Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0076210 | AES60829.1 | 87.013 | 385 | 37 | 4 | 4 | 388 | 1 | 372 | 0.0 | 640 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0076210 | sp|Q9LUH8|HFA6B_ARATH | 48.060 | 335 | 135 | 7 | 13 | 309 | 41 | 374 | 4.62e-93 | 288 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0076210 | G7ICS1 | 87.013 | 385 | 37 | 4 | 4 | 388 | 1 | 372 | 0.0 | 640 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0076210 | TF | HSF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0076210 | MtrunA17_Chr1g0185131 | 89.685 | 349 | 29 | 3 | 1 | 349 | 1 | 342 | 0.0 | 605 |
| Msa0076210 | MtrunA17_Chr7g0260331 | 55.143 | 350 | 117 | 8 | 1 | 324 | 1 | 336 | 3.61e-108 | 322 |
| Msa0076210 | MtrunA17_Chr1g0204741 | 58.636 | 220 | 85 | 3 | 20 | 234 | 27 | 245 | 3.52e-80 | 249 |
| Msa0076210 | MtrunA17_Chr3g0135831 | 44.518 | 301 | 151 | 6 | 20 | 309 | 33 | 328 | 2.66e-74 | 236 |
| Msa0076210 | MtrunA17_Chr4g0039891 | 49.774 | 221 | 96 | 2 | 25 | 233 | 4 | 221 | 3.15e-65 | 215 |
| Msa0076210 | MtrunA17_Chr5g0410881 | 49.772 | 219 | 91 | 5 | 31 | 234 | 30 | 244 | 1.20e-64 | 214 |
| Msa0076210 | MtrunA17_Chr4g0071051 | 45.536 | 224 | 110 | 3 | 20 | 237 | 88 | 305 | 4.82e-63 | 207 |
| Msa0076210 | MtrunA17_Chr8g0392001 | 44.390 | 205 | 101 | 3 | 33 | 224 | 22 | 226 | 1.28e-47 | 166 |
| Msa0076210 | MtrunA17_Chr8g0379701 | 46.231 | 199 | 90 | 6 | 33 | 218 | 12 | 206 | 2.06e-47 | 166 |
| Msa0076210 | MtrunA17_Chr8g0378061 | 42.672 | 232 | 114 | 8 | 34 | 258 | 23 | 242 | 1.59e-46 | 166 |
| Msa0076210 | MtrunA17_Chr6g0467041 | 44.279 | 201 | 103 | 5 | 33 | 230 | 22 | 216 | 1.80e-46 | 162 |
| Msa0076210 | MtrunA17_Chr6g0485571 | 39.301 | 229 | 121 | 4 | 33 | 248 | 11 | 234 | 8.66e-45 | 158 |
| Msa0076210 | MtrunA17_Chr2g0330821 | 43.889 | 180 | 95 | 3 | 23 | 200 | 73 | 248 | 6.12e-42 | 150 |
| Msa0076210 | MtrunA17_Chr5g0397881 | 65.263 | 95 | 33 | 0 | 31 | 125 | 22 | 116 | 6.73e-42 | 150 |
| Msa0076210 | MtrunA17_Chr6g0472421 | 63.158 | 95 | 35 | 0 | 31 | 125 | 31 | 125 | 2.00e-40 | 146 |
| Msa0076210 | MtrunA17_Chr1g0203601 | 62.105 | 95 | 36 | 0 | 31 | 125 | 16 | 110 | 1.80e-39 | 142 |
| Msa0076210 | MtrunA17_Chr5g0402291 | 41.714 | 175 | 63 | 3 | 31 | 166 | 7 | 181 | 3.31e-39 | 141 |
| Msa0076210 | MtrunA17_Chr5g0441531 | 42.690 | 171 | 72 | 3 | 31 | 176 | 23 | 192 | 5.53e-39 | 140 |
| Msa0076210 | MtrunA17_Chr2g0284481 | 40.331 | 181 | 93 | 3 | 33 | 201 | 15 | 192 | 2.20e-38 | 142 |
| Msa0076210 | MtrunA17_Chr3g0134031 | 64.646 | 99 | 34 | 1 | 31 | 129 | 22 | 119 | 4.00e-38 | 140 |
| Msa0076210 | MtrunA17_Chr7g0257331 | 41.117 | 197 | 91 | 4 | 24 | 197 | 9 | 203 | 5.16e-38 | 137 |
| Msa0076210 | MtrunA17_Chr4g0047421 | 41.176 | 153 | 83 | 2 | 31 | 176 | 31 | 183 | 2.53e-33 | 124 |
| Msa0076210 | MtrunA17_Chr8g0375041 | 40.331 | 181 | 87 | 4 | 28 | 188 | 4 | 183 | 9.17e-33 | 123 |
| Msa0076210 | MtrunA17_Chr1g0179311 | 43.077 | 130 | 70 | 2 | 90 | 215 | 11 | 140 | 1.76e-24 | 103 |
| Msa0076210 | MtrunA17_Chr1g0179321 | 64.384 | 73 | 26 | 0 | 20 | 92 | 36 | 108 | 4.91e-24 | 95.5 |
| Msa0076210 | MtrunA17_Chr2g0330841 | 34.752 | 141 | 84 | 3 | 93 | 230 | 41 | 176 | 1.06e-18 | 87.0 |
| Msa0076210 | MtrunA17_Chr4g0023771 | 54.098 | 61 | 27 | 1 | 33 | 92 | 15 | 75 | 3.04e-16 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0076210 | AT3G22830.1 | 48.060 | 335 | 135 | 7 | 13 | 309 | 41 | 374 | 4.69e-94 | 288 |
| Msa0076210 | AT3G51910.1 | 52.265 | 287 | 93 | 8 | 24 | 309 | 20 | 263 | 1.39e-85 | 261 |
| Msa0076210 | AT3G63350.1 | 43.077 | 325 | 128 | 7 | 18 | 340 | 13 | 282 | 3.56e-77 | 240 |
| Msa0076210 | AT2G26150.1 | 50.732 | 205 | 95 | 2 | 20 | 218 | 31 | 235 | 8.36e-69 | 221 |
| Msa0076210 | AT2G26150.4 | 50.732 | 205 | 95 | 2 | 20 | 218 | 31 | 235 | 8.36e-69 | 221 |
| Msa0076210 | AT1G32330.2 | 47.210 | 233 | 96 | 3 | 18 | 229 | 22 | 248 | 6.89e-64 | 212 |
| Msa0076210 | AT1G32330.1 | 47.210 | 233 | 96 | 3 | 18 | 229 | 22 | 248 | 7.07e-64 | 212 |
| Msa0076210 | AT5G43840.1 | 40.878 | 296 | 135 | 7 | 20 | 298 | 6 | 278 | 1.86e-61 | 200 |
| Msa0076210 | AT4G17750.1 | 43.233 | 266 | 108 | 6 | 15 | 248 | 31 | 285 | 1.60e-60 | 203 |
| Msa0076210 | AT5G16820.1 | 50.952 | 210 | 82 | 4 | 14 | 211 | 16 | 216 | 7.53e-60 | 201 |
