AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0078400

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0078400 MtrunA17_Chr5g0418191 58.278 151 53 1 4 144 262 412 1.33e-55 179
Msa0078400 MtrunA17_Chr5g0418191 55.000 60 26 1 62 121 151 209 2.88e-16 74.3
Msa0078400 MtrunA17_Chr1g0188941 77.083 96 22 0 29 124 18 113 6.47e-49 153
Msa0078400 MtrunA17_Chr1g0188971 87.805 82 10 0 1 82 1 82 2.72e-48 150
Msa0078400 MtrunA17_Chr4g0042831 55.814 129 53 2 4 132 224 348 2.81e-44 149
Msa0078400 MtrunA17_Chr4g0042831 46.914 81 42 1 42 121 124 204 7.21e-16 73.2
Msa0078400 MtrunA17_Chr7g0218081 53.333 135 62 1 4 138 353 486 5.84e-43 148
Msa0078400 MtrunA17_Chr7g0218081 56.452 62 22 2 62 121 228 286 2.23e-15 72.0
Msa0078400 MtrunA17_Chr1g0188961 86.957 69 5 1 82 150 3 67 2.53e-37 122
Msa0078400 MtrunA17_Chr3g0101131 54.167 120 47 2 12 131 373 484 1.68e-36 131
Msa0078400 MtrunA17_Chr3g0101131 45.205 73 39 1 49 121 230 301 2.66e-14 68.9
Msa0078400 MtrunA17_Chr3g0079691 52.846 123 47 1 11 133 455 566 2.00e-36 132
Msa0078400 MtrunA17_Chr3g0079691 51.667 60 28 1 62 121 280 338 3.35e-13 65.9
Msa0078400 MtrunA17_Chr5g0445311 65.882 85 29 0 47 131 349 433 2.97e-35 127
Msa0078400 MtrunA17_Chr5g0445311 50.000 60 29 1 62 121 200 258 3.89e-13 65.5
Msa0078400 MtrunA17_Chr7g0243891 57.426 101 43 0 23 123 335 435 2.83e-34 125
Msa0078400 MtrunA17_Chr7g0243891 56.452 62 26 1 62 123 216 276 3.94e-17 77.0
Msa0078400 MtrunA17_Chr4g0004911 68.354 79 25 0 43 121 317 395 3.76e-34 124
Msa0078400 MtrunA17_Chr4g0004911 46.341 82 42 1 40 121 164 243 1.03e-16 75.9
Msa0078400 MtrunA17_Chr3g0106491 64.706 85 30 0 38 122 341 425 3.72e-33 122
Msa0078400 MtrunA17_Chr3g0106491 46.154 78 37 2 46 123 186 258 1.98e-17 77.8
Msa0078400 MtrunA17_Chr5g0432161 54.400 125 49 4 10 130 370 490 4.55e-33 122
Msa0078400 MtrunA17_Chr5g0432161 55.000 60 26 1 62 121 244 302 2.10e-16 75.1
Msa0078400 MtrunA17_Chr7g0249311 57.609 92 39 0 43 134 373 464 1.84e-31 118
Msa0078400 MtrunA17_Chr7g0249311 51.613 62 29 1 62 123 179 239 4.88e-14 68.2
Msa0078400 MtrunA17_Chr7g0249301 60.494 81 32 0 43 123 273 353 4.66e-30 112
Msa0078400 MtrunA17_Chr7g0249301 51.562 64 28 2 61 123 61 122 2.89e-14 68.6
Msa0078400 MtrunA17_Chr4g0051881 51.546 97 43 1 48 140 164 260 3.63e-29 108
Msa0078400 MtrunA17_Chr1g0194481 53.947 76 35 0 47 122 143 218 4.02e-27 103
Msa0078400 MtrunA17_Chr5g0443131 53.247 77 36 0 48 124 143 219 1.45e-26 101
Msa0078400 MtrunA17_Chr3g0129361 52.941 85 40 0 47 131 129 213 1.29e-25 97.1
Msa0078400 MtrunA17_Chr7g0263531 48.837 86 44 0 36 121 335 420 8.11e-25 98.6
Msa0078400 MtrunA17_Chr7g0263531 44.318 88 47 2 63 149 190 276 3.81e-16 74.3
Msa0078400 MtrunA17_Chr7g0270191 50.633 79 39 0 43 121 126 204 1.15e-24 96.3
Msa0078400 MtrunA17_Chr2g0294231 51.948 77 37 0 47 123 188 264 2.30e-24 96.7
Msa0078400 MtrunA17_Chr8g0383351 50.562 89 43 1 47 134 144 232 7.29e-24 92.8
Msa0078400 MtrunA17_Chr8g0335811 56.579 76 33 0 43 118 135 210 8.99e-24 92.4
Msa0078400 MtrunA17_Chr5g0418781 46.939 98 39 2 47 140 109 197 9.31e-24 93.6
Msa0078400 MtrunA17_Chr1g0150801 49.351 77 39 0 42 118 82 158 9.81e-23 88.2
Msa0078400 MtrunA17_Chr5g0447701 50.000 76 38 0 47 122 237 312 5.01e-22 90.5
Msa0078400 MtrunA17_Chr8g0383251 49.315 73 37 0 49 121 95 167 1.37e-21 85.9
Msa0078400 MtrunA17_Chr3g0129321 38.793 116 64 2 6 121 69 177 3.92e-21 85.1
Msa0078400 MtrunA17_Chr4g0074001 42.453 106 58 3 17 121 315 418 5.60e-21 88.2
Msa0078400 MtrunA17_Chr7g0270831 48.235 85 42 2 49 131 203 287 6.43e-21 87.4
Msa0078400 MtrunA17_Chr7g0224801 48.101 79 40 1 54 131 85 163 9.77e-21 83.2
Msa0078400 MtrunA17_Chr4g0068541 47.368 76 40 0 49 124 195 270 3.25e-20 85.5
Msa0078400 MtrunA17_Chr4g0051181 39.316 117 62 4 7 121 194 303 3.86e-20 85.5
Msa0078400 MtrunA17_Chr8g0386241 50.000 70 35 0 54 123 95 164 1.36e-19 80.5
Msa0078400 MtrunA17_Chr2g0333851 50.000 64 31 1 60 122 167 230 5.22e-19 81.3
Msa0078400 MtrunA17_Chr4g0060271 54.839 62 27 1 61 121 254 315 5.47e-19 82.4
Msa0078400 MtrunA17_Chr4g0025051 35.211 142 82 4 12 147 285 422 8.08e-19 82.0
Msa0078400 MtrunA17_Chr1g0147881 49.351 77 38 1 49 124 249 325 1.20e-18 80.5
Msa0078400 MtrunA17_Chr7g0216891 45.977 87 43 3 49 131 204 290 1.28e-18 81.3
Msa0078400 MtrunA17_Chr2g0302391 45.946 74 39 1 49 121 198 271 1.71e-18 80.9
Msa0078400 MtrunA17_Chr5g0401821 46.835 79 41 1 49 126 186 264 1.79e-18 79.3
Msa0078400 MtrunA17_Chr3g0136961 52.542 59 27 1 61 118 137 195 2.91e-18 79.0
Msa0078400 MtrunA17_Chr1g0189391 54.930 71 31 1 49 118 84 154 4.23e-18 79.0
Msa0078400 MtrunA17_Chr4g0025061 44.444 81 44 1 44 123 342 422 4.91e-18 79.7
Msa0078400 MtrunA17_Chr7g0238921 57.627 59 25 0 60 118 122 180 6.51e-18 78.6
Msa0078400 MtrunA17_Chr5g0432071 54.839 62 27 1 62 123 104 164 7.01e-18 76.6
Msa0078400 MtrunA17_Chr3g0099641 34.615 130 78 3 13 135 197 326 1.04e-17 78.6
Msa0078400 MtrunA17_Chr2g0288871 40.404 99 53 2 29 121 267 365 2.09e-17 77.8
Msa0078400 MtrunA17_Chr4g0053281 45.570 79 42 1 49 126 253 331 2.73e-17 77.0
Msa0078400 MtrunA17_Chr5g0447711 37.805 82 51 0 47 128 215 296 2.97e-17 76.6
Msa0078400 MtrunA17_Chr6g0485431 51.562 64 30 1 59 121 151 214 5.78e-17 76.3
Msa0078400 MtrunA17_Chr4g0075201 44.737 76 41 1 49 123 254 329 6.46e-17 76.3
