Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0078270 | sp|Q9SZL8|FRS5_ARATH | 44.186 | 86 | 47 | 1 | 103 | 188 | 431 | 515 | 3.54e-18 | 89.4 |
| Msa0078270 | sp|Q9SZL8|FRS5_ARATH | 48.980 | 49 | 25 | 0 | 198 | 246 | 591 | 639 | 9.97e-12 | 69.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0078270 | A0A2K3L9Y4 | 66.544 | 272 | 25 | 3 | 113 | 318 | 351 | 622 | 4.58e-105 | 333 |
| Msa0078270 | A0A2K3L9Y4 | 84.746 | 118 | 1 | 1 | 12 | 112 | 5 | 122 | 8.31e-52 | 192 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0078270 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0078270 | MtrunA17_Chr1g0196541 | 53.947 | 76 | 35 | 0 | 113 | 188 | 356 | 431 | 1.70e-21 | 95.9 |
| Msa0078270 | MtrunA17_Chr5g0441581 | 51.163 | 86 | 41 | 1 | 103 | 188 | 375 | 459 | 2.33e-21 | 95.1 |
| Msa0078270 | MtrunA17_Chr2g0296781 | 53.947 | 76 | 35 | 0 | 113 | 188 | 356 | 431 | 1.64e-20 | 92.8 |
| Msa0078270 | MtrunA17_Chr6g0477261 | 52.632 | 76 | 36 | 0 | 113 | 188 | 245 | 320 | 3.72e-20 | 91.7 |
| Msa0078270 | MtrunA17_Chr5g0448511 | 35.897 | 117 | 74 | 1 | 198 | 313 | 354 | 470 | 5.76e-19 | 87.8 |
| Msa0078270 | MtrunA17_Chr5g0448511 | 39.080 | 87 | 52 | 1 | 102 | 188 | 193 | 278 | 5.16e-15 | 75.9 |
| Msa0078270 | MtrunA17_Chr5g0448761 | 38.144 | 97 | 59 | 1 | 103 | 199 | 422 | 517 | 7.52e-19 | 87.8 |
| Msa0078270 | MtrunA17_Chr5g0448761 | 40.541 | 111 | 62 | 3 | 198 | 305 | 582 | 691 | 1.53e-15 | 77.8 |
| Msa0078270 | MtrunA17_Chr1g0202341 | 40.708 | 113 | 51 | 2 | 80 | 182 | 378 | 484 | 1.88e-18 | 86.7 |
| Msa0078270 | MtrunA17_Chr1g0202341 | 37.097 | 124 | 62 | 3 | 195 | 309 | 563 | 679 | 3.71e-13 | 70.5 |
| Msa0078270 | MtrunA17_Chr5g0440451 | 40.952 | 105 | 61 | 1 | 198 | 302 | 561 | 664 | 3.88e-15 | 76.6 |
| Msa0078270 | MtrunA17_Chr3g0080351 | 31.858 | 113 | 73 | 2 | 104 | 216 | 422 | 530 | 2.79e-14 | 73.9 |
| Msa0078270 | MtrunA17_Chr2g0291581 | 31.538 | 130 | 85 | 2 | 70 | 196 | 375 | 503 | 1.14e-13 | 72.0 |
| Msa0078270 | MtrunA17_Chr1g0207551 | 24.737 | 190 | 78 | 3 | 116 | 240 | 399 | 588 | 2.06e-13 | 71.2 |
| Msa0078270 | MtrunA17_Chr2g0287061 | 39.806 | 103 | 54 | 3 | 199 | 298 | 659 | 756 | 4.54e-13 | 70.5 |
| Msa0078270 | MtrunA17_Chr3g0118611 | 35.238 | 105 | 67 | 1 | 198 | 302 | 458 | 561 | 2.12e-11 | 65.1 |
| Msa0078270 | MtrunA17_Chr2g0329031 | 31.034 | 87 | 59 | 1 | 104 | 190 | 361 | 446 | 8.81e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0078270 | AT4G38180.1 | 44.186 | 86 | 47 | 1 | 103 | 188 | 431 | 515 | 3.60e-19 | 89.4 |
| Msa0078270 | AT4G38180.1 | 48.980 | 49 | 25 | 0 | 198 | 246 | 591 | 639 | 1.01e-12 | 69.7 |
| Msa0078270 | AT1G76320.1 | 25.500 | 200 | 85 | 3 | 104 | 240 | 345 | 543 | 2.00e-17 | 84.0 |
| Msa0078270 | AT1G76320.4 | 25.500 | 200 | 85 | 3 | 104 | 240 | 345 | 543 | 2.00e-17 | 84.0 |
| Msa0078270 | AT1G76320.2 | 25.500 | 200 | 85 | 3 | 104 | 240 | 345 | 543 | 2.11e-17 | 84.0 |
| Msa0078270 | AT1G76320.3 | 25.500 | 200 | 85 | 3 | 104 | 240 | 345 | 543 | 3.07e-17 | 83.2 |
| Msa0078270 | AT4G38170.1 | 40.777 | 103 | 56 | 3 | 198 | 298 | 356 | 455 | 8.66e-16 | 79.0 |
| Msa0078270 | AT4G38170.1 | 34.653 | 101 | 65 | 1 | 99 | 199 | 192 | 291 | 4.83e-15 | 76.6 |
| Msa0078270 | AT3G22170.2 | 40.000 | 75 | 45 | 0 | 113 | 187 | 425 | 499 | 4.42e-15 | 77.0 |
| Msa0078270 | AT3G22170.2 | 42.254 | 71 | 36 | 1 | 175 | 240 | 547 | 617 | 7.23e-11 | 63.9 |
| Msa0078270 | AT3G22170.1 | 40.000 | 75 | 45 | 0 | 113 | 187 | 425 | 499 | 4.42e-15 | 77.0 |
| Msa0078270 | AT3G22170.1 | 42.254 | 71 | 36 | 1 | 175 | 240 | 547 | 617 | 7.23e-11 | 63.9 |
| Msa0078270 | AT4G15090.1 | 37.500 | 88 | 54 | 1 | 104 | 191 | 408 | 494 | 7.94e-15 | 76.3 |
| Msa0078270 | AT4G15090.5 | 37.500 | 88 | 54 | 1 | 104 | 191 | 408 | 494 | 7.94e-15 | 76.3 |
| Msa0078270 | AT4G15090.3 | 37.500 | 88 | 54 | 1 | 104 | 191 | 408 | 494 | 7.94e-15 | 76.3 |
| Msa0078270 | AT4G15090.2 | 37.500 | 88 | 54 | 1 | 104 | 191 | 408 | 494 | 7.94e-15 | 76.3 |
| Msa0078270 | AT4G15090.4 | 37.500 | 88 | 54 | 1 | 104 | 191 | 408 | 494 | 7.94e-15 | 76.3 |
| Msa0078270 | AT2G32250.5 | 23.308 | 266 | 134 | 6 | 103 | 303 | 351 | 611 | 8.93e-14 | 72.8 |
| Msa0078270 | AT2G32250.6 | 23.308 | 266 | 134 | 6 | 103 | 303 | 351 | 611 | 9.06e-14 | 72.8 |
| Msa0078270 | AT2G32250.1 | 23.308 | 266 | 134 | 6 | 103 | 303 | 351 | 611 | 9.06e-14 | 72.8 |
| Msa0078270 | AT2G32250.3 | 23.308 | 266 | 134 | 6 | 103 | 303 | 351 | 611 | 9.06e-14 | 72.8 |
| Msa0078270 | AT2G32250.2 | 23.308 | 266 | 134 | 6 | 103 | 303 | 351 | 611 | 9.13e-14 | 72.8 |
| Msa0078270 | AT2G32250.4 | 23.308 | 266 | 134 | 6 | 103 | 303 | 351 | 611 | 9.13e-14 | 72.8 |
| Msa0078270 | AT2G32250.8 | 23.308 | 266 | 134 | 6 | 103 | 303 | 310 | 570 | 1.02e-13 | 72.8 |
| Msa0078270 | AT2G32250.7 | 23.308 | 266 | 134 | 6 | 103 | 303 | 310 | 570 | 1.07e-13 | 72.8 |
