Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0076680 | sp|Q8S3D5|LRL2_ARATH | 36.154 | 130 | 81 | 1 | 189 | 316 | 136 | 265 | 3.29e-17 | 84.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0076680 | G7IEF8 | 91.692 | 325 | 26 | 1 | 1 | 324 | 1 | 325 | 0.0 | 612 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0076680 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0076680 | MtrunA17_Chr1g0185741 | 90.759 | 303 | 27 | 1 | 1 | 302 | 1 | 303 | 0.0 | 566 |
| Msa0076680 | MtrunA17_Chr4g0074161 | 35.811 | 148 | 75 | 3 | 189 | 316 | 212 | 359 | 1.04e-17 | 83.2 |
| Msa0076680 | MtrunA17_Chr1g0190731 | 33.577 | 137 | 79 | 1 | 189 | 313 | 199 | 335 | 1.23e-15 | 76.6 |
| Msa0076680 | MtrunA17_Chr1g0184841 | 33.333 | 117 | 66 | 1 | 212 | 316 | 149 | 265 | 1.04e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0076680 | AT5G64980.1 | 44.715 | 123 | 66 | 2 | 190 | 310 | 218 | 340 | 1.55e-22 | 96.7 |
| Msa0076680 | AT5G64980.2 | 44.715 | 123 | 66 | 2 | 190 | 310 | 218 | 340 | 1.55e-22 | 96.7 |
| Msa0076680 | AT2G24260.2 | 34.132 | 167 | 83 | 5 | 169 | 316 | 23 | 181 | 2.99e-18 | 83.2 |
| Msa0076680 | AT4G30980.1 | 36.154 | 130 | 81 | 1 | 189 | 316 | 136 | 265 | 3.35e-18 | 84.0 |
| Msa0076680 | AT4G30980.2 | 36.154 | 130 | 81 | 1 | 189 | 316 | 184 | 313 | 5.83e-18 | 84.0 |
| Msa0076680 | AT2G24260.1 | 34.132 | 167 | 83 | 5 | 169 | 316 | 126 | 284 | 1.20e-17 | 82.8 |
| Msa0076680 | AT5G58010.1 | 33.108 | 148 | 75 | 4 | 189 | 314 | 105 | 250 | 1.62e-14 | 73.2 |
| Msa0076680 | AT1G03040.2 | 28.962 | 183 | 112 | 3 | 146 | 310 | 91 | 273 | 1.02e-12 | 68.2 |
| Msa0076680 | AT1G03040.1 | 29.630 | 189 | 110 | 4 | 145 | 310 | 90 | 278 | 1.24e-12 | 67.8 |
| Msa0076680 | AT4G02590.3 | 33.628 | 113 | 61 | 1 | 212 | 310 | 112 | 224 | 1.65e-11 | 63.9 |
| Msa0076680 | AT4G02590.2 | 33.628 | 113 | 61 | 1 | 212 | 310 | 175 | 287 | 2.13e-11 | 64.3 |
| Msa0076680 | AT4G02590.1 | 33.628 | 113 | 61 | 1 | 212 | 310 | 175 | 287 | 2.13e-11 | 64.3 |
Find 77 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGGAGCTACCTCCTGATTT+TGG | 0.143862 | 1_2:-52905915 | None:intergenic |
| CATTATGGTTGATATATATT+TGG | 0.170861 | 1_2:+52907264 | Msa0076680:three_prime_UTR |
| GATCCTGGAAAAGCTGATTT+TGG | 0.197185 | 1_2:+52905036 | Msa0076680:CDS |
| GATTCTTCAAGTCATGATTT+TGG | 0.215491 | 1_2:+52905072 | Msa0076680:CDS |
| GGAAGTGCAAAAGGCTTAAA+AGG | 0.239961 | 1_2:-52904625 | None:intergenic |
| AAACAAGGGTTAAAACTTAA+AGG | 0.276505 | 1_2:-52904707 | None:intergenic |
| ATGATTTATTCACAGGGTTA+TGG | 0.279023 | 1_2:+52907036 | Msa0076680:intron |
| TGTTTGGATTATTTCTAGTT+TGG | 0.323791 | 1_2:+52907289 | Msa0076680:three_prime_UTR |
| TGAGCCTCTTGAAGAGATAA+TGG | 0.328914 | 1_2:+52907086 | Msa0076680:CDS |
| TGATTTATTCACAGGGTTAT+GGG | 0.337574 | 1_2:+52907037 | Msa0076680:intron |
| ATATAACTCTTGAAAATCTA+TGG | 0.338045 | 1_2:+52907342 | Msa0076680:three_prime_UTR |
| TGATATATATTTGGTATGTT+TGG | 0.342554 | 1_2:+52907273 | Msa0076680:three_prime_UTR |