Msa0078400 MtrunA17_Chr1g0150281 49.123 57 28 1 63 118 141 197 7.51e-17 75.1
Msa0078400 MtrunA17_Chr2g0322391 44.737 76 41 1 49 123 336 411 9.50e-17 75.9
Msa0078400 MtrunA17_Chr2g0319961 38.211 123 55 4 17 132 41 149 9.50e-17 74.7
Msa0078400 MtrunA17_Chr1g0184691 45.679 81 42 2 49 127 280 360 1.02e-16 75.5
Msa0078400 MtrunA17_Chr4g0001361 47.619 63 32 1 60 121 160 222 1.18e-16 75.1
Msa0078400 MtrunA17_Chr7g0248721 49.296 71 35 1 48 118 127 196 1.54e-16 73.2
Msa0078400 MtrunA17_Chr7g0270051 43.243 74 41 1 60 132 51 124 1.83e-16 73.9
Msa0078400 MtrunA17_Chr4g0071521 46.479 71 37 1 49 118 232 302 8.48e-16 72.4
Msa0078400 MtrunA17_Chr8g0379461 51.613 62 29 1 63 123 77 138 2.52e-15 70.5
Msa0078400 MtrunA17_Chr8g0387501 44.872 78 39 2 61 134 128 205 2.78e-15 70.9
Msa0078400 MtrunA17_Chr1g0150271 42.857 63 35 1 60 121 99 161 2.83e-15 70.5
Msa0078400 MtrunA17_Chr2g0293481 41.975 81 43 2 63 142 268 345 6.20e-15 70.9
Msa0078400 MtrunA17_Chr8g0348311 48.611 72 33 2 60 127 153 224 2.17e-14 68.9
Msa0078400 MtrunA17_Chr3g0139021 44.595 74 40 1 47 119 299 372 2.55e-14 68.9
Msa0078400 MtrunA17_Chr2g0284321 44.595 74 40 1 63 135 36 109 2.81e-14 67.0
Msa0078400 MtrunA17_Chr7g0228941 42.308 78 44 1 43 119 33 110 2.88e-14 65.1
Msa0078400 MtrunA17_Chr7g0248691 48.611 72 33 2 60 127 152 223 3.54e-14 68.2
Msa0078400 MtrunA17_Chr2g0289181 47.826 69 35 1 59 126 11 79 5.85e-14 66.6
Msa0078400 MtrunA17_Chr1g0202461 46.154 65 34 1 59 122 258 322 5.20e-13 65.1
Msa0078400 MtrunA17_Chr3g0126391 50.847 59 26 1 61 116 132 190 6.13e-13 64.7
Msa0078400 MtrunA17_Chr4g0024391 31.707 123 81 2 12 133 179 299 2.30e-12 63.5
Msa0078400 MtrunA17_Chr8g0387981 48.276 58 27 1 62 116 132 189 8.77e-12 61.6
Msa0078400 MtrunA17_Chr7g0275531 47.458 59 28 1 61 116 117 175 3.70e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0078400 AT2G03340.1 58.462 130 53 1 2 130 354 483 8.90e-45 153
Msa0078400 AT2G03340.1 50.746 67 32 1 62 128 250 315 7.78e-16 73.6
Msa0078400 AT1G13960.2 59.836 122 47 2 2 121 194 315 3.31e-44 149
Msa0078400 AT1G13960.2 56.667 60 25 1 62 121 76 134 2.59e-17 77.4
Msa0078400 AT1G13960.1 59.836 122 47 2 2 121 347 468 2.16e-43 149
Msa0078400 AT1G13960.1 56.667 60 25 1 62 121 229 287 1.62e-17 78.6
Msa0078400 AT5G56270.1 62.245 98 36 1 26 123 452 548 1.67e-36 132
Msa0078400 AT5G56270.1 53.333 60 27 1 62 121 273 331 2.41e-14 69.7
Msa0078400 AT4G26640.5 58.491 106 42 1 22 127 167 270 1.24e-35 127
Msa0078400 AT4G26640.5 51.613 62 29 1 60 121 33 93 5.74e-14 68.2
Msa0078400 AT4G26640.6 58.491 106 42 1 22 127 167 270 1.24e-35 127
Msa0078400 AT4G26640.6 51.613 62 29 1 60 121 33 93 5.74e-14 68.2
Msa0078400 AT4G26640.4 58.491 106 42 1 22 127 167 270 1.24e-35 127
Msa0078400 AT4G26640.4 51.613 62 29 1 60 121 33 93 5.74e-14 68.2
Msa0078400 AT4G26640.3 58.491 106 42 1 22 127 167 270 1.24e-35 127
Msa0078400 AT4G26640.3 51.613 62 29 1 60 121 33 93 5.74e-14 68.2
Msa0078400 AT5G07100.2 69.737 76 23 0 47 122 126 201 2.33e-35 122
Msa0078400 AT5G07100.2 48.571 70 36 0 62 131 24 93 9.72e-18 76.6
Msa0078400 AT5G07100.4 69.737 76 23 0 47 122 126 201 2.33e-35 122
Msa0078400 AT5G07100.4 48.571 70 36 0 62 131 24 93 9.72e-18 76.6
Msa0078400 AT5G07100.5 69.737 76 23 0 47 122 126 201 2.33e-35 122
Msa0078400 AT5G07100.5 48.571 70 36 0 62 131 24 93 9.72e-18 76.6
Msa0078400 AT5G07100.3 69.737 76 23 0 47 122 126 201 2.33e-35 122
Msa0078400 AT5G07100.3 48.571 70 36 0 62 131 24 93 9.72e-18 76.6
Msa0078400 AT4G26640.1 58.491 106 42 1 22 127 271 374 4.26e-35 127
Msa0078400 AT4G26640.1 51.613 62 29 1 60 121 137 197 5.07e-14 68.6
Msa0078400 AT3G01080.1 59.783 92 37 0 30 121 274 365 4.97e-35 126
Msa0078400 AT3G01080.1 51.667 60 28 1 62 121 167 225 5.79e-13 65.5
Msa0078400 AT4G26640.7 58.491 106 42 1 22 127 303 406 5.39e-35 127
Msa0078400 AT4G26640.7 51.613 62 29 1 60 121 169 229 4.45e-14 68.6
Msa0078400 AT4G26440.1 53.043 115 53 1 14 128 325 438 5.56e-35 127
Msa0078400 AT4G26440.1 51.667 60 28 1 62 121 178 236 3.89e-14 68.9
Msa0078400 AT4G26640.2 58.491 106 42 1 22 127 343 446 6.50e-35 127
Msa0078400 AT4G26640.2 51.613 62 29 1 60 121 209 269 4.15e-14 68.9
Msa0078400 AT3G01080.2 59.783 92 37 0 30 121 312 403 7.64e-35 126
Msa0078400 AT3G01080.2 51.667 60 28 1 62 121 205 263 5.26e-13 65.5
Msa0078400 AT5G07100.1 69.737 76 23 0 47 122 219 294 1.45e-34 122
Msa0078400 AT5G07100.1 48.571 70 36 0 62 131 117 186 1.92e-17 77.4
Msa0078400 AT2G38470.1 48.507 134 60 1 6 130 297 430 2.91e-34 125
Msa0078400 AT2G38470.1 53.333 60 27 1 62 121 184 242 8.27e-16 73.6
Msa0078400 AT2G30250.1 59.259 81 33 0 47 127 313 393 1.68e-30 113
Msa0078400 AT2G30250.1 50.000 60 29 1 62 121 166 224 2.23e-11 60.8
Msa0078400 AT4G18170.1 42.735 117 53 2 8 124 132 234 2.74e-29 109
Msa0078400 AT1G29860.1 53.846 78 36 0 47 124 121 198 1.99e-27 103
Msa0078400 AT5G46350.1 53.333 75 35 0 48 122 169 243 1.67e-26 102
Msa0078400 AT3G01970.1 48.913 92 47 0 49 140 52 143 7.80e-26 95.9
Msa0078400 AT2G47260.1 52.000 75 36 0 47 121 159 233 3.46e-25 98.6
Msa0078400 AT2G04880.2 40.800 125 70 2 4 128 229 349 4.29e-25 99.8
Msa0078400 AT2G04880.2 38.938 113 59 3 13 125 71 173 6.49e-17 76.6
Msa0078400 AT2G04880.1 40.800 125 70 2 4 128 253 373 4.65e-25 99.8
Msa0078400 AT2G04880.1 38.938 113 59 3 13 125 71 173 7.42e-17 76.6
Msa0078400 AT5G49520.1 54.545 77 35 0 47 123 206 282 1.13e-24 98.2