| Msa0078270 | AT3G06250.2 | 36.634 | 101 | 62 | 1 | 198 | 298 | 661 | 759 | 4.73e-13 | 70.9 |
| Msa0078270 | AT3G06250.1 | 36.634 | 101 | 62 | 1 | 198 | 298 | 661 | 759 | 4.73e-13 | 70.9 |
| Msa0078270 | AT3G06250.3 | 36.634 | 101 | 62 | 1 | 198 | 298 | 661 | 759 | 4.73e-13 | 70.9 |
| Msa0078270 | AT4G19990.6 | 22.749 | 211 | 96 | 3 | 113 | 256 | 364 | 574 | 2.62e-12 | 68.6 |
| Msa0078270 | AT4G19990.2 | 22.749 | 211 | 96 | 3 | 113 | 256 | 364 | 574 | 2.62e-12 | 68.6 |
| Msa0078270 | AT4G19990.5 | 22.749 | 211 | 96 | 3 | 113 | 256 | 364 | 574 | 2.86e-12 | 68.2 |
| Msa0078270 | AT4G19990.1 | 22.749 | 211 | 96 | 3 | 113 | 256 | 307 | 517 | 2.89e-12 | 68.2 |
| Msa0078270 | AT4G19990.3 | 22.749 | 211 | 96 | 3 | 113 | 256 | 364 | 574 | 2.97e-12 | 68.2 |
| Msa0078270 | AT4G19990.4 | 22.749 | 211 | 96 | 3 | 113 | 256 | 364 | 574 | 2.97e-12 | 68.2 |
| Msa0078270 | AT4G19990.7 | 22.749 | 211 | 96 | 3 | 113 | 256 | 378 | 588 | 3.01e-12 | 68.2 |
| Msa0078270 | AT5G18960.2 | 36.634 | 101 | 62 | 1 | 198 | 298 | 685 | 783 | 3.16e-12 | 68.2 |
| Msa0078270 | AT5G18960.1 | 36.634 | 101 | 62 | 1 | 198 | 298 | 685 | 783 | 3.16e-12 | 68.2 |
| Msa0078270 | AT2G27110.2 | 32.075 | 106 | 68 | 2 | 198 | 302 | 536 | 638 | 3.16e-12 | 68.2 |
| Msa0078270 | AT2G27110.2 | 37.209 | 86 | 51 | 2 | 103 | 188 | 378 | 460 | 1.24e-11 | 66.2 |
| Msa0078270 | AT2G27110.1 | 32.075 | 106 | 68 | 2 | 198 | 302 | 536 | 638 | 3.16e-12 | 68.2 |
| Msa0078270 | AT2G27110.1 | 37.209 | 86 | 51 | 2 | 103 | 188 | 378 | 460 | 1.24e-11 | 66.2 |
| Msa0078270 | AT2G27110.3 | 32.075 | 106 | 68 | 2 | 198 | 302 | 391 | 493 | 3.99e-12 | 67.8 |
| Msa0078270 | AT2G27110.3 | 37.209 | 86 | 51 | 2 | 103 | 188 | 233 | 315 | 1.10e-11 | 66.6 |
| Msa0078270 | AT1G52520.1 | 36.364 | 77 | 49 | 0 | 113 | 189 | 436 | 512 | 1.01e-11 | 66.6 |
Find 46 sgRNAs with CRISPR-Local
Find 298 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTCCAAATCCTTCTTTCT+TGG | 0.222792 | 1_2:+55659500 | None:intergenic |
| AAGGAGAATGAATGGCTTAA+AGG | 0.244725 | 1_2:-55658502 | Msa0078270:CDS |
| AAGCAGGGAAGAGAAGTAAA+TGG | 0.304863 | 1_2:-55659335 | Msa0078270:CDS |
| CGCAGATAGGCCACACTCTT+AGG | 0.314469 | 1_2:+55659267 | None:intergenic |
| AATTTATGGGATTGCTATGT+AGG | 0.326606 | 1_2:-55658021 | Msa0078270:CDS |
| TAAGCTGATATCATCTGATT+TGG | 0.331906 | 1_2:-55657783 | Msa0078270:CDS |
| TCAATCAAAGAGATTCAAAA+TGG | 0.352627 | 1_2:-55657642 | Msa0078270:CDS |
| GGGAGTGGATCTCTGATAAT+TGG | 0.364089 | 1_2:+55657693 | None:intergenic |
| TTTGCCAAGAAAGAAGGATT+TGG | 0.365412 | 1_2:-55659504 | Msa0078270:CDS |
| TTTCTTTCTTTAGTTTGTGA+TGG | 0.379671 | 1_2:+55657672 | None:intergenic |
| TTCTTTCTTTAGTTTGTGAT+GGG | 0.400586 | 1_2:+55657673 | None:intergenic |
| CGCTTTAAAATATACATGTC+TGG | 0.419734 | 1_2:+55657956 | None:intergenic |
| AGGAGAATGAATGGCTTAAA+GGG | 0.425174 | 1_2:-55658501 | Msa0078270:CDS |
| ATAATTTGAAGGAGAATGAA+TGG | 0.429066 | 1_2:-55658510 | Msa0078270:intron |
| AAAGTGCTTCTGTTGAAAAC+AGG | 0.437656 | 1_2:+55658451 | None:intergenic |
| GAAGGTACACATATAGTAAA+GGG | 0.439216 | 1_2:-55659429 | Msa0078270:intron |
| TCTTTAGTTTGTGATGGGAG+TGG | 0.447487 | 1_2:+55657678 | None:intergenic |
| TCACTTACTGTTTCAAAAGC+AGG | 0.452498 | 1_2:-55659351 | Msa0078270:CDS |
| ATAAACAATGTTCATAATCA+TGG | 0.455589 | 1_2:-55659300 | Msa0078270:CDS |
| ACATCGTTTGCCAAGAAAGA+AGG | 0.463881 | 1_2:-55659510 | Msa0078270:CDS |
| GTTGAGAAGTTTGATGAAGA+AGG | 0.472036 | 1_2:-55659207 | Msa0078270:CDS |
| GGACCAGAGTCTTCCTCTAC+AGG | 0.475137 | 1_2:-55657890 | Msa0078270:CDS |
| GCTGATATCATCTGATTTGG+AGG | 0.486826 | 1_2:-55657780 | Msa0078270:CDS |
| AGCAGGGAAGAGAAGTAAAT+GGG | 0.489503 | 1_2:-55659334 | Msa0078270:CDS |
| TGAAGGTACACATATAGTAA+AGG | 0.494494 | 1_2:-55659430 | Msa0078270:intron |
| GGTGCTGTGTTTATTGAAGA+TGG | 0.495192 | 1_2:-55657911 | Msa0078270:CDS |
| GTAAAGGGTGAAAATGAAGA+AGG | 0.507431 | 1_2:-55659414 | Msa0078270:CDS |
| TTTCTTATGAGACCGCAGAT+AGG | 0.520274 | 1_2:+55659254 | None:intergenic |
| AGTTAAATTTGACAAGGCAA+TGG | 0.535325 | 1_2:-55658335 | Msa0078270:CDS |
| TGCTTTACAATCAGTTCTTG+AGG | 0.537334 | 1_2:+55659374 | None:intergenic |
| TGTACGATATAAGAAAATCA+TGG | 0.540635 | 1_2:-55658477 | Msa0078270:CDS |
| CACTTACTGTTTCAAAAGCA+GGG | 0.542698 | 1_2:-55659350 | Msa0078270:CDS |
| TCAAAGAGATTCAAAATGGA+AGG | 0.546075 | 1_2:-55657638 | Msa0078270:CDS |
| ATTGCTATGTAGGCATATCT+TGG | 0.547174 | 1_2:-55658011 | Msa0078270:CDS |
| TAAAGGGTGAAAATGAAGAA+GGG | 0.554329 | 1_2:-55659413 | Msa0078270:CDS |
| CAATGTTCATAATCATGGAA+TGG | 0.563943 | 1_2:-55659295 | Msa0078270:CDS |
| AGTTGATGAGTTTCCTGTAG+AGG | 0.572088 | 1_2:+55657877 | None:intergenic |
| CCTTTGTGTAGTGTTCATGC+CGG | 0.583834 | 1_2:+55658423 | None:intergenic |
| TTTCCTGTAGAGGAAGACTC+TGG | 0.627574 | 1_2:+55657887 | None:intergenic |