| TGTTCTGCTGCCTATTGCTT+TGG | 0.355110 | 1_2:+52907167 | Msa0076680:CDS |
| TGCTTATCTCCAACTGAATC+AGG | 0.357388 | 1_2:-52905834 | None:intergenic |
| TTACTTCCAGATCCAAAATC+AGG | 0.365049 | 1_2:+52905903 | Msa0076680:CDS |
| TCAGTTGTTGTAGTAGTGTT+TGG | 0.377494 | 1_2:-52904952 | None:intergenic |
| CAAATATATATCAACCATAA+TGG | 0.381821 | 1_2:-52907263 | None:intergenic |
| GAGCCTCTTGAAGAGATAAT+GGG | 0.382191 | 1_2:+52907087 | Msa0076680:CDS |
| TACTACCAAGAGTGTGATAA+TGG | 0.397730 | 1_2:-52904996 | None:intergenic |
| ACAACTGAGTATAATATGAT+TGG | 0.400574 | 1_2:+52904967 | Msa0076680:CDS |
| ATTGAAAGTTAGAGAAAGAA+AGG | 0.418864 | 1_2:-52904582 | None:intergenic |
| GGTTCAACCATTGCATAGCT+TGG | 0.429150 | 1_2:-52907203 | None:intergenic |
| AAACAACAGATTACCACATC+TGG | 0.432844 | 1_2:-52906205 | None:intergenic |
| GCTTCTCAATTTGATCATAT+AGG | 0.440344 | 1_2:+52905861 | Msa0076680:CDS |
| GGGTTATGGGCATTATATAA+AGG | 0.442119 | 1_2:+52907050 | Msa0076680:intron |
| AGTTCATCAACCAAAGCAAT+AGG | 0.445410 | 1_2:-52907177 | None:intergenic |
| GCAATTCATGTAAAGCTTTG+AGG | 0.446403 | 1_2:-52906174 | None:intergenic |
| TCCCACTTCTTCCAAAGTGT+TGG | 0.449123 | 1_2:-52904855 | None:intergenic |
| ATTATTTCTAGTTTGGCCAT+TGG | 0.449578 | 1_2:+52907296 | Msa0076680:three_prime_UTR |
| ACTTGCATGAAAAGTAAGAT+AGG | 0.451879 | 1_2:+52907440 | Msa0076680:three_prime_UTR |
| GTTAGCTAGCCTAGCTAGCT+TGG | 0.456823 | 1_2:-52907224 | None:intergenic |
| TTTCTGTGTTTAGATTTGTT+CGG | 0.468964 | 1_2:+52907390 | Msa0076680:three_prime_UTR |
| TTTGGATCTGGAAGTAAAGA+AGG | 0.473688 | 1_2:-52905897 | None:intergenic |
| CAAATTCAAAACCAACACTT+TGG | 0.479840 | 1_2:+52904844 | Msa0076680:CDS |
| CAAATGAAGGGAAGTGCAAA+AGG | 0.482349 | 1_2:-52904634 | None:intergenic |
| GGGTAGTCAAGCTTACATAT+TGG | 0.487201 | 1_2:+52906364 | Msa0076680:intron |
| AACCAACACTTTGGAAGAAG+TGG | 0.489754 | 1_2:+52904853 | Msa0076680:CDS |
| TTGGAGACATGATGAAGGAG+AGG | 0.492348 | 1_2:+52905234 | Msa0076680:CDS |
| ACTTTCACTTACCCAAATGA+AGG | 0.493624 | 1_2:-52904647 | None:intergenic |
| ATGGTTGAACCAAGCTAGCT+AGG | 0.499706 | 1_2:+52907215 | Msa0076680:CDS |
| CAACTGAGTATAATATGATT+GGG | 0.500571 | 1_2:+52904968 | Msa0076680:CDS |
| AGCAGCAGTTTCAATGATCC+TGG | 0.501372 | 1_2:+52905021 | Msa0076680:CDS |
| AAAGGCTTAAAAGGGTATCA+TGG | 0.502625 | 1_2:-52904616 | None:intergenic |
| CGGTTCTTGAATCCTTTGAT+CGG | 0.506444 | 1_2:+52907410 | Msa0076680:three_prime_UTR |
| TTCCCCATTATCTCTTCAAG+AGG | 0.517037 | 1_2:-52907090 | None:intergenic |
| CAACTTTCATATGAAAATGA+AGG | 0.525784 | 1_2:+52904790 | Msa0076680:CDS |
| AATAGCCATTATCACACTCT+TGG | 0.527667 | 1_2:+52904991 | Msa0076680:CDS |
| GATGTTCCTCAGAAACATCA+TGG | 0.529826 | 1_2:-52904822 | None:intergenic |
| AAGTTAGAGAAAGAAAGGTA+TGG | 0.549135 | 1_2:-52904577 | None:intergenic |
| AATTAACTAACCTCAGCATA+GGG | 0.551131 | 1_2:-52905295 | None:intergenic |
| TTTCACTACCAAGCTAAACA+AGG | 0.556024 | 1_2:-52904722 | None:intergenic |
| GAAGTGCAAAAGGCTTAAAA+GGG | 0.558314 | 1_2:-52904624 | None:intergenic |