| Msa0076210 | AT5G16820.2 | 50.952 | 210 | 82 | 4 | 14 | 211 | 16 | 216 | 7.53e-60 | 201 |
| Msa0076210 | AT3G02990.1 | 47.368 | 209 | 96 | 4 | 33 | 230 | 23 | 228 | 1.50e-56 | 192 |
| Msa0076210 | AT5G03720.2 | 47.761 | 201 | 99 | 3 | 33 | 229 | 55 | 253 | 1.07e-55 | 189 |
| Msa0076210 | AT5G03720.1 | 47.761 | 201 | 99 | 3 | 33 | 229 | 55 | 253 | 1.07e-55 | 189 |
| Msa0076210 | AT1G67970.1 | 49.206 | 189 | 89 | 3 | 33 | 214 | 19 | 207 | 6.59e-53 | 180 |
| Msa0076210 | AT5G54070.1 | 38.835 | 206 | 121 | 2 | 33 | 236 | 71 | 273 | 2.43e-50 | 172 |
| Msa0076210 | AT4G13980.1 | 42.574 | 202 | 108 | 3 | 34 | 232 | 24 | 220 | 3.77e-46 | 165 |
| Msa0076210 | AT3G24520.1 | 41.709 | 199 | 98 | 3 | 33 | 231 | 17 | 197 | 6.04e-45 | 158 |
| Msa0076210 | AT4G18880.1 | 46.237 | 186 | 93 | 2 | 23 | 201 | 5 | 190 | 2.65e-40 | 147 |
| Msa0076210 | AT1G46264.1 | 39.823 | 226 | 80 | 5 | 24 | 195 | 25 | 248 | 7.16e-40 | 145 |
| Msa0076210 | AT4G36990.1 | 63.830 | 94 | 34 | 0 | 31 | 124 | 12 | 105 | 3.16e-39 | 142 |
| Msa0076210 | AT5G62020.1 | 62.105 | 95 | 36 | 0 | 31 | 125 | 21 | 115 | 2.24e-38 | 140 |
| Msa0076210 | AT4G11660.1 | 62.626 | 99 | 36 | 1 | 31 | 129 | 57 | 154 | 2.49e-38 | 142 |
| Msa0076210 | AT5G45710.3 | 39.175 | 194 | 112 | 2 | 33 | 220 | 13 | 206 | 1.07e-36 | 137 |
| Msa0076210 | AT5G45710.1 | 39.175 | 194 | 112 | 2 | 33 | 220 | 13 | 206 | 1.07e-36 | 137 |
| Msa0076210 | AT2G41690.1 | 51.587 | 126 | 47 | 2 | 31 | 143 | 38 | 162 | 2.46e-35 | 130 |
| Msa0076210 | AT2G26150.3 | 44.697 | 132 | 67 | 2 | 93 | 218 | 49 | 180 | 6.33e-30 | 117 |
| Msa0076210 | AT2G26150.2 | 44.697 | 132 | 67 | 2 | 93 | 218 | 49 | 180 | 6.33e-30 | 117 |
| Msa0076210 | AT4G18870.1 | 52.809 | 89 | 37 | 2 | 34 | 120 | 14 | 99 | 9.30e-23 | 97.4 |
| Msa0076210 | AT4G18870.1 | 47.727 | 88 | 46 | 0 | 33 | 120 | 146 | 233 | 1.66e-21 | 94.0 |
| Msa0076210 | AT1G77570.1 | 34.091 | 88 | 55 | 2 | 34 | 118 | 27 | 114 | 3.47e-11 | 61.2 |
Find 77 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTGTCCTTGTTGGGAATT+AGG | 0.117532 | 1_2:+52137088 | None:intergenic |
| GAATTACGTGATTATGAATT+TGG | 0.118681 | 1_2:-52136728 | Msa0076210:CDS |
| ATGCAGAAATTGATCGTTTA+AGG | 0.140595 | 1_2:-52137051 | Msa0076210:CDS |
| ATTATTGTGTTTGAAGTATC+TGG | 0.159629 | 1_2:+52137413 | None:intergenic |
| TTCACTCAGTTATGCTTTCT+AGG | 0.232599 | 1_2:+52136118 | None:intergenic |
| TTCTGTTCCATGAAATTATA+TGG | 0.235121 | 1_2:+52137490 | None:intergenic |
| CAACAAGGACAAGGTTGTTT+TGG | 0.253139 | 1_2:-52137079 | Msa0076210:CDS |
| AACAAGTCCTTCATTTGGTT+GGG | 0.266336 | 1_2:+52137575 | None:intergenic |
| CTTGTTTATTCTGATGAGTT+TGG | 0.282499 | 1_2:-52135930 | Msa0076210:three_prime_UTR |
| AACCACTGAGTCAAGAATTT+AGG | 0.293001 | 1_2:-52136475 | Msa0076210:CDS |
| TTTGCAAATTCCCATCTATC+TGG | 0.293795 | 1_2:+52137184 | None:intergenic |
| CCTTCATTTGGTTGGGGTGG+TGG | 0.306285 | 1_2:+52137582 | None:intergenic |
| ACAATAAGATAAGTATTATA+TGG | 0.316234 | 1_2:+52136043 | None:intergenic |
| AGTCATAGATCATAGATTAA+AGG | 0.329369 | 1_2:+52137701 | None:intergenic |
| GCTATCAAAGAATCTTGTTC+TGG | 0.330741 | 1_2:+52136298 | None:intergenic |
| GTTCCAACCATATAATTTCA+TGG | 0.344866 | 1_2:-52137497 | Msa0076210:CDS |
| GTCATAGATCATAGATTAAA+GGG | 0.344975 | 1_2:+52137702 | None:intergenic |
| AATTACGTGATTATGAATTT+GGG | 0.348862 | 1_2:-52136727 | Msa0076210:CDS |
| CAGATGGAGCAAAGGTTAGA+AGG | 0.354438 | 1_2:-52136953 | Msa0076210:CDS |
| TGCTTGATGATGAAGGGTTC+TGG | 0.373815 | 1_2:-52136586 | Msa0076210:CDS |
| TCATTTGGTTGGGGTGGTGG+TGG | 0.381814 | 1_2:+52137585 | None:intergenic |
| CCTTGTTGGGAATTAGGAAT+AGG | 0.386492 | 1_2:+52137094 | None:intergenic |
| ATTTCAACAAGTCCTTCATT+TGG | 0.388996 | 1_2:+52137570 | None:intergenic |
| CAAAACAACCTTGTCCTTGT+TGG | 0.397714 | 1_2:+52137080 | None:intergenic |
| AAAACAACCTTGTCCTTGTT+GGG | 0.399773 | 1_2:+52137081 | None:intergenic |
| TCTTGTGATTCTAGTGCCTC+AGG | 0.405629 | 1_2:+52136623 | None:intergenic |
| TGTATCCCAAACCACAAAAC+TGG | 0.420129 | 1_2:+52137461 | None:intergenic |
| CAACAAGTCCTTCATTTGGT+TGG | 0.420416 | 1_2:+52137574 | None:intergenic |
| CTCGGTGAAAGAAGAATACT+TGG | 0.431235 | 1_2:-52137619 | Msa0076210:CDS |
| TCATTGTTATCTTCAGAAGT+TGG | 0.432296 | 1_2:+52136518 | None:intergenic |
