AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0076190

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0076190 MtrunA17_Chr1g0185121 89.810 422 21 3 1 416 1 406 0.0 739
Msa0076190 MtrunA17_Chr2g0330171 57.143 329 108 10 64 379 54 362 6.73e-109 328
Msa0076190 MtrunA17_Chr1g0191991 59.396 298 87 5 64 344 71 351 1.25e-108 330
Msa0076190 MtrunA17_Chr8g0342421 53.889 360 118 10 6 343 18 351 8.34e-108 327
Msa0076190 MtrunA17_Chr1g0181381 85.119 168 21 1 66 233 48 211 2.61e-107 325
Msa0076190 MtrunA17_Chr1g0151351 56.690 284 89 5 66 349 51 300 1.47e-106 322
Msa0076190 MtrunA17_Chr1g0162971 49.340 379 122 9 66 395 51 408 1.09e-105 319
Msa0076190 MtrunA17_Chr7g0263941 59.859 284 83 8 66 343 44 302 3.90e-102 309
Msa0076190 MtrunA17_Chr4g0040571 86.792 159 20 1 64 222 47 204 8.57e-102 311
Msa0076190 MtrunA17_Chr7g0268961 56.209 306 87 6 66 344 32 317 1.46e-101 310
Msa0076190 MtrunA17_Chr4g0029521 55.034 298 114 7 66 343 48 345 2.76e-101 310
Msa0076190 MtrunA17_Chr1g0199101 64.940 251 66 8 66 311 57 290 5.10e-101 310
Msa0076190 MtrunA17_Chr8g0373541 68.493 219 46 5 6 224 4 199 1.19e-100 309
Msa0076190 MtrunA17_Chr2g0326381 75.723 173 42 0 66 238 42 214 1.03e-99 303
Msa0076190 MtrunA17_Chr1g0210821 59.600 250 84 5 66 299 54 302 1.16e-99 308
Msa0076190 MtrunA17_Chr1g0163001 78.736 174 28 2 67 240 54 218 2.75e-99 306
Msa0076190 MtrunA17_Chr3g0141431 47.150 386 157 12 66 416 32 405 9.88e-97 295
Msa0076190 MtrunA17_Chr2g0324991 85.606 132 18 1 67 198 3 133 1.75e-83 252
Msa0076190 MtrunA17_Chr8g0375521 49.789 237 106 5 66 295 37 267 1.48e-72 233
Msa0076190 MtrunA17_Chr6g0479921 64.626 147 50 2 66 211 39 184 2.55e-68 224
Msa0076190 MtrunA17_Chr2g0320341 36.842 152 83 3 68 206 227 378 2.76e-25 106
Msa0076190 MtrunA17_Chr1g0200421 36.184 152 84 4 70 209 236 386 6.05e-24 103
Msa0076190 MtrunA17_Chr3g0123941 35.976 164 91 4 60 209 105 268 1.47e-23 100
Msa0076190 MtrunA17_Chr5g0422571 34.161 161 94 5 77 227 106 264 6.32e-22 95.1
Msa0076190 MtrunA17_Chr8g0382121 34.146 164 95 5 56 206 93 256 1.13e-21 94.7
Msa0076190 MtrunA17_Chr8g0352011 30.476 210 127 7 9 209 111 310 1.42e-21 95.1
Msa0076190 MtrunA17_Chr7g0258011 35.032 157 83 6 77 216 181 335 7.86e-21 93.2
Msa0076190 MtrunA17_Chr4g0053341 33.333 162 97 5 57 209 59 218 1.68e-20 89.7
Msa0076190 MtrunA17_Chr1g0198651 34.667 150 84 5 77 214 107 254 1.82e-20 91.3
Msa0076190 MtrunA17_Chr1g0173841 35.915 142 80 5 77 209 220 359 1.13e-19 90.1
Msa0076190 MtrunA17_Chr4g0026521 34.694 147 85 5 72 209 118 262 1.57e-19 88.6
Msa0076190 MtrunA17_Chr2g0328921 34.694 147 85 5 72 209 138 282 4.82e-19 87.4
Msa0076190 MtrunA17_Chr2g0321291 35.374 147 84 5 72 209 133 277 8.86e-19 86.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0076190 AT4G02670.2 51.892 370 100 10 64 416 63 371 2.18e-111 333
Msa0076190 AT4G02670.1 51.892 370 100 10 64 416 61 369 2.20e-111 333
Msa0076190 AT3G50700.1 46.085 447 162 12 2 402 1 414 1.50e-106 322
Msa0076190 AT1G55110.3 67.686 229 62 4 6 232 21 239 2.00e-104 317
Msa0076190 AT1G55110.1 67.686 229 62 4 6 232 21 239 2.00e-104 317
Msa0076190 AT1G55110.2 67.686 229 62 4 6 232 21 239 2.00e-104 317
Msa0076190 AT5G03150.1 83.041 171 26 1 66 233 63 233 2.66e-103 315
Msa0076190 AT3G13810.6 87.179 156 20 0 64 219 59 214 8.68e-101 309
Msa0076190 AT3G13810.4 87.179 156 20 0 64 219 78 233 1.07e-100 309
Msa0076190 AT3G13810.1 87.179 156 20 0 64 219 78 233 1.07e-100 309
Msa0076190 AT3G13810.5 87.179 156 20 0 64 219 73 228 1.24e-100 309
Msa0076190 AT3G45260.2 84.076 157 25 0 64 220 47 203 1.89e-100 306
Msa0076190 AT3G45260.1 84.076 157 25 0 64 220 47 203 1.89e-100 306
Msa0076190 AT5G66730.1 46.731 413 130 9 2 348 1 389 2.34e-100 308
Msa0076190 AT1G03840.1 84.277 159 24 1 64 222 49 206 8.71e-100 306
Msa0076190 AT3G13810.3 87.582 153 19 0 67 219 68 220 2.64e-99 305
Msa0076190 AT3G13810.2 87.582 153 19 0 67 219 82 234 3.28e-99 305
Msa0076190 AT1G03840.2 83.125 160 26 1 63 222 46 204 8.42e-99 304
Msa0076190 AT1G14580.1 82.692 156 26 1 64 219 61 215 2.88e-98 301
Msa0076190 AT1G14580.2 82.692 156 26 1 64 219 61 215 2.88e-98 301
Msa0076190 AT1G14580.3 82.692 156 26 1 64 219 75 229 4.01e-98 301
Msa0076190 AT2G02070.2 86.842 152 19 1 68 219 64 214 4.49e-98 305
Msa0076190 AT2G02070.1 86.842 152 19 1 68 219 64 214 4.49e-98 305
Msa0076190 AT2G02080.1 80.769 156 29 1 64 219 62 216 7.13e-97 300
Msa0076190 AT2G02080.4 80.769 156 29 1 64 219 62 216 7.13e-97 300
Msa0076190 AT2G02080.5 80.769 156 29 1 64 219 62 216 7.13e-97 300
Msa0076190 AT2G02080.3 80.769 156 29 1 64 219 62 216 7.13e-97 300
Msa0076190 AT5G60470.3 72.283 184 42 2 64 238 48 231 1.48e-96 296
Msa0076190 AT5G60470.2 72.283 184 42 2 64 238 52 235 1.61e-96 296
Msa0076190 AT5G44160.1 54.984 311 101 11 64 341 45 349 7.85e-96 295
Msa0076190 AT5G60470.1 69.681 188 48 2 60 238 39 226 9.81e-96 294