| CTTCATCAAACTTCTCAACG+AGG | 0.637235 | 1_2:+55659211 | None:intergenic |
| CTAAGAGTGTGGCCTATCTG+CGG | 0.648365 | 1_2:-55659266 | Msa0078270:CDS |
| GTACATGGATAATGAGTGTG+TGG | 0.666454 | 1_2:-55659565 | Msa0078270:CDS |
| TGGACAAAGGATGCTAACAA+AGG | 0.673725 | 1_2:-55657932 | Msa0078270:CDS |
| AATGGTTAGTCCTAAGAGTG+TGG | 0.677899 | 1_2:-55659277 | Msa0078270:CDS |
| CCGGCATGAACACTACACAA+AGG | 0.746468 | 1_2:-55658423 | Msa0078270:CDS |
| GTGTGTGGAAAATTCCACTG+CGG | 0.854331 | 1_2:-55659550 | Msa0078270:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAACAGAAAATAATA+TGG | + | chr1_2:55657942-55657961 | None:intergenic | 10.0% |
| !!! | TTTATTTTTTTATATCCTAT+AGG | - | chr1_2:55658027-55658046 | Msa0078270:CDS | 10.0% |
| !! | TTATAAAGATTATTCAATTT+AGG | - | chr1_2:55659440-55659459 | Msa0078270:intron | 10.0% |
| !! | AAAAAAAACAGAAAATAATA+TGG | + | chr1_2:55657942-55657961 | None:intergenic | 10.0% |
| !!! | TTTATTTTTTTATATCCTAT+AGG | - | chr1_2:55658027-55658046 | Msa0078270:CDS | 10.0% |
| !! | TTATAAAGATTATTCAATTT+AGG | - | chr1_2:55659440-55659459 | Msa0078270:intron | 10.0% |
| !!! | CAATGAAAGTATTTAATTAT+GGG | + | chr1_2:55657895-55657914 | None:intergenic | 15.0% |
| !!! | ACAATGAAAGTATTTAATTA+TGG | + | chr1_2:55657896-55657915 | None:intergenic | 15.0% |
| !! | TGTATTGCATAAAAAAAATT+GGG | + | chr1_2:55658593-55658612 | None:intergenic | 15.0% |
| !! | TTGTATTGCATAAAAAAAAT+TGG | + | chr1_2:55658594-55658613 | None:intergenic | 15.0% |
| !! | ATTAACAAAAGAATCAAAAA+AGG | + | chr1_2:55659233-55659252 | None:intergenic | 15.0% |
| !!! | ATATATACAAGAAACATTTT+TGG | - | chr1_2:55659400-55659419 | Msa0078270:CDS | 15.0% |
| !!! | TATATACAAGAAACATTTTT+GGG | - | chr1_2:55659401-55659420 | Msa0078270:CDS | 15.0% |
| !!! | CAATGAAAGTATTTAATTAT+GGG | + | chr1_2:55657895-55657914 | None:intergenic | 15.0% |
| !!! | ACAATGAAAGTATTTAATTA+TGG | + | chr1_2:55657896-55657915 | None:intergenic | 15.0% |
| !! | TGTATTGCATAAAAAAAATT+GGG | + | chr1_2:55658593-55658612 | None:intergenic | 15.0% |
| !! | TTGTATTGCATAAAAAAAAT+TGG | + | chr1_2:55658594-55658613 | None:intergenic | 15.0% |
| !! | ATTAACAAAAGAATCAAAAA+AGG | + | chr1_2:55659233-55659252 | None:intergenic | 15.0% |
| !!! | ATATATACAAGAAACATTTT+TGG | - | chr1_2:55659400-55659419 | Msa0078270:CDS | 15.0% |
| !!! | TATATACAAGAAACATTTTT+GGG | - | chr1_2:55659401-55659420 | Msa0078270:CDS | 15.0% |
| !! | TAAAGACAAATAAAAGAACA+TGG | + | chr1_2:55657848-55657867 | None:intergenic | 20.0% |
| !! | ATAAACAATGTTCATAATCA+TGG | - | chr1_2:55658314-55658333 | Msa0078270:CDS | 20.0% |
| !! | ATAGAATGATAAATTTCTTC+TGG | - | chr1_2:55658627-55658646 | Msa0078270:intron | 20.0% |
| !! | TAGAATGATAAATTTCTTCT+GGG | - | chr1_2:55658628-55658647 | Msa0078270:intron | 20.0% |
| !!! | CATTTTCAATCTATCTTATT+TGG | - | chr1_2:55658767-55658786 | Msa0078270:intron | 20.0% |
| !! | AATGGTTGATTATAATTTGA+AGG | - | chr1_2:55659093-55659112 | Msa0078270:intron | 20.0% |
| !!! | TTTTGTAGTTAAATTTGACA+AGG | - | chr1_2:55659273-55659292 | Msa0078270:CDS | 20.0% |
| !! | TAAAGATTATTCAATTTAGG+AGG | - | chr1_2:55659443-55659462 | Msa0078270:intron | 20.0% |
| !! | AAAGATTATTCAATTTAGGA+GGG | - | chr1_2:55659444-55659463 | Msa0078270:intron | 20.0% |
| !!! | ATACAAAAAAGCTTTGATAA+TGG | - | chr1_2:55659861-55659880 | Msa0078270:intron | 20.0% |
| !! | TAAAGACAAATAAAAGAACA+TGG | + | chr1_2:55657848-55657867 | None:intergenic | 20.0% |
| !! | ATAAACAATGTTCATAATCA+TGG | - | chr1_2:55658314-55658333 | Msa0078270:CDS | 20.0% |
| !! | ATAGAATGATAAATTTCTTC+TGG | - | chr1_2:55658627-55658646 | Msa0078270:intron | 20.0% |
| !! | TAGAATGATAAATTTCTTCT+GGG | - | chr1_2:55658628-55658647 | Msa0078270:intron | 20.0% |
| !!! | CATTTTCAATCTATCTTATT+TGG | - | chr1_2:55658767-55658786 | Msa0078270:intron | 20.0% |
| !! | AATGGTTGATTATAATTTGA+AGG | - | chr1_2:55659093-55659112 | Msa0078270:intron | 20.0% |
| !!! | TTTTGTAGTTAAATTTGACA+AGG | - | chr1_2:55659273-55659292 | Msa0078270:CDS | 20.0% |
| !! | TAAAGATTATTCAATTTAGG+AGG | - | chr1_2:55659443-55659462 | Msa0078270:intron | 20.0% |
| !! | AAAGATTATTCAATTTAGGA+GGG | - | chr1_2:55659444-55659463 | Msa0078270:intron | 20.0% |
| !!! | ATACAAAAAAGCTTTGATAA+TGG | - | chr1_2:55659861-55659880 | Msa0078270:intron | 20.0% |
| ! | ATTTAATTATGGGAGAAACA+TGG | + | chr1_2:55657885-55657904 | None:intergenic | 25.0% |
| ! | AATACTTTCATTGTTCATTG+AGG | - | chr1_2:55657902-55657921 | Msa0078270:CDS | 25.0% |
| !! | TTTTATATCCTATAGGTACA+TGG | - | chr1_2:55658034-55658053 | Msa0078270:CDS | 25.0% |
| !!! | AAGATAATGCTTTTTCTAGT+CGG | - | chr1_2:55658468-55658487 | Msa0078270:CDS | 25.0% |
| !!! | TTCTTCTGAAATTTCTAAGA+TGG | + | chr1_2:55658505-55658524 | None:intergenic | 25.0% |
| ! | TTGAAAATGATGATTCAATC+CGG | + | chr1_2:55658756-55658775 | None:intergenic | 25.0% |