| ACACAGGACTTATTTGTGAC+CGG | 0.561330 | 1_2:+52907463 | Msa0076680:three_prime_UTR |
| CTCTTTGAATATAGCAACGC+AGG | 0.564825 | 1_2:+52906134 | Msa0076680:intron |
| CAAGTCTAATAACCGATCAA+AGG | 0.572952 | 1_2:-52907422 | None:intergenic |
| TTGGAAGAAGTGGGATAGAG+TGG | 0.574092 | 1_2:+52904863 | Msa0076680:CDS |
| ATACTTGCAGATTCAAGTGA+AGG | 0.584258 | 1_2:+52906409 | Msa0076680:CDS |
| CAATTAACTAACCTCAGCAT+AGG | 0.587618 | 1_2:-52905296 | None:intergenic |
| CTTTCACTTACCCAAATGAA+GGG | 0.588016 | 1_2:-52904646 | None:intergenic |
| TTCACTACCAAGCTAAACAA+GGG | 0.589987 | 1_2:-52904721 | None:intergenic |
| GTTCCTTTGCAGGAACTAAG+TGG | 0.591768 | 1_2:+52906570 | Msa0076680:intron |
| ACATGGACACCTGATTCAGT+TGG | 0.593145 | 1_2:+52905825 | Msa0076680:CDS |
| TGTAATAGGGTCATGCAACA+TGG | 0.593241 | 1_2:+52905808 | Msa0076680:intron |
| ACCAACACTTTGGAAGAAGT+GGG | 0.607841 | 1_2:+52904854 | Msa0076680:CDS |
| AGTGTTTGGAAGATAGCATG+AGG | 0.616860 | 1_2:-52904938 | None:intergenic |
| AAGTAGCCATGATGTTTCTG+AGG | 0.620893 | 1_2:+52904816 | Msa0076680:CDS |
| GGTGGGTACGTACACATGCA+AGG | 0.624545 | 1_2:-52904524 | None:intergenic |
| AGCCTCTTGAAGAGATAATG+GGG | 0.633642 | 1_2:+52907088 | Msa0076680:CDS |
| CTTCCAGATCCAAAATCAGG+AGG | 0.643289 | 1_2:+52905906 | Msa0076680:CDS |
| TGTACCTCATGGAAAACTAG+TGG | 0.648110 | 1_2:-52906624 | None:intergenic |
| TCAAAATCTTCCCTATGCTG+AGG | 0.652824 | 1_2:+52905285 | Msa0076680:CDS |
| AACTGAACCAAGCTATGCAA+TGG | 0.660513 | 1_2:+52907196 | Msa0076680:CDS |
| CAGATTACCACATCTGGAGT+CGG | 0.663959 | 1_2:-52906199 | None:intergenic |
| TGTCAGCTACTTGAAAACAA+AGG | 0.685270 | 1_2:+52907141 | Msa0076680:CDS |
| TGAAAATCTATGGTACTCAG+AGG | 0.705901 | 1_2:+52907352 | Msa0076680:three_prime_UTR |
| TGAAAAGTAAGATAGGACAC+AGG | 0.717756 | 1_2:+52907447 | Msa0076680:three_prime_UTR |
| ATTGCTGCCGACTCCAGATG+TGG | 0.727085 | 1_2:+52906192 | Msa0076680:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTGTAATAATTTTGTAAT+AGG | + | chr1_2:52905794-52905813 | Msa0076680:intron | 10.0% |
| !!! | ATTGTAATAATTTTGTAATA+GGG | + | chr1_2:52905795-52905814 | Msa0076680:intron | 10.0% |
| !! | AATAAGCTGAAAAAAATATA+TGG | + | chr1_2:52905662-52905681 | Msa0076680:intron | 15.0% |
| !!! | GATTTAATATTAGTTTTCAA+AGG | + | chr1_2:52906230-52906249 | Msa0076680:intron | 15.0% |
| !!! | ATTTAAGTAGCTAATTTTTT+TGG | + | chr1_2:52906268-52906287 | Msa0076680:intron | 15.0% |
| !!! | TTTAAGTAGCTAATTTTTTT+GGG | + | chr1_2:52906269-52906288 | Msa0076680:intron | 15.0% |
| !! | ATTAAAATTCAGTTCATTAA+AGG | - | chr1_2:52906339-52906358 | None:intergenic | 15.0% |
| !! | AAAAAAAATTAGGATTGAAA+AGG | - | chr1_2:52906437-52906456 | None:intergenic | 15.0% |
| !!! | TCCTAATTTTTTTTTTTGAA+TGG | + | chr1_2:52906443-52906462 | Msa0076680:intron | 15.0% |
| !! | TAATATATCTACTGAAATTA+AGG | - | chr1_2:52906657-52906676 | None:intergenic | 15.0% |
| !!! | TTTCTATTATTTTAAGCTTA+AGG | - | chr1_2:52906841-52906860 | None:intergenic | 15.0% |