Msa0078400 AT5G13080.1 45.652 92 50 0 49 140 54 145 2.18e-24 92.0
Msa0078400 AT5G26170.1 54.286 70 32 0 49 118 100 169 4.15e-24 92.4
Msa0078400 AT2G44745.1 56.579 76 33 0 43 118 126 201 5.26e-24 93.2
Msa0078400 AT4G39410.1 51.648 91 39 1 43 128 204 294 5.40e-24 95.1
Msa0078400 AT5G41570.1 44.554 101 56 0 43 143 79 179 1.60e-23 90.9
Msa0078400 AT3G62340.1 52.703 74 35 0 48 121 104 177 2.32e-23 92.8
Msa0078400 AT5G64810.1 54.054 74 34 0 46 119 94 167 8.00e-23 89.4
Msa0078400 AT1G69310.4 54.167 72 33 0 47 118 132 203 1.35e-22 90.9
Msa0078400 AT1G69310.2 54.167 72 33 0 47 118 132 203 1.35e-22 90.9
Msa0078400 AT1G69310.1 54.167 72 33 0 47 118 132 203 1.35e-22 90.9
Msa0078400 AT1G68150.1 39.024 123 69 3 15 131 186 308 8.80e-22 90.1
Msa0078400 AT1G64000.1 50.000 80 40 0 39 118 91 170 9.05e-22 86.7
Msa0078400 AT2G21900.1 43.750 96 50 2 31 122 74 169 2.15e-21 85.9
Msa0078400 AT2G37260.2 55.556 72 32 0 59 130 264 335 3.65e-21 87.8
Msa0078400 AT2G37260.2 53.333 60 27 1 63 122 84 142 7.90e-15 70.5
Msa0078400 AT2G37260.3 55.556 72 32 0 59 130 266 337 3.72e-21 87.8
Msa0078400 AT2G37260.3 53.333 60 27 1 63 122 86 144 7.82e-15 70.5
Msa0078400 AT4G30935.1 42.105 114 56 3 16 121 279 390 4.73e-21 88.6
Msa0078400 AT2G37260.1 55.556 72 32 0 59 130 346 417 5.42e-21 88.2
Msa0078400 AT2G37260.1 53.333 60 27 1 63 122 166 224 9.22e-15 70.5
Msa0078400 AT1G55600.1 51.136 88 42 1 34 121 280 366 2.04e-20 86.7
Msa0078400 AT4G04450.2 46.835 79 41 1 49 126 185 263 2.65e-20 86.3
Msa0078400 AT4G04450.1 46.835 79 41 1 49 126 279 357 5.08e-20 85.9
Msa0078400 AT5G15130.1 44.211 95 44 3 61 146 226 320 1.74e-19 84.3
Msa0078400 AT5G15130.2 44.211 95 44 3 61 146 184 278 2.30e-19 84.0
Msa0078400 AT1G62300.1 46.053 76 40 1 47 121 297 372 3.27e-19 83.6
Msa0078400 AT1G80840.1 42.857 77 43 1 60 135 144 220 7.54e-19 81.3
Msa0078400 AT2G46130.1 49.296 71 36 0 48 118 16 86 9.83e-19 76.6
Msa0078400 AT2G25000.2 46.774 62 32 1 61 121 102 163 3.92e-18 78.2
Msa0078400 AT2G25000.4 46.774 62 32 1 61 121 102 163 3.92e-18 78.2
Msa0078400 AT3G58710.2 40.157 127 55 5 17 134 31 145 4.74e-18 78.6
Msa0078400 AT3G58710.1 39.844 128 55 5 17 134 31 146 6.90e-18 78.2
Msa0078400 AT2G25000.3 46.774 62 32 1 61 121 124 185 7.19e-18 77.8
Msa0078400 AT2G25000.1 46.774 62 32 1 61 121 145 206 9.98e-18 77.8
Msa0078400 AT1G69310.3 50.000 72 32 1 47 118 132 199 1.39e-17 77.4
Msa0078400 AT4G31800.2 41.772 79 38 2 61 131 110 188 1.62e-17 76.6
Msa0078400 AT4G31800.1 42.857 77 36 2 63 131 177 253 2.26e-17 77.4
Msa0078400 AT1G18860.1 43.243 74 41 1 49 121 226 299 2.63e-17 77.8
Msa0078400 AT4G31550.1 50.000 72 35 1 49 119 233 304 3.05e-17 77.0
Msa0078400 AT4G31550.2 50.000 72 35 1 49 119 232 303 3.06e-17 77.0
Msa0078400 AT4G22070.4 47.297 74 38 1 49 121 284 357 5.31e-17 77.0
Msa0078400 AT4G22070.3 47.297 74 38 1 49 121 284 357 5.31e-17 77.0
Msa0078400 AT4G22070.2 47.297 74 38 1 49 121 284 357 5.31e-17 77.0
Msa0078400 AT4G22070.1 47.297 74 38 1 49 121 284 357 5.31e-17 77.0
Msa0078400 AT4G24240.1 46.575 73 38 1 49 120 268 340 1.06e-16 75.9
Msa0078400 AT2G23320.1 49.315 73 36 1 49 120 227 299 1.46e-16 75.1
Msa0078400 AT5G43290.1 44.706 85 35 1 46 118 86 170 3.14e-16 73.6
Msa0078400 AT4G23550.1 47.945 73 34 2 59 127 137 209 3.66e-16 73.9
Msa0078400 AT4G01720.1 45.946 74 39 1 49 121 226 299 7.44e-16 73.9
Msa0078400 AT2G24570.1 46.667 75 39 1 49 122 230 304 1.46e-15 72.4
Msa0078400 AT5G28650.1 43.902 82 45 1 49 129 249 330 1.61e-15 72.4
Msa0078400 AT4G12020.11 48.780 82 41 1 2 82 580 661 1.83e-15 72.8
Msa0078400 AT4G12020.11 36.735 98 53 2 61 150 467 563 5.52e-13 65.9
Msa0078400 AT4G01250.1 44.444 81 41 2 60 139 126 203 2.02e-15 71.6
Msa0078400 AT2G30590.1 47.887 71 36 1 49 118 300 370 2.05e-15 72.4
Msa0078400 AT4G12020.6 48.780 82 41 1 2 82 580 661 2.23e-15 72.8
Msa0078400 AT4G12020.6 36.735 98 53 2 61 150 467 563 3.99e-13 66.2
Msa0078400 AT4G12020.8 48.780 82 41 1 2 82 580 661 2.23e-15 72.8
Msa0078400 AT4G12020.8 36.735 98 53 2 61 150 467 563 3.99e-13 66.2
Msa0078400 AT4G12020.3 48.780 82 41 1 2 82 580 661 2.25e-15 72.8
Msa0078400 AT4G12020.3 36.735 98 53 2 61 150 467 563 3.92e-13 66.2
Msa0078400 AT4G12020.7 48.780 82 41 1 2 82 580 661 2.43e-15 72.4
Msa0078400 AT4G12020.7 36.735 98 53 2 61 150 467 563 3.95e-13 66.2
Msa0078400 AT4G12020.1 48.780 82 41 1 2 82 580 661 2.43e-15 72.4
Msa0078400 AT4G12020.1 36.735 98 53 2 61 150 467 563 4.03e-13 66.2
Msa0078400 AT4G12020.9 48.780 82 41 1 2 82 580 661 2.43e-15 72.4
Msa0078400 AT4G12020.9 36.735 98 53 2 61 150 467 563 4.03e-13 66.2
Msa0078400 AT4G12020.2 48.780 82 41 1 2 82 580 661 2.44e-15 72.4
Msa0078400 AT4G12020.2 36.735 98 53 2 61 150 467 563 4.00e-13 66.2
Msa0078400 AT4G12020.10 48.780 82 41 1 2 82 580 661 2.56e-15 72.4
Msa0078400 AT4G12020.10 36.735 98 53 2 61 150 467 563 4.12e-13 66.2
Msa0078400 AT4G12020.4 48.780 82 41 1 2 82 580 661 2.63e-15 72.4
Msa0078400 AT4G12020.4 36.735 98 53 2 61 150 467 563 4.12e-13 66.2
Msa0078400 AT3G04670.1 43.902 82 45 1 49 129 249 330 2.76e-15 71.6
Msa0078400 AT4G12020.5 48.780 82 41 1 2 82 513 594 2.84e-15 72.4
Msa0078400 AT4G12020.5 36.735 98 53 2 61 150 400 496 4.40e-13 65.9
Msa0078400 AT2G34830.1 50.820 61 29 1 63 122 216 276 1.05e-14 70.5
Msa0078400 AT2G34830.2 50.820 61 29 1 63 122 225 285 1.16e-14 70.5
