Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0077090 | G7I2W4 | 58.282 | 163 | 31 | 2 | 1 | 163 | 1 | 126 | 1.19e-51 | 171 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0077090 | TF | C2C2-GATA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0077090 | MtrunA17_Chr5g0399781 | 51.786 | 56 | 26 | 1 | 4 | 59 | 13 | 67 | 1.17e-11 | 61.2 |
| Msa0077090 | MtrunA17_Chr4g0055611 | 38.710 | 93 | 49 | 3 | 4 | 96 | 13 | 97 | 3.09e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 22 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCTTGTGGTTTACATTTCA+AGG | 0.339580 | 1_2:-53542655 | Msa0077090:CDS |
| ATTGGTGTCGGCATCTCTAT+TGG | 0.346524 | 1_2:+53541309 | None:intergenic |
| ATTGGTGTCGGCGTCTCTAT+TGG | 0.349108 | 1_2:+53541291 | None:intergenic |
| CCACAAGCGTTACACAATAT+TGG | 0.380139 | 1_2:+53542669 | None:intergenic |
| TTTCAACAGAAACTCAAGTT+TGG | 0.389578 | 1_2:-53542713 | Msa0077090:CDS |
| CCAAGCAATGAGATAGGTCT+TGG | 0.425187 | 1_2:-53541162 | Msa0077090:CDS |
| CACAATATTGGCGTCTCGTA+TGG | 0.440494 | 1_2:+53542681 | None:intergenic |
| TCAAACAACAAAATATCGTC+AGG | 0.502407 | 1_2:+53541204 | None:intergenic |
| TCTTGGATGCATTCGTCTAA+AGG | 0.502885 | 1_2:-53541145 | Msa0077090:CDS |
| TTTATACCAAGCAATGAGAT+AGG | 0.511374 | 1_2:-53541168 | Msa0077090:CDS |
| CCAATATTGTGTAACGCTTG+TGG | 0.532300 | 1_2:-53542669 | Msa0077090:CDS |
| GAAACTCAAGTTTGGCGCAA+AGG | 0.544030 | 1_2:-53542705 | Msa0077090:CDS |
| CCAAGACCTATCTCATTGCT+TGG | 0.545705 | 1_2:+53541162 | None:intergenic |
| GGTTTACATTTCAAGGCGAA+AGG | 0.567422 | 1_2:-53542648 | Msa0077090:CDS |
| AATAGAGACGCCGACACCAA+TGG | 0.575440 | 1_2:-53541289 | Msa0077090:CDS |
| GTCGGCGTCTCTATTGGTGT+CGG | 0.578211 | 1_2:+53541297 | None:intergenic |
| TCTTCGGGAGATAGTTAGCA+AGG | 0.579240 | 1_2:+53542622 | None:intergenic |
| AAAAGCGTTCATTTGTAGAG+AGG | 0.581892 | 1_2:-53541356 | Msa0077090:CDS |
| GGAAACTCATCCATTGGTGT+CGG | 0.599667 | 1_2:+53541279 | None:intergenic |
| AGCCCTGCAAAATCAGTCAT+CGG | 0.602139 | 1_2:-53542598 | Msa0077090:CDS |
| GATACTTCTACAGATCAAGA+TGG | 0.615323 | 1_2:-53541117 | Msa0077090:CDS |
| CTTCGGGAGATAGTTAGCAA+GGG | 0.642252 | 1_2:+53542623 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTAATTTATGATTTTCT+TGG | - | chr1_2:53541579-53541598 | Msa0077090:intron | 10.0% |
| !!! | TATTAATTTATGATTTTCTT+GGG | - | chr1_2:53541580-53541599 | Msa0077090:intron | 10.0% |
| !!! | TAATAAGATAATAATTTTTC+TGG | + | chr1_2:53541628-53541647 | None:intergenic | 10.0% |
| !!! | TTATTAATTTATGATTTTCT+TGG | - | chr1_2:53541579-53541598 | Msa0077090:intron | 10.0% |