| !!! | TTTATTTTTATTCTCCATTA+TGG | + | chr1_2:52907249-52907268 | Msa0076680:three_prime_UTR | 15.0% |
| !!! | TATTCAACATAGTTATTTTG+AGG | - | chr1_2:52904907-52904926 | None:intergenic | 20.0% |
| !! | AAATAAGCTGAAAAAACTTA+TGG | + | chr1_2:52905594-52905613 | Msa0076680:intron | 20.0% |
| !! | TTACAATAACACTATAAGTT+AGG | - | chr1_2:52905782-52905801 | None:intergenic | 20.0% |
| !! | ATATATGAGCTACTTAAATT+TGG | - | chr1_2:52906296-52906315 | None:intergenic | 20.0% |
| !! | GCCATTCAAAAAAAAAAATT+AGG | - | chr1_2:52906447-52906466 | None:intergenic | 20.0% |
| !!! | TAGTTTTTTTCTTCTTTATC+CGG | + | chr1_2:52906492-52906511 | Msa0076680:intron | 20.0% |
| !!! | TGTTTTTTAGTAACAAAGTT+CGG | - | chr1_2:52906905-52906924 | None:intergenic | 20.0% |
| !!! | TTTGTTATGATTTATTCACA+GGG | + | chr1_2:52907030-52907049 | Msa0076680:intron | 20.0% |
| !! | CAAATATATATCAACCATAA+TGG | - | chr1_2:52907266-52907285 | None:intergenic | 20.0% |
| !!! | CATTATGGTTGATATATATT+TGG | + | chr1_2:52907264-52907283 | Msa0076680:three_prime_UTR | 20.0% |
| !! | TGATATATATTTGGTATGTT+TGG | + | chr1_2:52907273-52907292 | Msa0076680:three_prime_UTR | 20.0% |
| !! | ATATAACTCTTGAAAATCTA+TGG | + | chr1_2:52907342-52907361 | Msa0076680:three_prime_UTR | 20.0% |
| ! | ATTGAAAGTTAGAGAAAGAA+AGG | - | chr1_2:52904585-52904604 | None:intergenic | 25.0% |
| ! | AAACAAGGGTTAAAACTTAA+AGG | - | chr1_2:52904710-52904729 | None:intergenic | 25.0% |
| ! | CAACTTTCATATGAAAATGA+AGG | + | chr1_2:52904790-52904809 | Msa0076680:CDS | 25.0% |
| !!! | TAGTTATTTTGAGGTAGTTT+TGG | - | chr1_2:52904898-52904917 | None:intergenic | 25.0% |
| ! | ACAACTGAGTATAATATGAT+TGG | + | chr1_2:52904967-52904986 | Msa0076680:CDS | 25.0% |
| ! | CAACTGAGTATAATATGATT+GGG | + | chr1_2:52904968-52904987 | Msa0076680:CDS | 25.0% |
| !! | ATGTTTTGTAAATTTATGCG+AGG | + | chr1_2:52905155-52905174 | Msa0076680:intron | 25.0% |
| !!! | GTTGTTTTCATAAGTTATTG+TGG | + | chr1_2:52905491-52905510 | Msa0076680:intron | 25.0% |
| ! | AAGTTATCTTGAAGATCTAA+TGG | + | chr1_2:52905571-52905590 | Msa0076680:intron | 25.0% |
| ! | CATCTCTGATAAAATCATAA+GGG | + | chr1_2:52905992-52906011 | Msa0076680:intron | 25.0% |
| !! | GTATATATGCATTTTGAATG+TGG | - | chr1_2:52906018-52906037 | None:intergenic | 25.0% |
| !!! | TGAACTGAATTTTAATTTGC+AGG | + | chr1_2:52906343-52906362 | Msa0076680:intron | 25.0% |
| !!! | GAACTGAATTTTAATTTGCA+GGG | + | chr1_2:52906344-52906363 | Msa0076680:intron | 25.0% |
| !!! | AGTTTTTTTCTTCTTTATCC+GGG | + | chr1_2:52906493-52906512 | Msa0076680:intron | 25.0% |
| ! | TACTCAAGAAATTATTTGCA+TGG | - | chr1_2:52906724-52906743 | None:intergenic | 25.0% |
| !! | TAACTTGTATTTACATGCAA+CGG | - | chr1_2:52906807-52906826 | None:intergenic | 25.0% |
| !!! | GTTTGTTATGATTTATTCAC+AGG | + | chr1_2:52907029-52907048 | Msa0076680:intron | 25.0% |
| !!! | TGTTTGGATTATTTCTAGTT+TGG | + | chr1_2:52907289-52907308 | Msa0076680:three_prime_UTR | 25.0% |
| !! | TTTCTGTGTTTAGATTTGTT+CGG | + | chr1_2:52907390-52907409 | Msa0076680:three_prime_UTR | 25.0% |