Msa0078400 AT5G52830.1 45.000 80 40 2 52 127 155 234 2.01e-14 69.3
Msa0078400 AT1G30650.1 50.000 60 29 1 63 121 218 277 9.27e-14 67.8
Msa0078400 AT5G45050.4 49.180 61 30 1 63 122 1042 1102 9.36e-14 67.8
Msa0078400 AT5G45050.2 49.180 61 30 1 63 122 1153 1213 9.42e-14 67.8
Msa0078400 AT5G45050.1 49.180 61 30 1 63 122 1181 1241 9.43e-14 67.8
Msa0078400 AT1G29280.1 48.333 60 30 1 63 121 75 134 9.58e-14 66.6
Msa0078400 AT2G46130.2 45.070 71 35 1 48 118 16 82 1.07e-13 63.5
Msa0078400 AT3G01080.3 51.667 60 28 1 62 121 205 263 3.81e-13 65.5
Msa0078400 AT1G69810.1 41.333 75 40 3 61 133 202 274 4.72e-13 65.5
Msa0078400 AT1G69810.2 41.333 75 40 3 61 133 144 216 7.00e-13 65.1
Msa0078400 AT3G56400.1 36.842 76 41 2 60 128 118 193 5.53e-12 62.4
Msa0078400 AT5G45260.1 33.333 93 55 3 35 122 1181 1271 2.95e-11 60.8

Find 33 sgRNAs with CRISPR-Local

Find 284 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATAAAACCTACCTCCTTT+TGG 0.210912 1_2:-55873806 None:intergenic
GTTGTTATTATATTTATTCT+AGG 0.291981 1_2:-55873958 None:intergenic
AAGCAATATCACCTAGGATT+AGG 0.314028 1_2:-55874051 None:intergenic
TCTTAGACGATGGATATAAT+TGG 0.347263 1_2:+55873995 Msa0078400:CDS
AGCAATATCACCTAGGATTA+GGG 0.361293 1_2:-55874050 None:intergenic
TCATGACGTTCCAACATCTA+TGG 0.377282 1_2:+55875164 Msa0078400:CDS
GGATATAATTGGAGAAAATA+CGG 0.397885 1_2:+55874006 Msa0078400:CDS
TTTGACAATATTGGTAATGA+TGG 0.414983 1_2:+55875231 Msa0078400:CDS
ATCAAATAGGTTCTTCATAT+AGG 0.420582 1_2:+55873923 Msa0078400:CDS
GTCTAAGAGATCAATCTTGC+TGG 0.427915 1_2:-55873980 None:intergenic
TACGTTGTGATGACATCTTT+AGG 0.433584 1_2:-55875126 None:intergenic
ATCGCGATCTTAAATCAAAT+AGG 0.461929 1_2:+55873910 Msa0078400:CDS
AAAACTAGGCTCCTCAGAAA+TGG 0.462177 1_2:-55875211 None:intergenic
GAAAGCGTGTAGAGAGAGCT+TGG 0.508767 1_2:+55875097 Msa0078400:CDS
GCATAGGAAACCCTAATCCT+AGG 0.512114 1_2:+55874040 Msa0078400:CDS
TACTACAAATGTACGGTACC+AGG 0.527593 1_2:+55875063 Msa0078400:CDS
ATATTTATTCTAGGCTCTGT+GGG 0.530035 1_2:-55873949 None:intergenic
GATATAATTGGAGAAAATAC+GGG 0.530666 1_2:+55874007 Msa0078400:CDS
GATGTCATCACAACGTATGT+AGG 0.533158 1_2:+55875132 Msa0078400:CDS
TGGCTATTAGCCATAGATGT+TGG 0.542428 1_2:-55875174 None:intergenic
AAGATTGATCTCTTAGACGA+TGG 0.544254 1_2:+55873985 Msa0078400:CDS
TATATTTATTCTAGGCTCTG+TGG 0.546550 1_2:-55873950 None:intergenic
CGCTTTCGAATGCTACAACC+TGG 0.550383 1_2:-55875081 None:intergenic
CCAAGCGAAAATGAAGAACT+AGG 0.556758 1_2:+55873739 Msa0078400:CDS
AGGCTCCTCAGAAATGGTGT+TGG 0.564390 1_2:-55875205 None:intergenic
AAAGCGTGTAGAGAGAGCTT+GGG 0.573571 1_2:+55875098 Msa0078400:CDS
TATTTCCAACACCATTTCTG+AGG 0.589759 1_2:+55875200 Msa0078400:CDS
GCGTGTAGAGAGAGCTTGGG+TGG 0.595065 1_2:+55875101 Msa0078400:CDS
TTACCAATATTGTCAAAACT+AGG 0.612412 1_2:-55875225 None:intergenic
TAGGAGCTACTACAAATGTA+CGG 0.634951 1_2:+55875056 Msa0078400:intron
TACGGGCAACGAGTTTGCAT+AGG 0.651147 1_2:+55874024 Msa0078400:CDS
AAATGGTGTTGGAAATAGTG+TGG 0.703460 1_2:-55875194 None:intergenic
AGCGAAAATGAAGAACTAGG+TGG 0.762878 1_2:+55873742 Msa0078400:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTGTTATTATATTTATTCT+AGG - chr1_2:55873961-55873980 None:intergenic 15.0%
!! TTTGATAGAAAAAAAATATG+TGG + chr1_2:55874760-55874779 Msa0078400:intron 15.0%
!! AATCTATTGTAAATGAAATT+AGG + chr1_2:55874788-55874807 Msa0078400:intron 15.0%
!! ATCTATTGTAAATGAAATTA+GGG + chr1_2:55874789-55874808 Msa0078400:intron 15.0%
!!! GTTGTTATTATATTTATTCT+AGG - chr1_2:55873961-55873980 None:intergenic 15.0%
!! TTTGATAGAAAAAAAATATG+TGG + chr1_2:55874760-55874779 Msa0078400:intron 15.0%
!! AATCTATTGTAAATGAAATT+AGG + chr1_2:55874788-55874807 Msa0078400:intron 15.0%
!! ATCTATTGTAAATGAAATTA+GGG + chr1_2:55874789-55874808 Msa0078400:intron 15.0%
!! AAATGTAAATATGTTTGTCA+TGG + chr1_2:55873830-55873849 Msa0078400:intron 20.0%
!! TAGATAAAATTAAAGTGTGA+AGG - chr1_2:55874079-55874098 None:intergenic 20.0%
!!! GAATAATTGAACTCATTTTT+TGG - chr1_2:55874152-55874171 None:intergenic 20.0%
!! TTATCCATGAATTATACTAT+AGG - chr1_2:55874304-55874323 None:intergenic 20.0%
!! TAAGCTGAAAAATATGTAAA+AGG + chr1_2:55874373-55874392 Msa0078400:intron 20.0%
!! AAATGTAAATATGTTTGTCA+TGG + chr1_2:55873830-55873849 Msa0078400:intron 20.0%
!! TAGATAAAATTAAAGTGTGA+AGG - chr1_2:55874079-55874098 None:intergenic 20.0%
!!! GAATAATTGAACTCATTTTT+TGG - chr1_2:55874152-55874171 None:intergenic 20.0%
!! TTATCCATGAATTATACTAT+AGG - chr1_2:55874304-55874323 None:intergenic 20.0%
!! TAAGCTGAAAAATATGTAAA+AGG + chr1_2:55874373-55874392 Msa0078400:intron 20.0%
! ATCAAATAGGTTCTTCATAT+AGG + chr1_2:55873923-55873942 Msa0078400:CDS 25.0%
! GGATATAATTGGAGAAAATA+CGG + chr1_2:55874006-55874025 Msa0078400:CDS 25.0%
! GATATAATTGGAGAAAATAC+GGG + chr1_2:55874007-55874026 Msa0078400:CDS 25.0%
! AAAGACAACAATAACATTCA+AGG - chr1_2:55874111-55874130 None:intergenic 25.0%
! AATTATTCAGATTCACAAGT+AGG + chr1_2:55874164-55874183 Msa0078400:intron 25.0%
! TTGTAAATGAAATTAGGGTT+AGG + chr1_2:55874794-55874813 Msa0078400:intron 25.0%
! TTACATGAGCATATTGTTTA+CGG - chr1_2:55874870-55874889 None:intergenic 25.0%
! AAATAATACGTGAAATTCAG+GGG - chr1_2:55874959-55874978 None:intergenic 25.0%
! CAAATAATACGTGAAATTCA+GGG - chr1_2:55874960-55874979 None:intergenic 25.0%
! ACAAATAATACGTGAAATTC+AGG - chr1_2:55874961-55874980 None:intergenic 25.0%
