AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0076970

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0076970 MtrunA17_Chr1g0186061 96.875 256 8 0 1 256 1 256 0.0 513
Msa0076970 MtrunA17_Chr1g0168661 64.394 264 85 5 2 264 3 258 3.38e-108 313
Msa0076970 MtrunA17_Chr1g0209661 65.455 110 38 0 16 125 23 132 7.64e-52 171
Msa0076970 MtrunA17_Chr1g0194291 68.571 105 33 0 21 125 22 126 2.01e-51 169
Msa0076970 MtrunA17_Chr7g0228231 67.619 105 34 0 21 125 15 119 8.32e-51 165
Msa0076970 MtrunA17_Chr6g0450101 66.667 105 35 0 21 125 15 119 2.76e-50 164
Msa0076970 MtrunA17_Chr1g0194301 65.714 105 36 0 21 125 34 138 2.89e-50 166
Msa0076970 MtrunA17_Chr4g0039971 62.037 108 41 0 16 123 9 116 2.59e-47 160
Msa0076970 MtrunA17_Chr2g0327821 59.821 112 45 0 15 126 1 112 6.04e-47 156
Msa0076970 MtrunA17_Chr5g0434571 45.503 189 84 5 21 197 49 230 7.70e-47 159
Msa0076970 MtrunA17_Chr3g0131121 62.727 110 41 0 14 123 6 115 1.67e-46 157
Msa0076970 MtrunA17_Chr3g0115821 61.111 108 42 0 16 123 8 115 3.05e-46 157
Msa0076970 MtrunA17_Chr4g0030881 61.818 110 35 1 21 123 8 117 3.16e-46 155
Msa0076970 MtrunA17_Chr7g0275911 63.810 105 38 0 22 126 14 118 5.83e-46 154
Msa0076970 MtrunA17_Chr4g0057031 66.019 103 35 0 21 123 13 115 6.16e-46 155
Msa0076970 MtrunA17_Chr8g0346561 66.667 102 34 0 22 123 14 115 6.92e-46 155
Msa0076970 MtrunA17_Chr4g0037141 40.625 192 98 4 14 205 6 181 1.68e-45 154
Msa0076970 MtrunA17_Chr4g0070641 62.857 105 39 0 22 126 14 118 2.43e-45 150
Msa0076970 MtrunA17_Chr4g0070611 62.857 105 39 0 22 126 14 118 3.04e-45 154
Msa0076970 MtrunA17_Chr2g0293911 67.619 105 34 0 21 125 25 129 1.13e-44 153
Msa0076970 MtrunA17_Chr5g0395281 56.481 108 47 0 16 123 8 115 1.16e-44 152
Msa0076970 MtrunA17_Chr4g0068061 64.423 104 37 0 21 124 13 116 4.05e-44 152
Msa0076970 MtrunA17_Chr1g0187761 57.522 113 48 0 21 133 13 125 5.40e-44 149
Msa0076970 MtrunA17_Chr4g0068921 65.714 105 36 0 21 125 25 129 5.58e-44 147
Msa0076970 MtrunA17_Chr7g0274581 58.095 105 44 0 21 125 13 117 6.92e-44 147
Msa0076970 MtrunA17_Chr3g0110351 62.857 105 39 0 21 125 13 117 7.49e-44 150
Msa0076970 MtrunA17_Chr1g0193371 60.177 113 45 0 13 125 5 117 8.41e-44 152
Msa0076970 MtrunA17_Chr7g0217741 64.078 103 37 0 21 123 13 115 8.73e-44 150
Msa0076970 MtrunA17_Chr3g0121241 63.208 106 39 0 21 126 43 148 1.25e-43 150
Msa0076970 MtrunA17_Chr5g0410961 62.136 103 39 0 21 123 13 115 1.79e-43 150
Msa0076970 MtrunA17_Chr2g0328771 51.079 139 60 1 21 151 21 159 1.95e-43 149
Msa0076970 MtrunA17_Chr1g0180391 38.565 223 120 6 21 237 20 231 2.08e-43 147
Msa0076970 MtrunA17_Chr5g0435101 59.804 102 41 0 22 123 13 114 2.24e-43 146
Msa0076970 MtrunA17_Chr2g0281071 60.194 103 41 0 21 123 14 116 3.52e-43 149
Msa0076970 MtrunA17_Chr8g0349261 61.538 104 39 1 21 123 14 117 3.74e-43 148
Msa0076970 MtrunA17_Chr8g0385321 60.000 110 44 0 14 123 6 115 5.79e-43 148
Msa0076970 MtrunA17_Chr1g0203411 58.095 105 44 0 21 125 13 117 6.83e-43 147
Msa0076970 MtrunA17_Chr7g0261281 54.400 125 53 2 21 145 13 133 7.35e-43 147
Msa0076970 MtrunA17_Chr3g0117091 48.551 138 69 1 19 156 11 146 9.59e-43 149
Msa0076970 MtrunA17_Chr3g0080861 58.261 115 48 0 11 125 28 142 1.51e-42 152
Msa0076970 MtrunA17_Chr2g0323411 60.194 103 41 0 21 123 13 115 1.61e-42 147
Msa0076970 MtrunA17_Chr1g0211161 60.000 105 42 0 19 123 12 116 2.87e-42 144
Msa0076970 MtrunA17_Chr3g0099131 61.165 103 40 0 21 123 42 144 3.51e-42 151
Msa0076970 MtrunA17_Chr4g0048511 59.223 103 42 0 21 123 14 116 5.02e-42 147
Msa0076970 MtrunA17_Chr1g0167691 58.252 103 43 0 21 123 13 115 6.06e-42 144
Msa0076970 MtrunA17_Chr8g0342541 55.357 112 50 0 13 124 5 116 6.87e-42 146
Msa0076970 MtrunA17_Chr1g0167661 50.781 128 61 1 21 148 13 138 1.30e-41 143
Msa0076970 MtrunA17_Chr4g0022931 48.592 142 72 1 21 161 14 155 1.59e-41 143
Msa0076970 MtrunA17_Chr2g0330041 55.856 111 49 0 13 123 5 115 1.82e-41 146
Msa0076970 MtrunA17_Chr7g0228891 47.403 154 75 2 21 171 13 163 1.97e-41 143
Msa0076970 MtrunA17_Chr8g0342521 56.757 111 48 0 13 123 5 115 2.32e-41 145
Msa0076970 MtrunA17_Chr8g0354661 60.952 105 41 0 21 125 38 142 2.57e-41 149
Msa0076970 MtrunA17_Chr4g0044421 59.804 102 41 0 22 123 14 115 2.62e-41 140
Msa0076970 MtrunA17_Chr4g0042671 62.136 103 39 0 21 123 13 115 2.69e-41 146
Msa0076970 MtrunA17_Chr1g0203441 55.833 120 50 1 21 140 14 130 3.82e-41 142
Msa0076970 MtrunA17_Chr7g0271241 62.500 104 39 0 13 116 5 108 4.46e-41 145
Msa0076970 MtrunA17_Chr6g0453471 61.165 103 40 0 21 123 13 115 4.62e-41 144
Msa0076970 MtrunA17_Chr1g0193801 35.600 250 134 3 13 262 5 227 6.12e-41 145
Msa0076970 MtrunA17_Chr2g0309911 53.982 113 52 0 11 123 2 114 1.00e-40 142
Msa0076970 MtrunA17_Chr6g0470971 56.881 109 47 0 15 123 9 117 1.01e-40 142
Msa0076970 MtrunA17_Chr3g0092401 43.671 158 87 1 21 176 14 171 1.01e-40 142
Msa0076970 MtrunA17_Chr4g0022881 58.095 105 44 0 21 125 13 117 1.03e-40 140
Msa0076970 MtrunA17_Chr1g0154031 59.048 105 43 0 21 125 77 181 1.52e-40 144
Msa0076970 MtrunA17_Chr7g0270891 56.637 113 49 0 13 125 5 117 2.01e-40 143
Msa0076970 MtrunA17_Chr2g0323351 47.651 149 72 3 21 165 13 159 2.11e-40 140
Msa0076970 MtrunA17_Chr4g0022901 59.223 103 42 0 21 123 14 116 3.91e-40 140
Msa0076970 MtrunA17_Chr8g0343831 58.333 108 44 1 22 128 10 117 5.22e-40 139
Msa0076970 MtrunA17_Chr4g0032401 58.559 111 46 0 18 128 15 125 5.37e-40 141
Msa0076970 MtrunA17_Chr4g0060721 45.033 151 80 1 21 168 14 164 9.31e-40 140
Msa0076970 MtrunA17_Chr1g0194951 59.223 103 42 0 21 123 13 115 1.00e-39 141
Msa0076970 MtrunA17_Chr7g0217221 58.095 105 44 0 21 125 13 117 1.14e-39 139