| !!! | TATTAATTTATGATTTTCTT+GGG | - | chr1_2:53541580-53541599 | Msa0077090:intron | 10.0% |
| !!! | TAATAAGATAATAATTTTTC+TGG | + | chr1_2:53541628-53541647 | None:intergenic | 10.0% |
| !! | TCTAAATTAATAAATTTCTC+CGG | + | chr1_2:53541353-53541372 | None:intergenic | 15.0% |
| !!! | AGTTTTTCAATTTTTTACAT+TGG | - | chr1_2:53541656-53541675 | Msa0077090:intron | 15.0% |
| !!! | TCTAAAATAATAAATTTGTC+CGG | + | chr1_2:53541694-53541713 | None:intergenic | 15.0% |
| !!! | ACATTGTAAGAATATTTTTA+AGG | - | chr1_2:53541937-53541956 | Msa0077090:intron | 15.0% |
| !!! | CATTGTAAGAATATTTTTAA+GGG | - | chr1_2:53541938-53541957 | Msa0077090:intron | 15.0% |
| !!! | ATTGTAAGAATATTTTTAAG+GGG | - | chr1_2:53541939-53541958 | Msa0077090:intron | 15.0% |
| !! | TTAAAATATGAAACTTCATT+TGG | + | chr1_2:53542126-53542145 | None:intergenic | 15.0% |
| !! | TCTAAATTAATAAATTTCTC+CGG | + | chr1_2:53541353-53541372 | None:intergenic | 15.0% |
| !!! | AGTTTTTCAATTTTTTACAT+TGG | - | chr1_2:53541656-53541675 | Msa0077090:intron | 15.0% |
| !!! | TCTAAAATAATAAATTTGTC+CGG | + | chr1_2:53541694-53541713 | None:intergenic | 15.0% |
| !!! | ACATTGTAAGAATATTTTTA+AGG | - | chr1_2:53541937-53541956 | Msa0077090:intron | 15.0% |
| !!! | CATTGTAAGAATATTTTTAA+GGG | - | chr1_2:53541938-53541957 | Msa0077090:intron | 15.0% |
| !!! | ATTGTAAGAATATTTTTAAG+GGG | - | chr1_2:53541939-53541958 | Msa0077090:intron | 15.0% |
| !! | TTAAAATATGAAACTTCATT+TGG | + | chr1_2:53542126-53542145 | None:intergenic | 15.0% |
| !!! | AGTTTTAACTGTAAATTGAA+GGG | + | chr1_2:53541308-53541327 | None:intergenic | 20.0% |
| !! | CTCTTTAAATTAATAATGTC+AGG | - | chr1_2:53541326-53541345 | Msa0077090:CDS | 20.0% |
| !! | AAACTCTTTGAATTAATACT+CGG | + | chr1_2:53541732-53541751 | None:intergenic | 20.0% |
| !!! | AGTTTTAACTGTAAATTGAA+GGG | + | chr1_2:53541308-53541327 | None:intergenic | 20.0% |
| !! | CTCTTTAAATTAATAATGTC+AGG | - | chr1_2:53541326-53541345 | Msa0077090:CDS | 20.0% |
| !! | AAACTCTTTGAATTAATACT+CGG | + | chr1_2:53541732-53541751 | None:intergenic | 20.0% |
| !!! | GAGTTTTAACTGTAAATTGA+AGG | + | chr1_2:53541309-53541328 | None:intergenic | 25.0% |
| ! | TAAATTAATAATGTCAGGAC+CGG | - | chr1_2:53541331-53541350 | Msa0077090:CDS | 25.0% |
| ! | TCGATTGAAAATGAAAATGT+TGG | - | chr1_2:53541856-53541875 | Msa0077090:intron | 25.0% |
| ! | CGATTGAAAATGAAAATGTT+GGG | - | chr1_2:53541857-53541876 | Msa0077090:intron | 25.0% |
| !! | ATGGGTATTGTTATAATTCA+GGG | - | chr1_2:53541970-53541989 | Msa0077090:intron | 25.0% |