| TGAATTTGGGATGTCGGAGT+TGG | 0.433366 | 1_2:-52136714 | Msa0076210:CDS |
| ATAGATGTCTTTGCCCTCTC+AGG | 0.446863 | 1_2:+52137152 | None:intergenic |
| TATCTCTGCAAGAATGCAAC+AGG | 0.457341 | 1_2:-52136078 | Msa0076210:three_prime_UTR |
| TGGGGTGGTGGTGGAATCGT+TGG | 0.458015 | 1_2:+52137594 | None:intergenic |
| GTATCTGGGAAGGAGATGAT+TGG | 0.458621 | 1_2:+52137428 | None:intergenic |
| GTTCCATGAAATTATATGGT+TGG | 0.459577 | 1_2:+52137494 | None:intergenic |
| ACAAGTCCTTCATTTGGTTG+GGG | 0.464149 | 1_2:+52137576 | None:intergenic |
| TTGATTGGGTAGGTTGCTGC+TGG | 0.464312 | 1_2:-52136323 | Msa0076210:intron |
| GGGGAAAATAATGGATAAAG+AGG | 0.470921 | 1_2:-52136657 | Msa0076210:CDS |
| AGTCCTTCATTTGGTTGGGG+TGG | 0.486652 | 1_2:+52137579 | None:intergenic |
| ATCTGTCATTGTTTATGTCA+AGG | 0.490894 | 1_2:-52136272 | Msa0076210:CDS |
| ATGTTTAGTATGAAATTTGA+GGG | 0.495224 | 1_2:-52136554 | Msa0076210:CDS |
| GCTTGATGATGAAGGGTTCT+GGG | 0.499647 | 1_2:-52136585 | Msa0076210:CDS |
| AATGTTAGCTATGGAAATGC+AGG | 0.499978 | 1_2:-52136690 | Msa0076210:CDS |
| TTATTGTGTTTGAAGTATCT+GGG | 0.502771 | 1_2:+52137414 | None:intergenic |
| CAAGGAACTAGACTAGGTAT+TGG | 0.504481 | 1_2:-52136782 | Msa0076210:CDS |
| TGATTATGAATTTGGGATGT+CGG | 0.507119 | 1_2:-52136720 | Msa0076210:CDS |
| AATGTTTAGTATGAAATTTG+AGG | 0.507525 | 1_2:-52136555 | Msa0076210:CDS |
| AAACTCATATATGCAATCCT+TGG | 0.512900 | 1_2:+52136002 | None:intergenic |
| TACACTTTATATTCTACAGA+TGG | 0.519014 | 1_2:-52136969 | Msa0076210:CDS |
| GGAGTTGGAAATGTTAGCTA+TGG | 0.532242 | 1_2:-52136699 | Msa0076210:CDS |
| TTGTTTATGTCAAGGACTCA+AGG | 0.535249 | 1_2:-52136264 | Msa0076210:intron |
| ATTACTCAGAAGATATATGA+TGG | 0.535579 | 1_2:-52136159 | Msa0076210:CDS |
| ACTAGAATCACAAGAGAAGA+TGG | 0.536908 | 1_2:-52136615 | Msa0076210:CDS |
| GAGGAACATAAGAAGAAAGA+AGG | 0.543697 | 1_2:-52137128 | Msa0076210:CDS |
| CCACCACCCCAACCAAATGA+AGG | 0.544676 | 1_2:-52137582 | Msa0076210:CDS |
| TGTGTTTGAAGTATCTGGGA+AGG | 0.547658 | 1_2:+52137418 | None:intergenic |
| CAAATGAAAGATTCCTGAGA+GGG | 0.550958 | 1_2:-52137165 | Msa0076210:CDS |
| CCTAATTCCCAACAAGGACA+AGG | 0.555251 | 1_2:-52137088 | Msa0076210:CDS |
| GAAAGAGTGCTTGATGATGA+AGG | 0.560834 | 1_2:-52136593 | Msa0076210:CDS |
| AGATGGAGCAAAGGTTAGAA+GGG | 0.566766 | 1_2:-52136952 | Msa0076210:CDS |
| ATATTCTACAGATGGAGCAA+AGG | 0.570553 | 1_2:-52136961 | Msa0076210:CDS |
| ATCCTAAATTCTTGACTCAG+TGG | 0.576729 | 1_2:+52136473 | None:intergenic |
| GAATTAGGAATAGGCTGAGA+AGG | 0.581690 | 1_2:+52137103 | None:intergenic |
| TCATAATCACGTAATTCTAA+CGG | 0.586096 | 1_2:+52136734 | None:intergenic |
| GGGAAGGAGATGATTGGAGA+AGG | 0.595385 | 1_2:+52137434 | None:intergenic |
| GAGAATGAATTATATGTACT+CGG | 0.595766 | 1_2:-52137637 | Msa0076210:exon |
| GAGGGCAAAGACATCTATTG+AGG | 0.598712 | 1_2:-52137147 | Msa0076210:CDS |
| ATGAGAAGGCTTGTAGAACA+AGG | 0.606606 | 1_2:-52136800 | Msa0076210:CDS |
| ACTATTATTATAATCGACCA+AGG | 0.607327 | 1_2:-52136019 | Msa0076210:three_prime_UTR |
| ATAATTTCATGGAACAGAAG+TGG | 0.614186 | 1_2:-52137486 | Msa0076210:CDS |
| GCAAATGAAAGATTCCTGAG+AGG | 0.614961 | 1_2:-52137166 | Msa0076210:CDS |
| CCTATTCCTAATTCCCAACA+AGG | 0.619154 | 1_2:-52137094 | Msa0076210:CDS |
| AGAGAAACACGTGTTGATGA+CGG | 0.622649 | 1_2:-52137026 | Msa0076210:CDS |
| GTAGAACAAGGAACTAGACT+AGG | 0.635060 | 1_2:-52136788 | Msa0076210:CDS |
| AGAGGAAGTACATGAACCTG+AGG | 0.670115 | 1_2:-52136639 | Msa0076210:CDS |
| AAAGAGTGCTTGATGATGAA+GGG | 0.670867 | 1_2:-52136592 | Msa0076210:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAATAAGATAAGTATTATA+TGG | + | chr1_2:52137599-52137618 | None:intergenic | 15.0% |
| !! | ACAATAAGATAAGTATTATA+TGG | + | chr1_2:52137599-52137618 | None:intergenic | 15.0% |
| !! | TTACAGTTCAAATTTATTCT+CGG | - | chr1_2:52136364-52136383 | Msa0076210:intron | 20.0% |
| !! | AATTACGTGATTATGAATTT+GGG | - | chr1_2:52136912-52136931 | Msa0076210:CDS | 20.0% |
| !! | AATGTTTAGTATGAAATTTG+AGG | - | chr1_2:52137084-52137103 | Msa0076210:CDS | 20.0% |
| !! | ATGTTTAGTATGAAATTTGA+GGG | - | chr1_2:52137085-52137104 | Msa0076210:CDS | 20.0% |
| !! | AGAGAATTTGATATAAACAA+GGG | + | chr1_2:52137282-52137301 | None:intergenic | 20.0% |
| !! | TTACAGTTCAAATTTATTCT+CGG | - | chr1_2:52136364-52136383 | Msa0076210:intron | 20.0% |
