193 1_2:+51470099 None:intergenic
CACCCTTTCAGCGATGCTGT+GGG 0.526622 1_2:+51472001 None:intergenic
AGTTGTCCGACGGTTGCGAT+TGG 0.526806 1_2:+51470074 None:intergenic
ACCAACCAGCTTGGGAGAAG+TGG 0.527139 1_2:-51470219 Msa0075870:CDS
GAGTTAAGCTGCAGCATCAT+CGG 0.527777 1_2:+51473349 None:intergenic
TGATGTAAGTGCTTTGATAG+TGG 0.527825 1_2:-51469675 Msa0075870:three_prime_UTR
TCCTCCAGCGCCAAGGTGAG+AGG 0.528910 1_2:+51473315 None:intergenic
TAGTAGATGAGGCGCTCGAT+GGG 0.530898 1_2:+51469975 None:intergenic
ATCCCCACAGCATCGCTGAA+AGG 0.531960 1_2:-51472004 Msa0075870:CDS
TTAGACCACTTCTCCCAAGC+TGG 0.534418 1_2:+51470214 None:intergenic
CTGCATAATGCCCATCTCAC+TGG 0.536918 1_2:-51470110 Msa0075870:CDS
GATGTAAGTGCTTTGATAGT+GGG 0.537670 1_2:-51469674 Msa0075870:three_prime_UTR
CTGATGAAGCTTCCGGGAGT+GGG 0.540261 1_2:-51473222 Msa0075870:CDS
AATGGTTGCTTTAAGAATGC+TGG 0.540682 1_2:-51469537 Msa0075870:three_prime_UTR
AGGAAGAAGGAAGTGAGAGT+GGG 0.541139 1_2:-51470246 Msa0075870:CDS
GATGCAGTTTCTTCAATCAA+AGG 0.543892 1_2:-51470137 Msa0075870:CDS
CGAAGGCATGTCTATGGAGG+AGG 0.550678 1_2:+51470025 None:intergenic
AGCAATGCGACCTAGAGTGC+GGG 0.553479 1_2:-51472048 Msa0075870:CDS
TGAGGTGTGTGTATGTGTGT+GGG 0.555367 1_2:-51469472 Msa0075870:three_prime_UTR
TACCAGTGGAGCCACTGCAC+CGG 0.556175 1_2:+51470373 None:intergenic
AGTGCGGGCAAGAAGAGGAC+AGG 0.556988 1_2:-51472033 Msa0075870:CDS
AGAAGCGTCGGTTCCGTCGG+CGG 0.557440 1_2:+51473372 None:intergenic
ACGTGCTGTATGGATATGAA+TGG 0.559178 1_2:-51469238 Msa0075870:three_prime_UTR
ATGTAAGTGCTTTGATAGTG+GGG 0.560271 1_2:-51469673 Msa0075870:three_prime_UTR
AAAGCAAGTAGCTAAGCTCA+TGG 0.563532 1_2:-51470179 Msa0075870:CDS
AAAACCCTCCGCCTTTACCC+TGG 0.569053 1_2:+51473251 None:intergenic
TGGGAGAAGTGGTCTAATGA+TGG 0.569736 1_2:-51470208 Msa0075870:CDS
ATTGGGTGGAGCCGGTGCAG+TGG 0.571354 1_2:-51470384 Msa0075870:CDS
TGGACCAGGGTAAAGGCGGA+GGG 0.572928 1_2:-51473255 Msa0075870:CDS
CCTAGAGTGCGGGCAAGAAG+AGG 0.582770 1_2:-51472038 Msa0075870:CDS
GCAGGAACTGTAGTAGGCAT+GGG 0.583605 1_2:+51472086 None:intergenic
TGTTCAAGGAAATCGTCGGC+GGG 0.587670 1_2:+51473421 None:intergenic
TATTAGTGATGTAACTCTAG+AGG 0.590895 1_2:-51469586 Msa0075870:three_prime_UTR
GAAACCCTCCTCCAGCGCCA+AGG 0.593872 1_2:+51473308 None:intergenic
GCACGTAAAAGTTGAGAGCA+TGG 0.596826 1_2:+51469255 None:intergenic
ACTCTAGGTCGCATTGCTGG+TGG 0.603281 1_2:+51472053 None:intergenic
TTGAGCATGAGTAGATTGGG+TGG 0.604660 1_2:-51470398 Msa0075870:CDS
CAGCATCATCGGAGAAGCGT+CGG 0.604818 1_2:+51473360 None:intergenic
TTACTGATTAAGAGCCACTT+GGG 0.607539 1_2:+51469314 None:intergenic
TTGTATCAACAAGATCCTCC+CGG 0.608383 1_2:+51473191 None:intergenic
GTAGTAGATGAGGCGCTCGA+TGG 0.608554 1_2:+51469974 None:intergenic
AGCTTGGACCAGGGTAAAGG+CGG 0.611354 1_2:-51473259 Msa0075870:CDS
AAGAATAGCTGAAAGAATCA+GGG 0.613018 1_2:-51471842 Msa0075870:CDS
TCGTCGGCGGGTGTATCGGA+AGG 0.615492 1_2:+51473433 None:intergenic
TTGGGGTTGAGCTTGGACCA+GGG 0.616126 1_2:-51473268 Msa0075870:CDS
TGCCATGCTGGATGAAATTG+TGG 0.617577 1_2:-51471035 Msa0075870:CDS
ATCAATGACTAAAATTAAGG+AGG 0.621549 1_2:+51469917 None:intergenic
CAGCAATGCGACCTAGAGTG+CGG 0.622938 1_2:-51472049 Msa0075870:CDS
ATCCACAATTTCATCCAGCA+TGG 0.624370 1_2:+51471033 None:intergenic
AGGAACAGACAAATAACTTG+CGG 0.627300 1_2:+51469942 None:intergenic
ACCCTTTCAGCGATGCTGTG+GGG 0.628979 1_2:+51472002 None:intergenic
TGTCGAAGGCATGTCTATGG+AGG 0.632032 1_2:+51470022 None:intergenic
TTGTTCAAGGAAATCGTCGG+CGG 0.636210 1_2:+51473420 None:intergenic
ATGATGCTGCAGCTTAACTC+CGG 0.636220 1_2:-51473346 Msa0075870:CDS
ACTATACTGGAGTTGTCCGA+CGG 0.639351 1_2:+51470064 None:intergenic
TCAGACACAAGACACAAGAA+GGG 0.642723 1_2:+51473584 None:intergenic
TCATGTACCTTGTTGACACT+AGG 0.645489 1_2:+51471802 None:intergenic
GGTCCCAGAAGTAGTAGATG+AGG 0.654289 1_2:+51469964 None:intergenic
GACACAAGACACAAGAAGGG+GGG 0.655951 1_2:+51473587 None:intergenic
GACCTTGTAAAAGGTTAGGG+TGG 0.659952 1_2:-51469624 Msa0075870:three_prime_UTR
GAGTGGGAAGCGTTTCCGGG+AGG 0.662373 1_2:-51473206 Msa0075870:CDS
AGACACAAGACACAAGAAGG+GGG 0.662922 1_2:+51473586 None:intergenic
AATATACCAATCGCAACCGT+CGG 0.663547 1_2:-51470080 Msa0075870:CDS
AATGGGATGTCAGTTACCAG+TGG 0.664418 1_2:+51470359 None:intergenic
ACTTGTTCCTAGTGTCAACA+AGG 0.667852 1_2:-51471809 Msa0075870:intron
CATCCCATTATCGTCAGTCG+AGG 0.668468 1_2:-51470345 Msa0075870:intron
GATGTGCCAAGCATTGTCGA+AGG 0.672703 1_2:+51470008 None:intergenic
