AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0078670

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0078670 MtrunA17_Chr1g0189391 80.609 361 30 3 146 493 1 334 0.0 550
Msa0078670 MtrunA17_Chr6g0485431 47.202 411 165 8 85 493 1 361 5.47e-111 333
Msa0078670 MtrunA17_Chr7g0218081 51.852 81 38 1 219 299 387 466 4.46e-22 99.4
Msa0078670 MtrunA17_Chr7g0218081 43.023 86 43 3 242 327 228 307 1.28e-11 67.0
Msa0078670 MtrunA17_Chr7g0243891 35.106 188 103 7 162 335 280 462 5.05e-22 99.4
Msa0078670 MtrunA17_Chr7g0249311 49.474 95 44 3 206 299 357 448 1.05e-21 98.6
Msa0078670 MtrunA17_Chr3g0079691 38.608 158 81 5 181 330 439 588 6.31e-21 96.3
Msa0078670 MtrunA17_Chr5g0445311 37.956 137 81 2 163 299 288 420 8.56e-21 95.5
Msa0078670 MtrunA17_Chr4g0042831 46.875 96 49 2 205 299 240 334 9.28e-21 94.0
Msa0078670 MtrunA17_Chr5g0418191 53.947 76 34 1 224 299 302 376 1.66e-20 94.0
Msa0078670 MtrunA17_Chr4g0004911 45.714 105 55 2 195 299 290 392 1.69e-20 94.4
Msa0078670 MtrunA17_Chr1g0150801 50.667 75 36 1 225 299 85 158 4.15e-20 87.4
Msa0078670 MtrunA17_Chr7g0249301 54.930 71 31 1 229 299 279 348 5.50e-20 91.7
Msa0078670 MtrunA17_Chr3g0129361 52.000 75 35 1 227 301 129 202 7.47e-20 88.2
Msa0078670 MtrunA17_Chr5g0432161 52.500 80 37 1 220 299 399 477 8.66e-20 92.4
Msa0078670 MtrunA17_Chr8g0383251 51.389 72 34 1 228 299 94 164 1.09e-19 86.7
Msa0078670 MtrunA17_Chr8g0383351 54.412 68 30 1 234 301 152 218 1.53e-19 87.8
Msa0078670 MtrunA17_Chr3g0101131 53.425 73 33 1 227 299 400 471 1.84e-19 91.7
Msa0078670 MtrunA17_Chr3g0106491 54.795 73 32 1 227 299 350 421 2.03e-19 91.3
Msa0078670 MtrunA17_Chr3g0106491 43.333 90 42 4 242 330 198 279 3.35e-11 65.5
Msa0078670 MtrunA17_Chr7g0270191 41.905 105 48 3 227 330 130 222 2.22e-19 88.6
Msa0078670 MtrunA17_Chr4g0051881 43.810 105 51 4 229 333 165 261 5.44e-18 85.1
Msa0078670 MtrunA17_Chr3g0129321 48.000 75 38 1 225 299 101 174 7.36e-18 82.0
Msa0078670 MtrunA17_Chr8g0335811 48.718 78 39 1 227 304 139 215 8.02e-18 82.4
Msa0078670 MtrunA17_Chr7g0263531 51.351 74 35 1 226 299 345 417 1.21e-17 85.1
Msa0078670 MtrunA17_Chr4g0068541 48.684 76 37 2 229 303 195 269 2.86e-17 84.0
Msa0078670 MtrunA17_Chr1g0194481 49.315 73 36 1 227 299 143 214 4.46e-17 82.4
Msa0078670 MtrunA17_Chr5g0447701 45.333 75 40 1 227 301 237 310 6.11e-17 82.8
Msa0078670 MtrunA17_Chr2g0294231 49.315 73 36 1 227 299 188 259 2.11e-16 80.9