| !! | AATTACGTGATTATGAATTT+GGG | - | chr1_2:52136912-52136931 | Msa0076210:CDS | 20.0% |
| !! | AATGTTTAGTATGAAATTTG+AGG | - | chr1_2:52137084-52137103 | Msa0076210:CDS | 20.0% |
| !! | ATGTTTAGTATGAAATTTGA+GGG | - | chr1_2:52137085-52137104 | Msa0076210:CDS | 20.0% |
| !! | AGAGAATTTGATATAAACAA+GGG | + | chr1_2:52137282-52137301 | None:intergenic | 20.0% |
| ! | GTCATAGATCATAGATTAAA+GGG | + | chr1_2:52135940-52135959 | None:intergenic | 25.0% |
| ! | AGTCATAGATCATAGATTAA+AGG | + | chr1_2:52135941-52135960 | None:intergenic | 25.0% |
| ! | GAGAATGAATTATATGTACT+CGG | - | chr1_2:52136002-52136021 | Msa0076210:three_prime_UTR | 25.0% |
| ! | TTCTGTTCCATGAAATTATA+TGG | + | chr1_2:52136152-52136171 | None:intergenic | 25.0% |
| !! | TTATTGTGTTTGAAGTATCT+GGG | + | chr1_2:52136228-52136247 | None:intergenic | 25.0% |
| !! | ATTATTGTGTTTGAAGTATC+TGG | + | chr1_2:52136229-52136248 | None:intergenic | 25.0% |
| !! | TGTGTTATACAATATTTTGC+AGG | - | chr1_2:52136415-52136434 | Msa0076210:intron | 25.0% |
| !! | GTGTTATACAATATTTTGCA+GGG | - | chr1_2:52136416-52136435 | Msa0076210:intron | 25.0% |
| ! | AAAAATTGATCCAGATAGAT+GGG | - | chr1_2:52136445-52136464 | Msa0076210:intron | 25.0% |
| ! | TACACTTTATATTCTACAGA+TGG | - | chr1_2:52136670-52136689 | Msa0076210:CDS | 25.0% |
| ! | TCATAATCACGTAATTCTAA+CGG | + | chr1_2:52136908-52136927 | None:intergenic | 25.0% |
| ! | GAATTACGTGATTATGAATT+TGG | - | chr1_2:52136911-52136930 | Msa0076210:CDS | 25.0% |
| !! | AAGTCAATGTTTTACTTCAA+AGG | - | chr1_2:52137228-52137247 | Msa0076210:intron | 25.0% |
| ! | GAGAGAATTTGATATAAACA+AGG | + | chr1_2:52137283-52137302 | None:intergenic | 25.0% |
| ! | AGGTAATACAAAATTACAAC+AGG | + | chr1_2:52137448-52137467 | None:intergenic | 25.0% |
| ! | ATTACTCAGAAGATATATGA+TGG | - | chr1_2:52137480-52137499 | Msa0076210:CDS | 25.0% |
| ! | ACTATTATTATAATCGACCA+AGG | - | chr1_2:52137620-52137639 | Msa0076210:CDS | 25.0% |
| ! | GTCATAGATCATAGATTAAA+GGG | + | chr1_2:52135940-52135959 | None:intergenic | 25.0% |
| ! | AGTCATAGATCATAGATTAA+AGG | + | chr1_2:52135941-52135960 | None:intergenic | 25.0% |
| ! | GAGAATGAATTATATGTACT+CGG | - | chr1_2:52136002-52136021 | Msa0076210:three_prime_UTR | 25.0% |
| ! | TTCTGTTCCATGAAATTATA+TGG | + | chr1_2:52136152-52136171 | None:intergenic | 25.0% |
| !! | TTATTGTGTTTGAAGTATCT+GGG | + | chr1_2:52136228-52136247 | None:intergenic | 25.0% |
| !! | ATTATTGTGTTTGAAGTATC+TGG | + | chr1_2:52136229-52136248 | None:intergenic | 25.0% |
| !! | TGTGTTATACAATATTTTGC+AGG | - | chr1_2:52136415-52136434 | Msa0076210:intron | 25.0% |
| !! | GTGTTATACAATATTTTGCA+GGG | - | chr1_2:52136416-52136435 | Msa0076210:intron | 25.0% |
| ! | AAAAATTGATCCAGATAGAT+GGG | - | chr1_2:52136445-52136464 | Msa0076210:intron | 25.0% |
| ! | TACACTTTATATTCTACAGA+TGG | - | chr1_2:52136670-52136689 | Msa0076210:CDS | 25.0% |
| ! | TCATAATCACGTAATTCTAA+CGG | + | chr1_2:52136908-52136927 | None:intergenic | 25.0% |
| ! | GAATTACGTGATTATGAATT+TGG | - | chr1_2:52136911-52136930 | Msa0076210:CDS | 25.0% |
| !! | AAGTCAATGTTTTACTTCAA+AGG | - | chr1_2:52137228-52137247 | Msa0076210:intron | 25.0% |
| ! | GAGAGAATTTGATATAAACA+AGG | + | chr1_2:52137283-52137302 | None:intergenic | 25.0% |
| ! | AGGTAATACAAAATTACAAC+AGG | + | chr1_2:52137448-52137467 | None:intergenic | 25.0% |
| ! | ATTACTCAGAAGATATATGA+TGG | - | chr1_2:52137480-52137499 | Msa0076210:CDS | 25.0% |
| ! | ACTATTATTATAATCGACCA+AGG | - | chr1_2:52137620-52137639 | Msa0076210:CDS | 25.0% |
| ATTTCAACAAGTCCTTCATT+TGG | + | chr1_2:52136072-52136091 | None:intergenic | 30.0% | |
| !! | TCAAATGTTTTTGTGAGGAA+TGG | + | chr1_2:52136105-52136124 | None:intergenic | 30.0% |
| !! | CTACATCAAATGTTTTTGTG+AGG | + | chr1_2:52136110-52136129 | None:intergenic | 30.0% |
| GTTCCAACCATATAATTTCA+TGG | - | chr1_2:52136142-52136161 | Msa0076210:CDS | 30.0% | |
| GTTCCATGAAATTATATGGT+TGG | + | chr1_2:52136148-52136167 | None:intergenic | 30.0% | |
| ATAATTTCATGGAACAGAAG+TGG | - | chr1_2:52136153-52136172 | Msa0076210:CDS | 30.0% | |
| GAAAAATTGATCCAGATAGA+TGG | - | chr1_2:52136444-52136463 | Msa0076210:intron | 30.0% | |
| ATGCAGAAATTGATCGTTTA+AGG | - | chr1_2:52136588-52136607 | Msa0076210:CDS | 30.0% | |