GCTCATGGAAGAAAATGTTG+GGG 0.678396 1_2:-51470164 Msa0075870:CDS
CAGACACAAGACACAAGAAG+GGG 0.682422 1_2:+51473585 None:intergenic
AATTTGTTCAAGGAAATCGT+CGG 0.683744 1_2:+51473417 None:intergenic
ATGCTTGGCACATCATCCAG+TGG 0.687924 1_2:-51469999 Msa0075870:three_prime_UTR
GGAACTTGATTGTGCCCAAG+TGG 0.694880 1_2:-51469328 Msa0075870:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATATATATATTTTTTTTT+TGG - chr1_2:51471634-51471653 Msa0075870:intron 0.0%
!!! AATATATATATTTTTTTTTT+GGG - chr1_2:51471635-51471654 Msa0075870:intron 0.0%
!!! AAACTAATTTTGTTTAATTT+TGG - chr1_2:51469716-51469735 Msa0075870:three_prime_UTR 10.0%
!!! ACGATAAATTTTATTTTTAA+GGG + chr1_2:51470094-51470113 None:intergenic 10.0%
!!! TACGATAAATTTTATTTTTA+AGG + chr1_2:51470095-51470114 None:intergenic 10.0%
!! TGAATAATGATTATATATTA+TGG - chr1_2:51470212-51470231 Msa0075870:CDS 10.0%
!!! TTTTATTTTTATTGCAATAT+AGG - chr1_2:51471022-51471041 Msa0075870:CDS 10.0%
!!! AAATTTTATAATATATTGTC+TGG + chr1_2:51472517-51472536 None:intergenic 10.0%
!!! TAATTTTGTTTAATTTTGGT+GGG - chr1_2:51469720-51469739 Msa0075870:three_prime_UTR 15.0%
!! TAATGATTATATATTATGGA+AGG - chr1_2:51470216-51470235 Msa0075870:CDS 15.0%
!! TAAGATATTAGAAAATACAT+GGG + chr1_2:51470511-51470530 None:intergenic 15.0%
!! TTAAGATATTAGAAAATACA+TGG + chr1_2:51470512-51470531 None:intergenic 15.0%
!!! TTTGTAATCATTATTTTGTT+GGG - chr1_2:51471941-51471960 Msa0075870:intron 15.0%
!!! TATAAAATTTTGTATTGTTC+AGG - chr1_2:51472527-51472546 Msa0075870:intron 15.0%
!!! TTTTCCTTTTTGTATAAAAA+AGG - chr1_2:51473077-51473096 Msa0075870:intron 15.0%
!! TGTTTATTCAAAAAAGTAAT+TGG - chr1_2:51473351-51473370 Msa0075870:CDS 15.0%
!!! TTTTCTTTTCTTTTCAGTTA+TGG - chr1_2:51469329-51469348 Msa0075870:three_prime_UTR 20.0%
!! TTATGTTAAGTTACATTCTT+AGG + chr1_2:51469630-51469649 None:intergenic 20.0%
!!! CTAATTTTGTTTAATTTTGG+TGG - chr1_2:51469719-51469738 Msa0075870:three_prime_UTR 20.0%
!! TTATTCATTCATCTTTAAGT+TGG + chr1_2:51470199-51470218 None:intergenic 20.0%
!!! TTTTCTGCTATATTTACATT+CGG + chr1_2:51470308-51470327 None:intergenic 20.0%
!! TGAATGATTAACATTTAATG+AGG - chr1_2:51470839-51470858 Msa0075870:intron 20.0%
!!! ATTGGTATTTTATGTAATCT+TGG - chr1_2:51471232-51471251 Msa0075870:intron 20.0%
!!! AACTGATTTTGGTATTAAAT+TGG + chr1_2:51471401-51471420 None:intergenic 20.0%
!!! ATGTTTATTACAATTAGTCT+GGG - chr1_2:51471501-51471520 Msa0075870:intron 20.0%
!!! TATATTTTTTTTTTGGGACT+TGG - chr1_2:51471641-51471660 Msa0075870:intron 20.0%
!!! ATTTGATTTCTATCTTTGTT+AGG - chr1_2:51471845-51471864 Msa0075870:CDS 20.0%
!! TAATGATTACAAAGAGTAAA+AGG + chr1_2:51471934-51471953 None:intergenic 20.0%
!!! CTTTGTAATCATTATTTTGT+TGG - chr1_2:51471940-51471959 Msa0075870:intron 20.0%
!! AATAAAATCAAATGGCTAAT+GGG + chr1_2:51472012-51472031 None:intergenic 20.0%
!! AATTGTATCTTAATATTCAC+CGG + chr1_2:51472043-51472062 None:intergenic 20.0%
!!! TTTTGTTGAAAACTAGATAT+TGG + chr1_2:51472198-51472217 None:intergenic 20.0%
!! CAAATCAATGACTAAAATTA+AGG + chr1_2:51472882-51472901 None:intergenic 20.0%
!! CAAAAAAAAAGAAAAGACTA+TGG + chr1_2:51472931-51472950 None:intergenic 20.0%
!!! TAGTCTTTTCTTTTTTTTTG+CGG - chr1_2:51472931-51472950 Msa0075870:intron 20.0%
!! TATGGAAAATTTCTTGTAAA+GGG - chr1_2:51473024-51473043 Msa0075870:intron 20.0%
!! CATCACTAATAAATACTATA+TGG + chr1_2:51473198-51473217 None:intergenic 20.0%
!!! ATCATCTGTTTAAGTTGAAT+TGG - chr1_2:51469747-51469766 Msa0075870:three_prime_UTR 25.0%
! ATAGTGTATTACTATTTACC+TGG - chr1_2:51469788-51469807 Msa0075870:three_prime_UTR 25.0%
! TAGTGTATTACTATTTACCT+GGG - chr1_2:51469789-51469808 Msa0075870:three_prime_UTR 25.0%
! GAAAACATTTCAGACTTTAA+TGG - chr1_2:51469924-51469943 Msa0075870:three_prime_UTR 25.0%
!!! TGAATTGTTATTGGTTTTTG+TGG - chr1_2:51470118-51470137 Msa0075870:CDS 25.0%
!!! GAATTGTTATTGGTTTTTGT+GGG - chr1_2:51470119-51470138 Msa0075870:CDS 25.0%
! ATTATATATTATGGAAGGTG+TGG - chr1_2:51470221-51470240 Msa0075870:CDS 25.0%
!! TTATATATTATGGAAGGTGT+GGG - chr1_2:51470222-51470241 Msa0075870:CDS 25.0%
!!! AATATAGCAGAAAAAGTACT+TGG - chr1_2:51470314-51470333 Msa0075870:intron 25.0%
! TAAGACAAAAAAATGCTACT+TGG + chr1_2:51470650-51470669 None:intergenic 25.0%
!!! ACACAATCTAAAACTGATTT+TGG + chr1_2:51471412-51471431 None:intergenic 25.0%
! CATGTTTATTACAATTAGTC+TGG - chr1_2:51471500-51471519 Msa0075870:intron 25.0%
!! TCATCTTTTAACCTTTTGAT+AGG + chr1_2:51471534-51471553 None:intergenic 25.0%