Msa0076190 AT5G44160.2 55.016 309 100 11 66 341 8 310 9.88e-96 293
Msa0076190 AT2G02080.6 80.714 140 26 1 80 219 1 139 4.67e-87 272
Msa0076190 AT2G02080.2 80.714 140 26 1 80 219 1 139 4.67e-87 272
Msa0076190 AT2G01940.1 65.541 148 50 1 66 212 54 201 5.98e-71 230
Msa0076190 AT1G68130.1 65.068 146 50 1 66 210 51 196 8.78e-70 226
Msa0076190 AT1G25250.1 64.189 148 51 2 65 210 19 166 2.36e-69 223
Msa0076190 AT1G25250.3 64.626 147 50 2 66 210 43 189 7.58e-69 223
Msa0076190 AT2G01940.3 64.430 149 51 2 66 212 54 202 2.22e-67 221
Msa0076190 AT2G01940.2 62.500 112 41 1 102 212 1 112 2.55e-46 163
Msa0076190 AT1G68130.2 61.818 110 41 1 102 210 1 110 1.02e-45 161
Msa0076190 AT1G25250.2 60.360 111 42 2 102 210 1 111 4.14e-44 156
Msa0076190 AT1G34370.3 35.948 153 85 4 70 209 19 171 1.30e-23 100
Msa0076190 AT1G34370.2 35.948 153 85 4 70 209 229 381 2.79e-23 102
Msa0076190 AT1G34370.1 35.948 153 85 4 70 209 229 381 2.79e-23 102
Msa0076190 AT5G22890.1 35.333 150 84 3 70 206 202 351 2.94e-23 100
Msa0076190 AT1G13290.1 33.987 153 88 6 77 218 93 243 6.74e-20 90.1
Msa0076190 AT1G08290.1 32.995 197 111 8 29 209 121 312 1.14e-19 89.7
Msa0076190 AT1G34790.1 36.000 150 85 5 69 209 129 276 2.60e-19 88.2
Msa0076190 AT3G20880.1 34.694 147 85 5 72 209 243 387 3.49e-19 89.4
Msa0076190 AT3G57670.1 34.694 147 85 5 72 209 204 348 7.95e-19 88.2
Msa0076190 AT1G51220.1 33.333 147 87 5 72 209 165 309 1.46e-18 86.7

Find 134 sgRNAs with CRISPR-Local

Find 271 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACCGACGGTTGCTGCTTTC+TGG 0.054131 1_2:+52092198 None:intergenic
AAATATACCCATGGTAATTT+TGG 0.155636 1_2:+52091825 None:intergenic
GAGAGGTTGGTGTGAAAATT+TGG 0.168178 1_2:+52092353 None:intergenic
AAAATTACCATGGGTATATT+TGG 0.189707 1_2:-52091823 Msa0076190:three_prime_UTR
ATTAGTGCAGGGAACATATT+TGG 0.233636 1_2:+52095614 None:intergenic
GATGATGTCATTATGCTCTT+AGG 0.239488 1_2:+52092296 None:intergenic
TGATGTGGCTTTGTTGGTTT+TGG 0.242334 1_2:+52092453 None:intergenic
AGGCTGTTGTGAGGAATTTA+TGG 0.247540 1_2:+52095523 None:intergenic
GTGTGAAAATTTGGAGATTC+AGG 0.253132 1_2:+52092362 None:intergenic
TGGAAACTTTGTTGTTGATT+TGG 0.272173 1_2:+52092473 None:intergenic
AGGAAGAGAGATTGGACTAA+TGG 0.292623 1_2:+52092500 None:intergenic
GTGTATCCAAGTCTCATTCT+TGG 0.308012 1_2:-52095798 Msa0076190:five_prime_UTR
GGAAACTTTGTTGTTGATTT+GGG 0.314994 1_2:+52092474 None:intergenic
TTGTGGTGGTGATGGCTAAT+TGG 0.316995 1_2:+52092531 None:intergenic
TTCTGAGAAAGAAGTGGAAT+TGG 0.320642 1_2:+52095589 None:intergenic
CCCAGGTGATGTGGCTTTGT+TGG 0.325238 1_2:+52092447 None:intergenic
TTGGGAAGAGGAAGAGAGAT+TGG 0.331874 1_2:+52092492 None:intergenic
CAGCTCAGCATTGACCAGTT+TGG 0.334289 1_2:-52092140 Msa0076190:CDS
GAGACCGTCTTCGTTCTTTC+CGG 0.338812 1_2:+52092058 None:intergenic
GACTAATGGGTTTGTGTTTG+TGG 0.349306 1_2:+52092514 None:intergenic
CAGTCACAACAAGCAGGTTT+TGG 0.351112 1_2:-52091898 Msa0076190:three_prime_UTR
ATAGTTAATGAAATTGAAAC+AGG 0.351681 1_2:+52091706 None:intergenic
TGTGGTGGAGAGTATTATTA+AGG 0.363128 1_2:+52092393 None:intergenic
AGGGCTCTTGGAGATCTTAC+AGG 0.369272 1_2:-52094918 Msa0076190:CDS
CTAGGGTTAGGGTTTGGTTG+AGG 0.381467 1_2:+52092419 None:intergenic
GGAAGAGAGATTGGACTAAT+GGG 0.383729 1_2:+52092501 None:intergenic
ATGATGTCATTATGCTCTTA+GGG 0.385655 1_2:+52092297 None:intergenic
TTATTAAGGTTGCTAGGGTT+AGG 0.389295 1_2:+52092407 None:intergenic
CTTACCAACGGCGGAGGAAA+TGG 0.400342 1_2:-52092017 Msa0076190:CDS
TCTATGCTGTTCATTCTGAT+TGG 0.408547 1_2:-52094830 Msa0076190:CDS
TATTAGTTACCTGGGTTACC+AGG 0.411020 1_2:+52095474 None:intergenic
TTTGATGAGGTTGGTGTTGG+TGG 0.413230 1_2:+52091941 None:intergenic
ACCAACAAAGCCACATCACC+TGG 0.418644 1_2:-52092448 Msa0076190:CDS
GGGTTAGGGTTTGGTTGAGG+TGG 0.424046 1_2:+52092422 None:intergenic
TATTAAGGTTGCTAGGGTTA+GGG 0.426783 1_2:+52092408 None:intergenic
CATAACCCTTCAAGGGCTCT+TGG 0.427551 1_2:-52094930 Msa0076190:CDS
CATTTCCTCCGCCGTTGGTA+AGG 0.428942 1_2:+52092018 None:intergenic
GGTTAGGGTTTGGTTGAGGT+GGG 0.430124 1_2:+52092423 None:intergenic
AAAGCTATCACTTCAGCATC+AGG 0.433390 1_2:+52095140 None:intergenic
GGTCTCACGAGGGACTTTCT+TGG 0.435384 1_2:-52092041 Msa0076190:CDS
TAGAGGAGGAGAAGAGAGGT+TGG 0.446268 1_2:+52092340 None:intergenic
TTCCTTTGCTTCAACTTCCA+TGG 0.449693 1_2:+52095011 None:intergenic
AGAGTATTATTAAGGTTGCT+AGG 0.450934 1_2:+52092401 None:intergenic
TTTGTTGTTGATTTGGGAAG+AGG 0.451023 1_2:+52092480 None:intergenic
GTTTGGTTGAGGTGGGTCCC+AGG 0.454878 1_2:+52092430 None:intergenic
GTTTGTGTTTGTGGTGGTGA+TGG 0.463157 1_2:+52092523 None:intergenic
AGGTTGCTAGGGTTAGGGTT+TGG 0.463790 1_2:+52092413 None:intergenic
GGGTTTGTGTGACGAAGAAA+TGG 0.465238 1_2:+52092317 None:intergenic
GTGTTCATCATAACCCTTCA+AGG 0.465914 1_2:-52094938 Msa0076190:CDS
TTTGCTTCAACTTCCATGGT+AGG 0.474534 1_2:+52095015 None:intergenic
GCTGAGTCACTGATCCAAAC+TGG 0.482248 1_2:+52092126 None:intergenic
AAGGATATGCTAACATTCAC+AGG 0.488242 1_2:-52091975 Msa0076190:CDS