Msa0078670 MtrunA17_Chr7g0224801 52.857 70 28 2 232 299 83 149 2.25e-16 77.0
Msa0078670 MtrunA17_Chr1g0188941 50.725 69 33 1 231 299 40 107 3.81e-16 74.7
Msa0078670 MtrunA17_Chr7g0248721 47.887 71 35 1 229 299 128 196 5.07e-16 77.0
Msa0078670 MtrunA17_Chr7g0238921 46.154 78 40 2 223 299 104 180 3.21e-15 76.6
Msa0078670 MtrunA17_Chr8g0386241 44.595 74 40 1 226 299 87 159 4.19e-15 73.6
Msa0078670 MtrunA17_Chr5g0418781 45.946 74 39 1 229 302 111 183 4.44e-15 75.5
Msa0078670 MtrunA17_Chr5g0443131 46.479 71 37 1 229 299 144 213 4.64e-15 75.9
Msa0078670 MtrunA17_Chr4g0074001 38.462 104 62 2 205 307 321 423 2.85e-14 75.1
Msa0078670 MtrunA17_Chr7g0270831 38.235 102 57 3 203 299 173 273 6.11e-14 73.9
Msa0078670 MtrunA17_Chr2g0322391 40.909 88 42 3 222 300 321 407 7.28e-14 73.9
Msa0078670 MtrunA17_Chr8g0348311 39.216 102 45 4 199 299 127 212 2.93e-13 70.9
Msa0078670 MtrunA17_Chr3g0139021 40.594 101 47 4 200 299 283 371 4.05e-13 70.9
Msa0078670 MtrunA17_Chr7g0228941 49.254 67 32 2 239 304 49 114 4.37e-13 66.2
Msa0078670 MtrunA17_Chr4g0075201 43.056 72 39 2 229 299 254 324 6.06e-13 70.9
Msa0078670 MtrunA17_Chr2g0288871 43.056 72 39 2 229 299 292 362 8.28e-13 70.5
Msa0078670 MtrunA17_Chr1g0147881 53.226 62 27 2 239 299 259 319 8.62e-13 69.7
Msa0078670 MtrunA17_Chr2g0302391 27.604 192 127 6 118 299 79 268 9.22e-13 70.1
Msa0078670 MtrunA17_Chr3g0099641 42.466 73 40 2 229 300 238 309 9.22e-13 70.1
Msa0078670 MtrunA17_Chr2g0284321 54.237 59 25 2 243 300 36 93 2.45e-12 66.2
Msa0078670 MtrunA17_Chr4g0025061 44.444 72 38 2 229 299 347 417 2.94e-12 68.9
Msa0078670 MtrunA17_Chr8g0387501 42.424 99 45 4 241 338 128 215 7.31e-12 65.9
Msa0078670 MtrunA17_Chr2g0333851 35.135 111 58 5 229 336 154 253 1.07e-11 65.9
Msa0078670 MtrunA17_Chr7g0270051 51.724 58 26 2 243 299 54 110 1.09e-11 65.5
Msa0078670 MtrunA17_Chr1g0150281 40.000 75 41 3 229 300 125 198 1.14e-11 65.5
Msa0078670 MtrunA17_Chr5g0401821 47.368 76 34 3 229 299 182 256 1.32e-11 65.1
Msa0078670 MtrunA17_Chr1g0184691 49.231 65 31 2 239 302 290 353 1.40e-11 65.9
Msa0078670 MtrunA17_Chr4g0071521 46.970 66 33 2 239 303 242 306 1.76e-11 65.5
Msa0078670 MtrunA17_Chr4g0060271 41.096 73 41 2 229 300 242 313 1.77e-11 66.6
Msa0078670 MtrunA17_Chr7g0216891 43.056 72 39 2 229 299 206 276 3.27e-11 65.9
Msa0078670 MtrunA17_Chr4g0053281 49.206 63 30 2 239 300 263 324 4.22e-11 64.3
Msa0078670 MtrunA17_Chr2g0293481 45.455 66 34 2 235 299 260 324 4.65e-11 65.1