| ! | ACAAATATCTCCATAAATGT+AGG | + | chr1_2:53542220-53542239 | None:intergenic | 25.0% |
| ! | GTGGGAAAAATACAAATTTA+TGG | - | chr1_2:53542432-53542451 | Msa0077090:intron | 25.0% |
| !!! | GAGTTTTAACTGTAAATTGA+AGG | + | chr1_2:53541309-53541328 | None:intergenic | 25.0% |
| ! | TAAATTAATAATGTCAGGAC+CGG | - | chr1_2:53541331-53541350 | Msa0077090:CDS | 25.0% |
| ! | TCGATTGAAAATGAAAATGT+TGG | - | chr1_2:53541856-53541875 | Msa0077090:intron | 25.0% |
| ! | CGATTGAAAATGAAAATGTT+GGG | - | chr1_2:53541857-53541876 | Msa0077090:intron | 25.0% |
| !! | ATGGGTATTGTTATAATTCA+GGG | - | chr1_2:53541970-53541989 | Msa0077090:intron | 25.0% |
| ! | ACAAATATCTCCATAAATGT+AGG | + | chr1_2:53542220-53542239 | None:intergenic | 25.0% |
| ! | GTGGGAAAAATACAAATTTA+TGG | - | chr1_2:53542432-53542451 | Msa0077090:intron | 25.0% |
| TTTCAACAGAAACTCAAGTT+TGG | - | chr1_2:53541117-53541136 | Msa0077090:CDS | 30.0% | |
| !!! | CAGATGTTTTTTCAATGTCA+AGG | + | chr1_2:53541259-53541278 | None:intergenic | 30.0% |
| ACTATACATACCAAACGAAA+AGG | - | chr1_2:53541433-53541452 | Msa0077090:intron | 30.0% | |
| ! | GACTAATTTTCCTTTTCGTT+TGG | + | chr1_2:53541446-53541465 | None:intergenic | 30.0% |
| TTGGGACCGAAAATTATAAA+GGG | - | chr1_2:53541598-53541617 | Msa0077090:intron | 30.0% | |
| ! | GGAGATCCCTTTATAATTTT+CGG | + | chr1_2:53541607-53541626 | None:intergenic | 30.0% |
| !! | ATTTTTCCTTTTCTAGTGCA+TGG | - | chr1_2:53541768-53541787 | Msa0077090:intron | 30.0% |
| !! | TTTTTCCTTTTCTAGTGCAT+GGG | - | chr1_2:53541769-53541788 | Msa0077090:intron | 30.0% |
| ACTCATAAGTAGTGTAGAAT+GGG | - | chr1_2:53541884-53541903 | Msa0077090:intron | 30.0% | |
| !! | TTTTTAAGGGGTACAATTCA+TGG | - | chr1_2:53541951-53541970 | Msa0077090:intron | 30.0% |
| !! | TTTTAAGGGGTACAATTCAT+GGG | - | chr1_2:53541952-53541971 | Msa0077090:intron | 30.0% |
| ! | CATGGGTATTGTTATAATTC+AGG | - | chr1_2:53541969-53541988 | Msa0077090:intron | 30.0% |
| ! | TGGGTATTGTTATAATTCAG+GGG | - | chr1_2:53541971-53541990 | Msa0077090:intron | 30.0% |
| !! | ATTTTAAGTAGACACAGCAT+TGG | - | chr1_2:53542139-53542158 | Msa0077090:intron | 30.0% |
| ACTCTATATGCCTACATTTA+TGG | - | chr1_2:53542207-53542226 | Msa0077090:intron | 30.0% | |
| AATGACAACTAAAGAAGAGT+TGG | - | chr1_2:53542248-53542267 | Msa0077090:intron | 30.0% | |
| CTAGCTAATGTGTAACTATA+AGG | + | chr1_2:53542299-53542318 | None:intergenic | 30.0% | |
| CACATTAGCTAGTATTCTTA+TGG | - | chr1_2:53542307-53542326 | Msa0077090:intron | 30.0% | |