| !!! | TCTGTTTTTTGTTTGTTGGT+GGG | - | chr1_2:52904544-52904563 | None:intergenic | 30.0% |
| !!! | TTGCTCTGTTTTTTGTTTGT+TGG | - | chr1_2:52904548-52904567 | None:intergenic | 30.0% |
| AAGTTAGAGAAAGAAAGGTA+TGG | - | chr1_2:52904580-52904599 | None:intergenic | 30.0% | |
| GAGTAATGAAAAAGTGGTAA+AGG | - | chr1_2:52904678-52904697 | None:intergenic | 30.0% | |
| GAAGTTGAGTAATGAAAAAG+TGG | - | chr1_2:52904684-52904703 | None:intergenic | 30.0% | |
| !! | CTTGGTAGTGAAAACAAAAA+TGG | + | chr1_2:52904732-52904751 | Msa0076680:exon | 30.0% |
| GTAGTGAAAACAAAAATGGA+AGG | + | chr1_2:52904736-52904755 | Msa0076680:exon | 30.0% | |
| CAAATTCAAAACCAACACTT+TGG | + | chr1_2:52904844-52904863 | Msa0076680:CDS | 30.0% | |
| ! | GATTCTTCAAGTCATGATTT+TGG | + | chr1_2:52905072-52905091 | Msa0076680:CDS | 30.0% |
| AGGAAGGTAAAGTTAATGAA+TGG | + | chr1_2:52905099-52905118 | Msa0076680:intron | 30.0% | |
| AATTAACTAACCTCAGCATA+GGG | - | chr1_2:52905298-52905317 | None:intergenic | 30.0% | |
| TATGCAAACGTGAAACTATT+TGG | - | chr1_2:52905718-52905737 | None:intergenic | 30.0% | |
| GCTTCTCAATTTGATCATAT+AGG | + | chr1_2:52905861-52905880 | Msa0076680:CDS | 30.0% | |
| !! | TTTCTCACTTTTCTGTTTTG+TGG | - | chr1_2:52905937-52905956 | None:intergenic | 30.0% |
| ! | CCTTATGATTTTATCAGAGA+TGG | - | chr1_2:52905994-52906013 | None:intergenic | 30.0% |
| CCATCTCTGATAAAATCATA+AGG | + | chr1_2:52905991-52906010 | Msa0076680:intron | 30.0% | |
| GATTGTTAACTAGTTGACAA+GGG | - | chr1_2:52906069-52906088 | None:intergenic | 30.0% | |
| AGATTGTTAACTAGTTGACA+AGG | - | chr1_2:52906070-52906089 | None:intergenic | 30.0% | |
| GCAAAGTTGTGTTAATGAAT+TGG | - | chr1_2:52906097-52906116 | None:intergenic | 30.0% | |
| ! | TGCTATATTCAAAGAGTACA+CGG | - | chr1_2:52906130-52906149 | None:intergenic | 30.0% |
| AAGAAATTATTTGCATGGAG+CGG | - | chr1_2:52906719-52906738 | None:intergenic | 30.0% | |
| !! | TTGTTATTTGTACAGCTCAT+AGG | + | chr1_2:52906764-52906783 | Msa0076680:intron | 30.0% |
| ! | GTATCTTAACTCTTTTGAAC+CGG | + | chr1_2:52906952-52906971 | Msa0076680:intron | 30.0% |
| ! | TATCTTAACTCTTTTGAACC+GGG | + | chr1_2:52906953-52906972 | Msa0076680:intron | 30.0% |
| ATGATTTATTCACAGGGTTA+TGG | + | chr1_2:52907036-52907055 | Msa0076680:intron | 30.0% | |
| TGATTTATTCACAGGGTTAT+GGG | + | chr1_2:52907037-52907056 | Msa0076680:intron | 30.0% | |
| !! | ATTATTTCTAGTTTGGCCAT+TGG | + | chr1_2:52907296-52907315 | Msa0076680:three_prime_UTR | 30.0% |
| AGAAAAGAAAAAGTAGCCAA+TGG | - | chr1_2:52907315-52907334 | None:intergenic | 30.0% | |
| ACTTGCATGAAAAGTAAGAT+AGG | + | chr1_2:52907440-52907459 | Msa0076680:three_prime_UTR | 30.0% | |
| !!! | CTCTGTTTTTTGTTTGTTGG+TGG | - | chr1_2:52904545-52904564 | None:intergenic | 35.0% |
| !! | AAAGGCTTAAAAGGGTATCA+TGG | - | chr1_2:52904619-52904638 | None:intergenic | 35.0% |
| GAAGTGCAAAAGGCTTAAAA+GGG | - | chr1_2:52904627-52904646 | None:intergenic | 35.0% | |
| ! | TTTTGCACTTCCCTTCATTT+GGG | + | chr1_2:52904636-52904655 | Msa0076680:five_prime_UTR | 35.0% |