Msa0078670 MtrunA17_Chr4g0025051 41.558 77 43 2 224 299 317 392 4.90e-11 65.1
Msa0078670 MtrunA17_Chr7g0248691 41.304 92 44 5 238 328 150 232 5.78e-11 63.9
Msa0078670 MtrunA17_Chr1g0202461 38.532 109 57 5 229 336 249 348 6.59e-11 63.9
Msa0078670 MtrunA17_Chr2g0319961 53.448 58 25 2 243 299 81 137 8.16e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0078670 AT5G64810.1 38.835 103 62 1 197 299 65 166 2.94e-21 92.0
Msa0078670 AT1G64000.1 55.556 72 31 1 228 299 100 170 4.86e-21 91.3
Msa0078670 AT2G38470.1 35.000 180 100 5 172 339 293 467 6.83e-21 96.3
Msa0078670 AT4G26640.7 42.609 115 54 2 196 299 284 397 8.12e-21 95.9
Msa0078670 AT4G26640.1 42.609 115 54 2 196 299 252 365 1.15e-20 95.1
Msa0078670 AT4G26640.2 42.609 115 54 2 196 299 324 437 1.23e-20 95.5
Msa0078670 AT4G26640.5 42.609 115 54 2 196 299 148 261 1.64e-20 93.6
Msa0078670 AT4G26640.6 42.609 115 54 2 196 299 148 261 1.64e-20 93.6
Msa0078670 AT4G26640.4 42.609 115 54 2 196 299 148 261 1.64e-20 93.6
Msa0078670 AT4G26640.3 42.609 115 54 2 196 299 148 261 1.64e-20 93.6
Msa0078670 AT5G07100.1 52.381 84 32 2 227 303 219 301 1.82e-20 92.4
Msa0078670 AT1G13960.1 53.947 76 34 1 224 299 391 465 2.25e-20 94.4
Msa0078670 AT5G07100.2 52.381 84 32 2 227 303 126 208 2.47e-20 90.1
Msa0078670 AT5G07100.4 52.381 84 32 2 227 303 126 208 2.47e-20 90.1
Msa0078670 AT5G07100.5 52.381 84 32 2 227 303 126 208 2.47e-20 90.1
Msa0078670 AT5G07100.3 52.381 84 32 2 227 303 126 208 2.47e-20 90.1
Msa0078670 AT5G41570.1 54.930 71 31 1 229 299 85 154 2.52e-20 89.0
Msa0078670 AT2G03340.1 53.947 76 34 1 224 299 397 471 2.71e-20 94.4
Msa0078670 AT3G01080.2 53.947 76 34 1 224 299 326 400 3.79e-20 93.6
Msa0078670 AT1G13960.2 53.947 76 34 1 224 299 238 312 6.17e-20 91.7
Msa0078670 AT3G01080.1 53.947 76 34 1 224 299 288 362 7.01e-20 92.4
Msa0078670 AT4G26440.1 57.534 73 30 1 227 299 357 428 2.68e-19 91.3
Msa0078670 AT5G56270.1 54.795 73 32 1 227 299 472 543 2.96e-19 91.7
Msa0078670 AT2G04880.2 38.017 121 74 1 179 299 220 339 1.56e-18 88.6
Msa0078670 AT1G55600.1 52.632 76 35 1 224 299 289 363 1.92e-18 88.6
Msa0078670 AT2G04880.1 38.017 121 74 1 179 299 244 363 2.47e-18 88.2
Msa0078670 AT2G44745.1 46.429 84 44 1 227 310 130 212 6.32e-18 83.2
Msa0078670 AT2G30250.1 52.055 73 34 1 227 299 313 384 6.51e-18 85.9
Msa0078670 AT5G49520.1 52.055 73 34 1 227 299 206 277 7.54e-18 85.9
Msa0078670 AT2G47260.1 49.315 73 36 1 227 299 159 230 1.07e-17 84.7