| !!! | CATTAGTACCTTATTTTCTC+AGG | - | chr1_2:53542394-53542413 | Msa0077090:intron | 30.0% |
| !!! | ACAAATGAACGCTTTTTTTG+AGG | + | chr1_2:53542470-53542489 | None:intergenic | 30.0% |
| TCAAACAACAAAATATCGTC+AGG | + | chr1_2:53542629-53542648 | None:intergenic | 30.0% | |
| TTTATACCAAGCAATGAGAT+AGG | - | chr1_2:53542662-53542681 | Msa0077090:CDS | 30.0% | |
| TTTCAACAGAAACTCAAGTT+TGG | - | chr1_2:53541117-53541136 | Msa0077090:CDS | 30.0% | |
| !!! | CAGATGTTTTTTCAATGTCA+AGG | + | chr1_2:53541259-53541278 | None:intergenic | 30.0% |
| ACTATACATACCAAACGAAA+AGG | - | chr1_2:53541433-53541452 | Msa0077090:intron | 30.0% | |
| ! | GACTAATTTTCCTTTTCGTT+TGG | + | chr1_2:53541446-53541465 | None:intergenic | 30.0% |
| TTGGGACCGAAAATTATAAA+GGG | - | chr1_2:53541598-53541617 | Msa0077090:intron | 30.0% | |
| ! | GGAGATCCCTTTATAATTTT+CGG | + | chr1_2:53541607-53541626 | None:intergenic | 30.0% |
| !! | ATTTTTCCTTTTCTAGTGCA+TGG | - | chr1_2:53541768-53541787 | Msa0077090:intron | 30.0% |
| !! | TTTTTCCTTTTCTAGTGCAT+GGG | - | chr1_2:53541769-53541788 | Msa0077090:intron | 30.0% |
| ACTCATAAGTAGTGTAGAAT+GGG | - | chr1_2:53541884-53541903 | Msa0077090:intron | 30.0% | |
| !! | TTTTTAAGGGGTACAATTCA+TGG | - | chr1_2:53541951-53541970 | Msa0077090:intron | 30.0% |
| !! | TTTTAAGGGGTACAATTCAT+GGG | - | chr1_2:53541952-53541971 | Msa0077090:intron | 30.0% |
| ! | CATGGGTATTGTTATAATTC+AGG | - | chr1_2:53541969-53541988 | Msa0077090:intron | 30.0% |
| ! | TGGGTATTGTTATAATTCAG+GGG | - | chr1_2:53541971-53541990 | Msa0077090:intron | 30.0% |
| !! | ATTTTAAGTAGACACAGCAT+TGG | - | chr1_2:53542139-53542158 | Msa0077090:intron | 30.0% |
| ACTCTATATGCCTACATTTA+TGG | - | chr1_2:53542207-53542226 | Msa0077090:intron | 30.0% | |
| AATGACAACTAAAGAAGAGT+TGG | - | chr1_2:53542248-53542267 | Msa0077090:intron | 30.0% | |
| CTAGCTAATGTGTAACTATA+AGG | + | chr1_2:53542299-53542318 | None:intergenic | 30.0% | |
| CACATTAGCTAGTATTCTTA+TGG | - | chr1_2:53542307-53542326 | Msa0077090:intron | 30.0% | |
| !!! | CATTAGTACCTTATTTTCTC+AGG | - | chr1_2:53542394-53542413 | Msa0077090:intron | 30.0% |
| !!! | ACAAATGAACGCTTTTTTTG+AGG | + | chr1_2:53542470-53542489 | None:intergenic | 30.0% |
| TCAAACAACAAAATATCGTC+AGG | + | chr1_2:53542629-53542648 | None:intergenic | 30.0% | |
| TTTATACCAAGCAATGAGAT+AGG | - | chr1_2:53542662-53542681 | Msa0077090:CDS | 30.0% | |
| ! | CACTGCAACGTAATTTTAAG+AGG | + | chr1_2:53541473-53541492 | None:intergenic | 35.0% |
| CTTGGGACCGAAAATTATAA+AGG | - | chr1_2:53541597-53541616 | Msa0077090:intron | 35.0% | |
