AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0078440

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0078440 MtrunA17_Chr1g0188941 80.769 104 20 0 17 120 11 114 9.28e-60 179
Msa0078440 MtrunA17_Chr5g0418191 58.333 120 50 0 8 127 271 390 1.13e-43 148
Msa0078440 MtrunA17_Chr5g0418191 58.065 62 25 1 57 118 151 211 3.00e-18 79.3
Msa0078440 MtrunA17_Chr4g0042831 59.130 115 44 2 4 116 224 337 1.76e-39 136
Msa0078440 MtrunA17_Chr4g0042831 56.452 62 27 0 57 118 145 206 2.38e-16 73.9
Msa0078440 MtrunA17_Chr7g0218081 57.143 112 47 1 6 117 360 470 4.58e-37 132
Msa0078440 MtrunA17_Chr7g0218081 45.045 111 38 4 42 132 198 305 8.58e-18 78.2
Msa0078440 MtrunA17_Chr3g0079691 58.716 109 43 1 9 117 449 555 5.60e-37 132
Msa0078440 MtrunA17_Chr3g0079691 53.226 62 28 1 57 118 280 340 2.26e-14 68.6
Msa0078440 MtrunA17_Chr7g0243891 67.470 83 27 0 34 116 351 433 1.16e-34 125
Msa0078440 MtrunA17_Chr7g0243891 58.333 60 24 1 57 116 216 274 7.99e-17 75.5
Msa0078440 MtrunA17_Chr3g0106491 67.901 81 26 0 38 118 346 426 3.29e-34 124
Msa0078440 MtrunA17_Chr3g0106491 56.250 64 25 2 57 120 198 258 1.21e-16 75.1
Msa0078440 MtrunA17_Chr3g0101131 70.130 77 23 0 41 117 399 475 4.38e-34 124
Msa0078440 MtrunA17_Chr3g0101131 53.226 62 28 1 57 118 243 303 5.31e-16 73.2
Msa0078440 MtrunA17_Chr5g0432161 69.620 79 24 0 38 116 402 480 6.06e-34 124
Msa0078440 MtrunA17_Chr5g0432161 58.333 60 24 1 57 116 244 302 6.75e-16 72.8
Msa0078440 MtrunA17_Chr5g0445311 71.053 76 22 0 41 116 348 423 7.96e-34 123
Msa0078440 MtrunA17_Chr5g0445311 51.613 62 29 1 57 118 200 260 2.40e-15 71.2
Msa0078440 MtrunA17_Chr1g0188971 70.732 82 19 1 1 77 1 82 9.08e-33 110
Msa0078440 MtrunA17_Chr4g0004911 55.238 105 47 0 12 116 291 395 1.08e-32 119
Msa0078440 MtrunA17_Chr4g0004911 55.000 60 27 0 57 116 184 243 9.93e-17 75.1
Msa0078440 MtrunA17_Chr7g0249301 66.250 80 27 0 38 117 273 352 2.63e-32 117
Msa0078440 MtrunA17_Chr7g0249301 52.381 63 27 2 55 116 60 120 1.29e-14 68.9
Msa0078440 MtrunA17_Chr7g0249311 65.000 80 28 0 38 117 373 452 1.14e-31 117
Msa0078440 MtrunA17_Chr7g0249311 53.333 60 27 1 57 116 179 237 1.33e-14 69.3
Msa0078440 MtrunA17_Chr1g0194481 53.488 86 38 1 41 126 142 225 1.95e-29 108
Msa0078440 MtrunA17_Chr4g0051881 58.442 77 32 0 43 119 164 240 9.09e-29 107
Msa0078440 MtrunA17_Chr7g0270191 51.087 92 43 1 38 129 126 215 2.50e-28 105
Msa0078440 MtrunA17_Chr5g0443131 54.545 77 35 0 43 119 143 219 6.58e-27 101
Msa0078440 MtrunA17_Chr3g0129361 57.317 82 34 1 41 122 128 208 7.64e-27 99.4
Msa0078440 MtrunA17_Chr2g0294231 55.422 83 35 1 41 123 187 267 1.05e-26 102
Msa0078440 MtrunA17_Chr7g0263531 51.163 86 42 0 31 116 335 420 1.72e-26 102
Msa0078440 MtrunA17_Chr7g0263531 55.932 59 25 1 58 116 190 247 1.45e-15 71.6
Msa0078440 MtrunA17_Chr1g0188961 72.308 65 9 2 77 132 3 67 8.67e-26 92.4
Msa0078440 MtrunA17_Chr8g0335811 58.442 77 32 0 38 114 135 211 9.90e-26 96.7
Msa0078440 MtrunA17_Chr5g0418781 52.222 90 38 2 41 125 108 197 8.30e-25 95.5
Msa0078440 MtrunA17_Chr8g0383351 58.667 75 30 1 41 114 143 217 1.02e-24 94.4
Msa0078440 MtrunA17_Chr5g0447701 52.632 76 36 0 42 117 237 312 3.59e-23 92.8
Msa0078440 MtrunA17_Chr8g0383251 52.941 68 32 0 49 116 100 167 1.90e-21 84.7
Msa0078440 MtrunA17_Chr4g0074001 39.216 102 61 1 17 118 320 420 3.25e-21 87.8
Msa0078440 MtrunA17_Chr7g0224801 53.846 65 30 0 49 113 85 149 7.90e-21 82.8
Msa0078440 MtrunA17_Chr2g0333851 50.704 71 32 2 55 124 167 235 2.65e-20 84.3
Msa0078440 MtrunA17_Chr3g0129321 40.000 115 59 2 6 116 69 177 5.39e-20 81.3
Msa0078440 MtrunA17_Chr8g0386241 48.611 72 37 0 44 115 90 161 5.48e-20 80.9
Msa0078440 MtrunA17_Chr1g0150801 46.753 77 41 0 37 113 82 158 7.75e-20 80.1
Msa0078440 MtrunA17_Chr1g0189391 51.250 80 35 2 46 124 86 162 9.81e-20 82.8
Msa0078440 MtrunA17_Chr4g0068541 51.316 76 37 0 41 116 192 267 1.12e-19 83.2
Msa0078440 MtrunA17_Chr4g0060271 55.556 63 27 1 55 116 253 315 1.85e-19 83.2
Msa0078440 MtrunA17_Chr4g0051181 42.268 97 54 2 22 116 207 303 5.36e-19 81.6
Msa0078440 MtrunA17_Chr6g0485431 52.113 71 33 1 54 123 151 221 6.32e-19 80.9
Msa0078440 MtrunA17_Chr7g0238921 59.649 57 23 0 57 113 124 180 8.93e-19 80.1
Msa0078440 MtrunA17_Chr7g0248721 41.489 94 48 2 38 125 122 214 1.31e-18 78.2
Msa0078440 MtrunA17_Chr5g0432071 51.471 68 32 1 57 124 104 170 2.13e-18 77.4
Msa0078440 MtrunA17_Chr7g0216891 40.187 107 62 2 8 113 171 276 2.59e-18 79.7
Msa0078440 MtrunA17_Chr3g0099641 45.455 77 41 1 41 116 235 311 2.72e-18 79.7
Msa0078440 MtrunA17_Chr4g0001361 41.176 102 47 4 38 128 133 232 5.95e-18 77.8
Msa0078440 MtrunA17_Chr2g0288871 40.594 101 57 2 19 116 265 365 1.08e-17 77.8
Msa0078440 MtrunA17_Chr3g0136961 50.847 59 28 1 56 113 137 195 1.34e-17 76.6
Msa0078440 MtrunA17_Chr1g0150281 50.877 57 27 1 58 113 141 197 1.35e-17 76.6
Msa0078440 MtrunA17_Chr5g0401821 46.835 79 41 1 38 115 180 258 1.48e-17 76.3
Msa0078440 MtrunA17_Chr2g0322391 45.122 82 44 1 41 121 333 414 1.71e-17 77.4
Msa0078440 MtrunA17_Chr7g0270831 48.052 77 39 1 41 116 200 276 2.05e-17 77.0
Msa0078440 MtrunA17_Chr1g0147881 45.882 85 45 1 38 121 243 327 3.41e-17 75.9
Msa0078440 MtrunA17_Chr2g0302391 46.988 83 43 1 35 116 189 271 4.29e-17 76.3
Msa0078440 MtrunA17_Chr4g0075201 46.753 77 40 1 41 116 251 327 5.00e-17 75.9
Msa0078440 MtrunA17_Chr1g0150271 36.893 103 55 3 24 116 59 161 6.29e-17 74.3
Msa0078440 MtrunA17_Chr4g0025061 44.444 81 44 1 42 121 345 425 1.97e-16 74.3
Msa0078440 MtrunA17_Chr4g0053281 45.570 79 42 1 38 115 247 325 4.49e-16 72.8