Msa0076970 MtrunA17_Chr3g0088461 54.955 111 50 0 15 125 17 127 1.28e-39 140
Msa0076970 MtrunA17_Chr4g0058631 59.048 105 43 0 19 123 11 115 2.03e-39 140
Msa0076970 MtrunA17_Chr8g0387421 53.982 113 52 0 13 125 5 117 4.05e-39 138
Msa0076970 MtrunA17_Chr8g0342481 54.464 112 50 1 13 123 5 116 5.65e-39 140
Msa0076970 MtrunA17_Chr7g0254411 50.400 125 56 1 21 139 13 137 7.47e-39 138
Msa0076970 MtrunA17_Chr1g0151941 52.294 109 51 1 16 123 8 116 7.80e-39 136
Msa0076970 MtrunA17_Chr4g0055981 52.212 113 54 0 22 134 57 169 1.01e-38 135
Msa0076970 MtrunA17_Chr4g0022911 56.311 103 45 0 21 123 14 116 2.21e-38 135
Msa0076970 MtrunA17_Chr4g0022891 40.645 155 87 2 21 170 13 167 5.79e-38 133
Msa0076970 MtrunA17_Chr5g0397231 54.717 106 48 0 13 118 5 110 9.48e-38 135
Msa0076970 MtrunA17_Chr3g0103281 54.545 110 50 0 14 123 6 115 1.51e-37 134
Msa0076970 MtrunA17_Chr6g0452271 44.654 159 73 3 21 164 13 171 2.50e-37 134
Msa0076970 MtrunA17_Chr7g0269831 63.462 104 38 0 21 124 13 116 4.03e-37 134
Msa0076970 MtrunA17_Chr5g0417821 57.282 103 44 0 21 123 8 110 5.49e-37 132
Msa0076970 MtrunA17_Chr2g0322521 61.165 103 40 0 21 123 30 132 5.74e-37 134
Msa0076970 MtrunA17_Chr6g0453211 57.576 99 42 0 21 119 13 111 1.32e-36 132
Msa0076970 MtrunA17_Chr2g0327351 59.596 99 39 1 21 118 13 111 1.91e-36 131
Msa0076970 MtrunA17_Chr1g0192411 55.140 107 48 0 19 125 11 117 2.14e-36 133
Msa0076970 MtrunA17_Chr1g0152011 52.500 120 54 2 21 137 13 132 2.32e-36 132
Msa0076970 MtrunA17_Chr4g0028311 55.769 104 45 1 21 123 13 116 9.98e-36 129
Msa0076970 MtrunA17_Chr7g0240821 46.923 130 65 1 25 154 6 131 1.21e-35 127
Msa0076970 MtrunA17_Chr2g0311221 56.566 99 43 0 21 119 15 113 1.22e-35 129
Msa0076970 MtrunA17_Chr3g0135311 55.769 104 45 1 21 123 13 116 2.62e-35 129
Msa0076970 MtrunA17_Chr7g0264641 54.808 104 46 1 21 123 13 116 5.43e-35 126
Msa0076970 MtrunA17_Chr5g0434931 32.203 236 145 3 21 241 36 271 8.36e-35 126
Msa0076970 MtrunA17_Chr5g0434911 32.245 245 145 5 21 261 22 249 2.12e-34 125
Msa0076970 MtrunA17_Chr5g0400821 45.255 137 71 2 21 156 13 146 2.28e-34 125
Msa0076970 MtrunA17_Chr4g0054391 54.639 97 43 1 21 116 13 109 4.46e-33 122
Msa0076970 MtrunA17_Chr5g0434831 53.153 111 51 1 15 124 1 111 4.49e-33 119
Msa0076970 MtrunA17_Chr3g0099141 58.140 86 36 0 16 101 36 121 8.40e-33 117
Msa0076970 MtrunA17_Chr8g0360111 54.000 100 46 0 21 120 26 125 1.03e-32 120
Msa0076970 MtrunA17_Chr7g0220341 34.043 235 140 7 21 250 26 250 1.15e-32 120
Msa0076970 MtrunA17_Chr4g0072751 54.545 99 44 1 21 118 13 111 1.24e-32 122
Msa0076970 MtrunA17_Chr7g0228991 54.808 104 47 0 21 124 30 133 1.32e-32 120
Msa0076970 MtrunA17_Chr8g0334881 50.962 104 50 1 16 118 6 109 1.58e-32 121
Msa0076970 MtrunA17_Chr5g0440781 50.485 103 50 1 21 122 13 115 1.74e-32 117
Msa0076970 MtrunA17_Chr4g0013361 42.537 134 72 2 21 149 11 144 4.01e-32 119
Msa0076970 MtrunA17_Chr5g0440761 50.000 106 52 1 21 125 13 118 5.34e-32 118
Msa0076970 MtrunA17_Chr5g0441141 50.000 106 52 1 21 125 13 118 5.63e-32 119
Msa0076970 MtrunA17_Chr7g0247131 64.474 76 27 0 51 126 9 84 8.35e-32 118
Msa0076970 MtrunA17_Chr6g0487491 47.059 119 54 2 14 123 6 124 9.20e-32 117
Msa0076970 MtrunA17_Chr5g0441131 48.113 106 54 1 21 125 10 115 1.37e-30 112
Msa0076970 MtrunA17_Chr5g0434841 50.450 111 54 1 15 124 14 124 2.83e-30 115
Msa0076970 MtrunA17_Chr3g0133601 49.038 104 50 2 22 124 37 138 8.74e-30 111
Msa0076970 MtrunA17_Chr6g0454921 40.268 149 78 4 22 162 15 160 1.41e-28 108
Msa0076970 MtrunA17_Chr5g0401731 48.276 116 56 3 9 123 3 115 1.46e-28 110
Msa0076970 MtrunA17_Chr8g0342511 54.217 83 38 0 13 95 5 87 2.37e-28 104
Msa0076970 MtrunA17_Chr8g0342531 54.118 85 39 0 13 97 5 89 2.48e-28 106
Msa0076970 MtrunA17_Chr4g0042611 55.952 84 37 0 13 96 5 88 2.79e-28 103
Msa0076970 MtrunA17_Chr4g0053431 49.020 102 51 1 22 123 5 105 1.19e-27 107
Msa0076970 MtrunA17_Chr5g0395221 55.263 76 34 0 21 96 13 88 2.08e-27 101
Msa0076970 MtrunA17_Chr4g0008551 48.544 103 50 2 22 123 38 138 2.36e-27 108
Msa0076970 MtrunA17_Chr2g0323321 58.750 80 33 0 21 100 12 91 2.54e-27 102
Msa0076970 MtrunA17_Chr2g0294811 56.250 80 35 0 21 100 13 92 5.00e-27 101
Msa0076970 MtrunA17_Chr5g0429661 52.083 96 43 2 22 116 122 215 8.50e-27 106
Msa0076970 MtrunA17_Chr8g0342461 51.163 86 41 1 13 97 5 90 1.58e-26 100
Msa0076970 MtrunA17_Chr8g0342471 51.163 86 41 1 13 97 5 90 3.15e-26 100
Msa0076970 MtrunA17_Chr5g0437321 49.000 100 48 2 22 120 19 116 4.81e-25 100
Msa0076970 MtrunA17_Chr7g0238631 48.544 103 50 2 22 123 113 213 8.69e-25 103
Msa0076970 MtrunA17_Chr7g0238631 37.037 108 66 2 19 125 58 164 3.35e-13 68.9
Msa0076970 MtrunA17_Chr4g0058991 46.296 108 51 3 22 124 209 314 3.45e-24 100
Msa0076970 MtrunA17_Chr3g0139671 44.660 103 54 2 22 123 85 185 3.55e-24 101
Msa0076970 MtrunA17_Chr3g0139671 34.234 111 66 3 19 128 30 134 2.88e-11 63.5
Msa0076970 MtrunA17_Chr3g0117511 46.939 98 49 2 20 116 181 276 4.38e-24 100
Msa0076970 MtrunA17_Chr1g0157731 45.631 103 53 2 22 123 91 191 5.47e-24 100
Msa0076970 MtrunA17_Chr1g0157731 33.981 103 66 2 19 120 36 137 2.51e-11 63.5
Msa0076970 MtrunA17_Chr5g0417621 42.727 110 60 2 22 130 134 241 6.01e-23 97.1
Msa0076970 MtrunA17_Chr5g0425591 48.780 82 41 1 21 101 10 91 1.16e-22 89.4
Msa0076970 MtrunA17_Chr6g0480581 44.898 98 51 2 22 118 4 99 1.80e-22 92.8
Msa0076970 MtrunA17_Chr4g0042501 38.889 126 73 3 22 145 105 228 2.19e-22 95.5
Msa0076970 MtrunA17_Chr5g0397841 50.000 96 45 2 22 116 110 203 3.19e-22 95.1
Msa0076970 MtrunA17_Chr7g0229101 56.338 71 31 0 51 121 3 73 1.58e-21 89.7