GAGATTCAGGCTTGATGTTG+TGG 0.492741 1_2:+52092375 None:intergenic
AGGAAATGGTGGTGAGTCCT+TGG 0.504475 1_2:-52092003 Msa0076190:CDS
GGTATATAAGATGAATTGAA+TGG 0.505833 1_2:+52091800 None:intergenic
TTTATATTCTCTAGTACCAC+AGG 0.507908 1_2:+52094791 None:intergenic
AAACAGTACTCCATGACAAA+AGG 0.510212 1_2:+52091779 None:intergenic
GAGTATTATTAAGGTTGCTA+GGG 0.512977 1_2:+52092402 None:intergenic
TGTTTCTTCTGAGAAAGAAG+TGG 0.516927 1_2:+52095583 None:intergenic
GTGGAATTGGACATTAGTGC+AGG 0.522525 1_2:+52095602 None:intergenic
GTGATGTTGGCTGCCTGTGA+TGG 0.522742 1_2:+52092169 None:intergenic
AACATGAGAGGCTGCCTCAC+CGG 0.528047 1_2:-52092077 Msa0076190:CDS
GTGTGTGAGATCTGCAACAA+GGG 0.528425 1_2:-52095083 Msa0076190:CDS
TGATGAACACATGAAGGCTC+TGG 0.528458 1_2:+52094951 None:intergenic
GAGGTGGGTCCCAGGTGATG+TGG 0.529471 1_2:+52092438 None:intergenic
GTCGGTGCCACCGCCATCAC+AGG 0.531410 1_2:-52092182 Msa0076190:CDS
CTTGGCCTTACCAACGGCGG+AGG 0.533245 1_2:-52092023 Msa0076190:CDS
AACAACTGTTCCTGAGTCGT+GGG 0.538679 1_2:-52091863 Msa0076190:three_prime_UTR
AATTTATGGTTGAAACTAAG+TGG 0.539157 1_2:+52095537 None:intergenic
ACCACCATTTCCTCCGCCGT+TGG 0.540479 1_2:+52092013 None:intergenic
GTCCTCTCCTATGTAGCTGT+AGG 0.540553 1_2:+52095042 None:intergenic
TGAGAGCCAAGAATGAGACT+TGG 0.541869 1_2:+52095792 None:intergenic
ATGGTAGAGGAGGAGAAGAG+AGG 0.543866 1_2:+52092336 None:intergenic
TGACGAAGAAATGGTAGAGG+AGG 0.549887 1_2:+52092326 None:intergenic
GACTTTCTTGGCCTTACCAA+CGG 0.550956 1_2:-52092029 Msa0076190:CDS
CAACAACTGTTCCTGAGTCG+TGG 0.554359 1_2:-52091864 Msa0076190:three_prime_UTR
ATCAAAACCTACAGCTACAT+AGG 0.556033 1_2:-52095049 Msa0076190:CDS
AGATCTCCAAGAGCCCTTGA+AGG 0.557730 1_2:+52094924 None:intergenic
TGAGCTGAGAGGTGTGATGT+TGG 0.562319 1_2:+52092156 None:intergenic
TGCTGTGTGCTGACGTGGAA+GGG 0.562720 1_2:+52092272 None:intergenic
TTGGCTGCCTGTGATGGCGG+TGG 0.566128 1_2:+52092175 None:intergenic
TAATGGGTTTGTGTTTGTGG+TGG 0.568535 1_2:+52092517 None:intergenic
TAGCATATCCTTTACATCCA+AGG 0.571843 1_2:+52091986 None:intergenic
ATACCTTCTTGTCATGGACA+TGG 0.573008 1_2:-52091646 Msa0076190:three_prime_UTR
AGAAGCCTCCCTGGTAACCC+AGG 0.574987 1_2:-52095483 Msa0076190:intron
AAGGTTGCTGTGTGCTGACG+TGG 0.575946 1_2:+52092267 None:intergenic
TGTGATGGCGGTGGCACCGA+CGG 0.576064 1_2:+52092184 None:intergenic
AGAGAATATAAATGTGATTG+TGG 0.579986 1_2:-52094780 Msa0076190:CDS
TACCATGGAAGTTGAAGCAA+AGG 0.582854 1_2:-52095013 Msa0076190:CDS
TGCTGAAAGGTGTGGTGACA+TGG 0.583375 1_2:+52092232 None:intergenic
AGAACGAAGACGGTCTCACG+AGG 0.584329 1_2:-52092052 Msa0076190:CDS
GTGTGGTGACATGGCAGCAG+TGG 0.584847 1_2:+52092241 None:intergenic
TTGCTGTGTGCTGACGTGGA+AGG 0.586433 1_2:+52092271 None:intergenic
TGGTGAGTCCTTGGATGTAA+AGG 0.590221 1_2:-52091994 Msa0076190:CDS
GTTGTTAATGTAGTGATCAA+CGG 0.595265 1_2:+52092097 None:intergenic
GGGTTATGATGAACACATGA+AGG 0.597360 1_2:+52094945 None:intergenic
GATCTCCAAGAGCCCTTGAA+GGG 0.598968 1_2:+52094925 None:intergenic
ACTCCATGTCCATGACAAGA+AGG 0.599738 1_2:+52091643 None:intergenic
GTGTGACGAAGAAATGGTAG+AGG 0.601234 1_2:+52092323 None:intergenic
GACATGGCAGCAGTGGAAGA+AGG 0.611386 1_2:+52092248 None:intergenic
AAGTCACAGTCACAACAAGC+AGG 0.612011 1_2:-52091904 Msa0076190:three_prime_UTR
ATTAGTTACCTGGGTTACCA+GGG 0.616252 1_2:+52095475 None:intergenic
GGAGAGGACATAACCTACCA+TGG 0.621627 1_2:-52095028 Msa0076190:CDS
CGTCTTCGTTCTTTCCGGTG+AGG 0.625760 1_2:+52092063 None:intergenic
TGTTCATCATAACCCTTCAA+GGG 0.626799 1_2:-52094937 Msa0076190:CDS
ATGTTGGCTGCCTGTGATGG+CGG 0.628490 1_2:+52092172 None:intergenic
CACTACAAGTTGGAGAGGAG+AGG 0.629079 1_2:+52095657 None:intergenic
AACAGCACTACAAGTTGGAG+AGG 0.629655 1_2:+52095652 None:intergenic
TGAATGGCCAAATATACCCA+TGG 0.629992 1_2:+52091816 None:intergenic
CTCCAGAAAGCAGCAACCGT+CGG 0.630036 1_2:-52092200 Msa0076190:CDS
ATTCAGGCTTGATGTTGTGG+TGG 0.630169 1_2:+52092378 None:intergenic
CACTACATTAACAACATGAG+AGG 0.631695 1_2:-52092089 Msa0076190:CDS
ACCAACGGCGGAGGAAATGG+TGG 0.634537 1_2:-52092014 Msa0076190:CDS
TTAAGAGACCAAAATTACCA+TGG 0.636860 1_2:-52091833 Msa0076190:three_prime_UTR
TAAGAGACCAAAATTACCAT+GGG 0.640305 1_2:-52091832 Msa0076190:three_prime_UTR
GGAGAAGTGCAGTTGCTGAA+AGG 0.641527 1_2:+52092219 None:intergenic
AAACATTATAGTAGAAAACA+TGG 0.647572 1_2:-52094888 Msa0076190:CDS
AGTTACCTGGGTTACCAGGG+AGG 0.652361 1_2:+52095478 None:intergenic
ACAACTGTTCCTGAGTCGTG+GGG 0.654552 1_2:-52091862 Msa0076190:three_prime_UTR
AGGATATGCTAACATTCACA+GGG 0.658162 1_2:-52091974 Msa0076190:CDS
CCAACAAAGCCACATCACCT+GGG 0.660119 1_2:-52092447 Msa0076190:CDS
TGGAATTGGACATTAGTGCA+GGG 0.664460 1_2:+52095603 None:intergenic
AACCTACAGCTACATAGGAG+AGG 0.665795 1_2:-52095044 Msa0076190:CDS
CTGGTCAATGCTGAGCTGAG+AGG 0.669761 1_2:+52092145 None:intergenic
TGTGTGTGAGATCTGCAACA+AGG 0.672147 1_2:-52095084 Msa0076190:CDS
GAACGAAGACGGTCTCACGA+GGG 0.672722 1_2:-52092051 Msa0076190:CDS