Msa0078440 MtrunA17_Chr5g0447711 38.158 76 47 0 42 117 215 290 1.30e-15 71.2
Msa0078440 MtrunA17_Chr1g0184691 44.578 83 44 2 37 117 273 355 1.49e-15 71.6
Msa0078440 MtrunA17_Chr4g0071521 45.455 77 41 1 38 113 226 302 1.74e-15 71.2
Msa0078440 MtrunA17_Chr4g0025051 41.000 100 54 2 23 121 305 400 2.31e-15 71.2
Msa0078440 MtrunA17_Chr3g0139021 45.333 75 40 1 41 114 298 372 2.55e-14 68.2
Msa0078440 MtrunA17_Chr2g0319961 46.774 62 32 1 58 118 81 142 2.59e-14 67.4
Msa0078440 MtrunA17_Chr2g0289181 44.595 74 40 1 45 117 2 75 9.64e-14 65.5
Msa0078440 MtrunA17_Chr7g0228941 44.118 68 37 1 48 114 43 110 1.29e-13 62.8
Msa0078440 MtrunA17_Chr7g0270051 47.619 63 32 1 58 119 54 116 1.72e-13 65.1
Msa0078440 MtrunA17_Chr2g0284321 48.387 62 31 1 58 118 36 97 1.81e-13 64.3
Msa0078440 MtrunA17_Chr8g0348311 40.426 94 50 2 30 117 123 216 2.07e-13 65.5
Msa0078440 MtrunA17_Chr2g0293481 48.438 64 32 1 55 117 265 328 3.27e-13 65.1
Msa0078440 MtrunA17_Chr8g0387501 46.875 64 33 1 55 117 127 190 3.70e-13 64.3
Msa0078440 MtrunA17_Chr8g0379461 48.333 60 30 1 58 116 77 136 6.90e-13 63.2
Msa0078440 MtrunA17_Chr4g0024391 44.737 76 39 2 44 118 216 289 2.17e-12 62.8
Msa0078440 MtrunA17_Chr7g0248691 49.180 61 30 1 58 117 155 215 5.24e-12 61.6
Msa0078440 MtrunA17_Chr1g0202461 43.077 65 36 1 54 117 258 322 3.29e-11 59.3
Msa0078440 MtrunA17_Chr5g0419241 51.163 43 21 0 41 83 61 103 6.94e-11 55.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0078440 AT2G03340.1 61.983 121 40 1 2 116 354 474 2.43e-42 146
Msa0078440 AT2G03340.1 56.667 60 25 1 57 116 250 308 1.14e-15 72.4
Msa0078440 AT1G13960.2 58.197 122 44 2 2 116 194 315 5.12e-42 142
Msa0078440 AT1G13960.2 56.667 60 25 1 57 116 76 134 1.23e-16 75.1
Msa0078440 AT1G13960.1 58.197 122 44 2 2 116 347 468 2.87e-41 143
Msa0078440 AT1G13960.1 56.667 60 25 1 57 116 229 287 8.22e-17 75.9
Msa0078440 AT5G56270.1 64.211 95 33 1 22 116 453 546 8.40e-37 132
Msa0078440 AT5G56270.1 54.839 62 27 1 57 118 273 333 5.28e-16 73.6
Msa0078440 AT5G07100.2 69.231 78 24 0 41 118 125 202 8.82e-37 125
Msa0078440 AT5G07100.2 53.333 60 28 0 57 116 24 83 1.51e-16 72.8
Msa0078440 AT5G07100.4 69.231 78 24 0 41 118 125 202 8.82e-37 125
Msa0078440 AT5G07100.4 53.333 60 28 0 57 116 24 83 1.51e-16 72.8
Msa0078440 AT5G07100.5 69.231 78 24 0 41 118 125 202 8.82e-37 125
Msa0078440 AT5G07100.5 53.333 60 28 0 57 116 24 83 1.51e-16 72.8
Msa0078440 AT5G07100.3 69.231 78 24 0 41 118 125 202 8.82e-37 125
Msa0078440 AT5G07100.3 53.333 60 28 0 57 116 24 83 1.51e-16 72.8
Msa0078440 AT5G07100.1 69.231 78 24 0 41 118 218 295 4.56e-36 125
Msa0078440 AT5G07100.1 53.333 60 28 0 57 116 117 176 2.19e-16 73.9
Msa0078440 AT3G01080.1 59.783 92 37 0 25 116 274 365 1.57e-35 126
Msa0078440 AT3G01080.1 53.333 60 27 1 57 116 167 225 5.94e-14 67.4
Msa0078440 AT3G01080.2 59.783 92 37 0 25 116 312 403 2.06e-35 127
Msa0078440 AT3G01080.2 53.333 60 27 1 57 116 205 263 5.67e-14 67.8
Msa0078440 AT4G26640.5 58.416 101 40 1 17 117 167 265 3.37e-34 122
Msa0078440 AT4G26640.5 51.562 64 30 1 55 118 33 95 7.80e-16 72.8
Msa0078440 AT4G26640.6 58.416 101 40 1 17 117 167 265 3.37e-34 122
Msa0078440 AT4G26640.6 51.562 64 30 1 55 118 33 95 7.80e-16 72.8
Msa0078440 AT4G26640.4 58.416 101 40 1 17 117 167 265 3.37e-34 122
Msa0078440 AT4G26640.4 51.562 64 30 1 55 118 33 95 7.80e-16 72.8
Msa0078440 AT4G26640.3 58.416 101 40 1 17 117 167 265 3.37e-34 122
Msa0078440 AT4G26640.3 51.562 64 30 1 55 118 33 95 7.80e-16 72.8
Msa0078440 AT4G26640.1 58.416 101 40 1 17 117 271 369 7.98e-34 123
Msa0078440 AT4G26640.1 51.562 64 30 1 55 118 137 199 6.90e-16 73.2
Msa0078440 AT4G26640.7 58.416 101 40 1 17 117 303 401 9.99e-34 123
Msa0078440 AT4G26640.7 51.562 64 30 1 55 118 169 231 6.43e-16 73.2
Msa0078440 AT4G26640.2 58.416 101 40 1 17 117 343 441 1.27e-33 123
Msa0078440 AT4G26640.2 51.562 64 30 1 55 118 209 271 6.34e-16 73.2
Msa0078440 AT2G38470.1 55.238 105 47 0 12 116 317 421 2.22e-33 122
Msa0078440 AT2G38470.1 56.667 60 25 1 57 116 184 242 2.27e-15 71.6
Msa0078440 AT4G26440.1 56.436 101 44 0 16 116 331 431 6.29e-33 121
Msa0078440 AT4G26440.1 53.226 62 28 1 57 118 178 238 3.27e-15 71.2
Msa0078440 AT2G30250.1 60.759 79 31 0 41 119 312 390 3.01e-30 112
Msa0078440 AT2G30250.1 51.667 60 28 1 57 116 166 224 4.55e-13 65.1
Msa0078440 AT4G18170.1 45.763 118 55 2 11 119 117 234 2.12e-29 108
Msa0078440 AT1G29860.1 56.962 79 34 0 41 119 120 198 2.77e-28 105
Msa0078440 AT2G47260.1 52.174 92 41 1 41 129 158 249 9.73e-28 104
Msa0078440 AT4G39410.1 59.740 77 31 0 38 114 204 280 2.70e-26 100
Msa0078440 AT5G46350.1 56.000 75 33 0 43 117 169 243 3.84e-26 100
Msa0078440 AT2G44745.1 59.211 76 31 0 38 113 126 201 5.60e-26 97.4
Msa0078440 AT5G49520.1 56.579 76 33 0 41 116 205 280 1.15e-24 97.4
Msa0078440 AT3G01970.1 53.333 75 35 0 44 118 52 126 1.19e-24 92.4
Msa0078440 AT3G62340.1 50.562 89 42 1 43 131 104 190 1.56e-24 95.1
Msa0078440 AT2G04880.1 48.101 79 41 0 38 116 288 366 8.98e-24 95.5
Msa0078440 AT2G04880.1 51.515 66 29 2 55 120 109 171 1.42e-15 72.4
Msa0078440 AT2G04880.2 48.101 79 41 0 38 116 264 342 9.09e-24 95.5
Msa0078440 AT2G04880.2 51.515 66 29 2 55 120 109 171 1.52e-15 72.0
Msa0078440 AT1G69310.4 53.333 75 35 0 41 115 131 205 1.24e-23 92.8
Msa0078440 AT1G69310.2 53.333 75 35 0 41 115 131 205 1.24e-23 92.8
Msa0078440 AT1G69310.1 53.333 75 35 0 41 115 131 205 1.24e-23 92.8
Msa0078440 AT5G41570.1 43.564 101 51 1 38 132 79 179 1.31e-23 90.5
Msa0078440 AT5G26170.1 53.521 71 33 0 44 114 100 170 1.78e-22 87.4