| !!! | TCTCTTTTTGTTGGATTAGT+TGG | + | chr1_2:52136781-52136800 | None:intergenic | 30.0% |
| ! | CCTTTTTCTTCTCTTTTTGT+TGG | + | chr1_2:52136790-52136809 | None:intergenic | 30.0% |
| CCAACAAAAAGAGAAGAAAA+AGG | - | chr1_2:52136787-52136806 | Msa0076210:CDS | 30.0% | |
| ! | TGATTATGAATTTGGGATGT+CGG | - | chr1_2:52136919-52136938 | Msa0076210:CDS | 30.0% |
| TCATTGTTATCTTCAGAAGT+TGG | + | chr1_2:52137124-52137143 | None:intergenic | 30.0% | |
| TCATGTTTCTTGTGTTTGAT+TGG | - | chr1_2:52137301-52137320 | Msa0076210:intron | 30.0% | |
| CATGTTTCTTGTGTTTGATT+GGG | - | chr1_2:52137302-52137321 | Msa0076210:intron | 30.0% | |
| ATCTGTCATTGTTTATGTCA+AGG | - | chr1_2:52137367-52137386 | Msa0076210:intron | 30.0% | |
| TATCTACATATATAGCTTCC+TGG | + | chr1_2:52137417-52137436 | None:intergenic | 30.0% | |
| TGAGTAATCTACATTCATCA+AGG | + | chr1_2:52137468-52137487 | None:intergenic | 30.0% | |
| AAACTCATATATGCAATCCT+TGG | + | chr1_2:52137640-52137659 | None:intergenic | 30.0% | |
| CTTGTTTATTCTGATGAGTT+TGG | - | chr1_2:52137709-52137728 | Msa0076210:five_prime_UTR | 30.0% | |
| ATTTCAACAAGTCCTTCATT+TGG | + | chr1_2:52136072-52136091 | None:intergenic | 30.0% | |
| !! | TCAAATGTTTTTGTGAGGAA+TGG | + | chr1_2:52136105-52136124 | None:intergenic | 30.0% |
| !! | CTACATCAAATGTTTTTGTG+AGG | + | chr1_2:52136110-52136129 | None:intergenic | 30.0% |
| GTTCCAACCATATAATTTCA+TGG | - | chr1_2:52136142-52136161 | Msa0076210:CDS | 30.0% | |
| GTTCCATGAAATTATATGGT+TGG | + | chr1_2:52136148-52136167 | None:intergenic | 30.0% | |
| ATAATTTCATGGAACAGAAG+TGG | - | chr1_2:52136153-52136172 | Msa0076210:CDS | 30.0% | |
| GAAAAATTGATCCAGATAGA+TGG | - | chr1_2:52136444-52136463 | Msa0076210:intron | 30.0% | |
| ATGCAGAAATTGATCGTTTA+AGG | - | chr1_2:52136588-52136607 | Msa0076210:CDS | 30.0% | |
| !!! | TCTCTTTTTGTTGGATTAGT+TGG | + | chr1_2:52136781-52136800 | None:intergenic | 30.0% |
| ! | CCTTTTTCTTCTCTTTTTGT+TGG | + | chr1_2:52136790-52136809 | None:intergenic | 30.0% |
| CCAACAAAAAGAGAAGAAAA+AGG | - | chr1_2:52136787-52136806 | Msa0076210:CDS | 30.0% | |
| ! | TGATTATGAATTTGGGATGT+CGG | - | chr1_2:52136919-52136938 | Msa0076210:CDS | 30.0% |
| TCATTGTTATCTTCAGAAGT+TGG | + | chr1_2:52137124-52137143 | None:intergenic | 30.0% | |
| TCATGTTTCTTGTGTTTGAT+TGG | - | chr1_2:52137301-52137320 | Msa0076210:intron | 30.0% | |
| CATGTTTCTTGTGTTTGATT+GGG | - | chr1_2:52137302-52137321 | Msa0076210:intron | 30.0% | |
| ATCTGTCATTGTTTATGTCA+AGG | - | chr1_2:52137367-52137386 | Msa0076210:intron | 30.0% | |
| TATCTACATATATAGCTTCC+TGG | + | chr1_2:52137417-52137436 | None:intergenic | 30.0% | |
| TGAGTAATCTACATTCATCA+AGG | + | chr1_2:52137468-52137487 | None:intergenic | 30.0% | |
| AAACTCATATATGCAATCCT+TGG | + | chr1_2:52137640-52137659 | None:intergenic | 30.0% | |
| CTTGTTTATTCTGATGAGTT+TGG | - | chr1_2:52137709-52137728 | Msa0076210:five_prime_UTR | 30.0% | |
| AACAAGTCCTTCATTTGGTT+GGG | + | chr1_2:52136067-52136086 | None:intergenic | 35.0% | |
| TGATCCTAATGTCTCTATCT+AGG | - | chr1_2:52136307-52136326 | Msa0076210:CDS | 35.0% | |
| !!! | ATGTTTTCTCGTACTGATTG+TGG | - | chr1_2:52136389-52136408 | Msa0076210:intron | 35.0% |
| TTTGCAAATTCCCATCTATC+TGG | + | chr1_2:52136458-52136477 | None:intergenic | 35.0% | |
| CAAATGAAAGATTCCTGAGA+GGG | - | chr1_2:52136474-52136493 | Msa0076210:CDS | 35.0% | |
| GAGGAACATAAGAAGAAAGA+AGG | - | chr1_2:52136511-52136530 | Msa0076210:CDS | 35.0% | |
| AAAACAACCTTGTCCTTGTT+GGG | + | chr1_2:52136561-52136580 | None:intergenic | 35.0% | |
| ATATTCTACAGATGGAGCAA+AGG | - | chr1_2:52136678-52136697 | Msa0076210:CDS | 35.0% | |
| !! | TCTCATTTTTGTCATGGTCA+CGG | + | chr1_2:52136825-52136844 | None:intergenic | 35.0% |
| TGACCATGACAAAAATGAGA+AGG | - | chr1_2:52136825-52136844 | Msa0076210:CDS | 35.0% | |
| !! | AAGCCTTCTCATTTTTGTCA+TGG | + | chr1_2:52136831-52136850 | None:intergenic | 35.0% |
| AATGTTAGCTATGGAAATGC+AGG | - | chr1_2:52136949-52136968 | Msa0076210:CDS | 35.0% | |
| !! | TTTTGGAAGGGGGAAAATAA+TGG | - | chr1_2:52136973-52136992 | Msa0076210:CDS | 35.0% |
| !! | GGGGAAAATAATGGATAAAG+AGG | - | chr1_2:52136982-52137001 | Msa0076210:CDS | 35.0% |
| ACTAGAATCACAAGAGAAGA+TGG | - | chr1_2:52137024-52137043 | Msa0076210:CDS | 35.0% | |
| !! | AAAGAGTGCTTGATGATGAA+GGG | - | chr1_2:52137047-52137066 | Msa0076210:CDS | 35.0% |