! ATGGAAATATTATACAGAAG+AGG + chr1_2:51471693-51471712 None:intergenic 25.0%
!!! ATACACAGTTTTAGATACAA+TGG + chr1_2:51471712-51471731 None:intergenic 25.0%
! TGGATTATGTCAAATTCTTA+AGG - chr1_2:51471778-51471797 Msa0075870:intron 25.0%
! CTTTGTTAGGTCTATAATTA+AGG - chr1_2:51471858-51471877 Msa0075870:intron 25.0%
! GAATAAAATCAAATGGCTAA+TGG + chr1_2:51472013-51472032 None:intergenic 25.0%
! TCATCGTGAATAAAATCAAA+TGG + chr1_2:51472020-51472039 None:intergenic 25.0%
! CATTGAAAATTAGACCTATT+TGG + chr1_2:51472161-51472180 None:intergenic 25.0%
! GTTGCTGACAAATTTAAATT+TGG + chr1_2:51472317-51472336 None:intergenic 25.0%
! AATTATTCAAATCATGTCGT+TGG - chr1_2:51472472-51472491 Msa0075870:intron 25.0%
! ATCAATGACTAAAATTAAGG+AGG + chr1_2:51472879-51472898 None:intergenic 25.0%
! CTATGGAAAATTTCTTGTAA+AGG - chr1_2:51473023-51473042 Msa0075870:intron 25.0%
!!! CCATCCTTTTTTATACAAAA+AGG + chr1_2:51473084-51473103 None:intergenic 25.0%
!! CCTTTTTGTATAAAAAAGGA+TGG - chr1_2:51473081-51473100 Msa0075870:intron 25.0%
!! TTTTGTATAAAAAAGGATGG+AGG - chr1_2:51473084-51473103 Msa0075870:intron 25.0%
!!! TGATGCTTTTTGTTTATTTG+AGG - chr1_2:51473303-51473322 Msa0075870:CDS 25.0%
!! AATTGGACCTCTTTTTATAA+TGG - chr1_2:51473368-51473387 Msa0075870:CDS 25.0%
!! ATTGGACCTCTTTTTATAAT+GGG - chr1_2:51473369-51473388 Msa0075870:CDS 25.0%
! ATAGTAGCTTAGTATGAATT+GGG + chr1_2:51473433-51473452 None:intergenic 25.0%
! TATAGTAGCTTAGTATGAAT+TGG + chr1_2:51473434-51473453 None:intergenic 25.0%
! AAGCTACTATAATCAAGTAA+TGG - chr1_2:51473443-51473462 Msa0075870:CDS 25.0%
! AGCTACTATAATCAAGTAAT+GGG - chr1_2:51473444-51473463 Msa0075870:CDS 25.0%
! TAAAATTTGTCAAAGTGATG+TGG - chr1_2:51473605-51473624 Msa0075870:five_prime_UTR 25.0%
! AATTTGTTCAAGGAAATCGT+CGG + chr1_2:51469379-51469398 None:intergenic 30.0%
GATTTCCTTGAACAAATTCT+CGG - chr1_2:51469381-51469400 Msa0075870:three_prime_UTR 30.0%
!! TGTTTAAGTTGAATTGGACT+TGG - chr1_2:51469753-51469772 Msa0075870:three_prime_UTR 30.0%
! AATAATTATGCCAGCTTTGT+TGG - chr1_2:51469870-51469889 Msa0075870:three_prime_UTR 30.0%
CTGATACTTTATCTCAGAAA+TGG - chr1_2:51469989-51470008 Msa0075870:three_prime_UTR 30.0%
!! AAATAACTTGTTACTTCACC+AGG + chr1_2:51470033-51470052 None:intergenic 30.0%
TGGTGAAGTAACAAGTTATT+TGG - chr1_2:51470032-51470051 Msa0075870:exon 30.0%
GGTGAAGTAACAAGTTATTT+GGG - chr1_2:51470033-51470052 Msa0075870:exon 30.0%
ATCGTAGCATGAATTGTTAT+TGG - chr1_2:51470109-51470128 Msa0075870:CDS 30.0%
TAAAGATCATACACCAAGTT+AGG + chr1_2:51470163-51470182 None:intergenic 30.0%
GAACTAGCAATAAGTAAGAA+TGG + chr1_2:51470378-51470397 None:intergenic 30.0%
GAAAACATTTCAGACTTTGA+TGG + chr1_2:51470408-51470427 None:intergenic 30.0%
AAGGCAGAAAGGTAAATATA+AGG + chr1_2:51470600-51470619 None:intergenic 30.0%
TATATTTACCTTTCTGCCTT+TGG - chr1_2:51470600-51470619 Msa0075870:intron 30.0%
ATATTTACCTTTCTGCCTTT+GGG - chr1_2:51470601-51470620 Msa0075870:intron 30.0%
! AAGTTTTTGCAGACTTTTCA+TGG - chr1_2:51470680-51470699 Msa0075870:intron 30.0%
! AGTTTTTGCAGACTTTTCAT+GGG - chr1_2:51470681-51470700 Msa0075870:intron 30.0%
AAATCACATTGCTAATTCCT+TGG - chr1_2:51470865-51470884 Msa0075870:intron 30.0%
AAAGAATAGCTGAAAGAATC+AGG - chr1_2:51470950-51470969 Msa0075870:intron 30.0%
AAGAATAGCTGAAAGAATCA+GGG - chr1_2:51470951-51470970 Msa0075870:intron 30.0%
TAAGATACGGAGACAAAATT+TGG - chr1_2:51471120-51471139 Msa0075870:intron 30.0%
!!! TTTCAGCACTGTTTTTGTTT+CGG + chr1_2:51471166-51471185 None:intergenic 30.0%
! AACAAAAACAGTGCTGAAAT+TGG - chr1_2:51471167-51471186 Msa0075870:intron 30.0%
AATTAAATCATCCTTCGAGT+GGG + chr1_2:51471333-51471352 None:intergenic 30.0%
! TTGTGTTTGAGTTTGGAAAA+TGG - chr1_2:51471361-51471380 Msa0075870:intron 30.0%
AAATTTCATGTTCGCCAAAT+CGG + chr1_2:51471579-51471598 None:intergenic 30.0%
!! TTCTGAAGTATAAAGTCTTC+TGG - chr1_2:51471605-51471624 Msa0075870:intron 30.0%
GAAATCAAATGTGAAATCCA+TGG + chr1_2:51471835-51471854 None:intergenic 30.0%
!! TAATTAAGGTTAGCTTGAAC+TGG - chr1_2:51471872-51471891 Msa0075870:intron 30.0%
!! AGTAAAAGGCATTGGTAAAT+AGG + chr1_2:51471920-51471939 None:intergenic 30.0%
! TTACAAAGAGTAAAAGGCAT+TGG + chr1_2:51471928-51471947 None:intergenic 30.0%
!! TTATTTTGTTGGGATTCAAC+TGG - chr1_2:51471951-51471970 Msa0075870:intron 30.0%
! TTGATTTTATTCACGATGAC+CGG - chr1_2:51472021-51472040 Msa0075870:CDS 30.0%
TCGGATAGTTGGATATTATT+GGG + chr1_2:51472106-51472125 None:intergenic 30.0%