Msa0078670 AT4G39410.1 49.333 75 37 1 227 301 208 281 1.69e-17 83.6
Msa0078670 AT5G26170.1 43.243 74 41 1 229 302 100 172 1.81e-17 80.5
Msa0078670 AT2G46130.1 52.113 71 33 1 229 299 17 86 2.03e-17 78.6
Msa0078670 AT1G29860.1 49.315 73 36 1 227 299 121 192 2.39e-17 82.8
Msa0078670 AT4G18170.1 47.945 73 37 1 227 299 157 228 1.73e-16 80.9
Msa0078670 AT1G69310.4 45.946 74 39 1 229 302 134 206 5.48e-16 79.0
Msa0078670 AT1G69310.2 45.946 74 39 1 229 302 134 206 5.48e-16 79.0
Msa0078670 AT1G69310.1 45.946 74 39 1 229 302 134 206 5.48e-16 79.0
Msa0078670 AT3G62340.1 52.113 71 33 1 229 299 105 174 5.76e-16 78.6
Msa0078670 AT5G13080.1 48.611 72 36 1 228 299 53 123 1.66e-15 73.9
Msa0078670 AT5G46350.1 45.070 71 38 1 229 299 170 239 2.10e-15 77.8
Msa0078670 AT3G01970.1 48.052 77 37 2 229 305 52 125 2.83e-15 73.6
Msa0078670 AT2G21900.1 51.562 64 29 2 237 299 103 165 3.07e-15 74.7
Msa0078670 AT4G31550.2 37.903 124 58 5 197 319 211 316 4.46e-15 76.6
Msa0078670 AT2G46130.2 47.887 71 32 1 229 299 17 82 8.48e-15 70.9
Msa0078670 AT1G69310.3 41.892 74 38 1 229 302 134 202 8.63e-14 72.4
Msa0078670 AT4G30935.1 39.252 107 55 3 205 307 295 395 9.32e-14 73.9
Msa0078670 AT4G31550.1 37.600 125 58 6 197 319 211 317 1.51e-13 72.0
Msa0078670 AT2G37260.1 49.206 63 31 1 237 299 344 405 3.00e-13 72.0
Msa0078670 AT2G37260.3 49.206 63 31 1 237 299 264 325 3.11e-13 71.2
Msa0078670 AT2G37260.2 49.206 63 31 1 237 299 262 323 3.23e-13 71.2
Msa0078670 AT4G01250.1 48.000 75 36 3 226 299 113 185 4.74e-13 70.1
Msa0078670 AT5G52830.1 38.532 109 59 3 227 334 150 251 6.67e-13 70.5
Msa0078670 AT4G23550.1 43.243 74 40 2 227 299 125 197 8.30e-13 69.7
Msa0078670 AT4G04450.2 44.444 72 38 2 229 299 185 255 9.74e-13 70.5
Msa0078670 AT1G29280.1 43.011 93 48 3 208 299 43 131 1.63e-12 68.2
Msa0078670 AT2G25000.2 34.862 109 55 5 208 301 56 163 2.27e-12 67.0
Msa0078670 AT2G25000.4 34.862 109 55 5 208 301 56 163 2.27e-12 67.0
Msa0078670 AT4G24240.1 44.444 81 39 3 229 304 264 343 2.48e-12 68.6
Msa0078670 AT4G04450.1 44.444 72 38 2 229 299 279 349 2.68e-12 69.3
Msa0078670 AT2G23320.1 43.750 80 39 3 226 300 220 298 2.80e-12 68.2
Msa0078670 AT2G25000.3 34.862 109 55 5 208 301 78 185 3.69e-12 67.0
Msa0078670 AT2G46400.1 45.205 73 36 2 229 298 91 162 4.12e-12 67.4
Msa0078670 AT4G22070.4 43.056 72 39 2 229 299 284 354 4.20e-12 68.9
Msa0078670 AT4G22070.3 43.056 72 39 2 229 299 284 354 4.20e-12 68.9
Msa0078670 AT4G22070.2 43.056 72 39 2 229 299 284 354 4.20e-12 68.9