Msa0076970 MtrunA17_Chr7g0228531 45.361 97 51 2 22 118 220 314 1.92e-21 92.8
Msa0076970 MtrunA17_Chr3g0093811 54.795 73 33 0 51 123 13 85 4.30e-21 89.7
Msa0076970 MtrunA17_Chr6g0460661 39.796 98 56 2 22 118 16 111 5.01e-21 87.0
Msa0076970 MtrunA17_Chr6g0453751 48.889 90 37 2 21 101 21 110 5.63e-21 85.9
Msa0076970 MtrunA17_Chr7g0238651 44.554 101 53 2 25 123 10 109 1.01e-20 90.1
Msa0076970 MtrunA17_Chr7g0229131 52.778 72 34 0 51 122 3 74 2.65e-20 85.5
Msa0076970 MtrunA17_Chr5g0434901 52.113 71 34 0 51 121 4 74 1.42e-19 81.6
Msa0076970 MtrunA17_Chr3g0125801 41.667 120 64 3 22 140 16 130 2.34e-19 85.5
Msa0076970 MtrunA17_Chr7g0254261 44.898 98 51 2 22 118 89 184 1.48e-18 84.0
Msa0076970 MtrunA17_Chr6g0460671 37.607 117 63 3 8 123 92 199 2.08e-18 83.6
Msa0076970 MtrunA17_Chr1g0177901 41.379 87 50 1 32 118 4 89 1.56e-17 79.0
Msa0076970 MtrunA17_Chr7g0228481 40.741 108 59 3 22 126 220 325 2.35e-17 81.3
Msa0076970 MtrunA17_Chr7g0233061 38.000 100 53 3 22 118 180 273 9.05e-17 79.0
Msa0076970 MtrunA17_Chr8g0362231 38.532 109 66 1 25 133 25 132 1.01e-16 79.3
Msa0076970 MtrunA17_Chr5g0416341 37.037 108 67 1 25 132 29 135 1.22e-16 79.0
Msa0076970 MtrunA17_Chr7g0228401 41.379 87 48 2 33 118 290 374 1.70e-15 75.9
Msa0076970 MtrunA17_Chr1g0193901 47.059 85 43 2 19 101 10 94 3.39e-14 67.4
Msa0076970 MtrunA17_Chr1g0193891 47.059 85 43 2 19 101 10 94 3.39e-14 67.4
Msa0076970 MtrunA17_Chr1g0193871 47.059 85 43 2 19 101 10 94 3.39e-14 67.4
Msa0076970 MtrunA17_Chr1g0193881 47.059 85 43 2 19 101 10 94 3.39e-14 67.4
Msa0076970 MtrunA17_Chr5g0434871 59.524 42 17 0 82 123 2 43 2.80e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0076970 AT3G24310.1 55.642 257 103 5 17 264 15 269 7.27e-83 249
Msa0076970 AT4G13480.1 50.185 271 104 6 15 264 1 261 6.86e-81 244
Msa0076970 AT3G30210.1 51.786 224 79 6 21 239 28 227 3.71e-62 197
Msa0076970 AT1G48000.1 71.429 105 30 0 21 125 33 137 9.94e-52 169
Msa0076970 AT3G27810.1 66.667 105 35 0 21 125 21 125 2.89e-50 165
Msa0076970 AT5G59780.3 63.964 111 40 0 15 125 3 113 3.10e-50 165
Msa0076970 AT3G46130.1 64.286 112 40 0 14 125 3 114 4.09e-50 166
Msa0076970 AT5G40350.1 67.647 102 33 0 21 122 18 119 1.80e-49 162
Msa0076970 AT2G47190.1 61.261 111 43 0 16 126 16 126 1.78e-48 162
Msa0076970 AT3G01530.1 60.526 114 45 0 16 129 21 134 1.90e-48 159
Msa0076970 AT1G68320.1 64.762 105 37 0 21 125 20 124 3.92e-48 161
Msa0076970 AT1G25340.1 62.857 105 39 0 21 125 19 123 9.76e-47 157
Msa0076970 AT2G16720.1 52.482 141 65 1 14 154 6 144 1.60e-46 156
Msa0076970 AT3G53200.1 62.617 107 40 0 17 123 6 112 7.60e-46 154
Msa0076970 AT4G09460.1 40.404 198 102 3 22 219 14 195 1.30e-45 153
Msa0076970 AT4G34990.1 44.086 186 78 3 14 176 6 188 5.32e-45 153
Msa0076970 AT1G22640.1 64.706 102 36 0 22 123 14 115 5.35e-45 152
Msa0076970 AT1G06180.1 59.633 109 44 0 21 129 13 121 5.97e-45 152
Msa0076970 AT4G38620.1 40.722 194 105 3 14 207 6 189 1.42e-44 152
Msa0076970 AT5G49620.1 66.964 112 37 0 14 125 20 131 1.48e-44 152
Msa0076970 AT5G26660.1 61.062 113 44 0 13 125 5 117 1.59e-44 154
Msa0076970 AT1G35515.1 60.177 113 45 0 14 126 6 118 1.68e-44 149
Msa0076970 AT5G14750.1 58.491 106 44 0 18 123 14 119 2.29e-44 149
Msa0076970 AT5G16770.4 59.259 108 44 0 16 123 8 115 2.36e-44 152
Msa0076970 AT5G16770.3 59.259 108 44 0 16 123 8 115 2.36e-44 152
Msa0076970 AT5G10280.1 58.182 110 46 0 14 123 6 115 3.02e-44 152
Msa0076970 AT3G06490.1 67.619 105 34 0 21 125 20 124 3.24e-44 152
Msa0076970 AT5G16770.1 59.259 108 44 0 16 123 8 115 4.08e-44 152
Msa0076970 AT5G16770.2 59.259 108 44 0 16 123 8 115 4.08e-44 152
Msa0076970 AT4G28110.1 59.223 103 42 0 21 123 13 115 5.88e-44 150
Msa0076970 AT5G65230.1 60.185 108 43 0 16 123 8 115 6.65e-44 151
Msa0076970 AT5G54230.1 62.136 103 39 0 21 123 13 115 7.12e-44 151
Msa0076970 AT3G13540.1 63.107 103 38 0 21 123 24 126 9.69e-44 149
Msa0076970 AT2G32460.1 57.759 116 49 0 10 125 8 123 1.00e-43 154
Msa0076970 AT4G21440.1 58.333 108 45 0 16 123 8 115 1.10e-43 151
Msa0076970 AT5G07690.1 63.725 102 37 0 21 122 13 114 1.17e-43 151
Msa0076970 AT5G40330.1 56.481 108 47 0 16 123 8 115 1.42e-43 147
Msa0076970 AT4G12350.1 63.107 103 38 0 21 123 13 115 1.94e-43 149
Msa0076970 AT3G02940.2 59.259 108 44 0 16 123 8 115 2.17e-43 149
Msa0076970 AT4G05100.1 60.194 103 41 0 21 123 14 116 2.28e-43 150
Msa0076970 AT3G61250.1 60.194 103 41 0 21 123 13 115 3.29e-43 149
Msa0076970 AT5G07700.1 62.136 103 39 0 21 123 13 115 3.47e-43 150
Msa0076970 AT5G07700.2 62.136 103 39 0 21 123 13 115 3.47e-43 150
Msa0076970 AT3G02940.1 59.259 108 44 0 16 123 8 115 3.50e-43 149
Msa0076970 AT3G02940.3 59.259 108 44 0 16 123 8 115 3.50e-43 149
Msa0076970 AT3G01140.2 64.078 103 37 0 21 123 13 115 4.11e-43 150
Msa0076970 AT5G61420.2 62.136 103 39 0 21 123 13 115 4.31e-43 150
Msa0076970 AT1G18570.1 63.107 103 38 0 21 123 14 116 5.57e-43 150
Msa0076970 AT1G34670.1 59.259 108 44 0 16 123 8 115 5.61e-43 150
Msa0076970 AT5G15310.4 63.107 103 38 0 21 123 13 115 5.84e-43 147
Msa0076970 AT2G31180.1 61.165 103 40 0 21 123 13 115 5.94e-43 147
Msa0076970 AT3G11440.2 62.136 103 39 0 21 123 42 144 6.66e-43 152
Msa0076970 AT1G66230.1 49.286 140 62 1 21 151 13 152 7.41e-43 147
Msa0076970 AT4G22680.1 62.136 103 39 0 21 123 13 115 8.29e-43 147
Msa0076970 AT3G01140.1 64.078 103 37 0 21 123 56 158 9.75e-43 150
Msa0076970 AT5G15310.1 63.107 103 38 0 21 123 13 115 1.27e-42 148
Msa0076970 AT5G16600.1 46.154 169 71 3 21 169 13 181 1.44e-42 148
Msa0076970 AT5G15310.2 63.107 103 38 0 21 123 13 115 1.48e-42 147
Msa0076970 AT2G32460.2 60.952 105 41 0 21 125 7 111 1.72e-42 151