| ! | AATAATAACAGATCAAGACT+TGG | - | chr1_2:55658880-55658899 | Msa0078270:intron | 25.0% |
| !! | TGAATTTTTGTGGTATATGT+GGG | + | chr1_2:55658996-55659015 | None:intergenic | 25.0% |
| !! | TTGAATTTTTGTGGTATATG+TGG | + | chr1_2:55658997-55659016 | None:intergenic | 25.0% |
| !! | TCTTCAAAGTATTCTATAGA+TGG | + | chr1_2:55659058-55659077 | None:intergenic | 25.0% |
| !! | TAGAATACTTTGAAGAAGAA+TGG | - | chr1_2:55659062-55659081 | Msa0078270:intron | 25.0% |
| !! | AGAATACTTTGAAGAAGAAT+GGG | - | chr1_2:55659063-55659082 | Msa0078270:intron | 25.0% |
| ! | ATAATTTGAAGGAGAATGAA+TGG | - | chr1_2:55659104-55659123 | Msa0078270:intron | 25.0% |
| ! | TGTACGATATAAGAAAATCA+TGG | - | chr1_2:55659137-55659156 | Msa0078270:intron | 25.0% |
| ! | AGTTGTTAAGTCAAAAATTG+AGG | - | chr1_2:55659363-55659382 | Msa0078270:CDS | 25.0% |
| !!! | ACATGTATATTTTAAAGCGT+TGG | - | chr1_2:55659662-55659681 | Msa0078270:intron | 25.0% |
| !!! | TTCTTTCTTTAGTTTGTGAT+GGG | + | chr1_2:55659944-55659963 | None:intergenic | 25.0% |
| !!! | TTTCTTTCTTTAGTTTGTGA+TGG | + | chr1_2:55659945-55659964 | None:intergenic | 25.0% |
| ! | TCAATCAAAGAGATTCAAAA+TGG | - | chr1_2:55659972-55659991 | Msa0078270:intron | 25.0% |
| ! | ATTTAATTATGGGAGAAACA+TGG | + | chr1_2:55657885-55657904 | None:intergenic | 25.0% |
| ! | AATACTTTCATTGTTCATTG+AGG | - | chr1_2:55657902-55657921 | Msa0078270:CDS | 25.0% |
| !! | TTTTATATCCTATAGGTACA+TGG | - | chr1_2:55658034-55658053 | Msa0078270:CDS | 25.0% |
| !!! | AAGATAATGCTTTTTCTAGT+CGG | - | chr1_2:55658468-55658487 | Msa0078270:CDS | 25.0% |
| !!! | TTCTTCTGAAATTTCTAAGA+TGG | + | chr1_2:55658505-55658524 | None:intergenic | 25.0% |
| ! | TTGAAAATGATGATTCAATC+CGG | + | chr1_2:55658756-55658775 | None:intergenic | 25.0% |
| ! | AATAATAACAGATCAAGACT+TGG | - | chr1_2:55658880-55658899 | Msa0078270:intron | 25.0% |
| !! | TGAATTTTTGTGGTATATGT+GGG | + | chr1_2:55658996-55659015 | None:intergenic | 25.0% |
| !! | TTGAATTTTTGTGGTATATG+TGG | + | chr1_2:55658997-55659016 | None:intergenic | 25.0% |
| !! | TCTTCAAAGTATTCTATAGA+TGG | + | chr1_2:55659058-55659077 | None:intergenic | 25.0% |
| !! | TAGAATACTTTGAAGAAGAA+TGG | - | chr1_2:55659062-55659081 | Msa0078270:intron | 25.0% |
| !! | AGAATACTTTGAAGAAGAAT+GGG | - | chr1_2:55659063-55659082 | Msa0078270:intron | 25.0% |
| ! | ATAATTTGAAGGAGAATGAA+TGG | - | chr1_2:55659104-55659123 | Msa0078270:intron | 25.0% |
| ! | TGTACGATATAAGAAAATCA+TGG | - | chr1_2:55659137-55659156 | Msa0078270:intron | 25.0% |
| ! | AGTTGTTAAGTCAAAAATTG+AGG | - | chr1_2:55659363-55659382 | Msa0078270:CDS | 25.0% |
| !!! | ACATGTATATTTTAAAGCGT+TGG | - | chr1_2:55659662-55659681 | Msa0078270:intron | 25.0% |
| !!! | TTCTTTCTTTAGTTTGTGAT+GGG | + | chr1_2:55659944-55659963 | None:intergenic | 25.0% |
| !!! | TTTCTTTCTTTAGTTTGTGA+TGG | + | chr1_2:55659945-55659964 | None:intergenic | 25.0% |
| ! | TCAATCAAAGAGATTCAAAA+TGG | - | chr1_2:55659972-55659991 | Msa0078270:intron | 25.0% |
| TTGTCTTTCACGTGTTAATA+GGG | - | chr1_2:55657812-55657831 | Msa0078270:CDS | 30.0% | |
| AGACAAATAAAAGAACATGG+TGG | + | chr1_2:55657845-55657864 | None:intergenic | 30.0% | |
| AAACAGAAAATAATATGGCG+TGG | + | chr1_2:55657937-55657956 | None:intergenic | 30.0% | |
| TCATGAATGCTCATTATTCA+TGG | - | chr1_2:55657999-55658018 | Msa0078270:CDS | 30.0% | |
| ! | TGAAGGTACACATATAGTAA+AGG | - | chr1_2:55658184-55658203 | Msa0078270:intron | 30.0% |
| ! | GAAGGTACACATATAGTAAA+GGG | - | chr1_2:55658185-55658204 | Msa0078270:intron | 30.0% |
| TAAAGGGTGAAAATGAAGAA+GGG | - | chr1_2:55658201-55658220 | Msa0078270:intron | 30.0% | |
| CAATGTTCATAATCATGGAA+TGG | - | chr1_2:55658319-55658338 | Msa0078270:CDS | 30.0% | |
| AAAGTTGCTACAATGTTTCA+GGG | - | chr1_2:55658443-55658462 | Msa0078270:CDS | 30.0% | |
| !!! | AGATAATGCTTTTTCTAGTC+GGG | - | chr1_2:55658469-55658488 | Msa0078270:CDS | 30.0% |
| AGAAGAAGAAATCTTGATGT+GGG | - | chr1_2:55658518-55658537 | Msa0078270:intron | 30.0% | |
| AATGATAAATTTCTTCTGGG+TGG | - | chr1_2:55658631-55658650 | Msa0078270:intron | 30.0% | |
| AAATGGCATATCATACTTGT+TGG | + | chr1_2:55658723-55658742 | None:intergenic | 30.0% | |
| TGATCTGTTATTATTGACAC+TGG | + | chr1_2:55658875-55658894 | None:intergenic | 30.0% | |
| TTATGTGCCATAAACATAAC+CGG | + | chr1_2:55658949-55658968 | None:intergenic | 30.0% | |
| ! | GCTTGAAAGTTGAATTTTTG+TGG | + | chr1_2:55659006-55659025 | None:intergenic | 30.0% |
| AGAAGAATGGGAATGTATAA+TGG | - | chr1_2:55659075-55659094 | Msa0078270:intron | 30.0% | |
| AGTTAAATTTGACAAGGCAA+TGG | - | chr1_2:55659279-55659298 | Msa0078270:CDS | 30.0% | |
| AGGGAAAAACTTGAAAAAGA+AGG | - | chr1_2:55659463-55659482 | Msa0078270:intron | 30.0% | |
| GGGAAAAACTTGAAAAAGAA+GGG | - | chr1_2:55659464-55659483 | Msa0078270:intron | 30.0% | |
| AGGGTCTCAGTATATATATA+AGG | - | chr1_2:55659483-55659502 | Msa0078270:intron | 30.0% | |
