AlfalfaGEDB | Msa0076190

M. sativa cultivar zhongmu-4 / Msa0076190

KEGG: -
GO: GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0076190	XP_024635863.1	89.810	422	21	3	1	416	1	406	0.0	739

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0076190	sp\|O22759\|IDD12_ARATH	51.892	370	100	10	64	416	61	369	2.17e-110	333

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0076190	A0A396K073	89.810	422	21	3	1	416	1	406	0.0	739

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0076190	TF	C2H2

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0076190	MtrunA17_Chr1g0185121	89.810	422	21	3	1	416	1	406	0.0	739
Msa0076190	MtrunA17_Chr2g0330171	57.143	329	108	10	64	379	54	362	6.73e-109	328
Msa0076190	MtrunA17_Chr1g0191991	59.396	298	87	5	64	344	71	351	1.25e-108	330
Msa0076190	MtrunA17_Chr8g0342421	53.889	360	118	10	6	343	18	351	8.34e-108	327
Msa0076190	MtrunA17_Chr1g0181381	85.119	168	21	1	66	233	48	211	2.61e-107	325
Msa0076190	MtrunA17_Chr1g0151351	56.690	284	89	5	66	349	51	300	1.47e-106	322
Msa0076190	MtrunA17_Chr1g0162971	49.340	379	122	9	66	395	51	408	1.09e-105	319
Msa0076190	MtrunA17_Chr7g0263941	59.859	284	83	8	66	343	44	302	3.90e-102	309
Msa0076190	MtrunA17_Chr4g0040571	86.792	159	20	1	64	222	47	204	8.57e-102	311
Msa0076190	MtrunA17_Chr7g0268961	56.209	306	87	6	66	344	32	317	1.46e-101	310

Showing 1 to 10 of 33 entries

Previous1 2 3 4Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0076190	AT4G02670.2	51.892	370	100	10	64	416	63	371	2.18e-111	333
Msa0076190	AT4G02670.1	51.892	370	100	10	64	416	61	369	2.20e-111	333
Msa0076190	AT3G50700.1	46.085	447	162	12	2	402	1	414	1.50e-106	322
Msa0076190	AT1G55110.3	67.686	229	62	4	6	232	21	239	2.00e-104	317
Msa0076190	AT1G55110.1	67.686	229	62	4	6	232	21	239	2.00e-104	317
Msa0076190	AT1G55110.2	67.686	229	62	4	6	232	21	239	2.00e-104	317
Msa0076190	AT5G03150.1	83.041	171	26	1	66	233	63	233	2.66e-103	315
Msa0076190	AT3G13810.6	87.179	156	20	0	64	219	59	214	8.68e-101	309
Msa0076190	AT3G13810.4	87.179	156	20	0	64	219	78	233	1.07e-100	309
Msa0076190	AT3G13810.1	87.179	156	20	0	64	219	78	233	1.07e-100	309

Showing 1 to 10 of 52 entries

Previous1 2 3 4 5 6Next

Find 134 sgRNAs with CRISPR-Local

Find 271 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTACCATGGGTATATT+TGG	0.189707	1_2:-52091823	Msa0076190:three_prime_UTR
AAACAGTACTCCATGACAAA+AGG	0.510212	1_2:+52091779	None:intergenic
AAACATTATAGTAGAAAACA+TGG	0.647572	1_2:-52094888	Msa0076190:CDS
AAAGCTATCACTTCAGCATC+AGG	0.433390	1_2:+52095140	None:intergenic
AAAGCTCACTCTAAAACCTG+TGG	0.713942	1_2:-52094807	Msa0076190:CDS
AAATATACCCATGGTAATTT+TGG	0.155636	1_2:+52091825	None:intergenic
AACAACTGTTCCTGAGTCGT+GGG	0.538679	1_2:-52091863	Msa0076190:three_prime_UTR
AACAGCACTACAAGTTGGAG+AGG	0.629655	1_2:+52095652	None:intergenic
AACATGAGAGGCTGCCTCAC+CGG	0.528047	1_2:-52092077	Msa0076190:CDS
AACCTACAGCTACATAGGAG+AGG	0.665795	1_2:-52095044	Msa0076190:CDS

Showing 1 to 10 of 134 entries

Previous1 2 3 4 5…14Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAGAAGAGAAAAAAGCT+AGG	+	chr1_2:52091761-52091780	None:intergenic	30.0%
GAAAACATGGTGAGAAAAAA+TGG	-	chr1_2:52092566-52092585	Msa0076190:CDS	30.0%
TTTATATTCTCTAGTACCAC+AGG	+	chr1_2:52092653-52092672	None:intergenic	30.0%
AGTACTATACCTGGAAAAAA+GGG	+	chr1_2:52092689-52092708	None:intergenic	30.0%
TAGTACTATACCTGGAAAAA+AGG	+	chr1_2:52092690-52092709	None:intergenic	30.0%
AACAATAAGGCAAATGCAAT+CGG	+	chr1_2:52092929-52092948	None:intergenic	30.0%
TTGCAGCACAATAAACAATA+AGG	+	chr1_2:52092942-52092961	None:intergenic	30.0%
AATTATGGTAAATACACCGT+AGG	+	chr1_2:52093020-52093039	None:intergenic	30.0%
ACGGTGTATTTACCATAATT+TGG	-	chr1_2:52093020-52093039	Msa0076190:intron	30.0%
CCTTTCATGAAACAATTTCA+AGG	+	chr1_2:52093195-52093214	None:intergenic	30.0%