| AACCACTGAGTCAAGAATTT+AGG | - | chr1_2:52137164-52137183 | Msa0076210:CDS | 35.0% | |
| ATCCTAAATTCTTGACTCAG+TGG | + | chr1_2:52137169-52137188 | None:intergenic | 35.0% | |
| TTTCTTGTGTTTGATTGGGT+AGG | - | chr1_2:52137306-52137325 | Msa0076210:intron | 35.0% | |
| GCTATCAAAGAATCTTGTTC+TGG | + | chr1_2:52137344-52137363 | None:intergenic | 35.0% | |
| TTGTTTATGTCAAGGACTCA+AGG | - | chr1_2:52137375-52137394 | Msa0076210:intron | 35.0% | |
| !!! | GGTTCAATTTTTTTACCACC+AGG | - | chr1_2:52137396-52137415 | Msa0076210:CDS | 35.0% |
| TTCACTCAGTTATGCTTTCT+AGG | + | chr1_2:52137524-52137543 | None:intergenic | 35.0% | |
| AACAAGTCCTTCATTTGGTT+GGG | + | chr1_2:52136067-52136086 | None:intergenic | 35.0% | |
| TGATCCTAATGTCTCTATCT+AGG | - | chr1_2:52136307-52136326 | Msa0076210:CDS | 35.0% | |
| !!! | ATGTTTTCTCGTACTGATTG+TGG | - | chr1_2:52136389-52136408 | Msa0076210:intron | 35.0% |
| TTTGCAAATTCCCATCTATC+TGG | + | chr1_2:52136458-52136477 | None:intergenic | 35.0% | |
| CAAATGAAAGATTCCTGAGA+GGG | - | chr1_2:52136474-52136493 | Msa0076210:CDS | 35.0% | |
| GAGGAACATAAGAAGAAAGA+AGG | - | chr1_2:52136511-52136530 | Msa0076210:CDS | 35.0% | |
| AAAACAACCTTGTCCTTGTT+GGG | + | chr1_2:52136561-52136580 | None:intergenic | 35.0% | |
| ATATTCTACAGATGGAGCAA+AGG | - | chr1_2:52136678-52136697 | Msa0076210:CDS | 35.0% | |
| !! | TCTCATTTTTGTCATGGTCA+CGG | + | chr1_2:52136825-52136844 | None:intergenic | 35.0% |
| TGACCATGACAAAAATGAGA+AGG | - | chr1_2:52136825-52136844 | Msa0076210:CDS | 35.0% | |
| !! | AAGCCTTCTCATTTTTGTCA+TGG | + | chr1_2:52136831-52136850 | None:intergenic | 35.0% |
| AATGTTAGCTATGGAAATGC+AGG | - | chr1_2:52136949-52136968 | Msa0076210:CDS | 35.0% | |
| !! | TTTTGGAAGGGGGAAAATAA+TGG | - | chr1_2:52136973-52136992 | Msa0076210:CDS | 35.0% |
| !! | GGGGAAAATAATGGATAAAG+AGG | - | chr1_2:52136982-52137001 | Msa0076210:CDS | 35.0% |
| ACTAGAATCACAAGAGAAGA+TGG | - | chr1_2:52137024-52137043 | Msa0076210:CDS | 35.0% | |
| !! | AAAGAGTGCTTGATGATGAA+GGG | - | chr1_2:52137047-52137066 | Msa0076210:CDS | 35.0% |
| AACCACTGAGTCAAGAATTT+AGG | - | chr1_2:52137164-52137183 | Msa0076210:CDS | 35.0% | |
| ATCCTAAATTCTTGACTCAG+TGG | + | chr1_2:52137169-52137188 | None:intergenic | 35.0% | |
| TTTCTTGTGTTTGATTGGGT+AGG | - | chr1_2:52137306-52137325 | Msa0076210:intron | 35.0% | |
| GCTATCAAAGAATCTTGTTC+TGG | + | chr1_2:52137344-52137363 | None:intergenic | 35.0% | |
| TTGTTTATGTCAAGGACTCA+AGG | - | chr1_2:52137375-52137394 | Msa0076210:intron | 35.0% | |
| !!! | GGTTCAATTTTTTTACCACC+AGG | - | chr1_2:52137396-52137415 | Msa0076210:CDS | 35.0% |
| TTCACTCAGTTATGCTTTCT+AGG | + | chr1_2:52137524-52137543 | None:intergenic | 35.0% | |
| CTCGGTGAAAGAAGAATACT+TGG | - | chr1_2:52136020-52136039 | Msa0076210:three_prime_UTR | 40.0% | |
| ACAAGTCCTTCATTTGGTTG+GGG | + | chr1_2:52136066-52136085 | None:intergenic | 40.0% | |
| CAACAAGTCCTTCATTTGGT+TGG | + | chr1_2:52136068-52136087 | None:intergenic | 40.0% | |
| ! | GTTTTTGTGAGGAATGGTTG+TGG | + | chr1_2:52136099-52136118 | None:intergenic | 40.0% |
| TGTATCCCAAACCACAAAAC+TGG | + | chr1_2:52136181-52136200 | None:intergenic | 40.0% | |
| ! | TGTGTTTGAAGTATCTGGGA+AGG | + | chr1_2:52136224-52136243 | None:intergenic | 40.0% |
| CTGACCTAGATAGAGACATT+AGG | + | chr1_2:52136314-52136333 | None:intergenic | 40.0% | |
| GCAAATGAAAGATTCCTGAG+AGG | - | chr1_2:52136473-52136492 | Msa0076210:CDS | 40.0% | |
| GAATTAGGAATAGGCTGAGA+AGG | + | chr1_2:52136539-52136558 | None:intergenic | 40.0% | |
| CCTTGTTGGGAATTAGGAAT+AGG | + | chr1_2:52136548-52136567 | None:intergenic | 40.0% | |
| CCTATTCCTAATTCCCAACA+AGG | - | chr1_2:52136545-52136564 | Msa0076210:CDS | 40.0% | |
| CAAAACAACCTTGTCCTTGT+TGG | + | chr1_2:52136562-52136581 | None:intergenic | 40.0% | |
| ! | CAACAAGGACAAGGTTGTTT+TGG | - | chr1_2:52136560-52136579 | Msa0076210:CDS | 40.0% |
| ! | AGAGAAACACGTGTTGATGA+CGG | - | chr1_2:52136613-52136632 | Msa0076210:CDS | 40.0% |
| AGATGGAGCAAAGGTTAGAA+GGG | - | chr1_2:52136687-52136706 | Msa0076210:CDS | 40.0% | |
| ATGAGAAGGCTTGTAGAACA+AGG | - | chr1_2:52136839-52136858 | Msa0076210:CDS | 40.0% | |
| GTAGAACAAGGAACTAGACT+AGG | - | chr1_2:52136851-52136870 | Msa0076210:CDS | 40.0% | |