! TTACCAATATTGTCAAAACT+AGG - chr1_2:55875228-55875247 None:intergenic 25.0%
!!! TTTGACAATATTGGTAATGA+TGG + chr1_2:55875231-55875250 Msa0078400:CDS 25.0%
! ATCAAATAGGTTCTTCATAT+AGG + chr1_2:55873923-55873942 Msa0078400:CDS 25.0%
! GGATATAATTGGAGAAAATA+CGG + chr1_2:55874006-55874025 Msa0078400:CDS 25.0%
! GATATAATTGGAGAAAATAC+GGG + chr1_2:55874007-55874026 Msa0078400:CDS 25.0%
! AAAGACAACAATAACATTCA+AGG - chr1_2:55874111-55874130 None:intergenic 25.0%
! AATTATTCAGATTCACAAGT+AGG + chr1_2:55874164-55874183 Msa0078400:intron 25.0%
! TTGTAAATGAAATTAGGGTT+AGG + chr1_2:55874794-55874813 Msa0078400:intron 25.0%
! TTACATGAGCATATTGTTTA+CGG - chr1_2:55874870-55874889 None:intergenic 25.0%
! AAATAATACGTGAAATTCAG+GGG - chr1_2:55874959-55874978 None:intergenic 25.0%
! CAAATAATACGTGAAATTCA+GGG - chr1_2:55874960-55874979 None:intergenic 25.0%
! ACAAATAATACGTGAAATTC+AGG - chr1_2:55874961-55874980 None:intergenic 25.0%
! TTACCAATATTGTCAAAACT+AGG - chr1_2:55875228-55875247 None:intergenic 25.0%
!!! TTTGACAATATTGGTAATGA+TGG + chr1_2:55875231-55875250 Msa0078400:CDS 25.0%
! AATAAAACCTACCTCCTTTT+GGG - chr1_2:55873808-55873827 None:intergenic 30.0%
ATCGCGATCTTAAATCAAAT+AGG + chr1_2:55873910-55873929 Msa0078400:CDS 30.0%
ATATTTATTCTAGGCTCTGT+GGG - chr1_2:55873952-55873971 None:intergenic 30.0%
TATATTTATTCTAGGCTCTG+TGG - chr1_2:55873953-55873972 None:intergenic 30.0%
TCTTAGACGATGGATATAAT+TGG + chr1_2:55873995-55874014 Msa0078400:CDS 30.0%
TCCTCCTATAGTATAATTCA+TGG + chr1_2:55874297-55874316 Msa0078400:intron 30.0%
TCCATGAATTATACTATAGG+AGG - chr1_2:55874301-55874320 None:intergenic 30.0%
CTTAGAGTTACAAATTCTAC+TGG - chr1_2:55874357-55874376 None:intergenic 30.0%
ATTTGATCACAAAGTTCAAC+AGG - chr1_2:55874418-55874437 None:intergenic 30.0%
ATCCATACAAGAATCGAAAT+CGG + chr1_2:55874544-55874563 Msa0078400:intron 30.0%
CAATATGCTCATGTAATTAG+TGG + chr1_2:55874874-55874893 Msa0078400:intron 30.0%
AATAATACGTGAAATTCAGG+GGG - chr1_2:55874958-55874977 None:intergenic 30.0%
! AATAAAACCTACCTCCTTTT+GGG - chr1_2:55873808-55873827 None:intergenic 30.0%
ATCGCGATCTTAAATCAAAT+AGG + chr1_2:55873910-55873929 Msa0078400:CDS 30.0%
ATATTTATTCTAGGCTCTGT+GGG - chr1_2:55873952-55873971 None:intergenic 30.0%
TATATTTATTCTAGGCTCTG+TGG - chr1_2:55873953-55873972 None:intergenic 30.0%
TCTTAGACGATGGATATAAT+TGG + chr1_2:55873995-55874014 Msa0078400:CDS 30.0%
TCCTCCTATAGTATAATTCA+TGG + chr1_2:55874297-55874316 Msa0078400:intron 30.0%
TCCATGAATTATACTATAGG+AGG - chr1_2:55874301-55874320 None:intergenic 30.0%
CTTAGAGTTACAAATTCTAC+TGG - chr1_2:55874357-55874376 None:intergenic 30.0%
ATTTGATCACAAAGTTCAAC+AGG - chr1_2:55874418-55874437 None:intergenic 30.0%
ATCCATACAAGAATCGAAAT+CGG + chr1_2:55874544-55874563 Msa0078400:intron 30.0%
CAATATGCTCATGTAATTAG+TGG + chr1_2:55874874-55874893 Msa0078400:intron 30.0%
AATAATACGTGAAATTCAGG+GGG - chr1_2:55874958-55874977 None:intergenic 30.0%
! ATAAAACCTACCTCCTTTTG+GGG - chr1_2:55873807-55873826 None:intergenic 35.0%
! CAATAAAACCTACCTCCTTT+TGG - chr1_2:55873809-55873828 None:intergenic 35.0%
AAGATTGATCTCTTAGACGA+TGG + chr1_2:55873985-55874004 Msa0078400:CDS 35.0%
AGCAATATCACCTAGGATTA+GGG - chr1_2:55874053-55874072 None:intergenic 35.0%
AAGCAATATCACCTAGGATT+AGG - chr1_2:55874054-55874073 None:intergenic 35.0%
! CCACTTGTTGGTAAACTATA+TGG - chr1_2:55874238-55874257 None:intergenic 35.0%
CCATATAGTTTACCAACAAG+TGG + chr1_2:55874235-55874254 Msa0078400:intron 35.0%
ATGTCTCTTAAGCTGACAAT+GGG + chr1_2:55874260-55874279 Msa0078400:intron 35.0%
ACCCTTTAGATTTCAAGAGA+AGG + chr1_2:55874468-55874487 Msa0078400:intron 35.0%
CCCTTCTCTTGAAATCTAAA+GGG - chr1_2:55874472-55874491 None:intergenic 35.0%
CCCTTTAGATTTCAAGAGAA+GGG + chr1_2:55874469-55874488 Msa0078400:intron 35.0%
CCTTTAGATTTCAAGAGAAG+GGG + chr1_2:55874470-55874489 Msa0078400:intron 35.0%
TCCATACAAGAATCGAAATC+GGG + chr1_2:55874545-55874564 Msa0078400:intron 35.0%
! TGATAGTGAAAATGTGGGTT+GGG - chr1_2:55874666-55874685 None:intergenic 35.0%
!! TTGATAGTGAAAATGTGGGT+TGG - chr1_2:55874667-55874686 None:intergenic 35.0%
!! GGGTTTGATAGTGAAAATGT+GGG - chr1_2:55874671-55874690 None:intergenic 35.0%
!! ACAAATGGGTTGATTAGGTT+CGG - chr1_2:55874692-55874711 None:intergenic 35.0%
CTAATCAACCCATTTGTGAA+CGG + chr1_2:55874695-55874714 Msa0078400:intron 35.0%
ATACCTGAAACCAAACTTTG+TGG + chr1_2:55874827-55874846 Msa0078400:intron 35.0%
TACCTGAAACCAAACTTTGT+GGG + chr1_2:55874828-55874847 Msa0078400:intron 35.0%
TGCTTGCCTGTATAATGTTT+AGG + chr1_2:55875037-55875056 Msa0078400:intron 35.0%
GTAGCTCCTAAACATTATAC+AGG - chr1_2:55875046-55875065 None:intergenic 35.0%
TAGGAGCTACTACAAATGTA+CGG + chr1_2:55875056-55875075 Msa0078400:intron 35.0%
TACGTTGTGATGACATCTTT+AGG - chr1_2:55875129-55875148 None:intergenic 35.0%
! AAATGGTGTTGGAAATAGTG+TGG - chr1_2:55875197-55875216 None:intergenic 35.0%
TATTTCCAACACCATTTCTG+AGG + chr1_2:55875200-55875219 Msa0078400:CDS 35.0%
!!! GAGCCTAGTTTTGACAATAT+TGG + chr1_2:55875222-55875241 Msa0078400:CDS 35.0%
! ATAAAACCTACCTCCTTTTG+GGG - chr1_2:55873807-55873826 None:intergenic 35.0%
! CAATAAAACCTACCTCCTTT+TGG - chr1_2:55873809-55873828 None:intergenic 35.0%
AAGATTGATCTCTTAGACGA+TGG + chr1_2:55873985-55874004 Msa0078400:CDS 35.0%
AGCAATATCACCTAGGATTA+GGG - chr1_2:55874053-55874072 None:intergenic 35.0%