TTCGGATAGTTGGATATTAT+TGG + chr1_2:51472107-51472126 None:intergenic 30.0%
AATAATATCCAACTATCCGA+AGG - chr1_2:51472106-51472125 Msa0075870:intron 30.0%
ATAATATCCAACTATCCGAA+GGG - chr1_2:51472107-51472126 Msa0075870:intron 30.0%
TCAATTGTCTTTCACCAAAT+AGG - chr1_2:51472144-51472163 Msa0075870:intron 30.0%
! TGTTCTTTTGTCTATCTTTC+AGG - chr1_2:51472370-51472389 Msa0075870:intron 30.0%
! TTTTGTATTGTTCAGGAAGA+AGG - chr1_2:51472534-51472553 Msa0075870:intron 30.0%
TGACTAAAATTAAGGAGGTT+AGG + chr1_2:51472874-51472893 None:intergenic 30.0%
CATAAAGTTGCATTCAAAGT+AGG - chr1_2:51472902-51472921 Msa0075870:intron 30.0%
! TATCAGCTTTTGTCAATACA+GGG - chr1_2:51472957-51472976 Msa0075870:intron 30.0%
! AATTTTCCATAGACAGGATA+GGG + chr1_2:51473015-51473034 None:intergenic 30.0%
! AAATTTTCCATAGACAGGAT+AGG + chr1_2:51473016-51473035 None:intergenic 30.0%
! ACAAGAAATTTTCCATAGAC+AGG + chr1_2:51473021-51473040 None:intergenic 30.0%
!!! GGGTTTTTAGTTTTTGTAGT+GGG - chr1_2:51473140-51473159 Msa0075870:intron 30.0%
TATTAGTGATGTAACTCTAG+AGG - chr1_2:51473207-51473226 Msa0075870:CDS 30.0%
TGTTGAAGTGCAATAGATAA+TGG - chr1_2:51473238-51473257 Msa0075870:CDS 30.0%
!! AAAGCATCATCATTTTCTTC+TGG + chr1_2:51473292-51473311 None:intergenic 30.0%
! TCTGAGTGACTAGTTGAAAA+TGG + chr1_2:51469244-51469263 None:intergenic 35.0%
!! AGTTGAATTGGACTTGGTTT+TGG - chr1_2:51469759-51469778 Msa0075870:three_prime_UTR 35.0%
AAACTAGCAGCAAGTAAGAA+TGG - chr1_2:51469954-51469973 Msa0075870:three_prime_UTR 35.0%
!!! TTGTTATTGGTTTTTGTGGG+TGG - chr1_2:51470122-51470141 Msa0075870:CDS 35.0%
! TTTTTGTGGGTGGTTCATTT+TGG - chr1_2:51470132-51470151 Msa0075870:CDS 35.0%
TACTGTTGGCAATGTCTAAA+CGG + chr1_2:51470473-51470492 None:intergenic 35.0%
CATTAGCATTAAGCATACCA+AGG + chr1_2:51470885-51470904 None:intergenic 35.0%
CTTCAGAGTAAACACGAAAA+GGG + chr1_2:51471095-51471114 None:intergenic 35.0%
ACTTCAGAGTAAACACGAAA+AGG + chr1_2:51471096-51471115 None:intergenic 35.0%
!! CTCTGAAGTGAGATAAGATA+CGG - chr1_2:51471107-51471126 Msa0075870:intron 35.0%
!!! TTCAGCACTGTTTTTGTTTC+GGG + chr1_2:51471165-51471184 None:intergenic 35.0%
AGTATTGTTCAATGCGTACT+TGG - chr1_2:51471257-51471276 Msa0075870:intron 35.0%
GAATTAAATCATCCTTCGAG+TGG + chr1_2:51471334-51471353 None:intergenic 35.0%
! TAACTCGTTGTGTTTGAGTT+TGG - chr1_2:51471354-51471373 Msa0075870:intron 35.0%
! ACCTCTCATGTTCTGTTTTA+CGG - chr1_2:51471467-51471486 Msa0075870:intron 35.0%
TGGGAAACAATCCTATCAAA+AGG - chr1_2:51471520-51471539 Msa0075870:intron 35.0%
!!! TTTTTTTTGGGACTTGGTTG+TGG - chr1_2:51471647-51471666 Msa0075870:intron 35.0%
ATTCTTAAGGCTTCAAGTGA+AGG - chr1_2:51471791-51471810 Msa0075870:intron 35.0%
TGGTTAAAGTAGCAACAACA+TGG + chr1_2:51472083-51472102 None:intergenic 35.0%
GATAGTTGGATATTATTGGG+TGG + chr1_2:51472103-51472122 None:intergenic 35.0%
TGATTTCTCTAGACACATGT+GGG - chr1_2:51472234-51472253 Msa0075870:intron 35.0%
TGTACATGAAAGTGAAAGCA+AGG - chr1_2:51472278-51472297 Msa0075870:intron 35.0%
!! GTTTTGAGCATGAGTAGATT+GGG - chr1_2:51472392-51472411 Msa0075870:intron 35.0%
AAGCTCATGGAAGAAAATGT+TGG - chr1_2:51472627-51472646 Msa0075870:intron 35.0%
AGCTCATGGAAGAAAATGTT+GGG - chr1_2:51472628-51472647 Msa0075870:intron 35.0%
GATGCAGTTTCTTCAATCAA+AGG - chr1_2:51472656-51472675 Msa0075870:intron 35.0%
AGTTTCAGGCTTAACTATAC+TGG + chr1_2:51472745-51472764 None:intergenic 35.0%
AGGAACAGACAAATAACTTG+CGG + chr1_2:51472854-51472873 None:intergenic 35.0%
! GTATCAGCTTTTGTCAATAC+AGG - chr1_2:51472956-51472975 Msa0075870:intron 35.0%
TAAAAAAGGATGGAGGTTAG+TGG - chr1_2:51473091-51473110 Msa0075870:intron 35.0%
TGATGTAAGTGCTTTGATAG+TGG - chr1_2:51473118-51473137 Msa0075870:intron 35.0%
! GATGTAAGTGCTTTGATAGT+GGG - chr1_2:51473119-51473138 Msa0075870:intron 35.0%
!! ATGTAAGTGCTTTGATAGTG+GGG - chr1_2:51473120-51473139 Msa0075870:intron 35.0%
!!! GGGGTTTTTAGTTTTTGTAG+TGG - chr1_2:51473139-51473158 Msa0075870:intron 35.0%
!! TTAGTTTTTGTAGTGGGATG+TGG - chr1_2:51473146-51473165 Msa0075870:intron 35.0%
!! TAGTTTTTGTAGTGGGATGT+GGG - chr1_2:51473147-51473166 Msa0075870:intron 35.0%
!! AATGGTTGCTTTAAGAATGC+TGG - chr1_2:51473256-51473275 Msa0075870:CDS 35.0%
TCTCCTCCCATTATAAAAAG+AGG + chr1_2:51473378-51473397 None:intergenic 35.0%
!! TTTTATAATGGGAGGAGAGA+TGG - chr1_2:51473380-51473399 Msa0075870:CDS 35.0%
AGCTTAGTATGAATTGGGTT+AGG + chr1_2:51473428-51473447 None:intergenic 35.0%
! TTACTGATTAAGAGCCACTT+GGG + chr1_2:51473482-51473501 None:intergenic 35.0%