Msa0076970 AT1G57560.1 53.333 135 54 1 13 138 5 139 2.01e-42 147
Msa0076970 AT3G47600.1 55.462 119 53 0 21 139 13 131 2.25e-42 147
Msa0076970 AT1G57560.2 59.459 111 45 0 13 123 5 115 2.33e-42 146
Msa0076970 AT5G06100.1 62.136 103 39 0 21 123 33 135 2.77e-42 150
Msa0076970 AT3G27920.1 53.782 119 55 0 16 134 10 128 2.80e-42 144
Msa0076970 AT3G11440.3 62.136 103 39 0 21 123 42 144 3.39e-42 151
Msa0076970 AT3G11440.4 62.136 103 39 0 21 123 42 144 3.39e-42 151
Msa0076970 AT3G11440.1 62.136 103 39 0 21 123 42 144 3.39e-42 151
Msa0076970 AT5G60890.1 58.182 110 46 0 16 125 8 117 3.61e-42 146
Msa0076970 AT1G25340.2 60.000 105 37 1 21 125 19 118 4.20e-42 145
Msa0076970 AT1G09540.1 59.292 113 46 0 13 125 5 117 5.27e-42 147
Msa0076970 AT3G23250.1 52.991 117 55 0 21 137 13 129 5.40e-42 145
Msa0076970 AT1G25340.3 60.000 105 37 1 21 125 19 118 8.61e-42 145
Msa0076970 AT5G06100.5 62.136 103 39 0 21 123 33 135 9.77e-42 150
Msa0076970 AT5G06100.2 62.136 103 39 0 21 123 33 135 9.77e-42 150
Msa0076970 AT5G06100.3 62.136 103 39 0 21 123 33 135 9.77e-42 150
Msa0076970 AT5G06100.4 62.136 103 39 0 21 123 33 135 9.77e-42 150
Msa0076970 AT5G62470.2 48.026 152 68 2 21 161 13 164 1.13e-41 146
Msa0076970 AT3G62610.1 60.194 103 41 0 21 123 13 115 2.42e-41 145
Msa0076970 AT4G01680.3 58.407 113 47 0 13 125 5 117 2.88e-41 142
Msa0076970 AT1G74080.1 62.745 102 38 0 21 122 13 114 3.51e-41 144
Msa0076970 AT5G62320.1 59.091 110 38 1 21 123 14 123 5.02e-41 142
Msa0076970 AT2G26960.1 62.136 103 39 0 20 122 20 122 5.67e-41 146
Msa0076970 AT5G49620.2 59.524 126 37 1 14 125 20 145 7.10e-41 143
Msa0076970 AT3G13890.2 54.955 111 50 0 13 123 5 115 7.39e-41 144
Msa0076970 AT4G01680.1 58.407 113 47 0 13 125 5 117 8.67e-41 144
Msa0076970 AT4G17785.2 61.165 103 40 0 21 123 14 116 9.02e-41 144
Msa0076970 AT5G49330.1 61.165 103 40 0 21 123 13 115 9.48e-41 144
Msa0076970 AT4G17785.1 61.165 103 40 0 21 123 14 116 1.13e-40 144
Msa0076970 AT2G47460.1 58.491 106 44 0 21 126 13 118 1.92e-40 143
Msa0076970 AT1G08810.1 53.279 122 56 1 21 142 13 133 2.96e-40 140
Msa0076970 AT5G52600.1 58.252 103 43 0 21 123 13 115 4.74e-40 138
Msa0076970 AT1G74650.1 60.194 103 41 0 21 123 13 115 1.08e-39 140
Msa0076970 AT1G79180.1 53.509 114 53 0 21 134 15 128 1.18e-39 139
Msa0076970 AT1G56160.1 52.727 110 52 0 14 123 8 117 1.56e-39 139
Msa0076970 AT3G12720.1 55.340 103 46 0 21 123 23 125 1.60e-39 139
Msa0076970 AT1G63910.1 53.043 115 54 0 13 127 5 119 2.52e-39 140
Msa0076970 AT5G12870.1 53.390 118 55 0 13 130 11 128 2.60e-39 138
Msa0076970 AT5G62470.1 47.368 152 68 3 21 161 13 163 3.06e-39 140
Msa0076970 AT3G08500.1 57.944 107 45 0 19 125 29 135 3.37e-39 139
Msa0076970 AT5G55020.1 59.804 102 41 0 21 122 27 128 4.03e-39 143
Msa0076970 AT3G48920.1 58.491 106 44 0 17 122 15 120 6.34e-39 137
Msa0076970 AT1G74430.1 53.448 116 52 1 8 123 2 115 1.40e-38 136
Msa0076970 AT4G25560.1 57.547 106 45 0 18 123 8 113 1.49e-38 136
Msa0076970 AT1G16490.1 55.340 103 46 0 21 123 15 117 2.01e-38 135
Msa0076970 AT4G26930.1 48.227 141 66 2 21 159 20 155 2.11e-38 138
Msa0076970 AT3G28910.1 58.252 103 43 0 21 123 13 115 2.62e-38 137
Msa0076970 AT5G35550.1 51.667 120 53 1 22 136 16 135 2.82e-38 135
Msa0076970 AT3G13890.1 50.833 120 50 1 13 123 5 124 7.22e-38 137
Msa0076970 AT5G14340.1 58.491 106 44 0 21 126 25 130 1.08e-37 134
Msa0076970 AT4G01680.2 52.800 125 47 1 13 125 5 129 1.15e-37 135
Msa0076970 AT3G12820.1 50.862 116 57 0 8 123 2 117 1.42e-37 132
Msa0076970 AT3G28470.1 58.163 98 41 0 21 118 13 110 2.61e-37 134
Msa0076970 AT5G56110.1 56.481 108 47 0 16 123 8 115 2.65e-37 134
Msa0076970 AT5G52260.1 58.095 105 44 0 19 123 11 115 4.60e-37 132
Msa0076970 AT4G37780.1 44.218 147 74 2 21 166 13 152 6.98e-37 132
Msa0076970 AT5G59780.2 64.835 91 28 1 35 125 6 92 1.38e-35 127
Msa0076970 AT3G46130.3 74.324 74 19 0 52 125 9 82 1.42e-35 127
Msa0076970 AT3G46130.4 65.169 89 27 1 37 125 8 92 2.01e-35 127
Msa0076970 AT5G23000.1 52.252 111 52 1 14 123 6 116 4.70e-35 128
Msa0076970 AT5G65790.1 45.324 139 63 2 21 158 13 139 1.02e-34 128
Msa0076970 AT1G66370.1 54.369 103 47 0 21 123 9 111 2.22e-34 124
Msa0076970 AT3G27810.2 69.863 73 22 0 53 125 4 76 3.53e-34 122
Msa0076970 AT3G49690.1 54.206 107 48 1 21 126 13 119 4.22e-34 125
Msa0076970 AT5G57620.1 54.808 104 46 1 21 123 13 116 4.42e-34 126
Msa0076970 AT3G53200.2 73.239 71 19 0 53 123 9 79 6.67e-34 122
Msa0076970 AT2G36890.1 54.808 104 46 1 21 123 13 116 1.01e-33 124
Msa0076970 AT1G18710.1 49.138 116 57 1 8 123 2 115 1.61e-33 123
Msa0076970 AT2G36890.2 54.808 104 46 1 21 123 54 157 1.85e-33 124
Msa0076970 AT1G79180.2 41.497 147 53 1 21 134 15 161 3.58e-33 123
Msa0076970 AT5G40350.2 70.000 70 21 0 53 122 5 74 7.95e-33 118
Msa0076970 AT1G66380.1 55.340 103 46 0 21 123 9 111 1.89e-31 114
Msa0076970 AT1G56650.1 55.340 103 46 0 21 123 9 111 1.92e-31 117
Msa0076970 AT3G60460.1 50.485 103 50 1 21 122 12 114 5.04e-31 117
Msa0076970 AT5G26660.2 69.863 73 22 0 53 125 14 86 7.91e-31 117
Msa0076970 AT1G66390.1 55.340 103 46 0 21 123 9 111 8.28e-31 115
Msa0076970 AT2G26950.1 51.546 97 47 0 20 116 16 112 1.67e-30 117
Msa0076970 AT3G47600.2 59.524 84 34 0 53 136 39 122 1.36e-28 111
Msa0076970 AT3G27785.1 54.167 96 41 2 22 116 189 282 8.65e-28 110
Msa0076970 AT4G37260.1 41.985 131 71 3 22 149 13 141 1.45e-27 108
Msa0076970 AT2G23290.1 48.696 115 55 3 10 123 2 113 1.47e-27 108
Msa0076970 AT5G14750.3 63.235 68 25 0 56 123 18 85 3.03e-27 103
Msa0076970 AT3G12820.2 64.706 68 24 0 56 123 2 69 4.81e-27 103