| ! | ATTCATAGTTTGTGTGGATT+TGG | - | chr1_2:55659534-55659553 | Msa0078270:CDS | 30.0% |
| !!! | TGCCAGCTTTTTCAATTTAT+GGG | - | chr1_2:55659580-55659599 | Msa0078270:intron | 30.0% |
| ATCCCATAAATTGAAAAAGC+TGG | + | chr1_2:55659585-55659604 | None:intergenic | 30.0% | |
| AATTTATGGGATTGCTATGT+AGG | - | chr1_2:55659593-55659612 | Msa0078270:intron | 30.0% | |
| !! | CGCTTTAAAATATACATGTC+TGG | + | chr1_2:55659661-55659680 | None:intergenic | 30.0% |
| !!! | TATTTTAAAGCGTTGGACAA+AGG | - | chr1_2:55659669-55659688 | Msa0078270:intron | 30.0% |
| TAAGCTGATATCATCTGATT+TGG | - | chr1_2:55659831-55659850 | Msa0078270:intron | 30.0% | |
| TCAAAGAGATTCAAAATGGA+AGG | - | chr1_2:55659976-55659995 | Msa0078270:intron | 30.0% | |
| TTGTCTTTCACGTGTTAATA+GGG | - | chr1_2:55657812-55657831 | Msa0078270:CDS | 30.0% | |
| AGACAAATAAAAGAACATGG+TGG | + | chr1_2:55657845-55657864 | None:intergenic | 30.0% | |
| AAACAGAAAATAATATGGCG+TGG | + | chr1_2:55657937-55657956 | None:intergenic | 30.0% | |
| TCATGAATGCTCATTATTCA+TGG | - | chr1_2:55657999-55658018 | Msa0078270:CDS | 30.0% | |
| ! | TGAAGGTACACATATAGTAA+AGG | - | chr1_2:55658184-55658203 | Msa0078270:intron | 30.0% |
| ! | GAAGGTACACATATAGTAAA+GGG | - | chr1_2:55658185-55658204 | Msa0078270:intron | 30.0% |
| TAAAGGGTGAAAATGAAGAA+GGG | - | chr1_2:55658201-55658220 | Msa0078270:intron | 30.0% | |
| CAATGTTCATAATCATGGAA+TGG | - | chr1_2:55658319-55658338 | Msa0078270:CDS | 30.0% | |
| AAAGTTGCTACAATGTTTCA+GGG | - | chr1_2:55658443-55658462 | Msa0078270:CDS | 30.0% | |
| !!! | AGATAATGCTTTTTCTAGTC+GGG | - | chr1_2:55658469-55658488 | Msa0078270:CDS | 30.0% |
| AGAAGAAGAAATCTTGATGT+GGG | - | chr1_2:55658518-55658537 | Msa0078270:intron | 30.0% | |
| AATGATAAATTTCTTCTGGG+TGG | - | chr1_2:55658631-55658650 | Msa0078270:intron | 30.0% | |
| AAATGGCATATCATACTTGT+TGG | + | chr1_2:55658723-55658742 | None:intergenic | 30.0% | |
| TGATCTGTTATTATTGACAC+TGG | + | chr1_2:55658875-55658894 | None:intergenic | 30.0% | |
| TTATGTGCCATAAACATAAC+CGG | + | chr1_2:55658949-55658968 | None:intergenic | 30.0% | |
| ! | GCTTGAAAGTTGAATTTTTG+TGG | + | chr1_2:55659006-55659025 | None:intergenic | 30.0% |
| AGAAGAATGGGAATGTATAA+TGG | - | chr1_2:55659075-55659094 | Msa0078270:intron | 30.0% | |
| AGTTAAATTTGACAAGGCAA+TGG | - | chr1_2:55659279-55659298 | Msa0078270:CDS | 30.0% | |
| AGGGAAAAACTTGAAAAAGA+AGG | - | chr1_2:55659463-55659482 | Msa0078270:intron | 30.0% | |
| GGGAAAAACTTGAAAAAGAA+GGG | - | chr1_2:55659464-55659483 | Msa0078270:intron | 30.0% | |
| AGGGTCTCAGTATATATATA+AGG | - | chr1_2:55659483-55659502 | Msa0078270:intron | 30.0% | |
| ! | ATTCATAGTTTGTGTGGATT+TGG | - | chr1_2:55659534-55659553 | Msa0078270:CDS | 30.0% |
| !!! | TGCCAGCTTTTTCAATTTAT+GGG | - | chr1_2:55659580-55659599 | Msa0078270:intron | 30.0% |
| ATCCCATAAATTGAAAAAGC+TGG | + | chr1_2:55659585-55659604 | None:intergenic | 30.0% | |
| AATTTATGGGATTGCTATGT+AGG | - | chr1_2:55659593-55659612 | Msa0078270:intron | 30.0% | |
| !! | CGCTTTAAAATATACATGTC+TGG | + | chr1_2:55659661-55659680 | None:intergenic | 30.0% |
| !!! | TATTTTAAAGCGTTGGACAA+AGG | - | chr1_2:55659669-55659688 | Msa0078270:intron | 30.0% |
| TAAGCTGATATCATCTGATT+TGG | - | chr1_2:55659831-55659850 | Msa0078270:intron | 30.0% | |
| TCAAAGAGATTCAAAATGGA+AGG | - | chr1_2:55659976-55659995 | Msa0078270:intron | 30.0% | |
| GTGTACTCAATTGATCTTAG+GGG | + | chr1_2:55657763-55657782 | None:intergenic | 35.0% | |
| GGTGTACTCAATTGATCTTA+GGG | + | chr1_2:55657764-55657783 | None:intergenic | 35.0% | |
| AGTACACCGTCAAAAACAAT+TGG | - | chr1_2:55657776-55657795 | Msa0078270:CDS | 35.0% | |
| CTTGTCTTTCACGTGTTAAT+AGG | - | chr1_2:55657811-55657830 | Msa0078270:CDS | 35.0% | |
| TTTCACGTGTTAATAGGGAT+TGG | - | chr1_2:55657817-55657836 | Msa0078270:CDS | 35.0% | |
| CTCATTATCCATGTACCTAT+AGG | + | chr1_2:55658045-55658064 | None:intergenic | 35.0% | |
| TTTGCCAAGAAAGAAGGATT+TGG | - | chr1_2:55658110-55658129 | Msa0078270:intron | 35.0% | |
| AACTCCAAATCCTTCTTTCT+TGG | + | chr1_2:55658117-55658136 | None:intergenic | 35.0% | |
| ATGTTTGTATGCGCTAATGA+AGG | - | chr1_2:55658167-55658186 | Msa0078270:intron | 35.0% | |
| GTAAAGGGTGAAAATGAAGA+AGG | - | chr1_2:55658200-55658219 | Msa0078270:intron | 35.0% | |
| TGCTTTACAATCAGTTCTTG+AGG | + | chr1_2:55658243-55658262 | None:intergenic | 35.0% | |
| TCACTTACTGTTTCAAAAGC+AGG | - | chr1_2:55658263-55658282 | Msa0078270:intron | 35.0% | |
| CACTTACTGTTTCAAAAGCA+GGG | - | chr1_2:55658264-55658283 | Msa0078270:intron | 35.0% | |
| GTTGAGAAGTTTGATGAAGA+AGG | - | chr1_2:55658407-55658426 | Msa0078270:CDS | 35.0% | |
| GAAAGTTGCTACAATGTTTC+AGG | - | chr1_2:55658442-55658461 | Msa0078270:CDS | 35.0% | |
| CAGAAGAAGAAATCTTGATG+TGG | - | chr1_2:55658517-55658536 | Msa0078270:intron | 35.0% | |
| ATAAATTTCTTCTGGGTGGA+TGG | - | chr1_2:55658635-55658654 | Msa0078270:intron | 35.0% | |