! CTTGTTTGTTGACTATTGGA+TGG - chr1_2:51473628-51473647 Msa0075870:five_prime_UTR 35.0%
! TTGTTGACTATTGGATGGAT+TGG - chr1_2:51473633-51473652 Msa0075870:five_prime_UTR 35.0%
! GTTTCGCTTTATTGGATGCT+TGG + chr1_2:51469187-51469206 None:intergenic 40.0%
TCAGACACAAGACACAAGAA+GGG + chr1_2:51469212-51469231 None:intergenic 40.0%
TTCAGACACAAGACACAAGA+AGG + chr1_2:51469213-51469232 None:intergenic 40.0%
! GAAGACCGAGAATTTGTTCA+AGG + chr1_2:51469389-51469408 None:intergenic 40.0%
!! TCATGCACCGGTTTATCATT+TGG - chr1_2:51469506-51469525 Msa0075870:three_prime_UTR 40.0%
!! CATGCACCGGTTTATCATTT+GGG - chr1_2:51469507-51469526 Msa0075870:three_prime_UTR 40.0%
!! ATGCACCGGTTTATCATTTG+GGG - chr1_2:51469508-51469527 Msa0075870:three_prime_UTR 40.0%
CTCAACCCCAAATGATAAAC+CGG + chr1_2:51469516-51469535 None:intergenic 40.0%
! TTATCATTTGGGGTTGAGCT+TGG - chr1_2:51469518-51469537 Msa0075870:three_prime_UTR 40.0%
TTGTATCAACAAGATCCTCC+CGG + chr1_2:51469605-51469624 None:intergenic 40.0%
TTACTATTTACCTGGGTCTC+AGG - chr1_2:51469796-51469815 Msa0075870:three_prime_UTR 40.0%
!! AATTATGCCAGCTTTGTTGG+TGG - chr1_2:51469873-51469892 Msa0075870:three_prime_UTR 40.0%
! TATTATGGAAGGTGTGGGAT+TGG - chr1_2:51470227-51470246 Msa0075870:CDS 40.0%
AAGCTACTACCAACTGAGAA+TGG - chr1_2:51470447-51470466 Msa0075870:intron 40.0%
TAGACATTGCCAACAGTACT+TGG - chr1_2:51470475-51470494 Msa0075870:intron 40.0%
! AAAACGACTCCAAGTACTGT+TGG + chr1_2:51470487-51470506 None:intergenic 40.0%
!!! TCTGCGCAACTGTTTTTGAA+CGG + chr1_2:51470929-51470948 None:intergenic 40.0%
ACTTGTTCCTAGTGTCAACA+AGG - chr1_2:51470984-51471003 Msa0075870:intron 40.0%
TCATGTACCTTGTTGACACT+AGG + chr1_2:51470994-51471013 None:intergenic 40.0%
TCTATAGAACTTGCGCAATC+AGG - chr1_2:51471060-51471079 Msa0075870:intron 40.0%
! TGCTGAAATTGGAGCTTTGT+GGG - chr1_2:51471178-51471197 Msa0075870:intron 40.0%
!! GACTGATTTTCCTTGTTGCT+AGG - chr1_2:51471208-51471227 Msa0075870:intron 40.0%
! TTTTCCTTGTTGCTAGGCAT+TGG - chr1_2:51471214-51471233 Msa0075870:intron 40.0%
AATACCAATGCCTAGCAACA+AGG + chr1_2:51471221-51471240 None:intergenic 40.0%
! CTATAGTTCTACACAGACAC+TGG - chr1_2:51471295-51471314 Msa0075870:intron 40.0%
! ACATGAGAGGTATGCTTATC+TGG + chr1_2:51471458-51471477 None:intergenic 40.0%
ACCGTAAAACAGAACATGAG+AGG + chr1_2:51471471-51471490 None:intergenic 40.0%
TCTGCATATAGTCTCCGATT+TGG - chr1_2:51471562-51471581 Msa0075870:intron 40.0%
ATCCACAATTTCATCCAGCA+TGG + chr1_2:51471763-51471782 None:intergenic 40.0%
CATGTGTCTAGAGAAATCAC+TGG + chr1_2:51472233-51472252 None:intergenic 40.0%
GTGATTTCTCTAGACACATG+TGG - chr1_2:51472233-51472252 Msa0075870:intron 40.0%
!!! GGTTTTGAGCATGAGTAGAT+TGG - chr1_2:51472391-51472410 Msa0075870:intron 40.0%
TTACCTCGACTGACGATAAT+GGG + chr1_2:51472454-51472473 None:intergenic 40.0%
ATTACCTCGACTGACGATAA+TGG + chr1_2:51472455-51472474 None:intergenic 40.0%
!! GAGCTTAGCTACTTGCTTTT+CGG + chr1_2:51472613-51472632 None:intergenic 40.0%
AAAGCAAGTAGCTAAGCTCA+TGG - chr1_2:51472614-51472633 Msa0075870:intron 40.0%
GCTCATGGAAGAAAATGTTG+GGG - chr1_2:51472629-51472648 Msa0075870:intron 40.0%
AATATACCAATCGCAACCGT+CGG - chr1_2:51472713-51472732 Msa0075870:intron 40.0%
TATGGAGGAGGAATAGTTTC+AGG + chr1_2:51472759-51472778 None:intergenic 40.0%
! GGAACAGACAAATAACTTGC+GGG + chr1_2:51472853-51472872 None:intergenic 40.0%
!!! AGGGTCTGCTTGCATTTTTT+AGG + chr1_2:51472996-51473015 None:intergenic 40.0%
TGGGACCTTGTAAAAGGTTA+GGG - chr1_2:51473166-51473185 Msa0075870:intron 40.0%
! TACCACCCTAACCTTTTACA+AGG + chr1_2:51473174-51473193 None:intergenic 40.0%
!! GGACCTCTTTTTATAATGGG+AGG - chr1_2:51473372-51473391 Msa0075870:CDS 40.0%
! CTTACTGATTAAGAGCCACT+TGG + chr1_2:51473483-51473502 None:intergenic 40.0%
TCACTTGAGAGTTGAGAATC+AGG + chr1_2:51473512-51473531 None:intergenic 40.0%
! CTCAACTTTTACGTGCTGTA+TGG - chr1_2:51473545-51473564 Msa0075870:five_prime_UTR 40.0%
ACGTGCTGTATGGATATGAA+TGG - chr1_2:51473555-51473574 Msa0075870:five_prime_UTR 40.0%
!! GTGGCTTGTTTGTTGACTAT+TGG - chr1_2:51473624-51473643 Msa0075870:five_prime_UTR 40.0%
AGACACAAGACACAAGAAGG+GGG + chr1_2:51469210-51469229 None:intergenic 45.0%
CAGACACAAGACACAAGAAG+GGG + chr1_2:51469211-51469230 None:intergenic 45.0%
TTGTTCAAGGAAATCGTCGG+CGG + chr1_2:51469376-51469395 None:intergenic 45.0%
GAGTTAAGCTGCAGCATCAT+CGG + chr1_2:51469447-51469466 None:intergenic 45.0%