| CAAGGAACTAGACTAGGTAT+TGG | - | chr1_2:52136857-52136876 | Msa0076210:CDS | 40.0% | |
| GGAGTTGGAAATGTTAGCTA+TGG | - | chr1_2:52136940-52136959 | Msa0076210:CDS | 40.0% | |
| ! | GCTATGGAAATGCAGGTTTT+TGG | - | chr1_2:52136956-52136975 | Msa0076210:CDS | 40.0% |
| !! | TGGAAATGCAGGTTTTTGGA+AGG | - | chr1_2:52136960-52136979 | Msa0076210:CDS | 40.0% |
| !! | GGAAATGCAGGTTTTTGGAA+GGG | - | chr1_2:52136961-52136980 | Msa0076210:CDS | 40.0% |
| !! | GAAATGCAGGTTTTTGGAAG+GGG | - | chr1_2:52136962-52136981 | Msa0076210:CDS | 40.0% |
| !! | AAATGCAGGTTTTTGGAAGG+GGG | - | chr1_2:52136963-52136982 | Msa0076210:CDS | 40.0% |
| !! | GAAAGAGTGCTTGATGATGA+AGG | - | chr1_2:52137046-52137065 | Msa0076210:CDS | 40.0% |
| CTACATATATAGCTTCCTGG+TGG | + | chr1_2:52137414-52137433 | None:intergenic | 40.0% | |
| TATCTCTGCAAGAATGCAAC+AGG | - | chr1_2:52137561-52137580 | Msa0076210:CDS | 40.0% | |
| CTCGGTGAAAGAAGAATACT+TGG | - | chr1_2:52136020-52136039 | Msa0076210:three_prime_UTR | 40.0% | |
| ACAAGTCCTTCATTTGGTTG+GGG | + | chr1_2:52136066-52136085 | None:intergenic | 40.0% | |
| CAACAAGTCCTTCATTTGGT+TGG | + | chr1_2:52136068-52136087 | None:intergenic | 40.0% | |
| ! | GTTTTTGTGAGGAATGGTTG+TGG | + | chr1_2:52136099-52136118 | None:intergenic | 40.0% |
| TGTATCCCAAACCACAAAAC+TGG | + | chr1_2:52136181-52136200 | None:intergenic | 40.0% | |
| ! | TGTGTTTGAAGTATCTGGGA+AGG | + | chr1_2:52136224-52136243 | None:intergenic | 40.0% |
| CTGACCTAGATAGAGACATT+AGG | + | chr1_2:52136314-52136333 | None:intergenic | 40.0% | |
| GCAAATGAAAGATTCCTGAG+AGG | - | chr1_2:52136473-52136492 | Msa0076210:CDS | 40.0% | |
| GAATTAGGAATAGGCTGAGA+AGG | + | chr1_2:52136539-52136558 | None:intergenic | 40.0% | |
| CCTTGTTGGGAATTAGGAAT+AGG | + | chr1_2:52136548-52136567 | None:intergenic | 40.0% | |
| CCTATTCCTAATTCCCAACA+AGG | - | chr1_2:52136545-52136564 | Msa0076210:CDS | 40.0% | |
| CAAAACAACCTTGTCCTTGT+TGG | + | chr1_2:52136562-52136581 | None:intergenic | 40.0% | |
| ! | CAACAAGGACAAGGTTGTTT+TGG | - | chr1_2:52136560-52136579 | Msa0076210:CDS | 40.0% |
| ! | AGAGAAACACGTGTTGATGA+CGG | - | chr1_2:52136613-52136632 | Msa0076210:CDS | 40.0% |
| AGATGGAGCAAAGGTTAGAA+GGG | - | chr1_2:52136687-52136706 | Msa0076210:CDS | 40.0% | |
| ATGAGAAGGCTTGTAGAACA+AGG | - | chr1_2:52136839-52136858 | Msa0076210:CDS | 40.0% | |
| GTAGAACAAGGAACTAGACT+AGG | - | chr1_2:52136851-52136870 | Msa0076210:CDS | 40.0% | |
| CAAGGAACTAGACTAGGTAT+TGG | - | chr1_2:52136857-52136876 | Msa0076210:CDS | 40.0% | |
| GGAGTTGGAAATGTTAGCTA+TGG | - | chr1_2:52136940-52136959 | Msa0076210:CDS | 40.0% | |
| ! | GCTATGGAAATGCAGGTTTT+TGG | - | chr1_2:52136956-52136975 | Msa0076210:CDS | 40.0% |
| !! | TGGAAATGCAGGTTTTTGGA+AGG | - | chr1_2:52136960-52136979 | Msa0076210:CDS | 40.0% |
| !! | GGAAATGCAGGTTTTTGGAA+GGG | - | chr1_2:52136961-52136980 | Msa0076210:CDS | 40.0% |
| !! | GAAATGCAGGTTTTTGGAAG+GGG | - | chr1_2:52136962-52136981 | Msa0076210:CDS | 40.0% |
| !! | AAATGCAGGTTTTTGGAAGG+GGG | - | chr1_2:52136963-52136982 | Msa0076210:CDS | 40.0% |
| !! | GAAAGAGTGCTTGATGATGA+AGG | - | chr1_2:52137046-52137065 | Msa0076210:CDS | 40.0% |
| CTACATATATAGCTTCCTGG+TGG | + | chr1_2:52137414-52137433 | None:intergenic | 40.0% | |
| TATCTCTGCAAGAATGCAAC+AGG | - | chr1_2:52137561-52137580 | Msa0076210:CDS | 40.0% | |
| !! | TGGCACCAGTTTTGTGGTTT+GGG | - | chr1_2:52136173-52136192 | Msa0076210:intron | 45.0% |
| GTATCTGGGAAGGAGATGAT+TGG | + | chr1_2:52136214-52136233 | None:intergenic | 45.0% | |
| ATAGATGTCTTTGCCCTCTC+AGG | + | chr1_2:52136490-52136509 | None:intergenic | 45.0% | |
| GAGGGCAAAGACATCTATTG+AGG | - | chr1_2:52136492-52136511 | Msa0076210:CDS | 45.0% | |
| CCTTGTCCTTGTTGGGAATT+AGG | + | chr1_2:52136554-52136573 | None:intergenic | 45.0% | |
| CCTAATTCCCAACAAGGACA+AGG | - | chr1_2:52136551-52136570 | Msa0076210:CDS | 45.0% | |
| CAGATGGAGCAAAGGTTAGA+AGG | - | chr1_2:52136686-52136705 | Msa0076210:CDS | 45.0% | |
| ! | TGAATTTGGGATGTCGGAGT+TGG | - | chr1_2:52136925-52136944 | Msa0076210:CDS | 45.0% |
| ! | AGAGGAAGTACATGAACCTG+AGG | - | chr1_2:52137000-52137019 | Msa0076210:CDS | 45.0% |
| TCTTGTGATTCTAGTGCCTC+AGG | + | chr1_2:52137019-52137038 | None:intergenic | 45.0% | |
| !! | TGCTTGATGATGAAGGGTTC+TGG | - | chr1_2:52137053-52137072 | Msa0076210:CDS | 45.0% |