| !!! | TTTTTTACATTGGCCCAAGT+CGG | - | chr1_2:53541666-53541685 | Msa0077090:intron | 35.0% |
| TAAAACCCATGCACTAGAAA+AGG | + | chr1_2:53541777-53541796 | None:intergenic | 35.0% | |
| GACTCATAAGTAGTGTAGAA+TGG | - | chr1_2:53541883-53541902 | Msa0077090:intron | 35.0% | |
| ! | TCGTTGCAATGTGGATTAAA+GGG | - | chr1_2:53542089-53542108 | Msa0077090:intron | 35.0% |
| !!! | TAGTACCTTATTTTCTCAGG+TGG | - | chr1_2:53542397-53542416 | Msa0077090:intron | 35.0% |
| !!! | AGTACCTTATTTTCTCAGGT+GGG | - | chr1_2:53542398-53542417 | Msa0077090:intron | 35.0% |
| AATACCCACCTGAGAAAATA+AGG | + | chr1_2:53542405-53542424 | None:intergenic | 35.0% | |
| !! | AAAAGCGTTCATTTGTAGAG+AGG | - | chr1_2:53542474-53542493 | Msa0077090:intron | 35.0% |
| ! | TTTTGTGGAAACTCATCCAT+TGG | + | chr1_2:53542560-53542579 | None:intergenic | 35.0% |
| ! | TATAGACTGAGAAGCTTTTG+TGG | + | chr1_2:53542575-53542594 | None:intergenic | 35.0% |
| GATACTTCTACAGATCAAGA+TGG | - | chr1_2:53542713-53542732 | Msa0077090:CDS | 35.0% | |
| ! | CACTGCAACGTAATTTTAAG+AGG | + | chr1_2:53541473-53541492 | None:intergenic | 35.0% |
| CTTGGGACCGAAAATTATAA+AGG | - | chr1_2:53541597-53541616 | Msa0077090:intron | 35.0% | |
| !!! | TTTTTTACATTGGCCCAAGT+CGG | - | chr1_2:53541666-53541685 | Msa0077090:intron | 35.0% |
| TAAAACCCATGCACTAGAAA+AGG | + | chr1_2:53541777-53541796 | None:intergenic | 35.0% | |
| GACTCATAAGTAGTGTAGAA+TGG | - | chr1_2:53541883-53541902 | Msa0077090:intron | 35.0% | |
| ! | TCGTTGCAATGTGGATTAAA+GGG | - | chr1_2:53542089-53542108 | Msa0077090:intron | 35.0% |
| !!! | TAGTACCTTATTTTCTCAGG+TGG | - | chr1_2:53542397-53542416 | Msa0077090:intron | 35.0% |
| !!! | AGTACCTTATTTTCTCAGGT+GGG | - | chr1_2:53542398-53542417 | Msa0077090:intron | 35.0% |
| AATACCCACCTGAGAAAATA+AGG | + | chr1_2:53542405-53542424 | None:intergenic | 35.0% | |
| !! | AAAAGCGTTCATTTGTAGAG+AGG | - | chr1_2:53542474-53542493 | Msa0077090:intron | 35.0% |
| ! | TTTTGTGGAAACTCATCCAT+TGG | + | chr1_2:53542560-53542579 | None:intergenic | 35.0% |
| ! | TATAGACTGAGAAGCTTTTG+TGG | + | chr1_2:53542575-53542594 | None:intergenic | 35.0% |
| GATACTTCTACAGATCAAGA+TGG | - | chr1_2:53542713-53542732 | Msa0077090:CDS | 35.0% | |
| CCACAAGCGTTACACAATAT+TGG | + | chr1_2:53541164-53541183 | None:intergenic | 40.0% | |
| CCAATATTGTGTAACGCTTG+TGG | - | chr1_2:53541161-53541180 | Msa0077090:CDS | 40.0% | |
| CGCTTGTGGTTTACATTTCA+AGG | - | chr1_2:53541175-53541194 | Msa0077090:CDS | 40.0% | |
| GGTTTACATTTCAAGGCGAA+AGG | - | chr1_2:53541182-53541201 | Msa0077090:CDS | 40.0% | |