AAGCAATATCACCTAGGATT+AGG - chr1_2:55874054-55874073 None:intergenic 35.0%
! CCACTTGTTGGTAAACTATA+TGG - chr1_2:55874238-55874257 None:intergenic 35.0%
CCATATAGTTTACCAACAAG+TGG + chr1_2:55874235-55874254 Msa0078400:intron 35.0%
ATGTCTCTTAAGCTGACAAT+GGG + chr1_2:55874260-55874279 Msa0078400:intron 35.0%
ACCCTTTAGATTTCAAGAGA+AGG + chr1_2:55874468-55874487 Msa0078400:intron 35.0%
CCCTTCTCTTGAAATCTAAA+GGG - chr1_2:55874472-55874491 None:intergenic 35.0%
CCCTTTAGATTTCAAGAGAA+GGG + chr1_2:55874469-55874488 Msa0078400:intron 35.0%
CCTTTAGATTTCAAGAGAAG+GGG + chr1_2:55874470-55874489 Msa0078400:intron 35.0%
TCCATACAAGAATCGAAATC+GGG + chr1_2:55874545-55874564 Msa0078400:intron 35.0%
! TGATAGTGAAAATGTGGGTT+GGG - chr1_2:55874666-55874685 None:intergenic 35.0%
!! TTGATAGTGAAAATGTGGGT+TGG - chr1_2:55874667-55874686 None:intergenic 35.0%
!! GGGTTTGATAGTGAAAATGT+GGG - chr1_2:55874671-55874690 None:intergenic 35.0%
!! ACAAATGGGTTGATTAGGTT+CGG - chr1_2:55874692-55874711 None:intergenic 35.0%
CTAATCAACCCATTTGTGAA+CGG + chr1_2:55874695-55874714 Msa0078400:intron 35.0%
ATACCTGAAACCAAACTTTG+TGG + chr1_2:55874827-55874846 Msa0078400:intron 35.0%
TACCTGAAACCAAACTTTGT+GGG + chr1_2:55874828-55874847 Msa0078400:intron 35.0%
TGCTTGCCTGTATAATGTTT+AGG + chr1_2:55875037-55875056 Msa0078400:intron 35.0%
GTAGCTCCTAAACATTATAC+AGG - chr1_2:55875046-55875065 None:intergenic 35.0%
TAGGAGCTACTACAAATGTA+CGG + chr1_2:55875056-55875075 Msa0078400:intron 35.0%
TACGTTGTGATGACATCTTT+AGG - chr1_2:55875129-55875148 None:intergenic 35.0%
! AAATGGTGTTGGAAATAGTG+TGG - chr1_2:55875197-55875216 None:intergenic 35.0%
TATTTCCAACACCATTTCTG+AGG + chr1_2:55875200-55875219 Msa0078400:CDS 35.0%
!!! GAGCCTAGTTTTGACAATAT+TGG + chr1_2:55875222-55875241 Msa0078400:CDS 35.0%
!! CCTAGTTCTTCATTTTCGCT+TGG - chr1_2:55873742-55873761 None:intergenic 40.0%
CCAAGCGAAAATGAAGAACT+AGG + chr1_2:55873739-55873758 Msa0078400:CDS 40.0%
AGCGAAAATGAAGAACTAGG+TGG + chr1_2:55873742-55873761 Msa0078400:CDS 40.0%
! TAAAACCTACCTCCTTTTGG+GGG - chr1_2:55873806-55873825 None:intergenic 40.0%
GTCTAAGAGATCAATCTTGC+TGG - chr1_2:55873983-55874002 None:intergenic 40.0%
AAGGAGAAGCAATATCACCT+AGG - chr1_2:55874060-55874079 None:intergenic 40.0%
TAAGAGACATGTCCACTTGT+TGG - chr1_2:55874250-55874269 None:intergenic 40.0%
CATGTCTCTTAAGCTGACAA+TGG + chr1_2:55874259-55874278 Msa0078400:intron 40.0%
TGTCTCTTAAGCTGACAATG+GGG + chr1_2:55874261-55874280 Msa0078400:intron 40.0%
CCCCTTCTCTTGAAATCTAA+AGG - chr1_2:55874473-55874492 None:intergenic 40.0%
CACGGCAGACTCAAATTATT+GGG - chr1_2:55874497-55874516 None:intergenic 40.0%
ACACGGCAGACTCAAATTAT+TGG - chr1_2:55874498-55874517 None:intergenic 40.0%
AATAATTTGAGTCTGCCGTG+TGG + chr1_2:55874497-55874516 Msa0078400:intron 40.0%
ATAATTTGAGTCTGCCGTGT+GGG + chr1_2:55874498-55874517 Msa0078400:intron 40.0%
ACCCGATTTCGATTCTTGTA+TGG - chr1_2:55874549-55874568 None:intergenic 40.0%
! CGTTAAAAGTTGAACGGGTT+GGG - chr1_2:55874629-55874648 None:intergenic 40.0%
! CCAACCCGTTCAACTTTTAA+CGG + chr1_2:55874627-55874646 Msa0078400:intron 40.0%
! CAACCCGTTCAACTTTTAAC+GGG + chr1_2:55874628-55874647 Msa0078400:intron 40.0%
CAACCCGTTAAAAGTTGAAC+GGG - chr1_2:55874634-55874653 None:intergenic 40.0%
CCAACCCGTTAAAAGTTGAA+CGG - chr1_2:55874635-55874654 None:intergenic 40.0%
!!! CGTTCAACTTTTAACGGGTT+GGG + chr1_2:55874633-55874652 Msa0078400:intron 40.0%
!! CGGGTTTGATAGTGAAAATG+TGG - chr1_2:55874672-55874691 None:intergenic 40.0%
!! CAAATGGGTTGATTAGGTTC+GGG - chr1_2:55874691-55874710 None:intergenic 40.0%
!! CGTTCACAAATGGGTTGATT+AGG - chr1_2:55874697-55874716 None:intergenic 40.0%
AACCCATTTGTGAACGGTTT+GGG + chr1_2:55874701-55874720 Msa0078400:intron 40.0%
AACCCAAACCGTTCACAAAT+GGG - chr1_2:55874706-55874725 None:intergenic 40.0%
! ATGTAATTAGTGGACCTGGT+CGG + chr1_2:55874884-55874903 Msa0078400:intron 40.0%
TACTACAAATGTACGGTACC+AGG + chr1_2:55875063-55875082 Msa0078400:CDS 40.0%
GATGTCATCACAACGTATGT+AGG + chr1_2:55875132-55875151 Msa0078400:CDS 40.0%
TCATGACGTTCCAACATCTA+TGG + chr1_2:55875164-55875183 Msa0078400:CDS 40.0%
TGGCTATTAGCCATAGATGT+TGG - chr1_2:55875177-55875196 None:intergenic 40.0%
AAAACTAGGCTCCTCAGAAA+TGG - chr1_2:55875214-55875233 None:intergenic 40.0%
!! CCTAGTTCTTCATTTTCGCT+TGG - chr1_2:55873742-55873761 None:intergenic 40.0%
CCAAGCGAAAATGAAGAACT+AGG + chr1_2:55873739-55873758 Msa0078400:CDS 40.0%
AGCGAAAATGAAGAACTAGG+TGG + chr1_2:55873742-55873761 Msa0078400:CDS 40.0%
! TAAAACCTACCTCCTTTTGG+GGG - chr1_2:55873806-55873825 None:intergenic 40.0%
GTCTAAGAGATCAATCTTGC+TGG - chr1_2:55873983-55874002 None:intergenic 40.0%
AAGGAGAAGCAATATCACCT+AGG - chr1_2:55874060-55874079 None:intergenic 40.0%
TAAGAGACATGTCCACTTGT+TGG - chr1_2:55874250-55874269 None:intergenic 40.0%
CATGTCTCTTAAGCTGACAA+TGG + chr1_2:55874259-55874278 Msa0078400:intron 40.0%
TGTCTCTTAAGCTGACAATG+GGG + chr1_2:55874261-55874280 Msa0078400:intron 40.0%
CCCCTTCTCTTGAAATCTAA+AGG - chr1_2:55874473-55874492 None:intergenic 40.0%
CACGGCAGACTCAAATTATT+GGG - chr1_2:55874497-55874516 None:intergenic 40.0%
ACACGGCAGACTCAAATTAT+TGG - chr1_2:55874498-55874517 None:intergenic 40.0%
AATAATTTGAGTCTGCCGTG+TGG + chr1_2:55874497-55874516 Msa0078400:intron 40.0%
ATAATTTGAGTCTGCCGTGT+GGG + chr1_2:55874498-55874517 Msa0078400:intron 40.0%