| CTTTCACTTACCCAAATGAA+GGG | - | chr1_2:52904649-52904668 | None:intergenic | 35.0% | |
| ACTTTCACTTACCCAAATGA+AGG | - | chr1_2:52904650-52904669 | None:intergenic | 35.0% | |
| !! | GTTTTAACCCTTGTTTAGCT+TGG | + | chr1_2:52904714-52904733 | Msa0076680:five_prime_UTR | 35.0% |
| TTCACTACCAAGCTAAACAA+GGG | - | chr1_2:52904724-52904743 | None:intergenic | 35.0% | |
| TTTCACTACCAAGCTAAACA+AGG | - | chr1_2:52904725-52904744 | None:intergenic | 35.0% | |
| TCAGTTGTTGTAGTAGTGTT+TGG | - | chr1_2:52904955-52904974 | None:intergenic | 35.0% | |
| AATAGCCATTATCACACTCT+TGG | + | chr1_2:52904991-52905010 | Msa0076680:CDS | 35.0% | |
| ! | TACTACCAAGAGTGTGATAA+TGG | - | chr1_2:52904999-52905018 | None:intergenic | 35.0% |
| ! | AAACCAAAATCAGCTTTTCC+AGG | - | chr1_2:52905042-52905061 | None:intergenic | 35.0% |
| !!! | CAAGTCATGATTTTGGTGTT+AGG | + | chr1_2:52905079-52905098 | Msa0076680:CDS | 35.0% |
| !!! | TCATGATTTTGGTGTTAGGA+AGG | + | chr1_2:52905083-52905102 | Msa0076680:CDS | 35.0% |
| !!! | GTGTTTTGTTTTCAGCATGT+AGG | + | chr1_2:52905208-52905227 | Msa0076680:intron | 35.0% |
| ! | GTTTTCAGCATGTAGGATTT+TGG | + | chr1_2:52905215-52905234 | Msa0076680:intron | 35.0% |
| CAATTAACTAACCTCAGCAT+AGG | - | chr1_2:52905299-52905318 | None:intergenic | 35.0% | |
| ! | ATGCTGAGGTTAGTTAATTG+AGG | + | chr1_2:52905299-52905318 | Msa0076680:intron | 35.0% |
| GCTACACATAAGCACTTAAA+TGG | - | chr1_2:52905416-52905435 | None:intergenic | 35.0% | |
| AAGCTCTCTTCAAGAGTTTA+TGG | + | chr1_2:52905638-52905657 | Msa0076680:intron | 35.0% | |
| TTTGGATCTGGAAGTAAAGA+AGG | - | chr1_2:52905900-52905919 | None:intergenic | 35.0% | |
| TTACTTCCAGATCCAAAATC+AGG | + | chr1_2:52905903-52905922 | Msa0076680:CDS | 35.0% | |
| ! | TATTCAAAGAGTACACGGTA+AGG | - | chr1_2:52906125-52906144 | None:intergenic | 35.0% |
| GCAATTCATGTAAAGCTTTG+AGG | - | chr1_2:52906177-52906196 | None:intergenic | 35.0% | |
| AAACAACAGATTACCACATC+TGG | - | chr1_2:52906208-52906227 | None:intergenic | 35.0% | |
| ATACTTGCAGATTCAAGTGA+AGG | + | chr1_2:52906409-52906428 | Msa0076680:CDS | 35.0% | |
| AAAGAAAGTTGTTCCTTTGC+AGG | + | chr1_2:52906560-52906579 | Msa0076680:intron | 35.0% | |
| !!! | TATACCACTAGTTTTCCATG+AGG | + | chr1_2:52906620-52906639 | Msa0076680:CDS | 35.0% |
| TTATGTTAGAACAACAAGCC+CGG | - | chr1_2:52906974-52906993 | None:intergenic | 35.0% | |
| AGCAGTGTCAAATTCATTGA+CGG | + | chr1_2:52907002-52907021 | Msa0076680:intron | 35.0% | |
| GGGTTATGGGCATTATATAA+AGG | + | chr1_2:52907050-52907069 | Msa0076680:intron | 35.0% | |
| TGTCAGCTACTTGAAAACAA+AGG | + | chr1_2:52907141-52907160 | Msa0076680:CDS | 35.0% | |
| AGTTCATCAACCAAAGCAAT+AGG | - | chr1_2:52907180-52907199 | None:intergenic | 35.0% | |
| TGAAAATCTATGGTACTCAG+AGG | + | chr1_2:52907352-52907371 | Msa0076680:three_prime_UTR | 35.0% | |
| CAAGTCTAATAACCGATCAA+AGG | - | chr1_2:52907425-52907444 | None:intergenic | 35.0% | |
| TGAAAAGTAAGATAGGACAC+AGG | + | chr1_2:52907447-52907466 | Msa0076680:three_prime_UTR | 35.0% | |