| AATTACGTTGCAGTGAACCT+TGG | - | chr1_2:53541478-53541497 | Msa0077090:intron | 40.0% | |
| ATTACGTTGCAGTGAACCTT+GGG | - | chr1_2:53541479-53541498 | Msa0077090:intron | 40.0% | |
| CTAATTTACGTTGAGTCCCA+AGG | + | chr1_2:53541498-53541517 | None:intergenic | 40.0% | |
| ! | TTTTTACATTGGCCCAAGTC+GGG | - | chr1_2:53541667-53541686 | Msa0077090:intron | 40.0% |
| !! | GTGCATGGGTTTTAATGTAG+CGG | - | chr1_2:53541783-53541802 | Msa0077090:intron | 40.0% |
| ATAAGTAGTGTAGAATGGGC+AGG | - | chr1_2:53541888-53541907 | Msa0077090:intron | 40.0% | |
| ! | ACGCTGCTAAAGTTTTCTAC+GGG | + | chr1_2:53542016-53542035 | None:intergenic | 40.0% |
| ! | CACGCTGCTAAAGTTTTCTA+CGG | + | chr1_2:53542017-53542036 | None:intergenic | 40.0% |
| ! | GTCGTTGCAATGTGGATTAA+AGG | - | chr1_2:53542088-53542107 | Msa0077090:intron | 40.0% |
| !! | TGTGGATTAAAGGGTGTTTG+AGG | - | chr1_2:53542098-53542117 | Msa0077090:intron | 40.0% |
| !! | GTGGATTAAAGGGTGTTTGA+GGG | - | chr1_2:53542099-53542118 | Msa0077090:intron | 40.0% |
| TCTTGGATGCATTCGTCTAA+AGG | - | chr1_2:53542685-53542704 | Msa0077090:CDS | 40.0% | |
| CCACAAGCGTTACACAATAT+TGG | + | chr1_2:53541164-53541183 | None:intergenic | 40.0% | |
| CCAATATTGTGTAACGCTTG+TGG | - | chr1_2:53541161-53541180 | Msa0077090:CDS | 40.0% | |
| CGCTTGTGGTTTACATTTCA+AGG | - | chr1_2:53541175-53541194 | Msa0077090:CDS | 40.0% | |
| GGTTTACATTTCAAGGCGAA+AGG | - | chr1_2:53541182-53541201 | Msa0077090:CDS | 40.0% | |
| AATTACGTTGCAGTGAACCT+TGG | - | chr1_2:53541478-53541497 | Msa0077090:intron | 40.0% | |
| ATTACGTTGCAGTGAACCTT+GGG | - | chr1_2:53541479-53541498 | Msa0077090:intron | 40.0% | |
| CTAATTTACGTTGAGTCCCA+AGG | + | chr1_2:53541498-53541517 | None:intergenic | 40.0% | |
| ! | TTTTTACATTGGCCCAAGTC+GGG | - | chr1_2:53541667-53541686 | Msa0077090:intron | 40.0% |
| !! | GTGCATGGGTTTTAATGTAG+CGG | - | chr1_2:53541783-53541802 | Msa0077090:intron | 40.0% |
| ATAAGTAGTGTAGAATGGGC+AGG | - | chr1_2:53541888-53541907 | Msa0077090:intron | 40.0% | |
| ! | ACGCTGCTAAAGTTTTCTAC+GGG | + | chr1_2:53542016-53542035 | None:intergenic | 40.0% |
| ! | CACGCTGCTAAAGTTTTCTA+CGG | + | chr1_2:53542017-53542036 | None:intergenic | 40.0% |
| ! | GTCGTTGCAATGTGGATTAA+AGG | - | chr1_2:53542088-53542107 | Msa0077090:intron | 40.0% |
| !! | TGTGGATTAAAGGGTGTTTG+AGG | - | chr1_2:53542098-53542117 | Msa0077090:intron | 40.0% |
| !! | GTGGATTAAAGGGTGTTTGA+GGG | - | chr1_2:53542099-53542118 | Msa0077090:intron | 40.0% |
| TCTTGGATGCATTCGTCTAA+AGG | - | chr1_2:53542685-53542704 | Msa0077090:CDS | 40.0% | |