CTCACCGGAAAGAACGAAGA+CGG 0.675316 1_2:-52092062 Msa0076190:CDS
CAACTGTTCCTGAGTCGTGG+GGG 0.675581 1_2:-52091861 Msa0076190:three_prime_UTR
GAAGCAAAGGAACAACAAAG+AGG 0.688495 1_2:-52095000 Msa0076190:CDS
TTTCTTGGCCTTACCAACGG+CGG 0.703626 1_2:-52092026 Msa0076190:CDS
AAAGCTCACTCTAAAACCTG+TGG 0.713942 1_2:-52094807 Msa0076190:CDS
AGTGCAGTTGCTGAAAGGTG+TGG 0.715797 1_2:+52092224 None:intergenic
TAGTTAATGAAATTGAAACA+GGG 0.721599 1_2:+52091707 None:intergenic
GGATATGCTAACATTCACAG+GGG 0.791734 1_2:-52091973 Msa0076190:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATATAATATTATGTTGA+AGG + chr1_2:52093957-52093976 None:intergenic 10.0%
!! TTAAAAATTCATAAATGAAT+TGG - chr1_2:52094302-52094321 Msa0076190:intron 10.0%
!! TAAAAATTCATAAATGAATT+GGG - chr1_2:52094303-52094322 Msa0076190:intron 10.0%
!!! TTTTTGTTTGATTCAAAATA+TGG + chr1_2:52091711-52091730 None:intergenic 15.0%
!! ATTTATAACATGTTAAATTG+TGG - chr1_2:52092009-52092028 Msa0076190:CDS 15.0%
!! TGGATTAATTTAATAAATCA+TGG + chr1_2:52092775-52092794 None:intergenic 15.0%
!! AATAGAAACATAAGAAAAAA+TGG + chr1_2:52092795-52092814 None:intergenic 15.0%
!!! CAAATCATAATTTTAAATTG+CGG - chr1_2:52092841-52092860 Msa0076190:intron 15.0%
!! AAAAGAATAATTATGAAAAC+AGG + chr1_2:52093127-52093146 None:intergenic 15.0%
!!! TCATTTATGAATTTTTAACA+TGG + chr1_2:52094300-52094319 None:intergenic 15.0%
!! TATTCTAAATGTAATTACTA+GGG + chr1_2:52094485-52094504 None:intergenic 15.0%
!! TTATTCTAAATGTAATTACT+AGG + chr1_2:52094486-52094505 None:intergenic 15.0%
!!! AACAATAAATAAACCTTTTT+AGG - chr1_2:52094512-52094531 Msa0076190:intron 15.0%
!!! ACAATAAATAAACCTTTTTA+GGG - chr1_2:52094513-52094532 Msa0076190:intron 15.0%
!! TAACTAATTATTAGTTACCT+GGG + chr1_2:52091978-52091997 None:intergenic 20.0%
!! TTAACTAATTATTAGTTACC+TGG + chr1_2:52091979-52091998 None:intergenic 20.0%
!!! TTACATGTGATTTTAAATTG+CGG + chr1_2:52092118-52092137 None:intergenic 20.0%
!! TATACTAAACAATTGAACTA+AGG + chr1_2:52092234-52092253 None:intergenic 20.0%
!! AAACATTATAGTAGAAAACA+TGG - chr1_2:52092553-52092572 Msa0076190:CDS 20.0%
!!! TCTCTAAAACATTTATATTG+CGG + chr1_2:52092885-52092904 None:intergenic 20.0%
!! ATTTAATCTCTACCAAATTA+TGG + chr1_2:52093035-52093054 None:intergenic 20.0%
!! TCTTATAGTAATTATGATGA+TGG + chr1_2:52093918-52093937 None:intergenic 20.0%
!!! AATGAATTTGATTTTGAGAA+TGG + chr1_2:52094229-52094248 None:intergenic 20.0%
!! TAACTAAATAAATAACACCA+TGG - chr1_2:52094720-52094739 Msa0076190:intron 20.0%
!! TAGTTAATGAAATTGAAACA+GGG + chr1_2:52095737-52095756 None:intergenic 20.0%
!! ATAGTTAATGAAATTGAAAC+AGG + chr1_2:52095738-52095757 None:intergenic 20.0%
! AATTTATGGTTGAAACTAAG+TGG + chr1_2:52091907-52091926 None:intergenic 25.0%
!! CCATAATATAAAGGATTTTG+AGG + chr1_2:52092072-52092091 None:intergenic 25.0%
! CCTCAAAATCCTTTATATTA+TGG - chr1_2:52092069-52092088 Msa0076190:CDS 25.0%
!! TTTGTTGCTAATAGTGTTTT+TGG + chr1_2:52092331-52092350 None:intergenic 25.0%
! AGAGAATATAAATGTGATTG+TGG - chr1_2:52092661-52092680 Msa0076190:intron 25.0%
! CTTTCATGAAACAATTTCAA+GGG + chr1_2:52093194-52093213 None:intergenic 25.0%
!! TGTTTTCTGAATCCTAAAAA+AGG - chr1_2:52093285-52093304 Msa0076190:intron 25.0%
! CAGTAGTAGATAAAAACAAA+AGG + chr1_2:52093360-52093379 None:intergenic 25.0%
!! TTTCCAATTTTAAATGTGTC+AGG - chr1_2:52093511-52093530 Msa0076190:intron 25.0%
!! TTCCAATTTTAAATGTGTCA+GGG - chr1_2:52093512-52093531 Msa0076190:intron 25.0%
! TATACACTCTTATGTTGATA+TGG - chr1_2:52093576-52093595 Msa0076190:intron 25.0%
! AAGTTCAGAGAAAAATACTA+TGG + chr1_2:52093737-52093756 None:intergenic 25.0%
!!! TATAGTAATTATGATGATGG+TGG + chr1_2:52093915-52093934 None:intergenic 25.0%
! ATATTATGTTGAAGGATTGT+TGG + chr1_2:52093949-52093968 None:intergenic 25.0%
! AACATAATTTATGTCCCAAT+TGG - chr1_2:52094051-52094070 Msa0076190:intron 25.0%
! TAGATGACTCAAATTATGAT+TGG - chr1_2:52094406-52094425 Msa0076190:intron 25.0%
! AATTATGATTGGATAAATGC+AGG - chr1_2:52094417-52094436 Msa0076190:intron 25.0%
! ATGCAGGATAATTTCAATTT+AGG - chr1_2:52094433-52094452 Msa0076190:intron 25.0%
!!! TACTAGTACATTTTAGAGAA+GGG - chr1_2:52094542-52094561 Msa0076190:intron 25.0%
!!! CTAGACTTTTTAGGTTAATT+TGG - chr1_2:52094572-52094591 Msa0076190:intron 25.0%
!! TTTAGGTTAATTTGGTTTAG+AGG - chr1_2:52094580-52094599 Msa0076190:intron 25.0%
! ATAAAAAAGAGCCTCTAATA+TGG + chr1_2:52094701-52094720 None:intergenic 25.0%
!! AAATATACCCATGGTAATTT+TGG + chr1_2:52095619-52095638 None:intergenic 25.0%
! AAAATTACCATGGGTATATT+TGG - chr1_2:52095618-52095637 Msa0076190:exon 25.0%
! GGTATATAAGATGAATTGAA+TGG + chr1_2:52095644-52095663 None:intergenic 25.0%
!! ATCTTATATACCTTTTGTCA+TGG - chr1_2:52095652-52095671 Msa0076190:five_prime_UTR 25.0%
!! TTTTATATACCTTCTTGTCA+TGG - chr1_2:52095789-52095808 Msa0076190:five_prime_UTR 25.0%
AAAGAGAAGAGAAAAAAGCT+AGG + chr1_2:52091761-52091780 None:intergenic 30.0%