| ! | GGAAGTGCAAAAGGCTTAAA+AGG | - | chr1_2:52904628-52904647 | None:intergenic | 40.0% |
| ! | CAAATGAAGGGAAGTGCAAA+AGG | - | chr1_2:52904637-52904656 | None:intergenic | 40.0% |
| ! | CTTTTGCACTTCCCTTCATT+TGG | + | chr1_2:52904635-52904654 | Msa0076680:five_prime_UTR | 40.0% |
| ! | AAGTAGCCATGATGTTTCTG+AGG | + | chr1_2:52904816-52904835 | Msa0076680:CDS | 40.0% |
| GATGTTCCTCAGAAACATCA+TGG | - | chr1_2:52904825-52904844 | None:intergenic | 40.0% | |
| ! | AACCAACACTTTGGAAGAAG+TGG | + | chr1_2:52904853-52904872 | Msa0076680:CDS | 40.0% |
| ! | ACCAACACTTTGGAAGAAGT+GGG | + | chr1_2:52904854-52904873 | Msa0076680:CDS | 40.0% |
| AGTGTTTGGAAGATAGCATG+AGG | - | chr1_2:52904941-52904960 | None:intergenic | 40.0% | |
| !! | GATCCTGGAAAAGCTGATTT+TGG | + | chr1_2:52905036-52905055 | Msa0076680:CDS | 40.0% |
| !! | GGATTTTGGAGACATGATGA+AGG | + | chr1_2:52905229-52905248 | Msa0076680:CDS | 40.0% |
| TCAAAATCTTCCCTATGCTG+AGG | + | chr1_2:52905285-52905304 | Msa0076680:CDS | 40.0% | |
| TGTAATAGGGTCATGCAACA+TGG | + | chr1_2:52905808-52905827 | Msa0076680:intron | 40.0% | |
| TGCTTATCTCCAACTGAATC+AGG | - | chr1_2:52905837-52905856 | None:intergenic | 40.0% | |
| CTCTTTGAATATAGCAACGC+AGG | + | chr1_2:52906134-52906153 | Msa0076680:intron | 40.0% | |
| GGGTAGTCAAGCTTACATAT+TGG | + | chr1_2:52906364-52906383 | Msa0076680:intron | 40.0% | |
| TTGATCACAACGTTCAAACC+CGG | - | chr1_2:52906514-52906533 | None:intergenic | 40.0% | |
| TGTACCTCATGGAAAACTAG+TGG | - | chr1_2:52906627-52906646 | None:intergenic | 40.0% | |
| AAGGAAAGATGTGTACCTCA+TGG | - | chr1_2:52906638-52906657 | None:intergenic | 40.0% | |
| TATTTGCATGGAGCGGAATT+TGG | - | chr1_2:52906712-52906731 | None:intergenic | 40.0% | |
| TGAGCCTCTTGAAGAGATAA+TGG | + | chr1_2:52907086-52907105 | Msa0076680:CDS | 40.0% | |
| GAGCCTCTTGAAGAGATAAT+GGG | + | chr1_2:52907087-52907106 | Msa0076680:CDS | 40.0% | |
| AGCCTCTTGAAGAGATAATG+GGG | + | chr1_2:52907088-52907107 | Msa0076680:CDS | 40.0% | |
| TTCCCCATTATCTCTTCAAG+AGG | - | chr1_2:52907093-52907112 | None:intergenic | 40.0% | |
| AACTGAACCAAGCTATGCAA+TGG | + | chr1_2:52907196-52907215 | Msa0076680:CDS | 40.0% | |
| CGGTTCTTGAATCCTTTGAT+CGG | + | chr1_2:52907410-52907429 | Msa0076680:three_prime_UTR | 40.0% | |
| TCCCACTTCTTCCAAAGTGT+TGG | - | chr1_2:52904858-52904877 | None:intergenic | 45.0% | |
| TTGGAAGAAGTGGGATAGAG+TGG | + | chr1_2:52904863-52904882 | Msa0076680:CDS | 45.0% | |
| AGCAGCAGTTTCAATGATCC+TGG | + | chr1_2:52905021-52905040 | Msa0076680:CDS | 45.0% | |
| TTGGAGACATGATGAAGGAG+AGG | + | chr1_2:52905234-52905253 | Msa0076680:CDS | 45.0% | |
| ACATGGACACCTGATTCAGT+TGG | + | chr1_2:52905825-52905844 | Msa0076680:CDS | 45.0% | |
| CTTCCAGATCCAAAATCAGG+AGG | + | chr1_2:52905906-52905925 | Msa0076680:CDS | 45.0% | |
| ! | CTACCTCCTGATTTTGGATC+TGG | - | chr1_2:52905912-52905931 | None:intergenic | 45.0% |
| ! | CAGATTACCACATCTGGAGT+CGG | - | chr1_2:52906202-52906221 | None:intergenic | 45.0% |
| GTTCCTTTGCAGGAACTAAG+TGG | + | chr1_2:52906570-52906589 | Msa0076680:intron | 45.0% | |