| ! | TTGAGTGGTTGTTTAGAACA+TGG | - | chr1_2:55658825-55658844 | Msa0078270:intron | 35.0% |
| AAGGAGAATGAATGGCTTAA+AGG | - | chr1_2:55659112-55659131 | Msa0078270:intron | 35.0% | |
| AGGAGAATGAATGGCTTAAA+GGG | - | chr1_2:55659113-55659132 | Msa0078270:intron | 35.0% | |
| ! | AAAGTGCTTCTGTTGAAAAC+AGG | + | chr1_2:55659166-55659185 | None:intergenic | 35.0% |
| !!! | AACAGAAGCACTTTTTTTGC+CGG | - | chr1_2:55659172-55659191 | Msa0078270:intron | 35.0% |
| CTGTGAAAAACAAAGAAGAG+AGG | - | chr1_2:55659309-55659328 | Msa0078270:CDS | 35.0% | |
| ! | GAAGAGAGGATTTTGAATCA+AGG | - | chr1_2:55659323-55659342 | Msa0078270:CDS | 35.0% |
| ! | AGACACATTCATAGTTTGTG+TGG | - | chr1_2:55659528-55659547 | Msa0078270:CDS | 35.0% |
| !!! | CTGCCAGCTTTTTCAATTTA+TGG | - | chr1_2:55659579-55659598 | Msa0078270:intron | 35.0% |
| ATTGCTATGTAGGCATATCT+TGG | - | chr1_2:55659603-55659622 | Msa0078270:intron | 35.0% | |
| GTGTACTCAATTGATCTTAG+GGG | + | chr1_2:55657763-55657782 | None:intergenic | 35.0% | |
| GGTGTACTCAATTGATCTTA+GGG | + | chr1_2:55657764-55657783 | None:intergenic | 35.0% | |
| AGTACACCGTCAAAAACAAT+TGG | - | chr1_2:55657776-55657795 | Msa0078270:CDS | 35.0% | |
| CTTGTCTTTCACGTGTTAAT+AGG | - | chr1_2:55657811-55657830 | Msa0078270:CDS | 35.0% | |
| TTTCACGTGTTAATAGGGAT+TGG | - | chr1_2:55657817-55657836 | Msa0078270:CDS | 35.0% | |
| CTCATTATCCATGTACCTAT+AGG | + | chr1_2:55658045-55658064 | None:intergenic | 35.0% | |
| TTTGCCAAGAAAGAAGGATT+TGG | - | chr1_2:55658110-55658129 | Msa0078270:intron | 35.0% | |
| AACTCCAAATCCTTCTTTCT+TGG | + | chr1_2:55658117-55658136 | None:intergenic | 35.0% | |
| ATGTTTGTATGCGCTAATGA+AGG | - | chr1_2:55658167-55658186 | Msa0078270:intron | 35.0% | |
| GTAAAGGGTGAAAATGAAGA+AGG | - | chr1_2:55658200-55658219 | Msa0078270:intron | 35.0% | |
| TGCTTTACAATCAGTTCTTG+AGG | + | chr1_2:55658243-55658262 | None:intergenic | 35.0% | |
| TCACTTACTGTTTCAAAAGC+AGG | - | chr1_2:55658263-55658282 | Msa0078270:intron | 35.0% | |
| CACTTACTGTTTCAAAAGCA+GGG | - | chr1_2:55658264-55658283 | Msa0078270:intron | 35.0% | |
| GTTGAGAAGTTTGATGAAGA+AGG | - | chr1_2:55658407-55658426 | Msa0078270:CDS | 35.0% | |
| GAAAGTTGCTACAATGTTTC+AGG | - | chr1_2:55658442-55658461 | Msa0078270:CDS | 35.0% | |
| CAGAAGAAGAAATCTTGATG+TGG | - | chr1_2:55658517-55658536 | Msa0078270:intron | 35.0% | |
| ATAAATTTCTTCTGGGTGGA+TGG | - | chr1_2:55658635-55658654 | Msa0078270:intron | 35.0% | |
| ! | TTGAGTGGTTGTTTAGAACA+TGG | - | chr1_2:55658825-55658844 | Msa0078270:intron | 35.0% |
| AAGGAGAATGAATGGCTTAA+AGG | - | chr1_2:55659112-55659131 | Msa0078270:intron | 35.0% | |
| AGGAGAATGAATGGCTTAAA+GGG | - | chr1_2:55659113-55659132 | Msa0078270:intron | 35.0% | |
| ! | AAAGTGCTTCTGTTGAAAAC+AGG | + | chr1_2:55659166-55659185 | None:intergenic | 35.0% |
| !!! | AACAGAAGCACTTTTTTTGC+CGG | - | chr1_2:55659172-55659191 | Msa0078270:intron | 35.0% |
| CTGTGAAAAACAAAGAAGAG+AGG | - | chr1_2:55659309-55659328 | Msa0078270:CDS | 35.0% | |
| ! | GAAGAGAGGATTTTGAATCA+AGG | - | chr1_2:55659323-55659342 | Msa0078270:CDS | 35.0% |
| ! | AGACACATTCATAGTTTGTG+TGG | - | chr1_2:55659528-55659547 | Msa0078270:CDS | 35.0% |
| !!! | CTGCCAGCTTTTTCAATTTA+TGG | - | chr1_2:55659579-55659598 | Msa0078270:intron | 35.0% |
| ATTGCTATGTAGGCATATCT+TGG | - | chr1_2:55659603-55659622 | Msa0078270:intron | 35.0% | |
| TGTGTTACAGAAAACTCACG+CGG | + | chr1_2:55657694-55657713 | None:intergenic | 40.0% | |
| CTCAATTGATCTTAGGGGAA+AGG | + | chr1_2:55657758-55657777 | None:intergenic | 40.0% | |
| CGGTGTACTCAATTGATCTT+AGG | + | chr1_2:55657765-55657784 | None:intergenic | 40.0% | |
| ACACGTGAAAGACAAGCATA+TGG | + | chr1_2:55657807-55657826 | None:intergenic | 40.0% | |
| GTACATGGATAATGAGTGTG+TGG | - | chr1_2:55658049-55658068 | Msa0078270:CDS | 40.0% | |
| ! | GAATTCTTTTACATCCGCAG+TGG | + | chr1_2:55658081-55658100 | None:intergenic | 40.0% |
| ACATCGTTTGCCAAGAAAGA+AGG | - | chr1_2:55658104-55658123 | Msa0078270:intron | 40.0% | |
| ! | AAGGATTTGGAGTTCGTGTT+CGG | - | chr1_2:55658123-55658142 | Msa0078270:intron | 40.0% |
| AAGCAGGGAAGAGAAGTAAA+TGG | - | chr1_2:55658279-55658298 | Msa0078270:CDS | 40.0% | |
| AGCAGGGAAGAGAAGTAAAT+GGG | - | chr1_2:55658280-55658299 | Msa0078270:CDS | 40.0% | |
| ! | AATGGTTAGTCCTAAGAGTG+TGG | - | chr1_2:55658337-55658356 | Msa0078270:CDS | 40.0% |
| TTTCTTATGAGACCGCAGAT+AGG | + | chr1_2:55658363-55658382 | None:intergenic | 40.0% | |
| CTTCATCAAACTTCTCAACG+AGG | + | chr1_2:55658406-55658425 | None:intergenic | 40.0% | |
| !! | ATGAAGAAGGAGTACCTACA+GGG | - | chr1_2:55658420-55658439 | Msa0078270:CDS | 40.0% |
| ATTGTAGCAACTTTCCCTGT+AGG | + | chr1_2:55658437-55658456 | None:intergenic | 40.0% | |
| TGATGATTCAATCCGGTGAA+GGG | + | chr1_2:55658749-55658768 | None:intergenic | 40.0% | |