Msa0076970 AT2G39880.1 49.038 104 50 2 22 124 50 151 8.50e-27 107
Msa0076970 AT5G58850.1 48.696 115 51 3 22 130 105 217 8.53e-27 108
Msa0076970 AT3G09230.1 46.552 116 55 3 22 136 55 164 2.99e-26 106
Msa0076970 AT5G35550.2 51.064 94 41 1 48 136 45 138 4.15e-26 103
Msa0076970 AT5G02320.1 48.544 103 50 2 22 123 127 227 7.26e-26 106
Msa0076970 AT5G02320.1 37.864 103 62 2 19 120 72 173 4.56e-13 68.9
Msa0076970 AT5G02320.2 48.544 103 50 2 22 123 127 227 7.26e-26 106
Msa0076970 AT5G02320.2 37.864 103 62 2 19 120 72 173 4.56e-13 68.9
Msa0076970 AT5G02320.3 48.544 103 50 2 22 123 67 167 1.00e-25 105
Msa0076970 AT5G02320.3 37.864 103 62 2 19 120 12 113 6.00e-13 68.6
Msa0076970 AT3G09370.2 46.667 105 53 2 22 125 135 237 3.00e-25 104
Msa0076970 AT3G09370.2 36.893 103 63 2 19 120 80 181 1.20e-11 64.7
Msa0076970 AT3G09370.1 46.667 105 53 2 22 125 130 232 3.46e-25 104
Msa0076970 AT3G09370.1 36.893 103 63 2 19 120 75 176 1.31e-11 64.7
Msa0076970 AT3G09370.3 46.667 105 53 2 22 125 143 245 3.85e-25 104
Msa0076970 AT3G09370.3 36.893 103 63 2 19 120 88 189 1.04e-11 65.1
Msa0076970 AT5G11510.5 34.868 152 90 3 22 172 81 224 3.95e-25 104
Msa0076970 AT5G11510.5 34.951 103 65 2 19 120 26 127 5.89e-12 65.9
Msa0076970 AT5G11510.2 34.868 152 90 3 22 172 81 224 4.19e-25 104
Msa0076970 AT5G11510.2 34.951 103 65 2 19 120 26 127 6.05e-12 65.9
Msa0076970 AT5G11510.3 34.868 152 90 3 22 172 81 224 4.68e-25 104
Msa0076970 AT5G11510.3 34.951 103 65 2 19 120 26 127 6.76e-12 65.9
Msa0076970 AT5G11510.1 34.868 152 90 3 22 172 81 224 4.68e-25 104
Msa0076970 AT5G11510.1 34.951 103 65 2 19 120 26 127 6.76e-12 65.9
Msa0076970 AT5G11510.4 34.868 152 90 3 22 172 81 224 4.68e-25 104
Msa0076970 AT5G11510.4 34.951 103 65 2 19 120 26 127 6.76e-12 65.9
Msa0076970 AT4G18770.1 42.735 117 60 3 12 123 207 321 6.20e-25 102
Msa0076970 AT3G55730.1 45.631 103 53 2 22 123 56 156 9.29e-25 102
Msa0076970 AT5G11050.1 46.087 115 54 3 22 130 105 217 1.03e-24 102
Msa0076970 AT3G50060.1 44.660 103 54 2 22 123 6 106 5.21e-24 98.6
Msa0076970 AT5G67300.1 45.631 103 53 2 22 123 6 106 1.80e-23 97.1
Msa0076970 AT4G32730.1 44.660 103 54 2 22 123 87 187 2.59e-23 99.4
Msa0076970 AT4G32730.1 31.356 118 79 2 4 120 17 133 2.73e-12 67.0
Msa0076970 AT4G32730.5 44.660 103 54 2 22 123 87 187 2.75e-23 99.4
Msa0076970 AT4G32730.5 31.356 118 79 2 4 120 17 133 3.21e-12 66.6
Msa0076970 AT4G32730.4 44.660 103 54 2 22 123 87 187 2.75e-23 99.4
Msa0076970 AT4G32730.4 31.356 118 79 2 4 120 17 133 3.21e-12 66.6
Msa0076970 AT4G32730.3 44.660 103 54 2 22 123 87 187 2.75e-23 99.4
Msa0076970 AT4G32730.3 31.356 118 79 2 4 120 17 133 3.21e-12 66.6
Msa0076970 AT4G32730.2 44.660 103 54 2 22 123 87 187 2.75e-23 99.4
Msa0076970 AT4G32730.2 31.356 118 79 2 4 120 17 133 3.21e-12 66.6
Msa0076970 AT1G26780.1 40.870 115 65 2 22 135 98 210 7.06e-23 95.1
Msa0076970 AT5G40360.1 45.263 95 51 1 22 116 158 251 7.98e-23 96.3
Msa0076970 AT1G69560.1 40.000 115 66 2 22 135 107 219 1.17e-22 95.5
Msa0076970 AT1G17950.1 47.917 96 47 2 22 116 5 98 1.36e-22 93.6
Msa0076970 AT1G69560.2 40.000 115 66 2 22 135 123 235 1.37e-22 95.5
Msa0076970 AT1G26780.2 40.870 115 65 2 22 135 98 210 1.37e-22 95.5
Msa0076970 AT1G73410.1 43.519 108 58 2 22 128 6 111 1.91e-21 90.5
Msa0076970 AT1G22640.3 63.793 58 21 0 66 123 1 58 2.23e-21 89.4
Msa0076970 AT1G73410.2 43.519 108 58 2 22 128 6 111 2.31e-21 89.4
Msa0076970 AT3G23250.2 54.167 72 33 0 66 137 1 72 2.68e-21 89.7
Msa0076970 AT5G17800.1 43.269 104 58 1 22 125 93 195 2.98e-21 91.3
Msa0076970 AT1G66380.3 54.545 77 35 0 47 123 2 78 9.57e-21 85.1
Msa0076970 AT3G29020.1 39.091 110 64 2 22 130 65 172 2.32e-20 87.4
Msa0076970 AT4G33450.1 41.176 119 66 3 22 138 19 135 2.68e-20 87.4
Msa0076970 AT5G59780.1 75.000 48 12 0 78 125 1 48 3.17e-20 85.5
Msa0076970 AT5G14750.4 58.621 58 24 0 66 123 1 58 4.54e-20 84.3
Msa0076970 AT5G14750.2 58.621 58 24 0 66 123 1 58 4.54e-20 84.3
Msa0076970 AT3G46130.2 75.000 48 12 0 78 125 1 48 7.84e-20 85.1
Msa0076970 AT3G29020.2 39.091 110 64 2 22 130 67 174 8.16e-20 87.0
Msa0076970 AT2G25230.1 43.158 95 51 2 25 118 29 121 5.06e-19 83.6
Msa0076970 AT1G71030.1 47.500 80 41 1 44 123 5 83 1.05e-18 82.0
Msa0076970 AT1G71030.2 53.846 65 30 0 59 123 5 69 1.16e-18 81.6
Msa0076970 AT2G37630.1 41.584 101 56 2 25 123 7 106 1.23e-18 84.7
Msa0076970 AT4G00540.2 45.283 106 52 3 22 123 103 206 3.46e-18 83.6
Msa0076970 AT4G00540.1 45.283 106 52 3 22 123 101 204 6.25e-18 83.2
Msa0076970 AT1G66380.2 48.750 80 41 0 21 100 9 88 9.98e-18 77.0
Msa0076970 AT1G18960.1 39.216 102 59 2 22 123 10 108 2.11e-17 80.5
Msa0076970 AT1G14350.2 36.752 117 71 2 25 141 28 141 1.04e-16 79.7
Msa0076970 AT1G14350.1 36.752 117 71 2 25 141 28 141 1.04e-16 79.7
Msa0076970 AT2G02820.3 35.185 108 69 1 25 132 33 139 5.13e-16 77.0
Msa0076970 AT2G02820.1 36.937 111 63 2 25 132 33 139 8.14e-16 77.0
Msa0076970 AT2G02820.2 36.937 111 63 2 25 132 33 139 9.44e-16 77.0
Msa0076970 AT5G39700.1 38.776 98 59 1 21 118 55 151 7.18e-15 71.6
Msa0076970 AT5G40430.1 35.938 128 76 5 2 128 35 157 1.31e-14 72.0
Msa0076970 AT4G25560.2 63.043 46 17 0 78 123 2 47 5.06e-14 69.7
Msa0076970 AT3G18100.4 33.333 123 72 3 2 117 360 479 2.61e-12 67.0
Msa0076970 AT3G18100.2 32.540 126 75 3 2 120 308 430 3.26e-12 66.6
Msa0076970 AT3G18100.1 33.333 123 72 3 2 117 521 640 3.27e-12 66.6
Msa0076970 AT3G18100.3 32.540 126 75 3 2 120 473 595 3.71e-12 66.6
Msa0076970 AT5G61420.1 74.286 35 9 0 89 123 2 36 3.02e-11 62.8

Find 55 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTCTTGAGGTCTGGTCTT+AGG 0.223296 1_2:-53417547 None:intergenic