Showing 1 to 10 of 271 entries

Previous1 2 3 4 5…28Next

Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	52091626	52095837	52091626	ID=Msa0076190;Name=Msa0076190
chr1_2	mRNA	52091626	52095837	52091626	ID=Msa0076190-mRNA-1;Parent=Msa0076190;Name=Msa0076190-mRNA-1;_AED=0.01;_eAED=0.01;_QI=207\|0.5\|0.66\|1\|1\|1\|3\|342\|417
chr1_2	exon	52091626	52092625	52091626	ID=Msa0076190-mRNA-1:exon:16088;Parent=Msa0076190-mRNA-1
chr1_2	exon	52094765	52095213	52094765	ID=Msa0076190-mRNA-1:exon:16087;Parent=Msa0076190-mRNA-1
chr1_2	exon	52095484	52095837	52095484	ID=Msa0076190-mRNA-1:exon:16086;Parent=Msa0076190-mRNA-1
chr1_2	five_prime_UTR	52095631	52095837	52095631	ID=Msa0076190-mRNA-1:five_prime_utr;Parent=Msa0076190-mRNA-1
chr1_2	CDS	52095484	52095630	52095484	ID=Msa0076190-mRNA-1:cds;Parent=Msa0076190-mRNA-1
chr1_2	CDS	52094765	52095213	52094765	ID=Msa0076190-mRNA-1:cds;Parent=Msa0076190-mRNA-1
chr1_2	CDS	52091968	52092625	52091968	ID=Msa0076190-mRNA-1:cds;Parent=Msa0076190-mRNA-1
chr1_2	three_prime_UTR	52091626	52091967	52091626	ID=Msa0076190-mRNA-1:three_prime_utr;Parent=Msa0076190-mRNA-1

Gene Sequence

>Msa0076190

ATGTTCCCTGCACTAATGTCCAATTCCACTTCTTTCTCAGAAGAAACAAGTGTCTCTTCTACTAGATTAAACCACTTAGTTTCAACCATAAATTCCTCACAACAGCCTCAAAAGTCCAAGAAAAAAGAAGCCTCCCTGGTAACCCAGTATATGATTGACATGTTAATTAATTTTGTAATTGATTCTCTTAATTCAGATCCTGATGCTGAAGTGATAGCTTTATCACCAAAAACACTATTAGCAACAAATAGATTTGTGTGTGAGATCTGCAACAAGGGTTTTCAAAGAGATCAAAACCTACAGCTACATAGGAGAGGACATAACCTACCATGGAAGTTGAAGCAAAGGAACAACAAAGAGGTTATTAAAAAGAGAGCTTATGTTTGTCCAGAGCCTTCATGTGTTCATCATAACCCTTCAAGGGCTCTTGGAGATCTTACAGGAATCAAGAAACATTATAGTAGAAAACATGGTGAGAAAAAATGGAAATGTGATAAGTGCTCAAAGATCTATGCTGTTCATTCTGATTGGAAAGCTCACTCTAAAACCTGTGGTACTAGAGAATATAAATGTGATTGTGGTACCCTTTTTTCCAGGAAGGACAGCTTCATAACTCATAGAGCATTTTGTGATGCATTAGCTGAAGAAAGTGCAAGAATGTCTGCAAACCAATTAGCCATCACCACCACAAACACAAACCCATTAGTCCAATCTCTCTTCCTCTTCCCAAATCAACAACAAAGTTTCCAAAACCAACAAAGCCACATCACCTGGGACCCACCTCAACCAAACCCTAACCCTAGCAACCTTAATAATACTCTCCACCACAACATCAAGCCTGAATCTCCAAATTTTCACACCAACCTCTCTTCTCCTCCTCTACCATTTCTTCGTCACACAAACCCTAAGAGCATAATGACATCATCACCCTTCCACGTCAGCACACAGCAACCTTCTTCCACTGCTGCCATGTCACCACACCTTTCAGCAACTGCACTTCTCCAGAAAGCAGCAACCGTCGGTGCCACCGCCATCACAGGCAGCCAACATCACACCTCTCAGCTCAGCATTGACCAGTTTGGATCAGTGACTCAGCTCAACTCCGTTGATCACTACATTAACAACATGAGAGGCTGCCTCACCGGAAAGAACGAAGACGGTCTCACGAGGGACTTTCTTGGCCTTACCAACGGCGGAGGAAATGGTGGTGAGTCCTTGGATGTAAAGGATATGCTAACATTCACAGGGGTGTAG

Protein sequence

>Msa0076190

MFPALMSNSTSFSEETSVSSTRLNHLVSTINSSQQPQKSKKKEASLVTQYMIDMLINFVIDSLNSDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNNKEVIKKRAYVCPEPSCVHHNPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKIYAVHSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARMSANQLAITTTNTNPLVQSLFLFPNQQQSFQNQQSHITWDPPQPNPNPSNLNNTLHHNIKPESPNFHTNLSSPPLPFLRHTNPKSIMTSSPFHVSTQQPSSTAAMSPHLSATALLQKAATVGATAITGSQHHTSQLSIDQFGSVTQLNSVDHYINNMRGCLTGKNEDGLTRDFLGLTNGGGNGGESLDVKDMLTFTGV*