| ATGATGATTCAATCCGGTGA+AGG | + | chr1_2:55658750-55658769 | None:intergenic | 40.0% | |
| ATGTGGGAAAACATTGCCTA+TGG | + | chr1_2:55658918-55658937 | None:intergenic | 40.0% | |
| TTGTGTGGATTTGGAGACAA+AGG | - | chr1_2:55659543-55659562 | Msa0078270:CDS | 40.0% | |
| TGGACAAAGGATGCTAACAA+AGG | - | chr1_2:55659682-55659701 | Msa0078270:intron | 40.0% | |
| ! | GGTGCTGTGTTTATTGAAGA+TGG | - | chr1_2:55659703-55659722 | Msa0078270:intron | 40.0% |
| !! | AGTTGATGAGTTTCCTGTAG+AGG | + | chr1_2:55659740-55659759 | None:intergenic | 40.0% |
| ! | TCAGATTTTGCTGCAAGATC+AGG | + | chr1_2:55659802-55659821 | None:intergenic | 40.0% |
| !! | GCTGATATCATCTGATTTGG+AGG | - | chr1_2:55659834-55659853 | Msa0078270:intron | 40.0% |
| !! | TCTTTAGTTTGTGATGGGAG+TGG | + | chr1_2:55659939-55659958 | None:intergenic | 40.0% |
| TGTGTTACAGAAAACTCACG+CGG | + | chr1_2:55657694-55657713 | None:intergenic | 40.0% | |
| CTCAATTGATCTTAGGGGAA+AGG | + | chr1_2:55657758-55657777 | None:intergenic | 40.0% | |
| CGGTGTACTCAATTGATCTT+AGG | + | chr1_2:55657765-55657784 | None:intergenic | 40.0% | |
| ACACGTGAAAGACAAGCATA+TGG | + | chr1_2:55657807-55657826 | None:intergenic | 40.0% | |
| GTACATGGATAATGAGTGTG+TGG | - | chr1_2:55658049-55658068 | Msa0078270:CDS | 40.0% | |
| ! | GAATTCTTTTACATCCGCAG+TGG | + | chr1_2:55658081-55658100 | None:intergenic | 40.0% |
| ACATCGTTTGCCAAGAAAGA+AGG | - | chr1_2:55658104-55658123 | Msa0078270:intron | 40.0% | |
| ! | AAGGATTTGGAGTTCGTGTT+CGG | - | chr1_2:55658123-55658142 | Msa0078270:intron | 40.0% |
| AAGCAGGGAAGAGAAGTAAA+TGG | - | chr1_2:55658279-55658298 | Msa0078270:CDS | 40.0% | |
| AGCAGGGAAGAGAAGTAAAT+GGG | - | chr1_2:55658280-55658299 | Msa0078270:CDS | 40.0% | |
| ! | AATGGTTAGTCCTAAGAGTG+TGG | - | chr1_2:55658337-55658356 | Msa0078270:CDS | 40.0% |
| TTTCTTATGAGACCGCAGAT+AGG | + | chr1_2:55658363-55658382 | None:intergenic | 40.0% | |
| CTTCATCAAACTTCTCAACG+AGG | + | chr1_2:55658406-55658425 | None:intergenic | 40.0% | |
| !! | ATGAAGAAGGAGTACCTACA+GGG | - | chr1_2:55658420-55658439 | Msa0078270:CDS | 40.0% |
| ATTGTAGCAACTTTCCCTGT+AGG | + | chr1_2:55658437-55658456 | None:intergenic | 40.0% | |
| TGATGATTCAATCCGGTGAA+GGG | + | chr1_2:55658749-55658768 | None:intergenic | 40.0% | |
| ATGATGATTCAATCCGGTGA+AGG | + | chr1_2:55658750-55658769 | None:intergenic | 40.0% | |
| ATGTGGGAAAACATTGCCTA+TGG | + | chr1_2:55658918-55658937 | None:intergenic | 40.0% | |
| TTGTGTGGATTTGGAGACAA+AGG | - | chr1_2:55659543-55659562 | Msa0078270:CDS | 40.0% | |
| TGGACAAAGGATGCTAACAA+AGG | - | chr1_2:55659682-55659701 | Msa0078270:intron | 40.0% | |
| ! | GGTGCTGTGTTTATTGAAGA+TGG | - | chr1_2:55659703-55659722 | Msa0078270:intron | 40.0% |
| !! | AGTTGATGAGTTTCCTGTAG+AGG | + | chr1_2:55659740-55659759 | None:intergenic | 40.0% |
| ! | TCAGATTTTGCTGCAAGATC+AGG | + | chr1_2:55659802-55659821 | None:intergenic | 40.0% |
| !! | GCTGATATCATCTGATTTGG+AGG | - | chr1_2:55659834-55659853 | Msa0078270:intron | 40.0% |
| !! | TCTTTAGTTTGTGATGGGAG+TGG | + | chr1_2:55659939-55659958 | None:intergenic | 40.0% |
| AAGGTGCAGAACTTTCTCCT+CGG | + | chr1_2:55657666-55657685 | None:intergenic | 45.0% | |
| !!! | GCGGTGCCAATTGTTTTTGA+CGG | + | chr1_2:55657785-55657804 | None:intergenic | 45.0% |
| CGTGAAAGACAAGCATATGG+CGG | + | chr1_2:55657804-55657823 | None:intergenic | 45.0% | |
| GTGTGTGGAAAATTCCACTG+CGG | - | chr1_2:55658064-55658083 | Msa0078270:intron | 45.0% | |
| !! | GATGAAGAAGGAGTACCTAC+AGG | - | chr1_2:55658419-55658438 | Msa0078270:CDS | 45.0% |
| !! | CTTTTTCTAGTCGGGATTGC+TGG | - | chr1_2:55658477-55658496 | Msa0078270:CDS | 45.0% |
| AGACTCAGAAGACGTTTGAG+TGG | - | chr1_2:55658810-55658829 | Msa0078270:intron | 45.0% | |
| TAGAACATGGCTAGACGCAA+TGG | - | chr1_2:55658838-55658857 | Msa0078270:intron | 45.0% | |
| AGAACATGGCTAGACGCAAT+GGG | - | chr1_2:55658839-55658858 | Msa0078270:intron | 45.0% | |
| TTGGCAATGAAAGCTGCCAT+AGG | - | chr1_2:55658899-55658918 | Msa0078270:intron | 45.0% | |
| ! | TTTTCCCACATACTCGTCAC+CGG | - | chr1_2:55658927-55658946 | Msa0078270:intron | 45.0% |
| ATAACCGGTGACGAGTATGT+GGG | + | chr1_2:55658934-55658953 | None:intergenic | 45.0% | |
| ! | CTCGTCACCGGTTATGTTTA+TGG | - | chr1_2:55658939-55658958 | Msa0078270:intron | 45.0% |
| CCTTTGTGTAGTGTTCATGC+CGG | + | chr1_2:55659194-55659213 | None:intergenic | 45.0% | |
| TTTCCTGTAGAGGAAGACTC+TGG | + | chr1_2:55659730-55659749 | None:intergenic | 45.0% | |
| GGGAGTGGATCTCTGATAAT+TGG | + | chr1_2:55659924-55659943 | None:intergenic | 45.0% | |
| AAGGTGCAGAACTTTCTCCT+CGG | + | chr1_2:55657666-55657685 | None:intergenic | 45.0% | |
| !!! | GCGGTGCCAATTGTTTTTGA+CGG | + | chr1_2:55657785-55657804 | None:intergenic | 45.0% |
| CGTGAAAGACAAGCATATGG+CGG | + | chr1_2:55657804-55657823 | None:intergenic | 45.0% | |
| GTGTGTGGAAAATTCCACTG+CGG | - | chr1_2:55658064-55658083 | Msa0078270:intron | 45.0% | |