Msa0078440 AT1G64000.1 48.193 83 37 1 49 125 106 188 3.10e-22 87.4
Msa0078440 AT5G13080.1 51.429 70 34 0 44 113 54 123 9.36e-22 84.7
Msa0078440 AT2G37260.2 59.375 64 26 0 52 115 262 325 2.01e-21 87.8
Msa0078440 AT2G37260.2 50.000 74 32 2 48 117 70 142 2.52e-15 71.2
Msa0078440 AT2G37260.3 59.375 64 26 0 52 115 264 327 2.03e-21 87.8
Msa0078440 AT2G37260.3 50.000 74 32 2 48 117 72 144 2.45e-15 71.2
Msa0078440 AT2G37260.1 59.375 64 26 0 52 115 344 407 2.34e-21 88.6
Msa0078440 AT2G37260.1 50.000 74 32 2 48 117 152 224 2.25e-15 71.6
Msa0078440 AT4G30935.1 40.777 103 58 2 17 118 292 392 6.48e-21 87.4
Msa0078440 AT5G64810.1 56.923 65 28 0 49 113 102 166 6.90e-21 84.0
Msa0078440 AT2G46130.1 41.489 94 49 1 38 125 11 104 6.92e-21 81.6
Msa0078440 AT1G55600.1 50.000 88 43 1 29 116 280 366 7.13e-21 87.4
Msa0078440 AT2G21900.1 41.837 98 53 2 26 119 74 171 1.60e-20 83.2
Msa0078440 AT1G80840.1 51.515 66 31 1 55 119 144 209 3.68e-20 84.0
Msa0078440 AT1G68150.1 41.905 105 58 2 15 116 191 295 4.41e-20 84.7
Msa0078440 AT2G25000.2 47.619 63 32 1 55 116 101 163 3.72e-19 80.1
Msa0078440 AT2G25000.4 47.619 63 32 1 55 116 101 163 3.72e-19 80.1
Msa0078440 AT2G25000.3 47.619 63 32 1 55 116 123 185 7.60e-19 79.7
Msa0078440 AT2G25000.1 47.619 63 32 1 55 116 144 206 1.05e-18 79.7
Msa0078440 AT1G69310.3 49.333 75 34 1 41 115 131 201 1.30e-18 79.7
Msa0078440 AT1G62300.1 38.182 110 61 2 14 116 263 372 2.02e-18 80.5
Msa0078440 AT4G04450.2 43.434 99 54 2 19 116 161 258 4.40e-18 79.3
Msa0078440 AT4G31800.2 47.619 63 32 1 55 116 109 171 5.20e-18 77.4
Msa0078440 AT4G12020.6 53.659 82 32 1 2 77 580 661 5.37e-18 79.3
Msa0078440 AT4G12020.6 47.541 61 31 1 56 116 467 526 5.43e-12 62.0
Msa0078440 AT4G12020.8 53.659 82 32 1 2 77 580 661 5.37e-18 79.3
Msa0078440 AT4G12020.8 47.541 61 31 1 56 116 467 526 5.43e-12 62.0
Msa0078440 AT5G15130.1 52.381 63 29 1 55 116 225 287 5.63e-18 79.3
Msa0078440 AT4G12020.7 53.659 82 32 1 2 77 580 661 5.64e-18 79.3
Msa0078440 AT4G12020.7 47.541 61 31 1 56 116 467 526 5.64e-12 62.0
Msa0078440 AT4G12020.1 53.659 82 32 1 2 77 580 661 5.64e-18 79.3
Msa0078440 AT4G12020.1 47.541 61 31 1 56 116 467 526 5.64e-12 62.0
Msa0078440 AT4G12020.9 53.659 82 32 1 2 77 580 661 5.64e-18 79.3
Msa0078440 AT4G12020.9 47.541 61 31 1 56 116 467 526 5.64e-12 62.0
Msa0078440 AT4G12020.10 53.659 82 32 1 2 77 580 661 5.81e-18 79.3
Msa0078440 AT4G12020.10 47.541 61 31 1 56 116 467 526 6.05e-12 62.0
Msa0078440 AT4G12020.3 53.659 82 32 1 2 77 580 661 6.10e-18 79.3
Msa0078440 AT4G12020.3 47.541 61 31 1 56 116 467 526 6.17e-12 62.0
Msa0078440 AT5G15130.2 52.381 63 29 1 55 116 183 245 6.48e-18 79.0
Msa0078440 AT4G04450.1 43.434 99 54 2 19 116 255 352 6.64e-18 79.0
Msa0078440 AT4G31800.1 48.333 60 30 1 55 113 174 233 8.45e-18 77.8
Msa0078440 AT1G18860.1 45.122 82 37 2 43 116 218 299 1.93e-17 77.8
Msa0078440 AT4G31550.1 50.000 78 38 1 38 114 227 304 2.55e-17 76.6
Msa0078440 AT4G31550.2 50.000 78 38 1 38 114 226 303 2.83e-17 76.3
Msa0078440 AT4G22070.4 48.052 77 39 1 41 116 281 357 3.18e-17 77.0
Msa0078440 AT4G22070.3 48.052 77 39 1 41 116 281 357 3.18e-17 77.0
Msa0078440 AT4G22070.2 48.052 77 39 1 41 116 281 357 3.18e-17 77.0
Msa0078440 AT4G22070.1 48.052 77 39 1 41 116 281 357 3.18e-17 77.0
Msa0078440 AT4G12020.11 62.295 61 23 0 17 77 601 661 5.83e-17 76.3
Msa0078440 AT4G12020.11 47.541 61 31 1 56 116 467 526 2.04e-11 60.5
Msa0078440 AT4G12020.5 62.295 61 23 0 17 77 534 594 6.36e-17 76.3
Msa0078440 AT4G12020.5 47.541 61 31 1 56 116 400 459 1.51e-11 60.8
Msa0078440 AT4G12020.2 62.295 61 23 0 17 77 601 661 6.43e-17 76.3
Msa0078440 AT4G12020.2 47.541 61 31 1 56 116 467 526 1.46e-11 60.8
Msa0078440 AT5G43290.1 55.932 59 26 0 55 113 112 170 6.46e-17 74.7
Msa0078440 AT4G12020.4 62.295 61 23 0 17 77 601 661 6.55e-17 76.3
Msa0078440 AT4G12020.4 47.541 61 31 1 56 116 467 526 1.43e-11 60.8
Msa0078440 AT4G01720.1 45.455 77 41 1 41 116 223 299 3.90e-16 73.9
Msa0078440 AT2G46130.2 37.755 98 51 2 34 125 7 100 7.26e-16 68.6
Msa0078440 AT2G23320.1 50.725 69 33 1 48 115 231 299 1.64e-15 71.6
Msa0078440 AT2G24570.1 45.679 81 43 1 38 117 224 304 1.77e-15 71.6
Msa0078440 AT4G24240.1 44.304 79 43 1 38 115 262 340 1.92e-15 71.6
Msa0078440 AT2G30590.1 46.154 78 41 1 37 113 293 370 4.07e-15 70.9
Msa0078440 AT4G23550.1 40.260 77 45 1 42 117 125 201 1.19e-14 68.9
Msa0078440 AT3G01080.3 53.333 60 27 1 57 116 205 263 3.40e-14 67.8
Msa0078440 AT4G01250.1 52.459 61 28 1 58 117 129 189 6.72e-14 67.0
Msa0078440 AT5G28650.1 43.590 78 43 1 38 114 243 320 9.14e-14 66.6
Msa0078440 AT3G04670.1 43.590 78 43 1 38 114 243 320 1.47e-13 66.2
Msa0078440 AT2G34830.1 48.438 64 32 1 55 117 213 276 4.68e-13 65.1
Msa0078440 AT2G34830.2 48.438 64 32 1 55 117 222 285 4.71e-13 65.1
Msa0078440 AT5G52830.1 42.857 84 46 2 35 117 144 226 5.78e-13 64.7
Msa0078440 AT1G69810.1 46.032 63 32 2 56 116 202 264 6.73e-13 64.7
Msa0078440 AT1G69810.2 39.744 78 45 2 41 116 129 206 7.07e-13 64.3
Msa0078440 AT5G45050.2 36.471 85 53 1 34 117 1129 1213 1.83e-12 63.5
Msa0078440 AT5G45050.1 36.471 85 53 1 34 117 1157 1241 1.85e-12 63.5
Msa0078440 AT1G30650.1 48.485 66 31 2 55 119 215 278 2.09e-12 63.2
Msa0078440 AT5G45050.4 36.471 85 53 1 34 117 1018 1102 2.12e-12 63.2
Msa0078440 AT1G29280.1 48.333 60 30 1 58 116 75 134 2.37e-12 62.4
Msa0078440 AT3G58710.1 45.902 61 32 1 58 117 72 132 3.34e-12 62.0
Msa0078440 AT3G58710.2 45.902 61 32 1 58 117 71 131 3.59e-12 62.0

Find 34 sgRNAs with CRISPR-Local