| GAAACTCAAGTTTGGCGCAA+AGG | - | chr1_2:53541125-53541144 | Msa0077090:CDS | 45.0% | |
| CACAATATTGGCGTCTCGTA+TGG | + | chr1_2:53541152-53541171 | None:intergenic | 45.0% | |
| CTTCGGGAGATAGTTAGCAA+GGG | + | chr1_2:53541210-53541229 | None:intergenic | 45.0% | |
| TCTTCGGGAGATAGTTAGCA+AGG | + | chr1_2:53541211-53541230 | None:intergenic | 45.0% | |
| ! | TGATTTTGCAGGGCTCTCTT+CGG | + | chr1_2:53541227-53541246 | None:intergenic | 45.0% |
| AGCCCTGCAAAATCAGTCAT+CGG | - | chr1_2:53541232-53541251 | Msa0077090:CDS | 45.0% | |
| !! | GTCCGATGACTGATTTTGCA+GGG | + | chr1_2:53541237-53541256 | None:intergenic | 45.0% |
| ! | CGCTGCTAAAGTTTTCTACG+GGG | + | chr1_2:53542015-53542034 | None:intergenic | 45.0% |
| TGAGAGTTGTCGTTGCAATG+TGG | - | chr1_2:53542080-53542099 | Msa0077090:intron | 45.0% | |
| ! | TCTCAGGTGGGTATTTTCTC+AGG | - | chr1_2:53542410-53542429 | Msa0077090:intron | 45.0% |
| ! | AGGTGGGTATTTTCTCAGGT+GGG | - | chr1_2:53542414-53542433 | Msa0077090:intron | 45.0% |
| !! | ATTGGTGTCGGCATCTCTAT+TGG | + | chr1_2:53542524-53542543 | None:intergenic | 45.0% |
| GGAAACTCATCCATTGGTGT+CGG | + | chr1_2:53542554-53542573 | None:intergenic | 45.0% | |
| CCAAGACCTATCTCATTGCT+TGG | + | chr1_2:53542671-53542690 | None:intergenic | 45.0% | |
| CCAAGCAATGAGATAGGTCT+TGG | - | chr1_2:53542668-53542687 | Msa0077090:CDS | 45.0% | |
| GAAACTCAAGTTTGGCGCAA+AGG | - | chr1_2:53541125-53541144 | Msa0077090:CDS | 45.0% | |
| CACAATATTGGCGTCTCGTA+TGG | + | chr1_2:53541152-53541171 | None:intergenic | 45.0% | |
| CTTCGGGAGATAGTTAGCAA+GGG | + | chr1_2:53541210-53541229 | None:intergenic | 45.0% | |
| TCTTCGGGAGATAGTTAGCA+AGG | + | chr1_2:53541211-53541230 | None:intergenic | 45.0% | |
| ! | TGATTTTGCAGGGCTCTCTT+CGG | + | chr1_2:53541227-53541246 | None:intergenic | 45.0% |
| AGCCCTGCAAAATCAGTCAT+CGG | - | chr1_2:53541232-53541251 | Msa0077090:CDS | 45.0% | |
| !! | GTCCGATGACTGATTTTGCA+GGG | + | chr1_2:53541237-53541256 | None:intergenic | 45.0% |
| ! | CGCTGCTAAAGTTTTCTACG+GGG | + | chr1_2:53542015-53542034 | None:intergenic | 45.0% |
| TGAGAGTTGTCGTTGCAATG+TGG | - | chr1_2:53542080-53542099 | Msa0077090:intron | 45.0% | |
| ! | TCTCAGGTGGGTATTTTCTC+AGG | - | chr1_2:53542410-53542429 | Msa0077090:intron | 45.0% |
| ! | AGGTGGGTATTTTCTCAGGT+GGG | - | chr1_2:53542414-53542433 | Msa0077090:intron | 45.0% |
| !! | ATTGGTGTCGGCATCTCTAT+TGG | + | chr1_2:53542524-53542543 | None:intergenic | 45.0% |
| GGAAACTCATCCATTGGTGT+CGG | + | chr1_2:53542554-53542573 | None:intergenic | 45.0% | |