| !! | GATGAAGAAGGAGTACCTAC+AGG | - | chr1_2:55658419-55658438 | Msa0078270:CDS | 45.0% |
| !! | CTTTTTCTAGTCGGGATTGC+TGG | - | chr1_2:55658477-55658496 | Msa0078270:CDS | 45.0% |
| AGACTCAGAAGACGTTTGAG+TGG | - | chr1_2:55658810-55658829 | Msa0078270:intron | 45.0% | |
| TAGAACATGGCTAGACGCAA+TGG | - | chr1_2:55658838-55658857 | Msa0078270:intron | 45.0% | |
| AGAACATGGCTAGACGCAAT+GGG | - | chr1_2:55658839-55658858 | Msa0078270:intron | 45.0% | |
| TTGGCAATGAAAGCTGCCAT+AGG | - | chr1_2:55658899-55658918 | Msa0078270:intron | 45.0% | |
| ! | TTTTCCCACATACTCGTCAC+CGG | - | chr1_2:55658927-55658946 | Msa0078270:intron | 45.0% |
| ATAACCGGTGACGAGTATGT+GGG | + | chr1_2:55658934-55658953 | None:intergenic | 45.0% | |
| ! | CTCGTCACCGGTTATGTTTA+TGG | - | chr1_2:55658939-55658958 | Msa0078270:intron | 45.0% |
| CCTTTGTGTAGTGTTCATGC+CGG | + | chr1_2:55659194-55659213 | None:intergenic | 45.0% | |
| TTTCCTGTAGAGGAAGACTC+TGG | + | chr1_2:55659730-55659749 | None:intergenic | 45.0% | |
| GGGAGTGGATCTCTGATAAT+TGG | + | chr1_2:55659924-55659943 | None:intergenic | 45.0% | |
| ! | CTAAGAGTGTGGCCTATCTG+CGG | - | chr1_2:55658348-55658367 | Msa0078270:CDS | 50.0% |
| GGTGGATGGAAGAGCAAGAT+TGG | - | chr1_2:55658649-55658668 | Msa0078270:intron | 50.0% | |
| ! | ATGCCATTTGCACCCTTCAC+CGG | - | chr1_2:55658734-55658753 | Msa0078270:intron | 50.0% |
| ! | AATCCGGTGAAGGGTGCAAA+TGG | + | chr1_2:55658740-55658759 | None:intergenic | 50.0% |
| CATAACCGGTGACGAGTATG+TGG | + | chr1_2:55658935-55658954 | None:intergenic | 50.0% | |
| CCGGCATGAACACTACACAA+AGG | - | chr1_2:55659191-55659210 | Msa0078270:intron | 50.0% | |
| ! | CTAAGAGTGTGGCCTATCTG+CGG | - | chr1_2:55658348-55658367 | Msa0078270:CDS | 50.0% |
| GGTGGATGGAAGAGCAAGAT+TGG | - | chr1_2:55658649-55658668 | Msa0078270:intron | 50.0% | |
| ! | ATGCCATTTGCACCCTTCAC+CGG | - | chr1_2:55658734-55658753 | Msa0078270:intron | 50.0% |
| ! | AATCCGGTGAAGGGTGCAAA+TGG | + | chr1_2:55658740-55658759 | None:intergenic | 50.0% |
| CATAACCGGTGACGAGTATG+TGG | + | chr1_2:55658935-55658954 | None:intergenic | 50.0% | |
| CCGGCATGAACACTACACAA+AGG | - | chr1_2:55659191-55659210 | Msa0078270:intron | 50.0% | |
| GTGCAGAACTTTCTCCTCGG+CGG | + | chr1_2:55657663-55657682 | None:intergenic | 55.0% | |
| GAAAACTCACGCGGTGACGA+AGG | + | chr1_2:55657685-55657704 | None:intergenic | 55.0% | |
| CGCAGATAGGCCACACTCTT+AGG | + | chr1_2:55658350-55658369 | None:intergenic | 55.0% | |
| ACATGGCTAGACGCAATGGG+TGG | - | chr1_2:55658842-55658861 | Msa0078270:intron | 55.0% | |
| GGACCAGAGTCTTCCTCTAC+AGG | - | chr1_2:55659724-55659743 | Msa0078270:intron | 55.0% | |
| GTGCAGAACTTTCTCCTCGG+CGG | + | chr1_2:55657663-55657682 | None:intergenic | 55.0% | |
| GAAAACTCACGCGGTGACGA+AGG | + | chr1_2:55657685-55657704 | None:intergenic | 55.0% | |
| CGCAGATAGGCCACACTCTT+AGG | + | chr1_2:55658350-55658369 | None:intergenic | 55.0% | |
| ACATGGCTAGACGCAATGGG+TGG | - | chr1_2:55658842-55658861 | Msa0078270:intron | 55.0% | |
| GGACCAGAGTCTTCCTCTAC+AGG | - | chr1_2:55659724-55659743 | Msa0078270:intron | 55.0% | |
| CAAAGTCCTCATTGCCGCCG+AGG | - | chr1_2:55657646-55657665 | Msa0078270:CDS | 60.0% | |
| CTTTCTCCTCGGCGGCAATG+AGG | + | chr1_2:55657655-55657674 | None:intergenic | 60.0% | |
| CAAAGTCCTCATTGCCGCCG+AGG | - | chr1_2:55657646-55657665 | Msa0078270:CDS | 60.0% | |
| CTTTCTCCTCGGCGGCAATG+AGG | + | chr1_2:55657655-55657674 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 55657622 | 55660014 | 55657622 | ID=Msa0078270;Name=Msa0078270 |
| chr1_2 | mRNA | 55657622 | 55660014 | 55657622 | ID=Msa0078270-mRNA-1;Parent=Msa0078270;Name=Msa0078270-mRNA-1;_AED=0.15;_eAED=0.22;_QI=0|0|0|0.8|0|0|5|0|345 |
| chr1_2 | exon | 55660010 | 55660014 | 55660010 | ID=Msa0078270-mRNA-1:exon:17354;Parent=Msa0078270-mRNA-1 |
| chr1_2 | exon | 55659499 | 55659587 | 55659499 | ID=Msa0078270-mRNA-1:exon:17353;Parent=Msa0078270-mRNA-1 |
| chr1_2 | exon | 55659206 | 55659447 | 55659206 | ID=Msa0078270-mRNA-1:exon:17352;Parent=Msa0078270-mRNA-1 |
| chr1_2 | exon | 55658276 | 55658521 | 55658276 | ID=Msa0078270-mRNA-1:exon:17351;Parent=Msa0078270-mRNA-1 |
| chr1_2 | exon | 55657622 | 55658077 | 55657622 | ID=Msa0078270-mRNA-1:exon:17350;Parent=Msa0078270-mRNA-1 |
| chr1_2 | CDS | 55660010 | 55660014 | 55660010 | ID=Msa0078270-mRNA-1:cds;Parent=Msa0078270-mRNA-1 |
| chr1_2 | CDS | 55659499 | 55659587 | 55659499 | ID=Msa0078270-mRNA-1:cds;Parent=Msa0078270-mRNA-1 |
| chr1_2 | CDS | 55659206 | 55659447 | 55659206 | ID=Msa0078270-mRNA-1:cds;Parent=Msa0078270-mRNA-1 |
| chr1_2 | CDS | 55658276 | 55658521 | 55658276 | ID=Msa0078270-mRNA-1:cds;Parent=Msa0078270-mRNA-1 |
| chr1_2 | CDS | 55657622 | 55658077 | 55657622 | ID=Msa0078270-mRNA-1:cds;Parent=Msa0078270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