ACCCGATTTCGATTCTTGTA+TGG - chr1_2:55874549-55874568 None:intergenic 40.0%
! CGTTAAAAGTTGAACGGGTT+GGG - chr1_2:55874629-55874648 None:intergenic 40.0%
! CCAACCCGTTCAACTTTTAA+CGG + chr1_2:55874627-55874646 Msa0078400:intron 40.0%
! CAACCCGTTCAACTTTTAAC+GGG + chr1_2:55874628-55874647 Msa0078400:intron 40.0%
CAACCCGTTAAAAGTTGAAC+GGG - chr1_2:55874634-55874653 None:intergenic 40.0%
CCAACCCGTTAAAAGTTGAA+CGG - chr1_2:55874635-55874654 None:intergenic 40.0%
!!! CGTTCAACTTTTAACGGGTT+GGG + chr1_2:55874633-55874652 Msa0078400:intron 40.0%
!! CGGGTTTGATAGTGAAAATG+TGG - chr1_2:55874672-55874691 None:intergenic 40.0%
!! CAAATGGGTTGATTAGGTTC+GGG - chr1_2:55874691-55874710 None:intergenic 40.0%
!! CGTTCACAAATGGGTTGATT+AGG - chr1_2:55874697-55874716 None:intergenic 40.0%
AACCCATTTGTGAACGGTTT+GGG + chr1_2:55874701-55874720 Msa0078400:intron 40.0%
AACCCAAACCGTTCACAAAT+GGG - chr1_2:55874706-55874725 None:intergenic 40.0%
! ATGTAATTAGTGGACCTGGT+CGG + chr1_2:55874884-55874903 Msa0078400:intron 40.0%
TACTACAAATGTACGGTACC+AGG + chr1_2:55875063-55875082 Msa0078400:CDS 40.0%
GATGTCATCACAACGTATGT+AGG + chr1_2:55875132-55875151 Msa0078400:CDS 40.0%
TCATGACGTTCCAACATCTA+TGG + chr1_2:55875164-55875183 Msa0078400:CDS 40.0%
TGGCTATTAGCCATAGATGT+TGG - chr1_2:55875177-55875196 None:intergenic 40.0%
AAAACTAGGCTCCTCAGAAA+TGG - chr1_2:55875214-55875233 None:intergenic 40.0%
GCATAGGAAACCCTAATCCT+AGG + chr1_2:55874040-55874059 Msa0078400:CDS 45.0%
AAATCGGGTTCCCCTGAATA+GGG + chr1_2:55874560-55874579 Msa0078400:intron 45.0%
!! AACGGGTTGGGTAACTAGTT+TGG - chr1_2:55874617-55874636 None:intergenic 45.0%
CCGTTAAAAGTTGAACGGGT+TGG - chr1_2:55874630-55874649 None:intergenic 45.0%
!! CCGTTCAACTTTTAACGGGT+TGG + chr1_2:55874632-55874651 Msa0078400:intron 45.0%
CAACCCATTTGTGAACGGTT+TGG + chr1_2:55874700-55874719 Msa0078400:intron 45.0%
GAACCCAAACCGTTCACAAA+TGG - chr1_2:55874707-55874726 None:intergenic 45.0%
! GACCCACAAAGTTTGGTTTC+AGG - chr1_2:55874833-55874852 None:intergenic 45.0%
! GCTCATGTAATTAGTGGACC+TGG + chr1_2:55874880-55874899 Msa0078400:intron 45.0%
GTTTCAATCACCAGGTTCGT+GGG + chr1_2:55874906-55874925 Msa0078400:intron 45.0%
ATACGTGAAATTCAGGGGGT+CGG - chr1_2:55874954-55874973 None:intergenic 45.0%
AAAGCGTGTAGAGAGAGCTT+GGG + chr1_2:55875098-55875117 Msa0078400:CDS 45.0%
GCATAGGAAACCCTAATCCT+AGG + chr1_2:55874040-55874059 Msa0078400:CDS 45.0%
AAATCGGGTTCCCCTGAATA+GGG + chr1_2:55874560-55874579 Msa0078400:intron 45.0%
!! AACGGGTTGGGTAACTAGTT+TGG - chr1_2:55874617-55874636 None:intergenic 45.0%
CCGTTAAAAGTTGAACGGGT+TGG - chr1_2:55874630-55874649 None:intergenic 45.0%
!! CCGTTCAACTTTTAACGGGT+TGG + chr1_2:55874632-55874651 Msa0078400:intron 45.0%
CAACCCATTTGTGAACGGTT+TGG + chr1_2:55874700-55874719 Msa0078400:intron 45.0%
GAACCCAAACCGTTCACAAA+TGG - chr1_2:55874707-55874726 None:intergenic 45.0%
! GACCCACAAAGTTTGGTTTC+AGG - chr1_2:55874833-55874852 None:intergenic 45.0%
! GCTCATGTAATTAGTGGACC+TGG + chr1_2:55874880-55874899 Msa0078400:intron 45.0%
GTTTCAATCACCAGGTTCGT+GGG + chr1_2:55874906-55874925 Msa0078400:intron 45.0%
ATACGTGAAATTCAGGGGGT+CGG - chr1_2:55874954-55874973 None:intergenic 45.0%
AAAGCGTGTAGAGAGAGCTT+GGG + chr1_2:55875098-55875117 Msa0078400:CDS 45.0%
TTGTTGAACCTGCCCCCAAA+AGG + chr1_2:55873791-55873810 Msa0078400:CDS 50.0%
TACGGGCAACGAGTTTGCAT+AGG + chr1_2:55874024-55874043 Msa0078400:CDS 50.0%
TTAAGCTGACAATGGGGTGC+AGG + chr1_2:55874267-55874286 Msa0078400:intron 50.0%
TAAGCTGACAATGGGGTGCA+GGG + chr1_2:55874268-55874287 Msa0078400:intron 50.0%
GCCATGCTATACTTCCCACA+CGG - chr1_2:55874515-55874534 None:intergenic 50.0%
GAAATCGGGTTCCCCTGAAT+AGG + chr1_2:55874559-55874578 Msa0078400:intron 50.0%
AATCGGGTTCCCCTGAATAG+GGG + chr1_2:55874561-55874580 Msa0078400:intron 50.0%
! AATAGGGGTGTACACGGGTT+GGG + chr1_2:55874576-55874595 Msa0078400:intron 50.0%
! TTGTGAACGGTTTGGGTTCG+CGG + chr1_2:55874708-55874727 Msa0078400:intron 50.0%
CCAAACTTTGTGGGTCGAGT+CGG + chr1_2:55874837-55874856 Msa0078400:intron 50.0%
CAAACTTTGTGGGTCGAGTC+GGG + chr1_2:55874838-55874857 Msa0078400:intron 50.0%
GGTTTCAATCACCAGGTTCG+TGG + chr1_2:55874905-55874924 Msa0078400:intron 50.0%
CGCTTTCGAATGCTACAACC+TGG - chr1_2:55875084-55875103 None:intergenic 50.0%
! GAAAGCGTGTAGAGAGAGCT+TGG + chr1_2:55875097-55875116 Msa0078400:CDS 50.0%
AGGCTCCTCAGAAATGGTGT+TGG - chr1_2:55875208-55875227 None:intergenic 50.0%
TTGTTGAACCTGCCCCCAAA+AGG + chr1_2:55873791-55873810 Msa0078400:CDS 50.0%
TACGGGCAACGAGTTTGCAT+AGG + chr1_2:55874024-55874043 Msa0078400:CDS 50.0%
TTAAGCTGACAATGGGGTGC+AGG + chr1_2:55874267-55874286 Msa0078400:intron 50.0%
TAAGCTGACAATGGGGTGCA+GGG + chr1_2:55874268-55874287 Msa0078400:intron 50.0%
GCCATGCTATACTTCCCACA+CGG - chr1_2:55874515-55874534 None:intergenic 50.0%
GAAATCGGGTTCCCCTGAAT+AGG + chr1_2:55874559-55874578 Msa0078400:intron 50.0%
AATCGGGTTCCCCTGAATAG+GGG + chr1_2:55874561-55874580 Msa0078400:intron 50.0%
! AATAGGGGTGTACACGGGTT+GGG + chr1_2:55874576-55874595 Msa0078400:intron 50.0%
! TTGTGAACGGTTTGGGTTCG+CGG + chr1_2:55874708-55874727 Msa0078400:intron 50.0%
CCAAACTTTGTGGGTCGAGT+CGG + chr1_2:55874837-55874856 Msa0078400:intron 50.0%
CAAACTTTGTGGGTCGAGTC+GGG + chr1_2:55874838-55874857 Msa0078400:intron 50.0%
GGTTTCAATCACCAGGTTCG+TGG + chr1_2:55874905-55874924 Msa0078400:intron 50.0%