| !! | GCTTGATGATGAAGGGTTCT+GGG | - | chr1_2:52137054-52137073 | Msa0076210:CDS | 45.0% |
| !! | TGGCACCAGTTTTGTGGTTT+GGG | - | chr1_2:52136173-52136192 | Msa0076210:intron | 45.0% |
| GTATCTGGGAAGGAGATGAT+TGG | + | chr1_2:52136214-52136233 | None:intergenic | 45.0% | |
| ATAGATGTCTTTGCCCTCTC+AGG | + | chr1_2:52136490-52136509 | None:intergenic | 45.0% | |
| GAGGGCAAAGACATCTATTG+AGG | - | chr1_2:52136492-52136511 | Msa0076210:CDS | 45.0% | |
| CCTTGTCCTTGTTGGGAATT+AGG | + | chr1_2:52136554-52136573 | None:intergenic | 45.0% | |
| CCTAATTCCCAACAAGGACA+AGG | - | chr1_2:52136551-52136570 | Msa0076210:CDS | 45.0% | |
| CAGATGGAGCAAAGGTTAGA+AGG | - | chr1_2:52136686-52136705 | Msa0076210:CDS | 45.0% | |
| ! | TGAATTTGGGATGTCGGAGT+TGG | - | chr1_2:52136925-52136944 | Msa0076210:CDS | 45.0% |
| ! | AGAGGAAGTACATGAACCTG+AGG | - | chr1_2:52137000-52137019 | Msa0076210:CDS | 45.0% |
| TCTTGTGATTCTAGTGCCTC+AGG | + | chr1_2:52137019-52137038 | None:intergenic | 45.0% | |
| !! | TGCTTGATGATGAAGGGTTC+TGG | - | chr1_2:52137053-52137072 | Msa0076210:CDS | 45.0% |
| !! | GCTTGATGATGAAGGGTTCT+GGG | - | chr1_2:52137054-52137073 | Msa0076210:CDS | 45.0% |
| AGTCCTTCATTTGGTTGGGG+TGG | + | chr1_2:52136063-52136082 | None:intergenic | 50.0% | |
| ! | CAGAAGTGGCACCAGTTTTG+TGG | - | chr1_2:52136167-52136186 | Msa0076210:intron | 50.0% |
| !! | GTGGCACCAGTTTTGTGGTT+TGG | - | chr1_2:52136172-52136191 | Msa0076210:intron | 50.0% |
| GGGAAGGAGATGATTGGAGA+AGG | + | chr1_2:52136208-52136227 | None:intergenic | 50.0% | |
| TTGATTGGGTAGGTTGCTGC+TGG | - | chr1_2:52137316-52137335 | Msa0076210:intron | 50.0% | |
| AGTCCTTCATTTGGTTGGGG+TGG | + | chr1_2:52136063-52136082 | None:intergenic | 50.0% | |
| ! | CAGAAGTGGCACCAGTTTTG+TGG | - | chr1_2:52136167-52136186 | Msa0076210:intron | 50.0% |
| !! | GTGGCACCAGTTTTGTGGTT+TGG | - | chr1_2:52136172-52136191 | Msa0076210:intron | 50.0% |
| GGGAAGGAGATGATTGGAGA+AGG | + | chr1_2:52136208-52136227 | None:intergenic | 50.0% | |
| TTGATTGGGTAGGTTGCTGC+TGG | - | chr1_2:52137316-52137335 | Msa0076210:intron | 50.0% | |
| ! | TCATTTGGTTGGGGTGGTGG+TGG | + | chr1_2:52136057-52136076 | None:intergenic | 55.0% |
| CCTTCATTTGGTTGGGGTGG+TGG | + | chr1_2:52136060-52136079 | None:intergenic | 55.0% | |
| CCACCACCCCAACCAAATGA+AGG | - | chr1_2:52136057-52136076 | Msa0076210:three_prime_UTR | 55.0% | |
| ! | TCATTTGGTTGGGGTGGTGG+TGG | + | chr1_2:52136057-52136076 | None:intergenic | 55.0% |
| CCTTCATTTGGTTGGGGTGG+TGG | + | chr1_2:52136060-52136079 | None:intergenic | 55.0% | |
| CCACCACCCCAACCAAATGA+AGG | - | chr1_2:52136057-52136076 | Msa0076210:three_prime_UTR | 55.0% | |
| !! | TGGGGTGGTGGTGGAATCGT+TGG | + | chr1_2:52136048-52136067 | None:intergenic | 60.0% |
| !! | TGGGGTGGTGGTGGAATCGT+TGG | + | chr1_2:52136048-52136067 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 52135926 | 52137735 | 52135926 | ID=Msa0076210;Name=Msa0076210 |
| chr1_2 | mRNA | 52135926 | 52137735 | 52135926 | ID=Msa0076210-mRNA-1;Parent=Msa0076210;Name=Msa0076210-mRNA-1;_AED=0.19;_eAED=0.19;_QI=80|0.66|0.5|1|1|1|4|193|391 |
| chr1_2 | exon | 52135926 | 52136181 | 52135926 | ID=Msa0076210-mRNA-1:exon:16092;Parent=Msa0076210-mRNA-1 |
| chr1_2 | exon | 52136265 | 52136333 | 52136265 | ID=Msa0076210-mRNA-1:exon:16091;Parent=Msa0076210-mRNA-1 |
| chr1_2 | exon | 52136457 | 52137224 | 52136457 | ID=Msa0076210-mRNA-1:exon:16090;Parent=Msa0076210-mRNA-1 |
| chr1_2 | exon | 52137380 | 52137735 | 52137380 | ID=Msa0076210-mRNA-1:exon:16089;Parent=Msa0076210-mRNA-1 |
| chr1_2 | five_prime_UTR | 52137656 | 52137735 | 52137656 | ID=Msa0076210-mRNA-1:five_prime_utr;Parent=Msa0076210-mRNA-1 |
| chr1_2 | CDS | 52137380 | 52137655 | 52137380 | ID=Msa0076210-mRNA-1:cds;Parent=Msa0076210-mRNA-1 |
| chr1_2 | CDS | 52136457 | 52137224 | 52136457 | ID=Msa0076210-mRNA-1:cds;Parent=Msa0076210-mRNA-1 |
| chr1_2 | CDS | 52136265 | 52136333 | 52136265 | ID=Msa0076210-mRNA-1:cds;Parent=Msa0076210-mRNA-1 |
| chr1_2 | CDS | 52136119 | 52136181 | 52136119 | ID=Msa0076210-mRNA-1:cds;Parent=Msa0076210-mRNA-1 |
| chr1_2 | three_prime_UTR | 52135926 | 52136118 | 52135926 | ID=Msa0076210-mRNA-1:three_prime_utr;Parent=Msa0076210-mRNA-1 |
| Gene Sequence |
| Protein sequence |