!!! TCTTTTTTCTTGGACTTTTG+AGG + chr1_2:52091941-52091960 None:intergenic 30.0%
GAAAACATGGTGAGAAAAAA+TGG - chr1_2:52092566-52092585 Msa0076190:CDS 30.0%
TTTATATTCTCTAGTACCAC+AGG + chr1_2:52092653-52092672 None:intergenic 30.0%
AGTACTATACCTGGAAAAAA+GGG + chr1_2:52092689-52092708 None:intergenic 30.0%
TAGTACTATACCTGGAAAAA+AGG + chr1_2:52092690-52092709 None:intergenic 30.0%
!!! TGTTTTAGAGATTTGCGTAA+CGG - chr1_2:52092894-52092913 Msa0076190:intron 30.0%
AACAATAAGGCAAATGCAAT+CGG + chr1_2:52092929-52092948 None:intergenic 30.0%
TTGCAGCACAATAAACAATA+AGG + chr1_2:52092942-52092961 None:intergenic 30.0%
!!! ATAGTTTTAGGTTACGATTG+CGG + chr1_2:52092997-52093016 None:intergenic 30.0%
AATTATGGTAAATACACCGT+AGG + chr1_2:52093020-52093039 None:intergenic 30.0%
ACGGTGTATTTACCATAATT+TGG - chr1_2:52093020-52093039 Msa0076190:intron 30.0%
CCTTTCATGAAACAATTTCA+AGG + chr1_2:52093195-52093214 None:intergenic 30.0%
CCTTGAAATTGTTTCATGAA+AGG - chr1_2:52093192-52093211 Msa0076190:intron 30.0%
ATTCTAGTCTCTTTAGCAAT+TGG + chr1_2:52093255-52093274 None:intergenic 30.0%
!!! ACATTCATTTGGCCTTTTTT+AGG + chr1_2:52093300-52093319 None:intergenic 30.0%
! AGATAAAAACAAAAGGTGTG+TGG + chr1_2:52093353-52093372 None:intergenic 30.0%
!! CAGATTTGTTGCAGATTTAT+CGG + chr1_2:52093778-52093797 None:intergenic 30.0%
CTTCTATAACTTCATTACAG+TGG - chr1_2:52093815-52093834 Msa0076190:intron 30.0%
ATAACTTCATTACAGTGGAT+TGG - chr1_2:52093820-52093839 Msa0076190:intron 30.0%
! TTTTGCATGCATAAAGCAAA+AGG - chr1_2:52093984-52094003 Msa0076190:intron 30.0%
GGGACATAAATTATGTTACA+GGG + chr1_2:52094048-52094067 None:intergenic 30.0%
TGGGACATAAATTATGTTAC+AGG + chr1_2:52094049-52094068 None:intergenic 30.0%
!! ATTGCTGTGTTTTGAACAAT+CGG - chr1_2:52094329-52094348 Msa0076190:intron 30.0%
!! CTACTAGTACATTTTAGAGA+AGG - chr1_2:52094541-52094560 Msa0076190:intron 30.0%
!! TCACTTGTGTTTTTATTGAG+GGG + chr1_2:52094643-52094662 None:intergenic 30.0%
!! GTCACTTGTGTTTTTATTGA+GGG + chr1_2:52094644-52094663 None:intergenic 30.0%
!! TGTCACTTGTGTTTTTATTG+AGG + chr1_2:52094645-52094664 None:intergenic 30.0%
TAAAAACACAAGTGACATGT+TGG - chr1_2:52094648-52094667 Msa0076190:intron 30.0%
! CTAATATGGTCTTGATTCAA+TGG + chr1_2:52094687-52094706 None:intergenic 30.0%
TTGAATCAAGACCATATTAG+AGG - chr1_2:52094687-52094706 Msa0076190:intron 30.0%
TTGCATCATACTTATAACCA+TGG + chr1_2:52094740-52094759 None:intergenic 30.0%
! TTTTATTGTGTGAAAACTGC+AGG - chr1_2:52094816-52094835 Msa0076190:CDS 30.0%
!! GGAAACTTTGTTGTTGATTT+GGG + chr1_2:52094970-52094989 None:intergenic 30.0%
!! TGGAAACTTTGTTGTTGATT+TGG + chr1_2:52094971-52094990 None:intergenic 30.0%
GAGTATTATTAAGGTTGCTA+GGG + chr1_2:52095042-52095061 None:intergenic 30.0%
! AGAGTATTATTAAGGTTGCT+AGG + chr1_2:52095043-52095062 None:intergenic 30.0%
ATGATGTCATTATGCTCTTA+GGG + chr1_2:52095147-52095166 None:intergenic 30.0%
GTTGTTAATGTAGTGATCAA+CGG + chr1_2:52095347-52095366 None:intergenic 30.0%
TTAAGAGACCAAAATTACCA+TGG - chr1_2:52095608-52095627 Msa0076190:CDS 30.0%
TAAGAGACCAAAATTACCAT+GGG - chr1_2:52095609-52095628 Msa0076190:CDS 30.0%
AGAAGAGAAAAAAGCTAGGT+AGG + chr1_2:52091757-52091776 None:intergenic 35.0%
AGAAAAACAGCACTACAAGT+TGG + chr1_2:52091797-52091816 None:intergenic 35.0%
ATTAGTGCAGGGAACATATT+TGG + chr1_2:52091830-52091849 None:intergenic 35.0%
! TTCTGAGAAAGAAGTGGAAT+TGG + chr1_2:52091855-52091874 None:intergenic 35.0%
! TGTTTCTTCTGAGAAAGAAG+TGG + chr1_2:52091861-52091880 None:intergenic 35.0%
TAGTTGCGGCCATAATATAA+AGG + chr1_2:52092081-52092100 None:intergenic 35.0%
TCTGCAACTGTAATTAGTTG+CGG + chr1_2:52092095-52092114 None:intergenic 35.0%
ATCAAAACCTACAGCTACAT+AGG - chr1_2:52092392-52092411 Msa0076190:CDS 35.0%
TGTTCATCATAACCCTTCAA+GGG - chr1_2:52092504-52092523 Msa0076190:CDS 35.0%
TCTATGCTGTTCATTCTGAT+TGG - chr1_2:52092611-52092630 Msa0076190:intron 35.0%
AGCAGTAATAGTACTATACC+TGG + chr1_2:52092698-52092717 None:intergenic 35.0%
TTTGCAACACAACAACAACT+AGG - chr1_2:52092970-52092989 Msa0076190:intron 35.0%
CGTAACCTAAAACTATCCTA+CGG - chr1_2:52093001-52093020 Msa0076190:intron 35.0%
! ATACACCGTAGGATAGTTTT+AGG + chr1_2:52093009-52093028 None:intergenic 35.0%
TGAAAGGTTGCATGAAATTG+TGG - chr1_2:52093208-52093227 Msa0076190:intron 35.0%
AAAAAGGCCAAATGAATGTG+CGG - chr1_2:52093301-52093320 Msa0076190:intron 35.0%
! CACCCTGACACATTTAAAAT+TGG + chr1_2:52093517-52093536 None:intergenic 35.0%
ACTCTTATGTTGATATGGAG+TGG - chr1_2:52093581-52093600 Msa0076190:intron 35.0%
CTCTTATGTTGATATGGAGT+GGG - chr1_2:52093582-52093601 Msa0076190:intron 35.0%
! TGCAGTCTCTAAGAAAATGA+TGG - chr1_2:52093605-52093624 Msa0076190:intron 35.0%
!! TTACAGTGGATTGGATTACA+TGG - chr1_2:52093829-52093848 Msa0076190:intron 35.0%
TATGCATGATGCAATTGATG+TGG + chr1_2:52094014-52094033 None:intergenic 35.0%
AAATCATGCATGGGATAAAG+GGG + chr1_2:52094120-52094139 None:intergenic 35.0%