CGCTTTCGAATGCTACAACC+TGG - chr1_2:55875084-55875103 None:intergenic 50.0%
! GAAAGCGTGTAGAGAGAGCT+TGG + chr1_2:55875097-55875116 Msa0078400:CDS 50.0%
AGGCTCCTCAGAAATGGTGT+TGG - chr1_2:55875208-55875227 None:intergenic 50.0%
TTGAACCTGCCCCCAAAAGG+AGG + chr1_2:55873794-55873813 Msa0078400:CDS 55.0%
AAGCTGACAATGGGGTGCAG+GGG + chr1_2:55874269-55874288 Msa0078400:intron 55.0%
! GCCGTGTGGGAAGTATAGCA+TGG + chr1_2:55874511-55874530 Msa0078400:intron 55.0%
CCGTGTACACCCCTATTCAG+GGG - chr1_2:55874573-55874592 None:intergenic 55.0%
! CCCCTGAATAGGGGTGTACA+CGG + chr1_2:55874570-55874589 Msa0078400:intron 55.0%
CCCGTGTACACCCCTATTCA+GGG - chr1_2:55874574-55874593 None:intergenic 55.0%
! CCCTGAATAGGGGTGTACAC+GGG + chr1_2:55874571-55874590 Msa0078400:intron 55.0%
ACCCGTGTACACCCCTATTC+AGG - chr1_2:55874575-55874594 None:intergenic 55.0%
! GAATAGGGGTGTACACGGGT+TGG + chr1_2:55874575-55874594 Msa0078400:intron 55.0%
!! TACACGGGTTGGGTTGGATC+AGG + chr1_2:55874586-55874605 Msa0078400:intron 55.0%
! CCGACTCGACCCACAAAGTT+TGG - chr1_2:55874840-55874859 None:intergenic 55.0%
CCTGGTGATTGAAACCGACC+AGG - chr1_2:55874901-55874920 None:intergenic 55.0%
! CCTGGTCGGTTTCAATCACC+AGG + chr1_2:55874898-55874917 Msa0078400:intron 55.0%
! GTCGGAGTGTTCATGGGTGT+GGG - chr1_2:55874936-55874955 None:intergenic 55.0%
TTGAACCTGCCCCCAAAAGG+AGG + chr1_2:55873794-55873813 Msa0078400:CDS 55.0%
AAGCTGACAATGGGGTGCAG+GGG + chr1_2:55874269-55874288 Msa0078400:intron 55.0%
! GCCGTGTGGGAAGTATAGCA+TGG + chr1_2:55874511-55874530 Msa0078400:intron 55.0%
CCGTGTACACCCCTATTCAG+GGG - chr1_2:55874573-55874592 None:intergenic 55.0%
! CCCCTGAATAGGGGTGTACA+CGG + chr1_2:55874570-55874589 Msa0078400:intron 55.0%
CCCGTGTACACCCCTATTCA+GGG - chr1_2:55874574-55874593 None:intergenic 55.0%
! CCCTGAATAGGGGTGTACAC+GGG + chr1_2:55874571-55874590 Msa0078400:intron 55.0%
ACCCGTGTACACCCCTATTC+AGG - chr1_2:55874575-55874594 None:intergenic 55.0%
! GAATAGGGGTGTACACGGGT+TGG + chr1_2:55874575-55874594 Msa0078400:intron 55.0%
!! TACACGGGTTGGGTTGGATC+AGG + chr1_2:55874586-55874605 Msa0078400:intron 55.0%
! CCGACTCGACCCACAAAGTT+TGG - chr1_2:55874840-55874859 None:intergenic 55.0%
CCTGGTGATTGAAACCGACC+AGG - chr1_2:55874901-55874920 None:intergenic 55.0%
! CCTGGTCGGTTTCAATCACC+AGG + chr1_2:55874898-55874917 Msa0078400:intron 55.0%
! GTCGGAGTGTTCATGGGTGT+GGG - chr1_2:55874936-55874955 None:intergenic 55.0%
ACCTGCCCCCAAAAGGAGGT+AGG + chr1_2:55873798-55873817 Msa0078400:intron 60.0%
!! ACCTACCTCCTTTTGGGGGC+AGG - chr1_2:55873802-55873821 None:intergenic 60.0%
AGCTGACAATGGGGTGCAGG+GGG + chr1_2:55874270-55874289 Msa0078400:intron 60.0%
! TGTGGGTTGACCCACGAACC+TGG - chr1_2:55874919-55874938 None:intergenic 60.0%
! GGTCGGAGTGTTCATGGGTG+TGG - chr1_2:55874937-55874956 None:intergenic 60.0%
! CAGGGGGTCGGAGTGTTCAT+GGG - chr1_2:55874942-55874961 None:intergenic 60.0%
! TCAGGGGGTCGGAGTGTTCA+TGG - chr1_2:55874943-55874962 None:intergenic 60.0%
GCGTGTAGAGAGAGCTTGGG+TGG + chr1_2:55875101-55875120 Msa0078400:CDS 60.0%
ACCTGCCCCCAAAAGGAGGT+AGG + chr1_2:55873798-55873817 Msa0078400:intron 60.0%
!! ACCTACCTCCTTTTGGGGGC+AGG - chr1_2:55873802-55873821 None:intergenic 60.0%
AGCTGACAATGGGGTGCAGG+GGG + chr1_2:55874270-55874289 Msa0078400:intron 60.0%
! TGTGGGTTGACCCACGAACC+TGG - chr1_2:55874919-55874938 None:intergenic 60.0%
! GGTCGGAGTGTTCATGGGTG+TGG - chr1_2:55874937-55874956 None:intergenic 60.0%
! CAGGGGGTCGGAGTGTTCAT+GGG - chr1_2:55874942-55874961 None:intergenic 60.0%
! TCAGGGGGTCGGAGTGTTCA+TGG - chr1_2:55874943-55874962 None:intergenic 60.0%
GCGTGTAGAGAGAGCTTGGG+TGG + chr1_2:55875101-55875120 Msa0078400:CDS 60.0%
!! GGGGTGTACACGGGTTGGGT+TGG + chr1_2:55874580-55874599 Msa0078400:intron 65.0%
!! GGGGTGTACACGGGTTGGGT+TGG + chr1_2:55874580-55874599 Msa0078400:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 55873733 55875266 55873733 ID=Msa0078400;Name=Msa0078400
chr1_2 mRNA 55873733 55875266 55873733 ID=Msa0078400-mRNA-1;Parent=Msa0078400;Name=Msa0078400-mRNA-1;_AED=0.09;_eAED=0.11;_QI=0|0|0|1|1|1|3|0|150
chr1_2 exon 55873733 55873815 55873733 ID=Msa0078400-mRNA-1:exon:17425;Parent=Msa0078400-mRNA-1
chr1_2 exon 55873900 55874061 55873900 ID=Msa0078400-mRNA-1:exon:17426;Parent=Msa0078400-mRNA-1
chr1_2 exon 55875059 55875266 55875059 ID=Msa0078400-mRNA-1:exon:17427;Parent=Msa0078400-mRNA-1
chr1_2 CDS 55873733 55873815 55873733 ID=Msa0078400-mRNA-1:cds;Parent=Msa0078400-mRNA-1
chr1_2 CDS 55873900 55874061 55873900 ID=Msa0078400-mRNA-1:cds;Parent=Msa0078400-mRNA-1
chr1_2 CDS 55875059 55875266 55875059 ID=Msa0078400-mRNA-1:cds;Parent=Msa0078400-mRNA-1
Gene Sequence

>Msa0078400

ATGGAACCAAGCGAAAATGAAGAACTAGGTGGTGATGAAATTGAAGTTGATCGAAAAATTGTTGAACCTGCCCCCAAAAGGAGAAATGCAGAGATCGCGATCTTAAATCAAATAGGTTCTTCATATAGGTCTCCCACAGAGCCTAGAATAAATATAATAACAACCAGCAAGATTGATCTCTTAGACGATGGATATAATTGGAGAAAATACGGGCAACGAGTTTGCATAGGAAACCCTAATCCTAGGAGCTACTACAAATGTACGGTACCAGGTTGTAGCATTCGAAAGCGTGTAGAGAGAGCTTGGGTGGATCCTAAAGATGTCATCACAACGTATGTAGGAAGACATAATCATGACGTTCCAACATCTATGGCTAATAGCCACACTATTTCCAACACCATTTCTGAGGAGCCTAGTTTTGACAATATTGGTAATGATGGCGACAATATTTAA
Protein sequence

>Msa0078400

MEPSENEELGGDEIEVDRKIVEPAPKRRNAEIAILNQIGSSYRSPTEPRINIITTSKIDLLDDGYNWRKYGQRVCIGNPNPRSYYKCTVPGCSIRKRVERAWVDPKDVITTYVGRHNHDVPTSMANSHTISNTISEEPSFDNIGNDGDNI*