Find 306 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGAAATATCACCTAGGATT+AGG 0.273726 1_2:+55961927 None:intergenic
TACATTGTTATGACATCTTT+AGG 0.283273 1_2:+55960530 None:intergenic
GTTGTTATTATGATATTTCT+AGG 0.305063 1_2:+55962020 None:intergenic
ATCAAATAGCTTCTTCATAT+AGG 0.310605 1_2:-55962055 Msa0078440:CDS
TCAAATAGCTTCTTCATATA+GGG 0.328504 1_2:-55962054 Msa0078440:CDS
TCTTAGACGATGGATATAAT+TGG 0.350156 1_2:-55961983 Msa0078440:CDS
GAACTAGGTTGTGATGAAAT+TGG 0.383740 1_2:-55962210 Msa0078440:CDS
TATGATATTTCTAGGCTCTC+TGG 0.387148 1_2:+55962028 None:intergenic
AGAAATATCACCTAGGATTA+GGG 0.390952 1_2:+55961928 None:intergenic
GGATATAATTGGAGAAAATA+CGG 0.397885 1_2:-55961972 Msa0078440:CDS
ATTGTTGAGGAGCCTAGTTT+TGG 0.427887 1_2:-55960473 Msa0078440:CDS
AAACTAGGCTCCTCAACAAT+TGG 0.452424 1_2:+55960476 None:intergenic
CCTAGTTCTGCATTGTCGCT+TGG 0.455776 1_2:+55962225 None:intergenic
GAGTTGAACCTGGCCCCAAT+AGG 0.469252 1_2:-55962188 Msa0078440:CDS
GAGATTGATGTCTTAGACGA+TGG 0.470244 1_2:-55961993 Msa0078440:CDS
GAAAGTGTGTAGAGAGAGCT+TGG 0.483812 1_2:-55960559 Msa0078440:CDS
ACCTACCTCCTATTGGGGCC+AGG 0.505111 1_2:+55962180 None:intergenic
CCAAGCGACAATGCAGAACT+AGG 0.516569 1_2:-55962225 Msa0078440:CDS
ATGATATTTCTAGGCTCTCT+GGG 0.523221 1_2:+55962029 None:intergenic
GCAAAGGAAACCCTAATCCT+AGG 0.526000 1_2:-55961938 Msa0078440:intron
AGAAAATACGGGCAACGAGT+TGG 0.529346 1_2:-55961960 Msa0078440:CDS
GATATAATTGGAGAAAATAC+GGG 0.530666 1_2:-55961971 Msa0078440:CDS
GTCTAAGACATCAATCTCAC+TGG 0.554144 1_2:+55961998 None:intergenic
GGCTCCTCAACAATTGGTGT+TGG 0.561373 1_2:+55960482 None:intergenic
GATGAAATTGGAGTTGAACC+TGG 0.567212 1_2:-55962198 Msa0078440:CDS
TTGAACCTGGCCCCAATAGG+AGG 0.579170 1_2:-55962185 Msa0078440:intron
TACGGGCAACGAGTTGGCAA+AGG 0.582482 1_2:-55961954 Msa0078440:CDS
CACTTTCGAATGCTACAACT+CGG 0.597063 1_2:+55960575 None:intergenic
AAAGTGTGTAGAGAGAGCTT+GGG 0.618577 1_2:-55960558 Msa0078440:CDS
TCGCCACCATTACCAAAACT+AGG 0.624343 1_2:+55960461 None:intergenic
GTGTGTAGAGAGAGCTTGGG+CGG 0.626402 1_2:-55960555 Msa0078440:CDS
CGTGCCAACACCAATTGTTG+AGG 0.644301 1_2:-55960486 Msa0078440:CDS
TTGCAGAAATACAGAGATCG+CGG 0.661373 1_2:-55962084 Msa0078440:intron
GATGTCATAACAATGTACGA+AGG 0.684441 1_2:-55960524 Msa0078440:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGAATAATTGAATTCATTTT+TGG + chr1_2:55960856-55960875 None:intergenic 15.0%
!! AATTATTCACATTTATTAGT+AGG - chr1_2:55960867-55960886 Msa0078440:intron 15.0%
!!! TTTTATACTTTGTCAAAATT+TGG - chr1_2:55961109-55961128 Msa0078440:intron 15.0%
!! TTTATACTTTGTCAAAATTT+GGG - chr1_2:55961110-55961129 Msa0078440:intron 15.0%
!! ATATCAACTTAATTATGAAT+GGG - chr1_2:55961393-55961412 Msa0078440:intron 15.0%
!! TTATAAGTAAATATGTAGTT+TGG - chr1_2:55961489-55961508 Msa0078440:intron 15.0%
!! AACAAATAATACATGAAATT+CGG + chr1_2:55961986-55962005 None:intergenic 15.0%
!!! AATTGTTTTCTTCTAAAAAA+AGG - chr1_2:55962022-55962041 Msa0078440:CDS 15.0%
!!! TGAATAATTGAATTCATTTT+TGG + chr1_2:55960856-55960875 None:intergenic 15.0%
!! AATTATTCACATTTATTAGT+AGG - chr1_2:55960867-55960886 Msa0078440:intron 15.0%
!!! TTTTATACTTTGTCAAAATT+TGG - chr1_2:55961109-55961128 Msa0078440:intron 15.0%
!! TTTATACTTTGTCAAAATTT+GGG - chr1_2:55961110-55961129 Msa0078440:intron 15.0%
!! ATATCAACTTAATTATGAAT+GGG - chr1_2:55961393-55961412 Msa0078440:intron 15.0%
!! TTATAAGTAAATATGTAGTT+TGG - chr1_2:55961489-55961508 Msa0078440:intron 15.0%
!! AACAAATAATACATGAAATT+CGG + chr1_2:55961986-55962005 None:intergenic 15.0%
!!! AATTGTTTTCTTCTAAAAAA+AGG - chr1_2:55962022-55962041 Msa0078440:CDS 15.0%
!! TGTAAACACAAATATGTTTA+TGG - chr1_2:55960531-55960550 Msa0078440:CDS 20.0%
!!! GTTGTTATTATGATATTTCT+AGG + chr1_2:55960665-55960684 None:intergenic 20.0%
!! TAGATAAAATTAAAGTGTGA+AGG + chr1_2:55960783-55960802 None:intergenic 20.0%
!! CCACTTATTAATAAACTATA+TGG + chr1_2:55960941-55960960 None:intergenic 20.0%
!! CCATATAGTTTATTAATAAG+TGG - chr1_2:55960938-55960957 Msa0078440:intron 20.0%
!! AATCCAAGAATTATACTATA+GGG + chr1_2:55961005-55961024 None:intergenic 20.0%
!! TAATCCAAGAATTATACTAT+AGG + chr1_2:55961006-55961025 None:intergenic 20.0%
!!! TTTTACATATGTTCAACTTA+AGG + chr1_2:55961076-55961095 None:intergenic 20.0%
!!! TTAAGTTGAACATATGTAAA+AGG - chr1_2:55961075-55961094 Msa0078440:intron 20.0%
!!! AATTCCATGTATTATTGTTT+TGG - chr1_2:55961137-55961156 Msa0078440:intron 20.0%
!!! ATTCCATGTATTATTGTTTT+GGG - chr1_2:55961138-55961157 Msa0078440:intron 20.0%
!!! ATAATTAAGTTGATATGGTA+CGG + chr1_2:55961389-55961408 None:intergenic 20.0%
!!! CATTCATAATTAAGTTGATA+TGG + chr1_2:55961394-55961413 None:intergenic 20.0%
!! CATATCAACTTAATTATGAA+TGG - chr1_2:55961392-55961411 Msa0078440:intron 20.0%
!! TTGTAAATGAAATTAGAGTT+AGG - chr1_2:55961524-55961543 Msa0078440:intron 20.0%
!!! ATATGTAATCAAGTTTTCTT+GGG + chr1_2:55961567-55961586 None:intergenic 20.0%
!!! ATACCTGAAACTAAATTTTA+TGG - chr1_2:55961852-55961871 Msa0078440:intron 20.0%
!!! TACCTGAAACTAAATTTTAT+GGG - chr1_2:55961853-55961872 Msa0078440:intron 20.0%
!! TTACATGAACTTATCATTTA+CGG + chr1_2:55961895-55961914 None:intergenic 20.0%
!! ACAAATAATACATGAAATTC+GGG + chr1_2:55961985-55962004 None:intergenic 20.0%
!! TGTAAACACAAATATGTTTA+TGG - chr1_2:55960531-55960550 Msa0078440:CDS 20.0%
!!! GTTGTTATTATGATATTTCT+AGG + chr1_2:55960665-55960684 None:intergenic 20.0%
!! TAGATAAAATTAAAGTGTGA+AGG + chr1_2:55960783-55960802 None:intergenic 20.0%
!! CCACTTATTAATAAACTATA+TGG + chr1_2:55960941-55960960 None:intergenic 20.0%
!! CCATATAGTTTATTAATAAG+TGG - chr1_2:55960938-55960957 Msa0078440:intron 20.0%