ATTTCTTTCAATATGTATTC+AGG 0.268017 1_2:+53417200 None:intergenic
AACTCTGTCTCTAGGCTTGC+AGG 0.297134 1_2:+53417347 Msa0076970:CDS
TTTGCAGGACTGAGAAGAAA+TGG 0.356634 1_2:+53417494 Msa0076970:intron
ATCTGACCCTTCTTGAGGTC+TGG 0.357234 1_2:-53417554 None:intergenic
AACAATTGCAAGAAGCTTGC+CGG 0.359550 1_2:+53417777 Msa0076970:CDS
GTGTAATGGAAGAAGATAGA+TGG 0.371974 1_2:+53417249 Msa0076970:CDS
AGAATTTGTGGGATGAACTT+TGG 0.380605 1_2:+53418166 Msa0076970:CDS
TGCTGATACACAAGAACAAC+AGG 0.383909 1_2:+53418077 Msa0076970:CDS
CCCCTCTGATGCTGCTGAAA+AGG 0.386654 1_2:+53417861 Msa0076970:CDS
ACAATGAGATAAAGAACTAT+TGG 0.387685 1_2:+53417809 Msa0076970:CDS
TGGAACTTGGATGATGCTCT+TGG 0.418349 1_2:+53418186 Msa0076970:CDS
TACATGCTAGGTGGGGAAAC+AGG 0.437338 1_2:+53417609 Msa0076970:CDS
TTCTCAAGAGACACAAGAAA+TGG 0.446329 1_2:+53418044 Msa0076970:CDS
ACTACATTGTGCACATTGGC+TGG 0.456615 1_2:-53418240 None:intergenic
TTGCAGGACTGAGAAGAAAT+GGG 0.458286 1_2:+53417495 Msa0076970:intron
CTTCAAATGAAGAGAATTTG+TGG 0.464547 1_2:+53418154 Msa0076970:CDS
TTCTTGTGTATCAGCATACA+TGG 0.469010 1_2:-53418070 None:intergenic
ACAATTGCAAGAAGCTTGCC+GGG 0.472421 1_2:+53417778 Msa0076970:CDS
CAATATGTATTCAGGAATGA+TGG 0.474198 1_2:+53417208 None:intergenic
ATCTCATTGTCTGTTCTCCC+CGG 0.478677 1_2:-53417796 None:intergenic
GTGGGATGAACTTTGGAACT+TGG 0.486294 1_2:+53418173 Msa0076970:CDS
TGTGTCTCTTGAGAAGTAGA+AGG 0.496024 1_2:-53418036 None:intergenic
CCTAGAGCTACATGCTAGGT+GGG 0.498599 1_2:+53417601 Msa0076970:CDS
AGCTGCATGGTGAAGGCAGA+TGG 0.509674 1_2:+53417324 Msa0076970:CDS
TTCAAATGAAGAGAATTTGT+GGG 0.514100 1_2:+53418155 Msa0076970:CDS
CCCACCTAGCATGTAGCTCT+AGG 0.519377 1_2:-53417601 None:intergenic
CAATACAACATGGATATGAA+AGG 0.529980 1_2:+53417967 Msa0076970:CDS
GTGTTATCTGACCCTTCTTG+AGG 0.533956 1_2:-53417559 None:intergenic
TCTATGCTCAATGATAATAG+TGG 0.536144 1_2:+53418111 Msa0076970:CDS
AATACAACATGGATATGAAA+GGG 0.545056 1_2:+53417968 Msa0076970:CDS
GGAAAAGTTGTAGATTGAGA+TGG 0.549086 1_2:+53417516 Msa0076970:CDS
GCAGATGGAACTCTGTCTCT+AGG 0.556467 1_2:+53417339 Msa0076970:CDS
GAAAAGTTGTAGATTGAGAT+GGG 0.559168 1_2:+53417517 Msa0076970:CDS
ATAGATGGAGGAAAGGACCT+TGG 0.564310 1_2:+53417264 Msa0076970:CDS
CCTAAGACCAGACCTCAAGA+AGG 0.565687 1_2:+53417547 Msa0076970:CDS
GAAGAAGATAGATGGAGGAA+AGG 0.569212 1_2:+53417257 Msa0076970:CDS
GGAATGATGGAAGGAAACAC+TGG 0.575742 1_2:+53417221 Msa0076970:CDS
AAACACTGGATGGAGTGTAA+TGG 0.585481 1_2:+53417235 Msa0076970:CDS
GAAAGGACCTTGGACTTCTG+AGG 0.594052 1_2:+53417274 Msa0076970:CDS
GATCATAGACTTGTTGCTTG+AGG 0.595685 1_2:+53417990 Msa0076970:CDS
TAATGGAAGAAGATAGATGG+AGG 0.601607 1_2:+53417252 Msa0076970:CDS
ATGTATTCAGGAATGATGGA+AGG 0.607186 1_2:+53417212 Msa0076970:CDS
TTGTCTTCCTCAGAAGTCCA+AGG 0.607855 1_2:-53417281 None:intergenic
TATGTCAAGCTGCATGGTGA+AGG 0.610102 1_2:+53417317 Msa0076970:CDS
TGATGGAAGGAAACACTGGA+TGG 0.616620 1_2:+53417225 Msa0076970:CDS
TCCTAGAGCTACATGCTAGG+TGG 0.619467 1_2:+53417600 Msa0076970:CDS
AGCAACTACATTGTGCACAT+TGG 0.622143 1_2:-53418244 None:intergenic
TAATCCTAGAGCTACATGCT+AGG 0.625705 1_2:+53417597 Msa0076970:CDS
CTAAGACCAGACCTCAAGAA+GGG 0.637988 1_2:+53417548 Msa0076970:CDS
CTAGAGCTACATGCTAGGTG+GGG 0.652296 1_2:+53417602 Msa0076970:CDS
ATTGAGTATGTCAAGCTGCA+TGG 0.654811 1_2:+53417311 Msa0076970:CDS
ACAACAACTGCAATACAACA+TGG 0.663800 1_2:+53417957 Msa0076970:CDS
CAATTGCAAGAAGCTTGCCG+GGG 0.732560 1_2:+53417779 Msa0076970:CDS
GCTGATACACAAGAACAACA+GGG 0.786231 1_2:+53418078 Msa0076970:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAATATATGATCAATA+AGG - chr1_2:53417476-53417495 None:intergenic 10.0%
!! AAAATAATATATGATCAATA+AGG - chr1_2:53417476-53417495 None:intergenic 10.0%
!! AATTGGTATTAATTAAACTA+AGG - chr1_2:53417441-53417460 None:intergenic 15.0%
!! TACTAAATAAAAAACATTTC+AGG + chr1_2:53417749-53417768 Msa0076970:intron 15.0%
!! AATTGGTATTAATTAAACTA+AGG - chr1_2:53417441-53417460 None:intergenic 15.0%
!! TACTAAATAAAAAACATTTC+AGG + chr1_2:53417749-53417768 Msa0076970:intron 15.0%
!! CAAAAAATGTGTATAAAGTT+TGG - chr1_2:53417389-53417408 None:intergenic 20.0%
!!! TGATCATATATTATTTTTGC+AGG + chr1_2:53417479-53417498 Msa0076970:intron 20.0%
!! TAAATAAAAAACATTTCAGG+TGG + chr1_2:53417752-53417771 Msa0076970:intron 20.0%
!! CAAAAAATGTGTATAAAGTT+TGG - chr1_2:53417389-53417408 None:intergenic 20.0%
!!! TGATCATATATTATTTTTGC+AGG + chr1_2:53417479-53417498 Msa0076970:intron 20.0%
!! TAAATAAAAAACATTTCAGG+TGG + chr1_2:53417752-53417771 Msa0076970:intron 20.0%
! TAAGGAGTTAAGAATTCAAT+TGG - chr1_2:53417458-53417477 None:intergenic 25.0%
! ACAATGAGATAAAGAACTAT+TGG + chr1_2:53417809-53417828 Msa0076970:CDS 25.0%
! AATACAACATGGATATGAAA+GGG + chr1_2:53417968-53417987 Msa0076970:CDS 25.0%
! TTCAAATGAAGAGAATTTGT+GGG + chr1_2:53418155-53418174 Msa0076970:CDS 25.0%
! TAAGGAGTTAAGAATTCAAT+TGG - chr1_2:53417458-53417477 None:intergenic 25.0%
! ACAATGAGATAAAGAACTAT+TGG + chr1_2:53417809-53417828 Msa0076970:CDS 25.0%
! AATACAACATGGATATGAAA+GGG + chr1_2:53417968-53417987 Msa0076970:CDS 25.0%
! TTCAAATGAAGAGAATTTGT+GGG + chr1_2:53418155-53418174 Msa0076970:CDS 25.0%
GAAAAGTTGTAGATTGAGAT+GGG + chr1_2:53417517-53417536 Msa0076970:CDS 30.0%
CAATACAACATGGATATGAA+AGG + chr1_2:53417967-53417986 Msa0076970:CDS 30.0%
TCTATGCTCAATGATAATAG+TGG + chr1_2:53418111-53418130 Msa0076970:CDS 30.0%
CTTCAAATGAAGAGAATTTG+TGG + chr1_2:53418154-53418173 Msa0076970:CDS 30.0%
GAAAAGTTGTAGATTGAGAT+GGG + chr1_2:53417517-53417536 Msa0076970:CDS 30.0%
CAATACAACATGGATATGAA+AGG + chr1_2:53417967-53417986 Msa0076970:CDS 30.0%