GAAATCATGCATGGGATAAA+GGG + chr1_2:52094121-52094140 None:intergenic 35.0%
AGAACTTCACAAGTCTTCTT+TGG - chr1_2:52094174-52094193 Msa0076190:intron 35.0%
! TTTTGAACAATCGGTCACAT+TGG - chr1_2:52094338-52094357 Msa0076190:intron 35.0%
! GGTTGAAAGCTAGACTTTTT+AGG - chr1_2:52094563-52094582 Msa0076190:intron 35.0%
!! TTTGTTGTTGATTTGGGAAG+AGG + chr1_2:52094964-52094983 None:intergenic 35.0%
TATTAAGGTTGCTAGGGTTA+GGG + chr1_2:52095036-52095055 None:intergenic 35.0%
TTATTAAGGTTGCTAGGGTT+AGG + chr1_2:52095037-52095056 None:intergenic 35.0%
!! TGTGGTGGAGAGTATTATTA+AGG + chr1_2:52095051-52095070 None:intergenic 35.0%
GTGTGAAAATTTGGAGATTC+AGG + chr1_2:52095082-52095101 None:intergenic 35.0%
GATGATGTCATTATGCTCTT+AGG + chr1_2:52095148-52095167 None:intergenic 35.0%
CACTACATTAACAACATGAG+AGG - chr1_2:52095352-52095371 Msa0076190:intron 35.0%
TAGCATATCCTTTACATCCA+AGG + chr1_2:52095458-52095477 None:intergenic 35.0%
AAGGATATGCTAACATTCAC+AGG - chr1_2:52095466-52095485 Msa0076190:intron 35.0%
AGGATATGCTAACATTCACA+GGG - chr1_2:52095467-52095486 Msa0076190:intron 35.0%
!!! TCATCATGTTTTGATGAGGT+TGG + chr1_2:52095512-52095531 None:intergenic 35.0%
!!! AGCATCATCATGTTTTGATG+AGG + chr1_2:52095516-52095535 None:intergenic 35.0%
!!! AAGCAGGTTTTGGTTTTCTT+GGG - chr1_2:52095553-52095572 Msa0076190:CDS 35.0%
AAACAGTACTCCATGACAAA+AGG + chr1_2:52095665-52095684 None:intergenic 35.0%
GTGTATCCAAGTCTCATTCT+TGG - chr1_2:52091643-52091662 Msa0076190:three_prime_UTR 40.0%
GCTCTCAAAAAGTAGCTATC+AGG - chr1_2:52091665-52091684 Msa0076190:three_prime_UTR 40.0%
TGGAATTGGACATTAGTGCA+GGG + chr1_2:52091841-52091860 None:intergenic 40.0%
AGGCTGTTGTGAGGAATTTA+TGG + chr1_2:52091921-52091940 None:intergenic 40.0%
ATTAGTTACCTGGGTTACCA+GGG + chr1_2:52091969-52091988 None:intergenic 40.0%
TATTAGTTACCTGGGTTACC+AGG + chr1_2:52091970-52091989 None:intergenic 40.0%
TTAAATTGTGGTCGCAGTTG+CGG - chr1_2:52092021-52092040 Msa0076190:CDS 40.0%
AAAGCTATCACTTCAGCATC+AGG + chr1_2:52092304-52092323 None:intergenic 40.0%
TTTGCTTCAACTTCCATGGT+AGG + chr1_2:52092429-52092448 None:intergenic 40.0%
TACCATGGAAGTTGAAGCAA+AGG - chr1_2:52092428-52092447 Msa0076190:CDS 40.0%
TTCCTTTGCTTCAACTTCCA+TGG + chr1_2:52092433-52092452 None:intergenic 40.0%
GAAGCAAAGGAACAACAAAG+AGG - chr1_2:52092441-52092460 Msa0076190:CDS 40.0%
GGGTTATGATGAACACATGA+AGG + chr1_2:52092499-52092518 None:intergenic 40.0%
GTGTTCATCATAACCCTTCA+AGG - chr1_2:52092503-52092522 Msa0076190:CDS 40.0%
!! AAAGCTCACTCTAAAACCTG+TGG - chr1_2:52092634-52092653 Msa0076190:intron 40.0%
!!! ATTGTGGTACCCTTTTTTCC+AGG - chr1_2:52092677-52092696 Msa0076190:intron 40.0%
TAGAGATTTGCGTAACGGTT+TGG - chr1_2:52092899-52092918 Msa0076190:intron 40.0%
TTAACTGCCGCACATTCATT+TGG + chr1_2:52093311-52093330 None:intergenic 40.0%
!! ATGATGATGGTGGAAGTCTT+GGG + chr1_2:52093905-52093924 None:intergenic 40.0%
!! TATGATGATGGTGGAAGTCT+TGG + chr1_2:52093906-52093925 None:intergenic 40.0%
! TCAATGGGTTTGGACCAATT+GGG + chr1_2:52094068-52094087 None:intergenic 40.0%
! GATTAACGTGTCAATGGGTT+TGG + chr1_2:52094078-52094097 None:intergenic 40.0%
! ACACGGATTAACGTGTCAAT+GGG + chr1_2:52094083-52094102 None:intergenic 40.0%
! TACACGGATTAACGTGTCAA+TGG + chr1_2:52094084-52094103 None:intergenic 40.0%
AATCATGCATGGGATAAAGG+GGG + chr1_2:52094119-52094138 None:intergenic 40.0%
GGAAATCATGCATGGGATAA+AGG + chr1_2:52094122-52094141 None:intergenic 40.0%
AGGTAAGGGAAATCATGCAT+GGG + chr1_2:52094129-52094148 None:intergenic 40.0%
AAGGTAAGGGAAATCATGCA+TGG + chr1_2:52094130-52094149 None:intergenic 40.0%
! TTCCCTTACCTTTTTGCCAA+TGG - chr1_2:52094138-52094157 Msa0076190:intron 40.0%
! TCCCTTACCTTTTTGCCAAT+GGG - chr1_2:52094139-52094158 Msa0076190:intron 40.0%
! CTAGGGATGAACGAGTTTTA+AGG + chr1_2:52094468-52094487 None:intergenic 40.0%
!! CTAGTAGAAGCACCCTAAAA+AGG + chr1_2:52094528-52094547 None:intergenic 40.0%
ATTGTGTGAAAACTGCAGGA+AGG - chr1_2:52094820-52094839 Msa0076190:CDS 40.0%
!! TAATGGGTTTGTGTTTGTGG+TGG + chr1_2:52094927-52094946 None:intergenic 40.0%
!! GACTAATGGGTTTGTGTTTG+TGG + chr1_2:52094930-52094949 None:intergenic 40.0%
GGAAGAGAGATTGGACTAAT+GGG + chr1_2:52094943-52094962 None:intergenic 40.0%
AGGAAGAGAGATTGGACTAA+TGG + chr1_2:52094944-52094963 None:intergenic 40.0%
!!! TGATGTGGCTTTGTTGGTTT+TGG + chr1_2:52094991-52095010 None:intergenic 40.0%
!! GAGAGGTTGGTGTGAAAATT+TGG + chr1_2:52095091-52095110 None:intergenic 40.0%
GGATATGCTAACATTCACAG+GGG - chr1_2:52095468-52095487 Msa0076190:intron 40.0%
!!! TGTTTTGATGAGGTTGGTGT+TGG + chr1_2:52095506-52095525 None:intergenic 40.0%
!!! CAAGCAGGTTTTGGTTTTCT+TGG - chr1_2:52095552-52095571 Msa0076190:CDS 40.0%
TGAATGGCCAAATATACCCA+TGG + chr1_2:52095628-52095647 None:intergenic 40.0%
ATACCTTCTTGTCATGGACA+TGG - chr1_2:52095795-52095814 Msa0076190:five_prime_UTR 40.0%
TGAGAGCCAAGAATGAGACT+TGG + chr1_2:52091652-52091671 None:intergenic 45.0%
! AACAGCACTACAAGTTGGAG+AGG + chr1_2:52091792-52091811 None:intergenic 45.0%