!! AATCCAAGAATTATACTATA+GGG + chr1_2:55961005-55961024 None:intergenic 20.0%
!! TAATCCAAGAATTATACTAT+AGG + chr1_2:55961006-55961025 None:intergenic 20.0%
!!! TTTTACATATGTTCAACTTA+AGG + chr1_2:55961076-55961095 None:intergenic 20.0%
!!! TTAAGTTGAACATATGTAAA+AGG - chr1_2:55961075-55961094 Msa0078440:intron 20.0%
!!! AATTCCATGTATTATTGTTT+TGG - chr1_2:55961137-55961156 Msa0078440:intron 20.0%
!!! ATTCCATGTATTATTGTTTT+GGG - chr1_2:55961138-55961157 Msa0078440:intron 20.0%
!!! ATAATTAAGTTGATATGGTA+CGG + chr1_2:55961389-55961408 None:intergenic 20.0%
!!! CATTCATAATTAAGTTGATA+TGG + chr1_2:55961394-55961413 None:intergenic 20.0%
!! CATATCAACTTAATTATGAA+TGG - chr1_2:55961392-55961411 Msa0078440:intron 20.0%
!! TTGTAAATGAAATTAGAGTT+AGG - chr1_2:55961524-55961543 Msa0078440:intron 20.0%
!!! ATATGTAATCAAGTTTTCTT+GGG + chr1_2:55961567-55961586 None:intergenic 20.0%
!!! ATACCTGAAACTAAATTTTA+TGG - chr1_2:55961852-55961871 Msa0078440:intron 20.0%
!!! TACCTGAAACTAAATTTTAT+GGG - chr1_2:55961853-55961872 Msa0078440:intron 20.0%
!! TTACATGAACTTATCATTTA+CGG + chr1_2:55961895-55961914 None:intergenic 20.0%
!! ACAAATAATACATGAAATTC+GGG + chr1_2:55961985-55962004 None:intergenic 20.0%
! AAACACAAATATGTTTATGG+TGG - chr1_2:55960534-55960553 Msa0078440:CDS 25.0%
! ATCAAATAGCTTCTTCATAT+AGG - chr1_2:55960627-55960646 Msa0078440:intron 25.0%
! TCAAATAGCTTCTTCATATA+GGG - chr1_2:55960628-55960647 Msa0078440:intron 25.0%
! GGATATAATTGGAGAAAATA+CGG - chr1_2:55960710-55960729 Msa0078440:intron 25.0%
! GATATAATTGGAGAAAATAC+GGG - chr1_2:55960711-55960730 Msa0078440:intron 25.0%
! TGAATTATCCATGAATGTTA+TGG - chr1_2:55960804-55960823 Msa0078440:intron 25.0%
! AAAGATAACCATAACATTCA+TGG + chr1_2:55960815-55960834 None:intergenic 25.0%
! TAGTTTATTAATAAGTGGAC+AGG - chr1_2:55960943-55960962 Msa0078440:intron 25.0%
! ATCCAAGAATTATACTATAG+GGG + chr1_2:55961004-55961023 None:intergenic 25.0%
! TTAAGGTTACAAATTACTAC+TGG + chr1_2:55961059-55961078 None:intergenic 25.0%
!!! TAATTAAGTTGATATGGTAC+GGG + chr1_2:55961388-55961407 None:intergenic 25.0%
!! AACTTAATTATGAATGGGTT+GGG - chr1_2:55961398-55961417 Msa0078440:intron 25.0%
!! CATATGTAATCAAGTTTTCT+TGG + chr1_2:55961568-55961587 None:intergenic 25.0%
! ATTGAGCTCAGATTAAAAAT+AGG - chr1_2:55961702-55961721 Msa0078440:intron 25.0%
! GTCCAACCAAAAAATAATAT+GGG - chr1_2:55961794-55961813 Msa0078440:intron 25.0%
!!! AACTTGCCCATATTATTTTT+TGG + chr1_2:55961803-55961822 None:intergenic 25.0%
! AAAAAATAATATGGGCAAGT+TGG - chr1_2:55961802-55961821 Msa0078440:intron 25.0%
!! TGAAACTAAATTTTATGGGT+GGG - chr1_2:55961857-55961876 Msa0078440:intron 25.0%
! TACATGAACTTATCATTTAC+GGG + chr1_2:55961894-55961913 None:intergenic 25.0%
! GTTCATGTAATTAGTGAATT+TGG - chr1_2:55961905-55961924 Msa0078440:intron 25.0%
! CAAATAATACATGAAATTCG+GGG + chr1_2:55961984-55962003 None:intergenic 25.0%
! TACATTGTTATGACATCTTT+AGG + chr1_2:55962155-55962174 None:intergenic 25.0%
! AAACACAAATATGTTTATGG+TGG - chr1_2:55960534-55960553 Msa0078440:CDS 25.0%
! ATCAAATAGCTTCTTCATAT+AGG - chr1_2:55960627-55960646 Msa0078440:intron 25.0%
! TCAAATAGCTTCTTCATATA+GGG - chr1_2:55960628-55960647 Msa0078440:intron 25.0%
! GGATATAATTGGAGAAAATA+CGG - chr1_2:55960710-55960729 Msa0078440:intron 25.0%
! GATATAATTGGAGAAAATAC+GGG - chr1_2:55960711-55960730 Msa0078440:intron 25.0%
! TGAATTATCCATGAATGTTA+TGG - chr1_2:55960804-55960823 Msa0078440:intron 25.0%
! AAAGATAACCATAACATTCA+TGG + chr1_2:55960815-55960834 None:intergenic 25.0%
! TAGTTTATTAATAAGTGGAC+AGG - chr1_2:55960943-55960962 Msa0078440:intron 25.0%
! ATCCAAGAATTATACTATAG+GGG + chr1_2:55961004-55961023 None:intergenic 25.0%
! TTAAGGTTACAAATTACTAC+TGG + chr1_2:55961059-55961078 None:intergenic 25.0%
!!! TAATTAAGTTGATATGGTAC+GGG + chr1_2:55961388-55961407 None:intergenic 25.0%
!! AACTTAATTATGAATGGGTT+GGG - chr1_2:55961398-55961417 Msa0078440:intron 25.0%
!! CATATGTAATCAAGTTTTCT+TGG + chr1_2:55961568-55961587 None:intergenic 25.0%
! ATTGAGCTCAGATTAAAAAT+AGG - chr1_2:55961702-55961721 Msa0078440:intron 25.0%
! GTCCAACCAAAAAATAATAT+GGG - chr1_2:55961794-55961813 Msa0078440:intron 25.0%
!!! AACTTGCCCATATTATTTTT+TGG + chr1_2:55961803-55961822 None:intergenic 25.0%
! AAAAAATAATATGGGCAAGT+TGG - chr1_2:55961802-55961821 Msa0078440:intron 25.0%
!! TGAAACTAAATTTTATGGGT+GGG - chr1_2:55961857-55961876 Msa0078440:intron 25.0%
! TACATGAACTTATCATTTAC+GGG + chr1_2:55961894-55961913 None:intergenic 25.0%
! GTTCATGTAATTAGTGAATT+TGG - chr1_2:55961905-55961924 Msa0078440:intron 25.0%
! CAAATAATACATGAAATTCG+GGG + chr1_2:55961984-55962003 None:intergenic 25.0%
! TACATTGTTATGACATCTTT+AGG + chr1_2:55962155-55962174 None:intergenic 25.0%
ATAAAAACCTACCTCCTATT+GGG + chr1_2:55960511-55960530 None:intergenic 30.0%
AATAAAAACCTACCTCCTAT+TGG + chr1_2:55960512-55960531 None:intergenic 30.0%
TCTTAGACGATGGATATAAT+TGG - chr1_2:55960699-55960718 Msa0078440:intron 30.0%
AGAAATATCACCTAGGATTA+GGG + chr1_2:55960757-55960776 None:intergenic 30.0%
AAGAAATATCACCTAGGATT+AGG + chr1_2:55960758-55960777 None:intergenic 30.0%
TTCCCCTATAGTATAATTCT+TGG - chr1_2:55960999-55961018 Msa0078440:intron 30.0%
ACACCCAAAACAATAATACA+TGG + chr1_2:55961144-55961163 None:intergenic 30.0%
CAACTTAATTATGAATGGGT+TGG - chr1_2:55961397-55961416 Msa0078440:intron 30.0%
! TTTGATTGTGACTTTGTTGT+TGG - chr1_2:55961674-55961693 Msa0078440:intron 30.0%
GGTCCAACCAAAAAATAATA+TGG - chr1_2:55961793-55961812 Msa0078440:intron 30.0%
!!! TGCCCATATTATTTTTTGGT+TGG + chr1_2:55961799-55961818 None:intergenic 30.0%