TCTATGCTCAATGATAATAG+TGG + chr1_2:53418111-53418130 Msa0076970:CDS 30.0%
CTTCAAATGAAGAGAATTTG+TGG + chr1_2:53418154-53418173 Msa0076970:CDS 30.0%
! ATGTATTCAGGAATGATGGA+AGG + chr1_2:53417212-53417231 Msa0076970:CDS 35.0%
! GTGTAATGGAAGAAGATAGA+TGG + chr1_2:53417249-53417268 Msa0076970:CDS 35.0%
TAATGGAAGAAGATAGATGG+AGG + chr1_2:53417252-53417271 Msa0076970:CDS 35.0%
!! AAGGTACAAAGTACTGTGTT+AGG - chr1_2:53417422-53417441 None:intergenic 35.0%
GGAAAAGTTGTAGATTGAGA+TGG + chr1_2:53417516-53417535 Msa0076970:CDS 35.0%
CAGGAAACATGTAAGTTCAA+GGG - chr1_2:53417653-53417672 None:intergenic 35.0%
ACAGGAAACATGTAAGTTCA+AGG - chr1_2:53417654-53417673 None:intergenic 35.0%
AAGTGTCACATGTCTAATAC+AGG - chr1_2:53417672-53417691 None:intergenic 35.0%
CGAAAAATCGTTCTTTCAAG+AGG + chr1_2:53417884-53417903 Msa0076970:CDS 35.0%
ACAACAACTGCAATACAACA+TGG + chr1_2:53417957-53417976 Msa0076970:CDS 35.0%
TTCTCAAGAGACACAAGAAA+TGG + chr1_2:53418044-53418063 Msa0076970:CDS 35.0%
TTCTTGTGTATCAGCATACA+TGG - chr1_2:53418073-53418092 None:intergenic 35.0%
AGAATTTGTGGGATGAACTT+TGG + chr1_2:53418166-53418185 Msa0076970:CDS 35.0%
! ATGTATTCAGGAATGATGGA+AGG + chr1_2:53417212-53417231 Msa0076970:CDS 35.0%
! GTGTAATGGAAGAAGATAGA+TGG + chr1_2:53417249-53417268 Msa0076970:CDS 35.0%
TAATGGAAGAAGATAGATGG+AGG + chr1_2:53417252-53417271 Msa0076970:CDS 35.0%
!! AAGGTACAAAGTACTGTGTT+AGG - chr1_2:53417422-53417441 None:intergenic 35.0%
GGAAAAGTTGTAGATTGAGA+TGG + chr1_2:53417516-53417535 Msa0076970:CDS 35.0%
CAGGAAACATGTAAGTTCAA+GGG - chr1_2:53417653-53417672 None:intergenic 35.0%
ACAGGAAACATGTAAGTTCA+AGG - chr1_2:53417654-53417673 None:intergenic 35.0%
AAGTGTCACATGTCTAATAC+AGG - chr1_2:53417672-53417691 None:intergenic 35.0%
CGAAAAATCGTTCTTTCAAG+AGG + chr1_2:53417884-53417903 Msa0076970:CDS 35.0%
ACAACAACTGCAATACAACA+TGG + chr1_2:53417957-53417976 Msa0076970:CDS 35.0%
TTCTCAAGAGACACAAGAAA+TGG + chr1_2:53418044-53418063 Msa0076970:CDS 35.0%
TTCTTGTGTATCAGCATACA+TGG - chr1_2:53418073-53418092 None:intergenic 35.0%
AGAATTTGTGGGATGAACTT+TGG + chr1_2:53418166-53418185 Msa0076970:CDS 35.0%
AAACACTGGATGGAGTGTAA+TGG + chr1_2:53417235-53417254 Msa0076970:CDS 40.0%
GAAGAAGATAGATGGAGGAA+AGG + chr1_2:53417257-53417276 Msa0076970:CDS 40.0%
ATTGAGTATGTCAAGCTGCA+TGG + chr1_2:53417311-53417330 Msa0076970:CDS 40.0%
TTTGCAGGACTGAGAAGAAA+TGG + chr1_2:53417494-53417513 Msa0076970:intron 40.0%
TTGCAGGACTGAGAAGAAAT+GGG + chr1_2:53417495-53417514 Msa0076970:intron 40.0%
TAATCCTAGAGCTACATGCT+AGG + chr1_2:53417597-53417616 Msa0076970:CDS 40.0%
AACAATTGCAAGAAGCTTGC+CGG + chr1_2:53417777-53417796 Msa0076970:CDS 40.0%
!! GATCATAGACTTGTTGCTTG+AGG + chr1_2:53417990-53418009 Msa0076970:CDS 40.0%
TGTGTCTCTTGAGAAGTAGA+AGG - chr1_2:53418039-53418058 None:intergenic 40.0%
TGCTGATACACAAGAACAAC+AGG + chr1_2:53418077-53418096 Msa0076970:CDS 40.0%
GCTGATACACAAGAACAACA+GGG + chr1_2:53418078-53418097 Msa0076970:CDS 40.0%
AGCAACTACATTGTGCACAT+TGG - chr1_2:53418247-53418266 None:intergenic 40.0%
AAACACTGGATGGAGTGTAA+TGG + chr1_2:53417235-53417254 Msa0076970:CDS 40.0%
GAAGAAGATAGATGGAGGAA+AGG + chr1_2:53417257-53417276 Msa0076970:CDS 40.0%
ATTGAGTATGTCAAGCTGCA+TGG + chr1_2:53417311-53417330 Msa0076970:CDS 40.0%
TTTGCAGGACTGAGAAGAAA+TGG + chr1_2:53417494-53417513 Msa0076970:intron 40.0%
TTGCAGGACTGAGAAGAAAT+GGG + chr1_2:53417495-53417514 Msa0076970:intron 40.0%
TAATCCTAGAGCTACATGCT+AGG + chr1_2:53417597-53417616 Msa0076970:CDS 40.0%
AACAATTGCAAGAAGCTTGC+CGG + chr1_2:53417777-53417796 Msa0076970:CDS 40.0%
!! GATCATAGACTTGTTGCTTG+AGG + chr1_2:53417990-53418009 Msa0076970:CDS 40.0%
TGTGTCTCTTGAGAAGTAGA+AGG - chr1_2:53418039-53418058 None:intergenic 40.0%
TGCTGATACACAAGAACAAC+AGG + chr1_2:53418077-53418096 Msa0076970:CDS 40.0%
GCTGATACACAAGAACAACA+GGG + chr1_2:53418078-53418097 Msa0076970:CDS 40.0%
AGCAACTACATTGTGCACAT+TGG - chr1_2:53418247-53418266 None:intergenic 40.0%
! GGAATGATGGAAGGAAACAC+TGG + chr1_2:53417221-53417240 Msa0076970:CDS 45.0%
TGATGGAAGGAAACACTGGA+TGG + chr1_2:53417225-53417244 Msa0076970:CDS 45.0%
ATAGATGGAGGAAAGGACCT+TGG + chr1_2:53417264-53417283 Msa0076970:CDS 45.0%
TTGTCTTCCTCAGAAGTCCA+AGG - chr1_2:53417284-53417303 None:intergenic 45.0%
TATGTCAAGCTGCATGGTGA+AGG + chr1_2:53417317-53417336 Msa0076970:CDS 45.0%
CTAAGACCAGACCTCAAGAA+GGG + chr1_2:53417548-53417567 Msa0076970:CDS 45.0%
GTGTTATCTGACCCTTCTTG+AGG - chr1_2:53417562-53417581 None:intergenic 45.0%
ACAATTGCAAGAAGCTTGCC+GGG + chr1_2:53417778-53417797 Msa0076970:CDS 45.0%
ATCTCATTGTCTGTTCTCCC+CGG - chr1_2:53417799-53417818 None:intergenic 45.0%
!! GTGGGATGAACTTTGGAACT+TGG + chr1_2:53418173-53418192 Msa0076970:CDS 45.0%
TGGAACTTGGATGATGCTCT+TGG + chr1_2:53418186-53418205 Msa0076970:CDS 45.0%
ACTACATTGTGCACATTGGC+TGG - chr1_2:53418243-53418262 None:intergenic 45.0%
! GGAATGATGGAAGGAAACAC+TGG + chr1_2:53417221-53417240 Msa0076970:CDS 45.0%
TGATGGAAGGAAACACTGGA+TGG + chr1_2:53417225-53417244 Msa0076970:CDS 45.0%
ATAGATGGAGGAAAGGACCT+TGG + chr1_2:53417264-53417283 Msa0076970:CDS 45.0%
TTGTCTTCCTCAGAAGTCCA+AGG - chr1_2:53417284-53417303 None:intergenic 45.0%
TATGTCAAGCTGCATGGTGA+AGG + chr1_2:53417317-53417336 Msa0076970:CDS 45.0%
CTAAGACCAGACCTCAAGAA+GGG + chr1_2:53417548-53417567 Msa0076970:CDS 45.0%
GTGTTATCTGACCCTTCTTG+AGG - chr1_2:53417562-53417581 None:intergenic 45.0%
ACAATTGCAAGAAGCTTGCC+GGG + chr1_2:53417778-53417797 Msa0076970:CDS 45.0%
ATCTCATTGTCTGTTCTCCC+CGG - chr1_2:53417799-53417818 None:intergenic 45.0%
!! GTGGGATGAACTTTGGAACT+TGG + chr1_2:53418173-53418192 Msa0076970:CDS 45.0%