GTGGAATTGGACATTAGTGC+AGG + chr1_2:52091842-52091861 None:intergenic 45.0%
!!! CAGGGAGGCTTCTTTTTTCT+TGG + chr1_2:52091951-52091970 None:intergenic 45.0%
CAAGAAAAAAGAAGCCTCCC+TGG - chr1_2:52091949-52091968 Msa0076190:exon 45.0%
TGTGTGTGAGATCTGCAACA+AGG - chr1_2:52092357-52092376 Msa0076190:CDS 45.0%
GTGTGTGAGATCTGCAACAA+GGG - chr1_2:52092358-52092377 Msa0076190:CDS 45.0%
AACCTACAGCTACATAGGAG+AGG - chr1_2:52092397-52092416 Msa0076190:CDS 45.0%
TGATGAACACATGAAGGCTC+TGG + chr1_2:52092493-52092512 None:intergenic 45.0%
! GTCAATGGGTTTGGACCAAT+TGG + chr1_2:52094069-52094088 None:intergenic 45.0%
CCCCATTGGCAAAAAGGTAA+GGG + chr1_2:52094143-52094162 None:intergenic 45.0%
! CCCTTACCTTTTTGCCAATG+GGG - chr1_2:52094140-52094159 Msa0076190:intron 45.0%
AATGTGCCCCATTGGCAAAA+AGG + chr1_2:52094149-52094168 None:intergenic 45.0%
!! TTGTGGTGGTGATGGCTAAT+TGG + chr1_2:52094913-52094932 None:intergenic 45.0%
! GTTTGTGTTTGTGGTGGTGA+TGG + chr1_2:52094921-52094940 None:intergenic 45.0%
TTGGGAAGAGGAAGAGAGAT+TGG + chr1_2:52094952-52094971 None:intergenic 45.0%
ATTCAGGCTTGATGTTGTGG+TGG + chr1_2:52095066-52095085 None:intergenic 45.0%
GAGATTCAGGCTTGATGTTG+TGG + chr1_2:52095069-52095088 None:intergenic 45.0%
TGACGAAGAAATGGTAGAGG+AGG + chr1_2:52095118-52095137 None:intergenic 45.0%
GTGTGACGAAGAAATGGTAG+AGG + chr1_2:52095121-52095140 None:intergenic 45.0%
GGGTTTGTGTGACGAAGAAA+TGG + chr1_2:52095127-52095146 None:intergenic 45.0%
!! GACTTTCTTGGCCTTACCAA+CGG - chr1_2:52095412-52095431 Msa0076190:intron 45.0%
TGGTGAGTCCTTGGATGTAA+AGG - chr1_2:52095447-52095466 Msa0076190:intron 45.0%
!! TTTGATGAGGTTGGTGTTGG+TGG + chr1_2:52095503-52095522 None:intergenic 45.0%
AAGTCACAGTCACAACAAGC+AGG - chr1_2:52095537-52095556 Msa0076190:CDS 45.0%
! CAGTCACAACAAGCAGGTTT+TGG - chr1_2:52095543-52095562 Msa0076190:CDS 45.0%
AACAACTGTTCCTGAGTCGT+GGG - chr1_2:52095578-52095597 Msa0076190:CDS 45.0%
ACTCCATGTCCATGACAAGA+AGG + chr1_2:52095801-52095820 None:intergenic 45.0%
! CACTACAAGTTGGAGAGGAG+AGG + chr1_2:52091787-52091806 None:intergenic 50.0%
!!! GGACTTTTGAGGCTGTTGTG+AGG + chr1_2:52091930-52091949 None:intergenic 50.0%
GTCCTCTCCTATGTAGCTGT+AGG + chr1_2:52092402-52092421 None:intergenic 50.0%
GGAGAGGACATAACCTACCA+TGG - chr1_2:52092413-52092432 Msa0076190:CDS 50.0%
CATAACCCTTCAAGGGCTCT+TGG - chr1_2:52092511-52092530 Msa0076190:CDS 50.0%
GATCTCCAAGAGCCCTTGAA+GGG + chr1_2:52092519-52092538 None:intergenic 50.0%
AGATCTCCAAGAGCCCTTGA+AGG + chr1_2:52092520-52092539 None:intergenic 50.0%
AGGGCTCTTGGAGATCTTAC+AGG - chr1_2:52092523-52092542 Msa0076190:CDS 50.0%
ATGCATGGGATAAAGGGGGA+GGG + chr1_2:52094115-52094134 None:intergenic 50.0%
GCCCCATTGGCAAAAAGGTA+AGG + chr1_2:52094144-52094163 None:intergenic 50.0%
TCTCGTAGAATGTGCCCCAT+TGG + chr1_2:52094157-52094176 None:intergenic 50.0%
ACCAACAAAGCCACATCACC+TGG - chr1_2:52094993-52095012 Msa0076190:CDS 50.0%
CCAACAAAGCCACATCACCT+GGG - chr1_2:52094994-52095013 Msa0076190:CDS 50.0%
! GGTTAGGGTTTGGTTGAGGT+GGG + chr1_2:52095021-52095040 None:intergenic 50.0%
! CTAGGGTTAGGGTTTGGTTG+AGG + chr1_2:52095025-52095044 None:intergenic 50.0%
AGGTTGCTAGGGTTAGGGTT+TGG + chr1_2:52095031-52095050 None:intergenic 50.0%
TAGAGGAGGAGAAGAGAGGT+TGG + chr1_2:52095104-52095123 None:intergenic 50.0%
ATGGTAGAGGAGGAGAAGAG+AGG + chr1_2:52095108-52095127 None:intergenic 50.0%
! TGCTGAAAGGTGTGGTGACA+TGG + chr1_2:52095212-52095231 None:intergenic 50.0%
AGTGCAGTTGCTGAAAGGTG+TGG + chr1_2:52095220-52095239 None:intergenic 50.0%
! GGAGAAGTGCAGTTGCTGAA+AGG + chr1_2:52095225-52095244 None:intergenic 50.0%
! TGAGCTGAGAGGTGTGATGT+TGG + chr1_2:52095288-52095307 None:intergenic 50.0%
!! CAGCTCAGCATTGACCAGTT+TGG - chr1_2:52095301-52095320 Msa0076190:intron 50.0%
GCTGAGTCACTGATCCAAAC+TGG + chr1_2:52095318-52095337 None:intergenic 50.0%
CTCACCGGAAAGAACGAAGA+CGG - chr1_2:52095379-52095398 Msa0076190:intron 50.0%
GAGACCGTCTTCGTTCTTTC+CGG + chr1_2:52095386-52095405 None:intergenic 50.0%
!! TTTCTTGGCCTTACCAACGG+CGG - chr1_2:52095415-52095434 Msa0076190:intron 50.0%
! AGGAAATGGTGGTGAGTCCT+TGG - chr1_2:52095438-52095457 Msa0076190:intron 50.0%
CAACAACTGTTCCTGAGTCG+TGG - chr1_2:52095577-52095596 Msa0076190:CDS 50.0%
ACAACTGTTCCTGAGTCGTG+GGG - chr1_2:52095579-52095598 Msa0076190:CDS 50.0%
AGTTACCTGGGTTACCAGGG+AGG + chr1_2:52091966-52091985 None:intergenic 55.0%
GGGGAGGGGACTAATGTACA+CGG + chr1_2:52094100-52094119 None:intergenic 55.0%
TGCATGGGATAAAGGGGGAG+GGG + chr1_2:52094114-52094133 None:intergenic 55.0%
CATGCATGGGATAAAGGGGG+AGG + chr1_2:52094116-52094135 None:intergenic 55.0%
!! CCCAGGTGATGTGGCTTTGT+TGG + chr1_2:52094997-52095016 None:intergenic 55.0%
! GGGTTAGGGTTTGGTTGAGG+TGG + chr1_2:52095022-52095041 None:intergenic 55.0%
! TGCTGTGTGCTGACGTGGAA+GGG + chr1_2:52095172-52095191 None:intergenic 55.0%
! TTGCTGTGTGCTGACGTGGA+AGG + chr1_2:52095173-52095192 None:intergenic 55.0%