!! TGTTTAAGTTTTTGAACTCG+TGG + chr1_2:55961830-55961849 None:intergenic 30.0%
! CACCCATAAAATTTAGTTTC+AGG + chr1_2:55961858-55961877 None:intergenic 30.0%
! CTGAAACTAAATTTTATGGG+TGG - chr1_2:55961856-55961875 Msa0078440:intron 30.0%
ATAAAAACCTACCTCCTATT+GGG + chr1_2:55960511-55960530 None:intergenic 30.0%
AATAAAAACCTACCTCCTAT+TGG + chr1_2:55960512-55960531 None:intergenic 30.0%
TCTTAGACGATGGATATAAT+TGG - chr1_2:55960699-55960718 Msa0078440:intron 30.0%
AGAAATATCACCTAGGATTA+GGG + chr1_2:55960757-55960776 None:intergenic 30.0%
AAGAAATATCACCTAGGATT+AGG + chr1_2:55960758-55960777 None:intergenic 30.0%
TTCCCCTATAGTATAATTCT+TGG - chr1_2:55960999-55961018 Msa0078440:intron 30.0%
ACACCCAAAACAATAATACA+TGG + chr1_2:55961144-55961163 None:intergenic 30.0%
CAACTTAATTATGAATGGGT+TGG - chr1_2:55961397-55961416 Msa0078440:intron 30.0%
! TTTGATTGTGACTTTGTTGT+TGG - chr1_2:55961674-55961693 Msa0078440:intron 30.0%
GGTCCAACCAAAAAATAATA+TGG - chr1_2:55961793-55961812 Msa0078440:intron 30.0%
!!! TGCCCATATTATTTTTTGGT+TGG + chr1_2:55961799-55961818 None:intergenic 30.0%
!! TGTTTAAGTTTTTGAACTCG+TGG + chr1_2:55961830-55961849 None:intergenic 30.0%
! CACCCATAAAATTTAGTTTC+AGG + chr1_2:55961858-55961877 None:intergenic 30.0%
! CTGAAACTAAATTTTATGGG+TGG - chr1_2:55961856-55961875 Msa0078440:intron 30.0%
GAACTAGGTTGTGATGAAAT+TGG - chr1_2:55960472-55960491 Msa0078440:CDS 35.0%
TAAAAACCTACCTCCTATTG+GGG + chr1_2:55960510-55960529 None:intergenic 35.0%
!! ATGATATTTCTAGGCTCTCT+GGG + chr1_2:55960656-55960675 None:intergenic 35.0%
!! TATGATATTTCTAGGCTCTC+TGG + chr1_2:55960657-55960676 None:intergenic 35.0%
AAGGTGAAGAAATATCACCT+AGG + chr1_2:55960764-55960783 None:intergenic 35.0%
AGTATCACATGGTCAAGAAT+TGG - chr1_2:55961220-55961239 Msa0078440:intron 35.0%
TTCATCCAAGAATCGAAATC+AGG - chr1_2:55961243-55961262 Msa0078440:intron 35.0%
! CAACCCGTTTAACTTTCAAT+GGG - chr1_2:55961326-55961345 Msa0078440:intron 35.0%
!! GGGATTGATAGTGAAAATGT+GGG + chr1_2:55961368-55961387 None:intergenic 35.0%
!! TAATTATGAATGGGTTGGGT+TGG - chr1_2:55961402-55961421 Msa0078440:intron 35.0%
TAAATCAATACTGACGAGTC+AGG - chr1_2:55961772-55961791 Msa0078440:intron 35.0%
! CTAAATTTTATGGGTGGGAT+CGG - chr1_2:55961862-55961881 Msa0078440:intron 35.0%
! TAAATTTTATGGGTGGGATC+GGG - chr1_2:55961863-55961882 Msa0078440:intron 35.0%
AATACATGAAATTCGGGGAT+AGG + chr1_2:55961979-55961998 None:intergenic 35.0%
ATAGCTCCTAAACATGATAC+AGG + chr1_2:55962072-55962091 None:intergenic 35.0%
GATGTCATAACAATGTACGA+AGG - chr1_2:55962158-55962177 Msa0078440:intron 35.0%
GAACTAGGTTGTGATGAAAT+TGG - chr1_2:55960472-55960491 Msa0078440:CDS 35.0%
TAAAAACCTACCTCCTATTG+GGG + chr1_2:55960510-55960529 None:intergenic 35.0%
!! ATGATATTTCTAGGCTCTCT+GGG + chr1_2:55960656-55960675 None:intergenic 35.0%
!! TATGATATTTCTAGGCTCTC+TGG + chr1_2:55960657-55960676 None:intergenic 35.0%
AAGGTGAAGAAATATCACCT+AGG + chr1_2:55960764-55960783 None:intergenic 35.0%
AGTATCACATGGTCAAGAAT+TGG - chr1_2:55961220-55961239 Msa0078440:intron 35.0%
TTCATCCAAGAATCGAAATC+AGG - chr1_2:55961243-55961262 Msa0078440:intron 35.0%
! CAACCCGTTTAACTTTCAAT+GGG - chr1_2:55961326-55961345 Msa0078440:intron 35.0%
!! GGGATTGATAGTGAAAATGT+GGG + chr1_2:55961368-55961387 None:intergenic 35.0%
!! TAATTATGAATGGGTTGGGT+TGG - chr1_2:55961402-55961421 Msa0078440:intron 35.0%
TAAATCAATACTGACGAGTC+AGG - chr1_2:55961772-55961791 Msa0078440:intron 35.0%
! CTAAATTTTATGGGTGGGAT+CGG - chr1_2:55961862-55961881 Msa0078440:intron 35.0%
! TAAATTTTATGGGTGGGATC+GGG - chr1_2:55961863-55961882 Msa0078440:intron 35.0%
AATACATGAAATTCGGGGAT+AGG + chr1_2:55961979-55961998 None:intergenic 35.0%
ATAGCTCCTAAACATGATAC+AGG + chr1_2:55962072-55962091 None:intergenic 35.0%
GATGTCATAACAATGTACGA+AGG - chr1_2:55962158-55962177 Msa0078440:intron 35.0%
GATGAAATTGGAGTTGAACC+TGG - chr1_2:55960484-55960503 Msa0078440:CDS 40.0%
TTGCAGAAATACAGAGATCG+CGG - chr1_2:55960598-55960617 Msa0078440:CDS 40.0%
! GTCTAAGACATCAATCTCAC+TGG + chr1_2:55960687-55960706 None:intergenic 40.0%
GAGATTGATGTCTTAGACGA+TGG - chr1_2:55960689-55960708 Msa0078440:intron 40.0%
TGTTAACCCTCTAGATTCCA+AGG - chr1_2:55961161-55961180 Msa0078440:intron 40.0%
GTTAACCCTCTAGATTCCAA+GGG - chr1_2:55961162-55961181 Msa0078440:intron 40.0%
! TCACAGCCGACTCAAATTAT+CGG + chr1_2:55961196-55961215 None:intergenic 40.0%
ATAATTTGAGTCGGCTGTGA+GGG - chr1_2:55961196-55961215 Msa0078440:intron 40.0%
! CCGTGTACACTCTTATTTAG+GGG + chr1_2:55961271-55961290 None:intergenic 40.0%
! CCCCTAAATAAGAGTGTACA+CGG - chr1_2:55961268-55961287 Msa0078440:intron 40.0%
! CCCGTGTACACTCTTATTTA+GGG + chr1_2:55961272-55961291 None:intergenic 40.0%
! CCCTAAATAAGAGTGTACAC+GGG - chr1_2:55961269-55961288 Msa0078440:intron 40.0%
! ACCCGTGTACACTCTTATTT+AGG + chr1_2:55961273-55961292 None:intergenic 40.0%
! AAATAAGAGTGTACACGGGT+TGG - chr1_2:55961273-55961292 Msa0078440:intron 40.0%
! AATAAGAGTGTACACGGGTT+GGG - chr1_2:55961274-55961293 Msa0078440:intron 40.0%
!! AACGGGTTGCGTAATTAGTT+TGG + chr1_2:55961315-55961334 None:intergenic 40.0%
! GCAACCCGTTTAACTTTCAA+TGG - chr1_2:55961325-55961344 Msa0078440:intron 40.0%
CGACCCATTGAAAGTTAAAC+GGG + chr1_2:55961332-55961351 None:intergenic 40.0%
CCGACCCATTGAAAGTTAAA+CGG + chr1_2:55961333-55961352 None:intergenic 40.0%
! CCGTTTAACTTTCAATGGGT+CGG - chr1_2:55961330-55961349 Msa0078440:intron 40.0%
! CGTTTAACTTTCAATGGGTC+GGG - chr1_2:55961331-55961350 Msa0078440:intron 40.0%
!! CGGGATTGATAGTGAAAATG+TGG + chr1_2:55961369-55961388 None:intergenic 40.0%