TGGAACTTGGATGATGCTCT+TGG + chr1_2:53418186-53418205 Msa0076970:CDS 45.0%
ACTACATTGTGCACATTGGC+TGG - chr1_2:53418243-53418262 None:intergenic 45.0%
GAAAGGACCTTGGACTTCTG+AGG + chr1_2:53417274-53417293 Msa0076970:CDS 50.0%
GCAGATGGAACTCTGTCTCT+AGG + chr1_2:53417339-53417358 Msa0076970:CDS 50.0%
AACTCTGTCTCTAGGCTTGC+AGG + chr1_2:53417347-53417366 Msa0076970:CDS 50.0%
! CCTTCTTGAGGTCTGGTCTT+AGG - chr1_2:53417550-53417569 None:intergenic 50.0%
CCTAAGACCAGACCTCAAGA+AGG + chr1_2:53417547-53417566 Msa0076970:CDS 50.0%
ATCTGACCCTTCTTGAGGTC+TGG - chr1_2:53417557-53417576 None:intergenic 50.0%
TCCTAGAGCTACATGCTAGG+TGG + chr1_2:53417600-53417619 Msa0076970:CDS 50.0%
CCTAGAGCTACATGCTAGGT+GGG + chr1_2:53417601-53417620 Msa0076970:CDS 50.0%
CTAGAGCTACATGCTAGGTG+GGG + chr1_2:53417602-53417621 Msa0076970:CDS 50.0%
TACATGCTAGGTGGGGAAAC+AGG + chr1_2:53417609-53417628 Msa0076970:CDS 50.0%
TGTTGCAACGCAACGCAACA+CGG - chr1_2:53417704-53417723 None:intergenic 50.0%
TGTTGCGTTGCGTTGCAACA+CGG + chr1_2:53417704-53417723 Msa0076970:intron 50.0%
CAATTGCAAGAAGCTTGCCG+GGG + chr1_2:53417779-53417798 Msa0076970:CDS 50.0%
! AGCAGCATCAGAGGGGTTTT+TGG - chr1_2:53417857-53417876 None:intergenic 50.0%
! CCTTTTCAGCAGCATCAGAG+GGG - chr1_2:53417864-53417883 None:intergenic 50.0%
! GCCTTTTCAGCAGCATCAGA+GGG - chr1_2:53417865-53417884 None:intergenic 50.0%
GAAAGGACCTTGGACTTCTG+AGG + chr1_2:53417274-53417293 Msa0076970:CDS 50.0%
GCAGATGGAACTCTGTCTCT+AGG + chr1_2:53417339-53417358 Msa0076970:CDS 50.0%
AACTCTGTCTCTAGGCTTGC+AGG + chr1_2:53417347-53417366 Msa0076970:CDS 50.0%
! CCTTCTTGAGGTCTGGTCTT+AGG - chr1_2:53417550-53417569 None:intergenic 50.0%
CCTAAGACCAGACCTCAAGA+AGG + chr1_2:53417547-53417566 Msa0076970:CDS 50.0%
ATCTGACCCTTCTTGAGGTC+TGG - chr1_2:53417557-53417576 None:intergenic 50.0%
TCCTAGAGCTACATGCTAGG+TGG + chr1_2:53417600-53417619 Msa0076970:CDS 50.0%
CCTAGAGCTACATGCTAGGT+GGG + chr1_2:53417601-53417620 Msa0076970:CDS 50.0%
CTAGAGCTACATGCTAGGTG+GGG + chr1_2:53417602-53417621 Msa0076970:CDS 50.0%
TACATGCTAGGTGGGGAAAC+AGG + chr1_2:53417609-53417628 Msa0076970:CDS 50.0%
TGTTGCAACGCAACGCAACA+CGG - chr1_2:53417704-53417723 None:intergenic 50.0%
TGTTGCGTTGCGTTGCAACA+CGG + chr1_2:53417704-53417723 Msa0076970:intron 50.0%
CAATTGCAAGAAGCTTGCCG+GGG + chr1_2:53417779-53417798 Msa0076970:CDS 50.0%
! AGCAGCATCAGAGGGGTTTT+TGG - chr1_2:53417857-53417876 None:intergenic 50.0%
! CCTTTTCAGCAGCATCAGAG+GGG - chr1_2:53417864-53417883 None:intergenic 50.0%
! GCCTTTTCAGCAGCATCAGA+GGG - chr1_2:53417865-53417884 None:intergenic 50.0%
AGCTGCATGGTGAAGGCAGA+TGG + chr1_2:53417324-53417343 Msa0076970:CDS 55.0%
CCCACCTAGCATGTAGCTCT+AGG - chr1_2:53417604-53417623 None:intergenic 55.0%
GTTGCAACGCAACGCAACAC+GGG - chr1_2:53417703-53417722 None:intergenic 55.0%
GTTGCGTTGCGTTGCAACAC+GGG + chr1_2:53417705-53417724 Msa0076970:intron 55.0%
CCCCTCTGATGCTGCTGAAA+AGG + chr1_2:53417861-53417880 Msa0076970:CDS 55.0%
! CGCCTTTTCAGCAGCATCAG+AGG - chr1_2:53417866-53417885 None:intergenic 55.0%
AGCTGCATGGTGAAGGCAGA+TGG + chr1_2:53417324-53417343 Msa0076970:CDS 55.0%
CCCACCTAGCATGTAGCTCT+AGG - chr1_2:53417604-53417623 None:intergenic 55.0%
GTTGCAACGCAACGCAACAC+GGG - chr1_2:53417703-53417722 None:intergenic 55.0%
GTTGCGTTGCGTTGCAACAC+GGG + chr1_2:53417705-53417724 Msa0076970:intron 55.0%
CCCCTCTGATGCTGCTGAAA+AGG + chr1_2:53417861-53417880 Msa0076970:CDS 55.0%
! CGCCTTTTCAGCAGCATCAG+AGG - chr1_2:53417866-53417885 None:intergenic 55.0%
AACGCAACGCAACACGGGTC+TGG - chr1_2:53417698-53417717 None:intergenic 60.0%
AACGCAACGCAACACGGGTC+TGG - chr1_2:53417698-53417717 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 53417212 53418278 53417212 ID=Msa0076970;Name=Msa0076970
chr1_2 mRNA 53417212 53418278 53417212 ID=Msa0076970-mRNA-1;Parent=Msa0076970;Name=Msa0076970-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|1|1|3|0|264
chr1_2 exon 53417212 53417368 53417212 ID=Msa0076970-mRNA-1:exon:16530;Parent=Msa0076970-mRNA-1
chr1_2 exon 53417501 53417630 53417501 ID=Msa0076970-mRNA-1:exon:16531;Parent=Msa0076970-mRNA-1
chr1_2 exon 53417771 53418278 53417771 ID=Msa0076970-mRNA-1:exon:16532;Parent=Msa0076970-mRNA-1
chr1_2 CDS 53417212 53417368 53417212 ID=Msa0076970-mRNA-1:cds;Parent=Msa0076970-mRNA-1
chr1_2 CDS 53417501 53417630 53417501 ID=Msa0076970-mRNA-1:cds;Parent=Msa0076970-mRNA-1
chr1_2 CDS 53417771 53418278 53417771 ID=Msa0076970-mRNA-1:cds;Parent=Msa0076970-mRNA-1
Gene Sequence

>Msa0076970

ATGTATTCAGGAATGATGGAAGGAAACACTGGATGGAGTGTAATGGAAGAAGATAGATGGAGGAAAGGACCTTGGACTTCTGAGGAAGACAAATTACTCATTGAGTATGTCAAGCTGCATGGTGAAGGCAGATGGAACTCTGTCTCTAGGCTTGCAGGACTGAGAAGAAATGGGAAAAGTTGTAGATTGAGATGGGTGAACTACCTAAGACCAGACCTCAAGAAGGGTCAGATAACACAACAAGAAGAAAGCATAATCCTAGAGCTACATGCTAGGTGGGGAAACAGGTGGTCAACAATTGCAAGAAGCTTGCCGGGGAGAACAGACAATGAGATAAAGAACTATTGGAGAACTCATTTCAAGAAAAAGACCAAAAACCCCTCTGATGCTGCTGAAAAGGCGAAAAATCGTTCTTTCAAGAGGCAGCAGCAACAACAATTGAAGAAACAACAGCAACAAGTTCAGATGCAGCAACAACAACTGCAATACAACATGGATATGAAAGGGATCATAGACTTGTTGCTTGAGGAAAATGACTACTGTACTAGTGTGCCTTCTACTTCTCAAGAGACACAAGAAATGGTTTCCATGTATGCTGATACACAAGAACAACAGGGTTGCTTTTATTCTATGCTCAATGATAATAGTGGTAATGTCTATGCACAAGAGTCTTCAAATGAAGAGAATTTGTGGGATGAACTTTGGAACTTGGATGATGCTCTTGGAAATTCAATGCAGCTAATGCTTCAAGCAAAGCCAGCCAATGTGCACAATGTAGTTGCTCCCTTTTGTTAA
Protein sequence

>Msa0076970

MYSGMMEGNTGWSVMEEDRWRKGPWTSEEDKLLIEYVKLHGEGRWNSVSRLAGLRRNGKSCRLRWVNYLRPDLKKGQITQQEESIILELHARWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKTKNPSDAAEKAKNRSFKRQQQQQLKKQQQQVQMQQQQLQYNMDMKGIIDLLLEENDYCTSVPSTSQETQEMVSMYADTQEQQGCFYSMLNDNSGNVYAQESSNEENLWDELWNLDDALGNSMQLMLQAKPANVHNVVAPFC*