ATGATGCTGCAGCTTAACTC+CGG - chr1_2:51469447-51469466 Msa0075870:three_prime_UTR 45.0%
TTGAAGCCTGATGAAGCTTC+CGG - chr1_2:51469564-51469583 Msa0075870:three_prime_UTR 45.0%
GTCTCAGGTTTGATTCTCCT+CGG - chr1_2:51469811-51469830 Msa0075870:three_prime_UTR 45.0%
!! ATTCTCCTCGGTGCCAAATT+GGG - chr1_2:51469823-51469842 Msa0075870:three_prime_UTR 45.0%
CTAAATTCGCCCACCCAATT+TGG + chr1_2:51469839-51469858 None:intergenic 45.0%
TAAGCTACCACCAACAAAGC+TGG + chr1_2:51469883-51469902 None:intergenic 45.0%
CATTCTTCAATTCAGCTGCC+TGG - chr1_2:51470012-51470031 Msa0075870:three_prime_UTR 45.0%
AGGGTCATGCTATGACAAGT+TGG + chr1_2:51470075-51470094 None:intergenic 45.0%
!!! CATTTTGGTAGCGCCTAACT+TGG - chr1_2:51470147-51470166 Msa0075870:CDS 45.0%
TCTAAACGGCCATTCTCAGT+TGG + chr1_2:51470459-51470478 None:intergenic 45.0%
TTTACCTTTCTGCCTTTGGG+AGG - chr1_2:51470604-51470623 Msa0075870:intron 45.0%
AGAACTTGCGCAATCAGGTA+AGG - chr1_2:51471065-51471084 Msa0075870:intron 45.0%
GTGCTGAAATTGGAGCTTTG+TGG - chr1_2:51471177-51471196 Msa0075870:intron 45.0%
! GCTGAAATTGGAGCTTTGTG+GGG - chr1_2:51471179-51471198 Msa0075870:intron 45.0%
! TGAGAGGTATGCTTATCTGG+AGG + chr1_2:51471455-51471474 None:intergenic 45.0%
GTGGTCTGCTGTATTTCTCT+TGG - chr1_2:51471666-51471685 Msa0075870:intron 45.0%
TGCCATGCTGGATGAAATTG+TGG - chr1_2:51471758-51471777 Msa0075870:intron 45.0%
! TAGTGCTTTTGTGAGCTCCA+TGG - chr1_2:51471815-51471834 Msa0075870:CDS 45.0%
!! CTGAGATGCCACTTTGGTAT+GGG - chr1_2:51471985-51472004 Msa0075870:intron 45.0%
! TAATGGGTCCCATACCAAAG+TGG + chr1_2:51471996-51472015 None:intergenic 45.0%
GTGAAAGCAAGGCTCTTCAT+TGG - chr1_2:51472289-51472308 Msa0075870:intron 45.0%
TTGAGCATGAGTAGATTGGG+TGG - chr1_2:51472395-51472414 Msa0075870:intron 45.0%
AATGGGATGTCAGTTACCAG+TGG + chr1_2:51472437-51472456 None:intergenic 45.0%
AGGAAGAAGGAAGTGAGAGT+GGG - chr1_2:51472547-51472566 Msa0075870:intron 45.0%
TGGGAGAAGTGGTCTAATGA+TGG - chr1_2:51472585-51472604 Msa0075870:intron 45.0%
ATTGCAGATGCCAGTGAGAT+GGG + chr1_2:51472696-51472715 None:intergenic 45.0%
TATTGCAGATGCCAGTGAGA+TGG + chr1_2:51472697-51472716 None:intergenic 45.0%
ACTATACTGGAGTTGTCCGA+CGG + chr1_2:51472732-51472751 None:intergenic 45.0%
! CATTGTCGAAGGCATGTCTA+TGG + chr1_2:51472777-51472796 None:intergenic 45.0%
GTGGGACCTTGTAAAAGGTT+AGG - chr1_2:51473165-51473184 Msa0075870:intron 45.0%
GACCTTGTAAAAGGTTAGGG+TGG - chr1_2:51473169-51473188 Msa0075870:intron 45.0%
TTGAGGTGTGTGTATGTGTG+TGG - chr1_2:51473320-51473339 Msa0075870:CDS 45.0%
TGAGGTGTGTGTATGTGTGT+GGG - chr1_2:51473321-51473340 Msa0075870:CDS 45.0%
GCACGTAAAAGTTGAGAGCA+TGG + chr1_2:51473541-51473560 None:intergenic 45.0%
GAAGGGGGGTTTCGCTTTAT+TGG + chr1_2:51469195-51469214 None:intergenic 50.0%
GACACAAGACACAAGAAGGG+GGG + chr1_2:51469209-51469228 None:intergenic 50.0%
TGTTCAAGGAAATCGTCGGC+GGG + chr1_2:51469375-51469394 None:intergenic 50.0%
TTGAGCTTGGACCAGGGTAA+AGG - chr1_2:51469531-51469550 Msa0075870:three_prime_UTR 50.0%
TGAAGCCTGATGAAGCTTCC+GGG - chr1_2:51469565-51469584 Msa0075870:three_prime_UTR 50.0%
GAGAATCAAACCTGAGACCC+AGG + chr1_2:51469809-51469828 None:intergenic 50.0%
!! GATTCTCCTCGGTGCCAAAT+TGG - chr1_2:51469822-51469841 Msa0075870:three_prime_UTR 50.0%
!! AGGTCCTGGAGAAGTGTTGT+TGG - chr1_2:51470624-51470643 Msa0075870:intron 50.0%
TTGGCCAACAACACTTCTCC+AGG + chr1_2:51470631-51470650 None:intergenic 50.0%
GCAGGAACTGTAGTAGGCAT+GGG + chr1_2:51470710-51470729 None:intergenic 50.0%
AGCAGGAACTGTAGTAGGCA+TGG + chr1_2:51470711-51470730 None:intergenic 50.0%
CTTGCGCAATCAGGTAAGGA+TGG - chr1_2:51471069-51471088 Msa0075870:intron 50.0%
CATGTCTGTTTCCCACTCGA+AGG - chr1_2:51471319-51471338 Msa0075870:intron 50.0%
CCATACCAAAGTGGCATCTC+AGG + chr1_2:51471987-51472006 None:intergenic 50.0%
!! CCTGAGATGCCACTTTGGTA+TGG - chr1_2:51471984-51472003 Msa0075870:intron 50.0%
GTTGAAGCCCTTCGGATAGT+TGG + chr1_2:51472117-51472136 None:intergenic 50.0%
TATCCGAAGGGCTTCAACTG+TGG - chr1_2:51472119-51472138 Msa0075870:intron 50.0%
AGTCCACAGTTGAAGCCCTT+CGG + chr1_2:51472125-51472144 None:intergenic 50.0%
ATGAGTAGATTGGGTGGAGC+CGG - chr1_2:51472401-51472420 Msa0075870:intron 50.0%
CATCCCATTATCGTCAGTCG+AGG - chr1_2:51472448-51472467 Msa0075870:intron 50.0%
CAGGAAGAAGGAAGTGAGAG+TGG - chr1_2:51472546-51472565 Msa0075870:intron 50.0%
TGGGAGAAACCAACCAGCTT+GGG - chr1_2:51472566-51472585 Msa0075870:intron 50.0%
TTAGACCACTTCTCCCAAGC+TGG + chr1_2:51472582-51472601 None:intergenic 50.0%