| CTTCCACTTAGTTCCTGCAA+AGG | - | chr1_2:52906576-52906595 | None:intergenic | 45.0% | |
| TGTTCTGCTGCCTATTGCTT+TGG | + | chr1_2:52907167-52907186 | Msa0076680:CDS | 45.0% | |
| GGTTCAACCATTGCATAGCT+TGG | - | chr1_2:52907206-52907225 | None:intergenic | 45.0% | |
| ATGGTTGAACCAAGCTAGCT+AGG | + | chr1_2:52907215-52907234 | Msa0076680:CDS | 45.0% | |
| ! | GTGGAGCTACCTCCTGATTT+TGG | - | chr1_2:52905918-52905937 | None:intergenic | 50.0% |
| GCCACTCTGCAGTTAGATGT+AGG | + | chr1_2:52906870-52906889 | Msa0076680:intron | 50.0% | |
| GCCTACATCTAACTGCAGAG+TGG | - | chr1_2:52906874-52906893 | None:intergenic | 50.0% | |
| ! | GTTAGCTAGCCTAGCTAGCT+TGG | - | chr1_2:52907227-52907246 | None:intergenic | 50.0% |
| GGTGGGTACGTACACATGCA+AGG | - | chr1_2:52904527-52904546 | None:intergenic | 55.0% | |
| !! | ATTGCTGCCGACTCCAGATG+TGG | + | chr1_2:52906192-52906211 | Msa0076680:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 52904519 | 52907485 | 52904519 | ID=Msa0076680;Name=Msa0076680 |
| chr1_2 | mRNA | 52904519 | 52907485 | 52904519 | ID=Msa0076680-mRNA-1;Parent=Msa0076680;Name=Msa0076680-mRNA-1;_AED=0.01;_eAED=0.01;_QI=232|1|1|1|1|1|7|249|324 |
| chr1_2 | exon | 52904519 | 52905104 | 52904519 | ID=Msa0076680-mRNA-1:exon:16350;Parent=Msa0076680-mRNA-1 |
| chr1_2 | exon | 52905223 | 52905306 | 52905223 | ID=Msa0076680-mRNA-1:exon:16351;Parent=Msa0076680-mRNA-1 |
| chr1_2 | exon | 52905816 | 52905974 | 52905816 | ID=Msa0076680-mRNA-1:exon:16352;Parent=Msa0076680-mRNA-1 |
| chr1_2 | exon | 52906148 | 52906213 | 52906148 | ID=Msa0076680-mRNA-1:exon:16353;Parent=Msa0076680-mRNA-1 |
| chr1_2 | exon | 52906365 | 52906430 | 52906365 | ID=Msa0076680-mRNA-1:exon:16354;Parent=Msa0076680-mRNA-1 |
| chr1_2 | exon | 52906582 | 52906641 | 52906582 | ID=Msa0076680-mRNA-1:exon:16355;Parent=Msa0076680-mRNA-1 |
| chr1_2 | exon | 52907051 | 52907485 | 52907051 | ID=Msa0076680-mRNA-1:exon:16356;Parent=Msa0076680-mRNA-1 |
| chr1_2 | five_prime_UTR | 52904519 | 52904750 | 52904519 | ID=Msa0076680-mRNA-1:five_prime_utr;Parent=Msa0076680-mRNA-1 |
| chr1_2 | CDS | 52904751 | 52905104 | 52904751 | ID=Msa0076680-mRNA-1:cds;Parent=Msa0076680-mRNA-1 |
| chr1_2 | CDS | 52905223 | 52905306 | 52905223 | ID=Msa0076680-mRNA-1:cds;Parent=Msa0076680-mRNA-1 |
| chr1_2 | CDS | 52905816 | 52905974 | 52905816 | ID=Msa0076680-mRNA-1:cds;Parent=Msa0076680-mRNA-1 |
| chr1_2 | CDS | 52906148 | 52906213 | 52906148 | ID=Msa0076680-mRNA-1:cds;Parent=Msa0076680-mRNA-1 |
| chr1_2 | CDS | 52906365 | 52906430 | 52906365 | ID=Msa0076680-mRNA-1:cds;Parent=Msa0076680-mRNA-1 |
| chr1_2 | CDS | 52906582 | 52906641 | 52906582 | ID=Msa0076680-mRNA-1:cds;Parent=Msa0076680-mRNA-1 |
| chr1_2 | CDS | 52907051 | 52907236 | 52907051 | ID=Msa0076680-mRNA-1:cds;Parent=Msa0076680-mRNA-1 |
| chr1_2 | three_prime_UTR | 52907237 | 52907485 | 52907237 | ID=Msa0076680-mRNA-1:three_prime_utr;Parent=Msa0076680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