!! TTTGGTTAGTTTGAGTCTCC+AGG - chr1_2:55961923-55961942 Msa0078440:intron 40.0%
TGCTTGCCTGTATCATGTTT+AGG - chr1_2:55962063-55962082 Msa0078440:CDS 40.0%
CACTTTCGAATGCTACAACT+CGG + chr1_2:55962110-55962129 None:intergenic 40.0%
AAAGTGTGTAGAGAGAGCTT+GGG - chr1_2:55962124-55962143 Msa0078440:intron 40.0%
AAACTAGGCTCCTCAACAAT+TGG + chr1_2:55962209-55962228 None:intergenic 40.0%
! ATTGTTGAGGAGCCTAGTTT+TGG - chr1_2:55962209-55962228 Msa0078440:CDS 40.0%
GATGAAATTGGAGTTGAACC+TGG - chr1_2:55960484-55960503 Msa0078440:CDS 40.0%
TTGCAGAAATACAGAGATCG+CGG - chr1_2:55960598-55960617 Msa0078440:CDS 40.0%
! GTCTAAGACATCAATCTCAC+TGG + chr1_2:55960687-55960706 None:intergenic 40.0%
GAGATTGATGTCTTAGACGA+TGG - chr1_2:55960689-55960708 Msa0078440:intron 40.0%
TGTTAACCCTCTAGATTCCA+AGG - chr1_2:55961161-55961180 Msa0078440:intron 40.0%
GTTAACCCTCTAGATTCCAA+GGG - chr1_2:55961162-55961181 Msa0078440:intron 40.0%
! TCACAGCCGACTCAAATTAT+CGG + chr1_2:55961196-55961215 None:intergenic 40.0%
ATAATTTGAGTCGGCTGTGA+GGG - chr1_2:55961196-55961215 Msa0078440:intron 40.0%
! CCGTGTACACTCTTATTTAG+GGG + chr1_2:55961271-55961290 None:intergenic 40.0%
! CCCCTAAATAAGAGTGTACA+CGG - chr1_2:55961268-55961287 Msa0078440:intron 40.0%
! CCCGTGTACACTCTTATTTA+GGG + chr1_2:55961272-55961291 None:intergenic 40.0%
! CCCTAAATAAGAGTGTACAC+GGG - chr1_2:55961269-55961288 Msa0078440:intron 40.0%
! ACCCGTGTACACTCTTATTT+AGG + chr1_2:55961273-55961292 None:intergenic 40.0%
! AAATAAGAGTGTACACGGGT+TGG - chr1_2:55961273-55961292 Msa0078440:intron 40.0%
! AATAAGAGTGTACACGGGTT+GGG - chr1_2:55961274-55961293 Msa0078440:intron 40.0%
!! AACGGGTTGCGTAATTAGTT+TGG + chr1_2:55961315-55961334 None:intergenic 40.0%
! GCAACCCGTTTAACTTTCAA+TGG - chr1_2:55961325-55961344 Msa0078440:intron 40.0%
CGACCCATTGAAAGTTAAAC+GGG + chr1_2:55961332-55961351 None:intergenic 40.0%
CCGACCCATTGAAAGTTAAA+CGG + chr1_2:55961333-55961352 None:intergenic 40.0%
! CCGTTTAACTTTCAATGGGT+CGG - chr1_2:55961330-55961349 Msa0078440:intron 40.0%
! CGTTTAACTTTCAATGGGTC+GGG - chr1_2:55961331-55961350 Msa0078440:intron 40.0%
!! CGGGATTGATAGTGAAAATG+TGG + chr1_2:55961369-55961388 None:intergenic 40.0%
!! TTTGGTTAGTTTGAGTCTCC+AGG - chr1_2:55961923-55961942 Msa0078440:intron 40.0%
TGCTTGCCTGTATCATGTTT+AGG - chr1_2:55962063-55962082 Msa0078440:CDS 40.0%
CACTTTCGAATGCTACAACT+CGG + chr1_2:55962110-55962129 None:intergenic 40.0%
AAAGTGTGTAGAGAGAGCTT+GGG - chr1_2:55962124-55962143 Msa0078440:intron 40.0%
AAACTAGGCTCCTCAACAAT+TGG + chr1_2:55962209-55962228 None:intergenic 40.0%
! ATTGTTGAGGAGCCTAGTTT+TGG - chr1_2:55962209-55962228 Msa0078440:CDS 40.0%
AGAAAATACGGGCAACGAGT+TGG - chr1_2:55960722-55960741 Msa0078440:intron 45.0%
GCAAAGGAAACCCTAATCCT+AGG - chr1_2:55960744-55960763 Msa0078440:intron 45.0%
! ACAGGTCTCGTAAGTTGACA+AGG - chr1_2:55960961-55960980 Msa0078440:intron 45.0%
! CAGGTCTCGTAAGTTGACAA+GGG - chr1_2:55960962-55960981 Msa0078440:intron 45.0%
! AGGTCTCGTAAGTTGACAAG+GGG - chr1_2:55960963-55960982 Msa0078440:intron 45.0%
! CACAGCCGACTCAAATTATC+GGG + chr1_2:55961195-55961214 None:intergenic 45.0%
GATAATTTGAGTCGGCTGTG+AGG - chr1_2:55961195-55961214 Msa0078440:intron 45.0%
GGGAACCTGATTTCGATTCT+TGG + chr1_2:55961251-55961270 None:intergenic 45.0%
!! TTATGAATGGGTTGGGTTGG+TGG - chr1_2:55961405-55961424 Msa0078440:intron 45.0%
!! ATAGGAGTGTTCATGGGTGT+GGG + chr1_2:55961961-55961980 None:intergenic 45.0%
! GAAAGTGTGTAGAGAGAGCT+TGG - chr1_2:55962123-55962142 Msa0078440:intron 45.0%
!!! GAGGAGCCTAGTTTTGGTAA+TGG - chr1_2:55962215-55962234 Msa0078440:CDS 45.0%
!!! GAGCCTAGTTTTGGTAATGG+TGG - chr1_2:55962218-55962237 Msa0078440:CDS 45.0%
TCGCCACCATTACCAAAACT+AGG + chr1_2:55962224-55962243 None:intergenic 45.0%
AGAAAATACGGGCAACGAGT+TGG - chr1_2:55960722-55960741 Msa0078440:intron 45.0%
GCAAAGGAAACCCTAATCCT+AGG - chr1_2:55960744-55960763 Msa0078440:intron 45.0%
! ACAGGTCTCGTAAGTTGACA+AGG - chr1_2:55960961-55960980 Msa0078440:intron 45.0%
! CAGGTCTCGTAAGTTGACAA+GGG - chr1_2:55960962-55960981 Msa0078440:intron 45.0%
! AGGTCTCGTAAGTTGACAAG+GGG - chr1_2:55960963-55960982 Msa0078440:intron 45.0%
! CACAGCCGACTCAAATTATC+GGG + chr1_2:55961195-55961214 None:intergenic 45.0%
GATAATTTGAGTCGGCTGTG+AGG - chr1_2:55961195-55961214 Msa0078440:intron 45.0%
GGGAACCTGATTTCGATTCT+TGG + chr1_2:55961251-55961270 None:intergenic 45.0%
!! TTATGAATGGGTTGGGTTGG+TGG - chr1_2:55961405-55961424 Msa0078440:intron 45.0%
!! ATAGGAGTGTTCATGGGTGT+GGG + chr1_2:55961961-55961980 None:intergenic 45.0%
! GAAAGTGTGTAGAGAGAGCT+TGG - chr1_2:55962123-55962142 Msa0078440:intron 45.0%
!!! GAGGAGCCTAGTTTTGGTAA+TGG - chr1_2:55962215-55962234 Msa0078440:CDS 45.0%
!!! GAGCCTAGTTTTGGTAATGG+TGG - chr1_2:55962218-55962237 Msa0078440:CDS 45.0%
TCGCCACCATTACCAAAACT+AGG + chr1_2:55962224-55962243 None:intergenic 45.0%
!! CCTAGTTCTGCATTGTCGCT+TGG + chr1_2:55960460-55960479 None:intergenic 50.0%
CCAAGCGACAATGCAGAACT+AGG - chr1_2:55960457-55960476 Msa0078440:CDS 50.0%
! GGTCTCGTAAGTTGACAAGG+GGG - chr1_2:55960964-55960983 Msa0078440:intron 50.0%
! TAAGTTGACAAGGGGGTGCA+GGG - chr1_2:55960971-55960990 Msa0078440:intron 50.0%
ACCCTCTAGATTCCAAGGGT+AGG - chr1_2:55961166-55961185 Msa0078440:intron 50.0%
CCCTACCCTTGGAATCTAGA+GGG + chr1_2:55961170-55961189 None:intergenic 50.0%
CCCTCTAGATTCCAAGGGTA+GGG - chr1_2:55961167-55961186 Msa0078440:intron 50.0%
CCTCTAGATTCCAAGGGTAG+GGG - chr1_2:55961168-55961187 Msa0078440:intron 50.0%
GGGGACCCGATAATTTGAGT+CGG - chr1_2:55961187-55961206 Msa0078440:intron 50.0%