! AAGGTTGCTGTGTGCTGACG+TGG + chr1_2:52095177-52095196 None:intergenic 55.0%
GACATGGCAGCAGTGGAAGA+AGG + chr1_2:52095196-52095215 None:intergenic 55.0%
CTCCAGAAAGCAGCAACCGT+CGG - chr1_2:52095241-52095260 Msa0076190:intron 55.0%
! ATGTTGGCTGCCTGTGATGG+CGG + chr1_2:52095272-52095291 None:intergenic 55.0%
! GTGATGTTGGCTGCCTGTGA+TGG + chr1_2:52095275-52095294 None:intergenic 55.0%
CTGGTCAATGCTGAGCTGAG+AGG + chr1_2:52095299-52095318 None:intergenic 55.0%
AACATGAGAGGCTGCCTCAC+CGG - chr1_2:52095364-52095383 Msa0076190:intron 55.0%
CGTCTTCGTTCTTTCCGGTG+AGG + chr1_2:52095381-52095400 None:intergenic 55.0%
AGAACGAAGACGGTCTCACG+AGG - chr1_2:52095389-52095408 Msa0076190:intron 55.0%
GAACGAAGACGGTCTCACGA+GGG - chr1_2:52095390-52095409 Msa0076190:intron 55.0%
GGTCTCACGAGGGACTTTCT+TGG - chr1_2:52095400-52095419 Msa0076190:intron 55.0%
CATTTCCTCCGCCGTTGGTA+AGG + chr1_2:52095426-52095445 None:intergenic 55.0%
CTTACCAACGGCGGAGGAAA+TGG - chr1_2:52095424-52095443 Msa0076190:intron 55.0%
CAACTGTTCCTGAGTCGTGG+GGG - chr1_2:52095580-52095599 Msa0076190:CDS 55.0%
TAACAGTTCCCCCACGACTC+AGG + chr1_2:52095591-52095610 None:intergenic 55.0%
AGAAGCCTCCCTGGTAACCC+AGG - chr1_2:52091958-52091977 Msa0076190:exon 60.0%
GTTTGGTTGAGGTGGGTCCC+AGG + chr1_2:52095014-52095033 None:intergenic 60.0%
GTGTGGTGACATGGCAGCAG+TGG + chr1_2:52095203-52095222 None:intergenic 60.0%
!! CACCGACGGTTGCTGCTTTC+TGG + chr1_2:52095246-52095265 None:intergenic 60.0%
ACCAACGGCGGAGGAAATGG+TGG - chr1_2:52095427-52095446 Msa0076190:intron 60.0%
ACCACCATTTCCTCCGCCGT+TGG + chr1_2:52095431-52095450 None:intergenic 60.0%
GAGGTGGGTCCCAGGTGATG+TGG + chr1_2:52095006-52095025 None:intergenic 65.0%
!! TGTGATGGCGGTGGCACCGA+CGG + chr1_2:52095260-52095279 None:intergenic 65.0%
!! TTGGCTGCCTGTGATGGCGG+TGG + chr1_2:52095269-52095288 None:intergenic 65.0%
!! CTTGGCCTTACCAACGGCGG+AGG - chr1_2:52095418-52095437 Msa0076190:intron 65.0%
!! GTCGGTGCCACCGCCATCAC+AGG - chr1_2:52095259-52095278 Msa0076190:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 52091626 52095837 52091626 ID=Msa0076190;Name=Msa0076190
chr1_2 mRNA 52091626 52095837 52091626 ID=Msa0076190-mRNA-1;Parent=Msa0076190;Name=Msa0076190-mRNA-1;_AED=0.01;_eAED=0.01;_QI=207|0.5|0.66|1|1|1|3|342|417
chr1_2 exon 52091626 52092625 52091626 ID=Msa0076190-mRNA-1:exon:16088;Parent=Msa0076190-mRNA-1
chr1_2 exon 52094765 52095213 52094765 ID=Msa0076190-mRNA-1:exon:16087;Parent=Msa0076190-mRNA-1
chr1_2 exon 52095484 52095837 52095484 ID=Msa0076190-mRNA-1:exon:16086;Parent=Msa0076190-mRNA-1
chr1_2 five_prime_UTR 52095631 52095837 52095631 ID=Msa0076190-mRNA-1:five_prime_utr;Parent=Msa0076190-mRNA-1
chr1_2 CDS 52095484 52095630 52095484 ID=Msa0076190-mRNA-1:cds;Parent=Msa0076190-mRNA-1
chr1_2 CDS 52094765 52095213 52094765 ID=Msa0076190-mRNA-1:cds;Parent=Msa0076190-mRNA-1
chr1_2 CDS 52091968 52092625 52091968 ID=Msa0076190-mRNA-1:cds;Parent=Msa0076190-mRNA-1
chr1_2 three_prime_UTR 52091626 52091967 52091626 ID=Msa0076190-mRNA-1:three_prime_utr;Parent=Msa0076190-mRNA-1
Gene Sequence

>Msa0076190

ATGTTCCCTGCACTAATGTCCAATTCCACTTCTTTCTCAGAAGAAACAAGTGTCTCTTCTACTAGATTAAACCACTTAGTTTCAACCATAAATTCCTCACAACAGCCTCAAAAGTCCAAGAAAAAAGAAGCCTCCCTGGTAACCCAGTATATGATTGACATGTTAATTAATTTTGTAATTGATTCTCTTAATTCAGATCCTGATGCTGAAGTGATAGCTTTATCACCAAAAACACTATTAGCAACAAATAGATTTGTGTGTGAGATCTGCAACAAGGGTTTTCAAAGAGATCAAAACCTACAGCTACATAGGAGAGGACATAACCTACCATGGAAGTTGAAGCAAAGGAACAACAAAGAGGTTATTAAAAAGAGAGCTTATGTTTGTCCAGAGCCTTCATGTGTTCATCATAACCCTTCAAGGGCTCTTGGAGATCTTACAGGAATCAAGAAACATTATAGTAGAAAACATGGTGAGAAAAAATGGAAATGTGATAAGTGCTCAAAGATCTATGCTGTTCATTCTGATTGGAAAGCTCACTCTAAAACCTGTGGTACTAGAGAATATAAATGTGATTGTGGTACCCTTTTTTCCAGGAAGGACAGCTTCATAACTCATAGAGCATTTTGTGATGCATTAGCTGAAGAAAGTGCAAGAATGTCTGCAAACCAATTAGCCATCACCACCACAAACACAAACCCATTAGTCCAATCTCTCTTCCTCTTCCCAAATCAACAACAAAGTTTCCAAAACCAACAAAGCCACATCACCTGGGACCCACCTCAACCAAACCCTAACCCTAGCAACCTTAATAATACTCTCCACCACAACATCAAGCCTGAATCTCCAAATTTTCACACCAACCTCTCTTCTCCTCCTCTACCATTTCTTCGTCACACAAACCCTAAGAGCATAATGACATCATCACCCTTCCACGTCAGCACACAGCAACCTTCTTCCACTGCTGCCATGTCACCACACCTTTCAGCAACTGCACTTCTCCAGAAAGCAGCAACCGTCGGTGCCACCGCCATCACAGGCAGCCAACATCACACCTCTCAGCTCAGCATTGACCAGTTTGGATCAGTGACTCAGCTCAACTCCGTTGATCACTACATTAACAACATGAGAGGCTGCCTCACCGGAAAGAACGAAGACGGTCTCACGAGGGACTTTCTTGGCCTTACCAACGGCGGAGGAAATGGTGGTGAGTCCTTGGATGTAAAGGATATGCTAACATTCACAGGGGTGTAG
Protein sequence

>Msa0076190

MFPALMSNSTSFSEETSVSSTRLNHLVSTINSSQQPQKSKKKEASLVTQYMIDMLINFVIDSLNSDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNNKEVIKKRAYVCPEPSCVHHNPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKIYAVHSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARMSANQLAITTTNTNPLVQSLFLFPNQQQSFQNQQSHITWDPPQPNPNPSNLNNTLHHNIKPESPNFHTNLSSPPLPFLRHTNPKSIMTSSPFHVSTQQPSSTAAMSPHLSATALLQKAATVGATAITGSQHHTSQLSIDQFGSVTQLNSVDHYINNMRGCLTGKNEDGLTRDFLGLTNGGGNGGESLDVKDMLTFTGV*