CTGCATAATGCCCATCTCAC+TGG - chr1_2:51472683-51472702 Msa0075870:intron 50.0%
! TGTCGAAGGCATGTCTATGG+AGG + chr1_2:51472774-51472793 None:intergenic 50.0%
GACATGCCTTCGACAATGCT+TGG - chr1_2:51472779-51472798 Msa0075870:intron 50.0%
! GATGTGCCAAGCATTGTCGA+AGG + chr1_2:51472788-51472807 None:intergenic 50.0%
ATGCTTGGCACATCATCCAG+TGG - chr1_2:51472794-51472813 Msa0075870:intron 50.0%
! TAGTAGATGAGGCGCTCGAT+GGG + chr1_2:51472821-51472840 None:intergenic 50.0%
AGCGCCTCATCTACTACTTC+TGG - chr1_2:51472825-51472844 Msa0075870:intron 50.0%
GCGCCTCATCTACTACTTCT+GGG - chr1_2:51472826-51472845 Msa0075870:intron 50.0%
GGTCCCAGAAGTAGTAGATG+AGG + chr1_2:51472832-51472851 None:intergenic 50.0%
AGCAGACCCTATCCTGTCTA+TGG - chr1_2:51473006-51473025 Msa0075870:intron 50.0%
GGGATGTGGGACCTTGTAAA+AGG - chr1_2:51473160-51473179 Msa0075870:intron 50.0%
GGAACTTGATTGTGCCCAAG+TGG - chr1_2:51473465-51473484 Msa0075870:exon 50.0%
GAAATCGTCGGCGGGTGTAT+CGG + chr1_2:51469367-51469386 None:intergenic 55.0%
! CAGCATCATCGGAGAAGCGT+CGG + chr1_2:51469436-51469455 None:intergenic 55.0%
TGGAGGAGGGTTTCATGCAC+CGG - chr1_2:51469494-51469513 Msa0075870:three_prime_UTR 55.0%
! TTTGGGGTTGAGCTTGGACC+AGG - chr1_2:51469524-51469543 Msa0075870:three_prime_UTR 55.0%
TTGGGGTTGAGCTTGGACCA+GGG - chr1_2:51469525-51469544 Msa0075870:three_prime_UTR 55.0%
AGCTTGGACCAGGGTAAAGG+CGG - chr1_2:51469534-51469553 Msa0075870:three_prime_UTR 55.0%
AAAACCCTCCGCCTTTACCC+TGG + chr1_2:51469545-51469564 None:intergenic 55.0%
CTGATGAAGCTTCCGGGAGT+GGG - chr1_2:51469571-51469590 Msa0075870:three_prime_UTR 55.0%
!! TCCTCGGTGCCAAATTGGGT+GGG - chr1_2:51469827-51469846 Msa0075870:three_prime_UTR 55.0%
! ATGGAAGGTGTGGGATTGGC+TGG - chr1_2:51470231-51470250 Msa0075870:CDS 55.0%
AGGACCTCCCAAAGGCAGAA+AGG + chr1_2:51470611-51470630 None:intergenic 55.0%
! TTTCTGCCTTTGGGAGGTCC+TGG - chr1_2:51470610-51470629 Msa0075870:intron 55.0%
ACTTCTCCAGGACCTCCCAA+AGG + chr1_2:51470619-51470638 None:intergenic 55.0%
GGAGCAGCAGGAACTGTAGT+AGG + chr1_2:51470716-51470735 None:intergenic 55.0%
ACTCTAGGTCGCATTGCTGG+TGG + chr1_2:51470743-51470762 None:intergenic 55.0%
CAGCAATGCGACCTAGAGTG+CGG - chr1_2:51470744-51470763 Msa0075870:intron 55.0%
AGCAATGCGACCTAGAGTGC+GGG - chr1_2:51470745-51470764 Msa0075870:intron 55.0%
ATCCCCACAGCATCGCTGAA+AGG - chr1_2:51470789-51470808 Msa0075870:intron 55.0%
TCCCCACAGCATCGCTGAAA+GGG - chr1_2:51470790-51470809 Msa0075870:intron 55.0%
ACCCTTTCAGCGATGCTGTG+GGG + chr1_2:51470794-51470813 None:intergenic 55.0%
CACCCTTTCAGCGATGCTGT+GGG + chr1_2:51470795-51470814 None:intergenic 55.0%
TCACCCTTTCAGCGATGCTG+TGG + chr1_2:51470796-51470815 None:intergenic 55.0%
! GCGAACCTGAGATGCCACTT+TGG - chr1_2:51471979-51471998 Msa0075870:intron 55.0%
GTGGGAGAAACCAACCAGCT+TGG - chr1_2:51472565-51472584 Msa0075870:intron 55.0%
ACCAACCAGCTTGGGAGAAG+TGG - chr1_2:51472574-51472593 Msa0075870:intron 55.0%
ACCACTTCTCCCAAGCTGGT+TGG + chr1_2:51472578-51472597 None:intergenic 55.0%
AGTTGTCCGACGGTTGCGAT+TGG + chr1_2:51472722-51472741 None:intergenic 55.0%
! CGAAGGCATGTCTATGGAGG+AGG + chr1_2:51472771-51472790 None:intergenic 55.0%
! GTAGTAGATGAGGCGCTCGA+TGG + chr1_2:51472822-51472841 None:intergenic 55.0%
CCGTCGGCGGAGGTGAAATT+CGG + chr1_2:51469411-51469430 None:intergenic 60.0%
CCGAATTTCACCTCCGCCGA+CGG - chr1_2:51469408-51469427 Msa0075870:three_prime_UTR 60.0%
TTGGACCAGGGTAAAGGCGG+AGG - chr1_2:51469537-51469556 Msa0075870:three_prime_UTR 60.0%
TGGACCAGGGTAAAGGCGGA+GGG - chr1_2:51469538-51469557 Msa0075870:three_prime_UTR 60.0%
CCACTCCCGGAAGCTTCATC+AGG + chr1_2:51469573-51469592 None:intergenic 60.0%
CCTGATGAAGCTTCCGGGAG+TGG - chr1_2:51469570-51469589 Msa0075870:three_prime_UTR 60.0%
!! CTCCTCGGTGCCAAATTGGG+TGG - chr1_2:51469826-51469845 Msa0075870:three_prime_UTR 60.0%
GGTCGCATTGCTGGTGGTTG+TGG + chr1_2:51470737-51470756 None:intergenic 60.0%
CGCACTCTAGGTCGCATTGC+TGG + chr1_2:51470746-51470765 None:intergenic 60.0%
CCTCTTCTTGCCCGCACTCT+AGG + chr1_2:51470758-51470777 None:intergenic 60.0%
CCTAGAGTGCGGGCAAGAAG+AGG - chr1_2:51470755-51470774 Msa0075870:intron 60.0%
AGTGCGGGCAAGAAGAGGAC+AGG - chr1_2:51470760-51470779 Msa0075870:intron 60.0%
GACTGATCGAGCTGCCATGC+TGG - chr1_2:51471746-51471765 Msa0075870:intron 60.0%
TACCAGTGGAGCCACTGCAC+CGG + chr1_2:51472423-51472442 None:intergenic 60.0%
TCGTCGGCGGGTGTATCGGA+AGG + chr1_2:51469363-51469382 None:intergenic 65.0%