| CCAAGACCTATCTCATTGCT+TGG | + | chr1_2:53542671-53542690 | None:intergenic | 45.0% | |
| CCAAGCAATGAGATAGGTCT+TGG | - | chr1_2:53542668-53542687 | Msa0077090:CDS | 45.0% | |
| ! | GATTTTGCAGGGCTCTCTTC+GGG | + | chr1_2:53541226-53541245 | None:intergenic | 50.0% |
| !! | GGTCCGATGACTGATTTTGC+AGG | + | chr1_2:53541238-53541257 | None:intergenic | 50.0% |
| AATTTGTCCGGTCCCGACTT+GGG | + | chr1_2:53541682-53541701 | None:intergenic | 50.0% | |
| AAATTTGTCCGGTCCCGACT+TGG | + | chr1_2:53541683-53541702 | None:intergenic | 50.0% | |
| ! | CAGGTGGGTATTTTCTCAGG+TGG | - | chr1_2:53542413-53542432 | Msa0077090:intron | 50.0% |
| !! | ATTGGTGTCGGCGTCTCTAT+TGG | + | chr1_2:53542542-53542561 | None:intergenic | 50.0% |
| AATAGAGACGCCGACACCAA+TGG | - | chr1_2:53542541-53542560 | Msa0077090:intron | 50.0% | |
| ! | GATTTTGCAGGGCTCTCTTC+GGG | + | chr1_2:53541226-53541245 | None:intergenic | 50.0% |
| !! | GGTCCGATGACTGATTTTGC+AGG | + | chr1_2:53541238-53541257 | None:intergenic | 50.0% |
| AATTTGTCCGGTCCCGACTT+GGG | + | chr1_2:53541682-53541701 | None:intergenic | 50.0% | |
| AAATTTGTCCGGTCCCGACT+TGG | + | chr1_2:53541683-53541702 | None:intergenic | 50.0% | |
| ! | CAGGTGGGTATTTTCTCAGG+TGG | - | chr1_2:53542413-53542432 | Msa0077090:intron | 50.0% |
| !! | ATTGGTGTCGGCGTCTCTAT+TGG | + | chr1_2:53542542-53542561 | None:intergenic | 50.0% |
| AATAGAGACGCCGACACCAA+TGG | - | chr1_2:53542541-53542560 | Msa0077090:intron | 50.0% | |
| GTCGGCGTCTCTATTGGTGT+CGG | + | chr1_2:53542536-53542555 | None:intergenic | 55.0% | |
| GTCGGCGTCTCTATTGGTGT+CGG | + | chr1_2:53542536-53542555 | None:intergenic | 55.0% | |
| ACATTGGCCCAAGTCGGGAC+CGG | - | chr1_2:53541672-53541691 | Msa0077090:intron | 60.0% | |
| ACATTGGCCCAAGTCGGGAC+CGG | - | chr1_2:53541672-53541691 | Msa0077090:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 53541113 | 53542739 | 53541113 | ID=Msa0077090;Name=Msa0077090 |
| chr1_2 | mRNA | 53541113 | 53542739 | 53541113 | ID=Msa0077090-mRNA-1;Parent=Msa0077090;Name=Msa0077090-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0|0|1|1|1|2|0|167 |
| chr1_2 | exon | 53542560 | 53542739 | 53542560 | ID=Msa0077090-mRNA-1:exon:16614;Parent=Msa0077090-mRNA-1 |
| chr1_2 | exon | 53541113 | 53541436 | 53541113 | ID=Msa0077090-mRNA-1:exon:16613;Parent=Msa0077090-mRNA-1 |
| chr1_2 | CDS | 53542560 | 53542739 | 53542560 | ID=Msa0077090-mRNA-1:cds;Parent=Msa0077090-mRNA-1 |
| chr1_2 | CDS | 53541113 | 53541436 | 53541113 | ID=Msa0077090-mRNA-1:cds;Parent=Msa0077090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