!! GCTGTGAGGGAAGTATCACA+TGG - chr1_2:55961209-55961228 Msa0078440:intron 50.0%
AGTTTGAGTCTCCAGGTCTG+TGG - chr1_2:55961930-55961949 Msa0078440:intron 50.0%
GTTTGAGTCTCCAGGTCTGT+GGG - chr1_2:55961931-55961950 Msa0078440:intron 50.0%
!! GATAGGAGTGTTCATGGGTG+TGG + chr1_2:55961962-55961981 None:intergenic 50.0%
!! TCGGGGATAGGAGTGTTCAT+GGG + chr1_2:55961967-55961986 None:intergenic 50.0%
!! TTCGGGGATAGGAGTGTTCA+TGG + chr1_2:55961968-55961987 None:intergenic 50.0%
CGTGCCAACACCAATTGTTG+AGG - chr1_2:55962196-55962215 Msa0078440:CDS 50.0%
GGCTCCTCAACAATTGGTGT+TGG + chr1_2:55962203-55962222 None:intergenic 50.0%
!! CCTAGTTCTGCATTGTCGCT+TGG + chr1_2:55960460-55960479 None:intergenic 50.0%
CCAAGCGACAATGCAGAACT+AGG - chr1_2:55960457-55960476 Msa0078440:CDS 50.0%
! GGTCTCGTAAGTTGACAAGG+GGG - chr1_2:55960964-55960983 Msa0078440:intron 50.0%
! TAAGTTGACAAGGGGGTGCA+GGG - chr1_2:55960971-55960990 Msa0078440:intron 50.0%
ACCCTCTAGATTCCAAGGGT+AGG - chr1_2:55961166-55961185 Msa0078440:intron 50.0%
CCCTACCCTTGGAATCTAGA+GGG + chr1_2:55961170-55961189 None:intergenic 50.0%
CCCTCTAGATTCCAAGGGTA+GGG - chr1_2:55961167-55961186 Msa0078440:intron 50.0%
CCTCTAGATTCCAAGGGTAG+GGG - chr1_2:55961168-55961187 Msa0078440:intron 50.0%
GGGGACCCGATAATTTGAGT+CGG - chr1_2:55961187-55961206 Msa0078440:intron 50.0%
!! GCTGTGAGGGAAGTATCACA+TGG - chr1_2:55961209-55961228 Msa0078440:intron 50.0%
AGTTTGAGTCTCCAGGTCTG+TGG - chr1_2:55961930-55961949 Msa0078440:intron 50.0%
GTTTGAGTCTCCAGGTCTGT+GGG - chr1_2:55961931-55961950 Msa0078440:intron 50.0%
!! GATAGGAGTGTTCATGGGTG+TGG + chr1_2:55961962-55961981 None:intergenic 50.0%
!! TCGGGGATAGGAGTGTTCAT+GGG + chr1_2:55961967-55961986 None:intergenic 50.0%
!! TTCGGGGATAGGAGTGTTCA+TGG + chr1_2:55961968-55961987 None:intergenic 50.0%
CGTGCCAACACCAATTGTTG+AGG - chr1_2:55962196-55962215 Msa0078440:CDS 50.0%
GGCTCCTCAACAATTGGTGT+TGG + chr1_2:55962203-55962222 None:intergenic 50.0%
GAGTTGAACCTGGCCCCAAT+AGG - chr1_2:55960494-55960513 Msa0078440:CDS 55.0%
TTGAACCTGGCCCCAATAGG+AGG - chr1_2:55960497-55960516 Msa0078440:CDS 55.0%
! TACGGGCAACGAGTTGGCAA+AGG - chr1_2:55960728-55960747 Msa0078440:intron 55.0%
! GTAAGTTGACAAGGGGGTGC+AGG - chr1_2:55960970-55960989 Msa0078440:intron 55.0%
! AAGTTGACAAGGGGGTGCAG+GGG - chr1_2:55960972-55960991 Msa0078440:intron 55.0%
CCCCTACCCTTGGAATCTAG+AGG + chr1_2:55961171-55961190 None:intergenic 55.0%
ATTATCGGGTCCCCTACCCT+TGG + chr1_2:55961181-55961200 None:intergenic 55.0%
!! AGAGTGTACACGGGTTGGGT+TGG - chr1_2:55961278-55961297 Msa0078440:intron 55.0%
!! GTACACGGGTTGGGTTGGAT+CGG - chr1_2:55961283-55961302 Msa0078440:intron 55.0%
GTGTGTAGAGAGAGCTTGGG+CGG - chr1_2:55962127-55962146 Msa0078440:intron 55.0%
GAGTTGAACCTGGCCCCAAT+AGG - chr1_2:55960494-55960513 Msa0078440:CDS 55.0%
TTGAACCTGGCCCCAATAGG+AGG - chr1_2:55960497-55960516 Msa0078440:CDS 55.0%
! TACGGGCAACGAGTTGGCAA+AGG - chr1_2:55960728-55960747 Msa0078440:intron 55.0%
! GTAAGTTGACAAGGGGGTGC+AGG - chr1_2:55960970-55960989 Msa0078440:intron 55.0%
! AAGTTGACAAGGGGGTGCAG+GGG - chr1_2:55960972-55960991 Msa0078440:intron 55.0%
CCCCTACCCTTGGAATCTAG+AGG + chr1_2:55961171-55961190 None:intergenic 55.0%
ATTATCGGGTCCCCTACCCT+TGG + chr1_2:55961181-55961200 None:intergenic 55.0%
!! AGAGTGTACACGGGTTGGGT+TGG - chr1_2:55961278-55961297 Msa0078440:intron 55.0%
!! GTACACGGGTTGGGTTGGAT+CGG - chr1_2:55961283-55961302 Msa0078440:intron 55.0%
GTGTGTAGAGAGAGCTTGGG+CGG - chr1_2:55962127-55962146 Msa0078440:intron 55.0%
ACCTGGCCCCAATAGGAGGT+AGG - chr1_2:55960501-55960520 Msa0078440:CDS 60.0%
ACCTACCTCCTATTGGGGCC+AGG + chr1_2:55960505-55960524 None:intergenic 60.0%
! AGTTGACAAGGGGGTGCAGG+GGG - chr1_2:55960973-55960992 Msa0078440:intron 60.0%
ACCTGGCCCCAATAGGAGGT+AGG - chr1_2:55960501-55960520 Msa0078440:CDS 60.0%
ACCTACCTCCTATTGGGGCC+AGG + chr1_2:55960505-55960524 None:intergenic 60.0%
! AGTTGACAAGGGGGTGCAGG+GGG - chr1_2:55960973-55960992 Msa0078440:intron 60.0%
TGTGGGTCGACCCACAGACC+TGG + chr1_2:55961944-55961963 None:intergenic 65.0%
TGTGGGTCGACCCACAGACC+TGG + chr1_2:55961944-55961963 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 55960451 55962253 55960451 ID=Msa0078440;Name=Msa0078440
chr1_2 mRNA 55960451 55962253 55960451 ID=Msa0078440-mRNA-1;Parent=Msa0078440;Name=Msa0078440-mRNA-1;_AED=0.40;_eAED=0.40;_QI=0|0|0|0.66|1|1|3|0|132
chr1_2 exon 55962186 55962253 55962186 ID=Msa0078440-mRNA-1:exon:17461;Parent=Msa0078440-mRNA-1
chr1_2 exon 55961939 55962100 55961939 ID=Msa0078440-mRNA-1:exon:17460;Parent=Msa0078440-mRNA-1
chr1_2 exon 55960451 55960619 55960451 ID=Msa0078440-mRNA-1:exon:17459;Parent=Msa0078440-mRNA-1
chr1_2 CDS 55962186 55962253 55962186 ID=Msa0078440-mRNA-1:cds;Parent=Msa0078440-mRNA-1
chr1_2 CDS 55961939 55962100 55961939 ID=Msa0078440-mRNA-1:cds;Parent=Msa0078440-mRNA-1
chr1_2 CDS 55960451 55960619 55960451 ID=Msa0078440-mRNA-1:cds;Parent=Msa0078440-mRNA-1
Gene Sequence

>Msa0078440

ATGGAACCAAGCGACAATGCAGAACTAGGTTGTGATGAAATTGGAGTTGAACCTGGCCCCAATAGGAGAAATACAGAGATCGCGGTCTTAAATCAAATAGCTTCTTCATATAGGGCTCCCAGAGAGCCTAGAAATATCATAATAACAACCAGTGAGATTGATGTCTTAGACGATGGATATAATTGGAGAAAATACGGGCAACGAGTTGGCAAAGGAAACCCTAATCCTAGGAGCTATTACAAATGTACGACACCGAGTTGTAGCATTCGAAAGTGTGTAGAGAGAGCTTGGGCGGATCCTAAAGATGTCATAACAATGTACGAAGGAAGACATAATCATAACGTGCCAACACCAATTGTTGAGGAGCCTAGTTTTGGTAATGGTGGCGACAATATTTAA
Protein sequence

>Msa0078440

MEPSDNAELGCDEIGVEPGPNRRNTEIAVLNQIASSYRAPREPRNIIITTSEIDVLDDGYNWRKYGQRVGKGNPNPRSYYKCTTPSCSIRKCVERAWADPKDVITMYEGRHNHNVPTPIVEEPSFGNGGDNI*