!! AGAAGCGTCGGTTCCGTCGG+CGG + chr1_2:51469424-51469443 None:intergenic 65.0%
!! CGGAGAAGCGTCGGTTCCGT+CGG + chr1_2:51469427-51469446 None:intergenic 65.0%
AAGGTGAGAGGCAGCGTCGC+CGG + chr1_2:51469469-51469488 None:intergenic 65.0%
TCCTCCAGCGCCAAGGTGAG+AGG + chr1_2:51469481-51469500 None:intergenic 65.0%
! TCTCACCTTGGCGCTGGAGG+AGG - chr1_2:51469480-51469499 Msa0075870:three_prime_UTR 65.0%
! CTCACCTTGGCGCTGGAGGA+GGG - chr1_2:51469481-51469500 Msa0075870:three_prime_UTR 65.0%
GAAACCCTCCTCCAGCGCCA+AGG + chr1_2:51469488-51469507 None:intergenic 65.0%
CCGGAAACGCTTCCCACTCC+CGG + chr1_2:51469586-51469605 None:intergenic 65.0%
!! CCGGGAGTGGGAAGCGTTTC+CGG - chr1_2:51469583-51469602 Msa0075870:three_prime_UTR 65.0%
!! CGGGAGTGGGAAGCGTTTCC+GGG - chr1_2:51469584-51469603 Msa0075870:three_prime_UTR 65.0%
!! GAGTGGGAAGCGTTTCCGGG+AGG - chr1_2:51469587-51469606 Msa0075870:three_prime_UTR 65.0%
GCCCACCCAATTTGGCACCG+AGG + chr1_2:51469831-51469850 None:intergenic 65.0%
GCTGGTGGTTGTGGAGCAGC+AGG + chr1_2:51470728-51470747 None:intergenic 65.0%
ATTGGGTGGAGCCGGTGCAG+TGG - chr1_2:51472409-51472428 Msa0075870:intron 65.0%
GGCGACGCTGCCTCTCACCT+TGG - chr1_2:51469468-51469487 Msa0075870:three_prime_UTR 70.0%
GCTGCCTCTCACCTTGGCGC+TGG - chr1_2:51469474-51469493 Msa0075870:three_prime_UTR 70.0%
! GCCTCTCACCTTGGCGCTGG+AGG - chr1_2:51469477-51469496 Msa0075870:three_prime_UTR 70.0%
AGCCGGTGCAGTGGCTCCAC+TGG - chr1_2:51472418-51472437 Msa0075870:intron 70.0%
! GAGGCGCTCGATGGGACCAC+TGG + chr1_2:51472813-51472832 None:intergenic 70.0%
!! AGCGTCGGTTCCGTCGGCGG+AGG + chr1_2:51469421-51469440 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 51469158 51473657 51469158 ID=Msa0075870;Name=Msa0075870
chr1_2 mRNA 51469158 51473657 51469158 ID=Msa0075870-mRNA-1;Parent=Msa0075870;Name=Msa0075870-mRNA-1;_AED=0.12;_eAED=0.12;_QI=190|1|1|1|1|1|6|878|282
chr1_2 exon 51469158 51470266 51469158 ID=Msa0075870-mRNA-1:exon:15867;Parent=Msa0075870-mRNA-1
chr1_2 exon 51470346 51470423 51470346 ID=Msa0075870-mRNA-1:exon:15866;Parent=Msa0075870-mRNA-1
chr1_2 exon 51471003 51471068 51471003 ID=Msa0075870-mRNA-1:exon:15865;Parent=Msa0075870-mRNA-1
chr1_2 exon 51471810 51471875 51471810 ID=Msa0075870-mRNA-1:exon:15864;Parent=Msa0075870-mRNA-1
chr1_2 exon 51472004 51472123 51472004 ID=Msa0075870-mRNA-1:exon:15863;Parent=Msa0075870-mRNA-1
chr1_2 exon 51473180 51473657 51473180 ID=Msa0075870-mRNA-1:exon:15862;Parent=Msa0075870-mRNA-1
chr1_2 five_prime_UTR 51473468 51473657 51473468 ID=Msa0075870-mRNA-1:five_prime_utr;Parent=Msa0075870-mRNA-1
chr1_2 CDS 51473180 51473467 51473180 ID=Msa0075870-mRNA-1:cds;Parent=Msa0075870-mRNA-1
chr1_2 CDS 51472004 51472123 51472004 ID=Msa0075870-mRNA-1:cds;Parent=Msa0075870-mRNA-1
chr1_2 CDS 51471810 51471875 51471810 ID=Msa0075870-mRNA-1:cds;Parent=Msa0075870-mRNA-1
chr1_2 CDS 51471003 51471068 51471003 ID=Msa0075870-mRNA-1:cds;Parent=Msa0075870-mRNA-1
chr1_2 CDS 51470346 51470423 51470346 ID=Msa0075870-mRNA-1:cds;Parent=Msa0075870-mRNA-1
chr1_2 CDS 51470036 51470266 51470036 ID=Msa0075870-mRNA-1:cds;Parent=Msa0075870-mRNA-1
chr1_2 three_prime_UTR 51469158 51470035 51469158 ID=Msa0075870-mRNA-1:three_prime_utr;Parent=Msa0075870-mRNA-1
Gene Sequence

>Msa0075870

ATGGCGAATCATCCTTCCGATACACCCGCCGACGATTTCCTTGAACAAATTCTCGGTCTTCCGAATTTCACCTCCGCCGACGGAACCGACGCTTCTCCGATGATGCTGCAGCTTAACTCCGGCGACGCTGCCTCTCACCTTGGCGCTGGAGGAGGGTTTCATGCACCGGTTTATCATTTGGGGTTGAGCTTGGACCAGGGTAAAGGCGGAGGGTTTTTGAAGCCTGATGAAGCTTCCGGGAGTGGGAAGCGTTTCCGGGAGGATCTTGTTGATACAAGACCTAAGAATACTTTTCATGGGCAACCCATGCCTACTACAGTTCCTGCTGCTCCACAACCACCAGCAATGCGACCTAGAGTGCGGGCAAGAAGAGGACAGGCTACAGATCCCCACAGCATCGCTGAAAGGTTGCGCAGAGAAAGAATAGCTGAAAGAATCAGGGCTTTGCAAGAACTTGTTCCTAGTGTCAACAAGACTGATCGAGCTGCCATGCTGGATGAAATTGTGGATTATGTCAAATTCTTAAGGCTTCAAGTGAAGGTTTTGAGCATGAGTAGATTGGGTGGAGCCGGTGCAGTGGCTCCACTGGTAACTGACATCCCATTATCGTCAGTCGAGGAAGAAGGAAGTGAGAGTGGGAGAAACCAACCAGCTTGGGAGAAGTGGTCTAATGATGGCACCGAAAAGCAAGTAGCTAAGCTCATGGAAGAAAATGTTGGGGCTGCGATGCAGTTTCTTCAATCAAAGGCTCTCTGCATAATGCCCATCTCACTGGCATCTGCAATATACCAATCGCAACCGTCGGACAACTCCAGTATAGTTAAGCCTGAAACTATTCCTCCTCCATAG
Protein sequence

>Msa0075870

MANHPSDTPADDFLEQILGLPNFTSADGTDASPMMLQLNSGDAASHLGAGGGFHAPVYHLGLSLDQGKGGGFLKPDEASGSGKRFREDLVDTRPKNTFHGQPMPTTVPAAPQPPAMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEEGSESGRNQPAWEKWSNDGTEKQVAKLMEENVGAAMQFLQSKALCIMPISLASAIYQSQPSDNSSIVKPETIPPP*