Msa0078670 AT4G22070.1 43.056 72 39 2 229 299 284 354 4.20e-12 68.9
Msa0078670 AT5G15130.2 43.056 72 39 2 229 299 172 242 5.73e-12 68.2
Msa0078670 AT2G25000.1 34.862 109 55 5 208 301 99 206 6.04e-12 66.6
Msa0078670 AT5G15130.1 43.056 72 39 2 229 299 214 284 6.87e-12 68.2
Msa0078670 AT1G62300.1 43.056 72 39 2 229 299 299 369 7.30e-12 68.2
Msa0078670 AT4G01720.1 44.444 72 38 2 229 299 226 296 9.71e-12 67.4
Msa0078670 AT5G43290.1 43.056 72 39 2 229 299 100 170 1.48e-11 65.5
Msa0078670 AT2G24570.1 40.000 105 49 5 197 299 208 300 1.54e-11 65.9
Msa0078670 AT2G34830.1 47.692 65 32 2 236 299 209 272 3.02e-11 65.9
Msa0078670 AT2G34830.2 47.692 65 32 2 236 299 218 281 3.64e-11 65.5
Msa0078670 AT4G31800.2 46.032 63 31 3 241 301 110 171 7.39e-11 62.8
Msa0078670 AT1G30650.1 47.692 65 32 2 236 299 211 274 7.79e-11 64.7
Msa0078670 AT5G28650.1 43.478 69 37 2 239 306 259 326 8.09e-11 63.9
Msa0078670 AT4G31800.1 46.032 63 31 3 241 301 175 236 9.72e-11 63.5

Find 123 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTCAAGTCTTTCCTTTCA+TGG 0.213204 1_2:+56343911 Msa0078670:CDS
GTTGTTGTTATTGGTGTTAT+TGG 0.219826 1_2:-56340701 None:intergenic
TGAAAGTGATGAAGACATTT+TGG 0.222211 1_2:+56342513 Msa0078670:CDS
ATCAGTTGTACTATCTTCTT+TGG 0.230642 1_2:-56342155 None:intergenic
CAAGTTGGACCTAATATTAA+TGG 0.252073 1_2:+56343783 Msa0078670:CDS
AATAATTACCTACGATTGTT+AGG 0.259815 1_2:-56342586 None:intergenic
GGAATTGGCCCGTTGATATT+TGG 0.273233 1_2:-56343705 None:intergenic
AATGAATCTCCTCCTTCTTC+TGG 0.277307 1_2:+56340811 Msa0078670:CDS
GAAATTGACCCATTAATATT+AGG 0.309554 1_2:-56343792 None:intergenic
TATGTAACAAGTACATATTT+TGG 0.310515 1_2:-56343357 None:intergenic
CCAACTTGAGTTGTGGTAAT+AGG 0.312353 1_2:-56343768 None:intergenic
TTTCTTCAGGTTGGTGGAAA+TGG 0.328210 1_2:+56343879 Msa0078670:CDS
AAAGGCCGCGTCATGGTATT+AGG 0.337576 1_2:-56343576 None:intergenic
TTACCCACCATGTTTAATAA+AGG 0.347175 1_2:-56343594 None:intergenic
GGGTGCTTCCCCAGCTGATC+AGG 0.355314 1_2:+56343932 Msa0078670:CDS
GTCCTTGATCAGGTGGTGTT+GGG 0.367401 1_2:-56342012 None:intergenic
AACTCCTATTGATACAAATC+AGG 0.367991 1_2:+56343677 Msa0078670:CDS
ATACCTTATGGTATGAATTA+CGG 0.368502 1_2:+56343549 Msa0078670:CDS
CAATATGGCTATATACCTTA+TGG 0.368992 1_2:+56343537 Msa0078670:CDS
CATAAGGTATATAGCCATAT+TGG 0.374743 1_2:-56343536 None:intergenic
GCTCAAGTCTTTCCTTTCAT+GGG 0.380582 1_2:+56343912 Msa0078670:CDS
TCGAGAAATATTAATGCATC+TGG 0.384031 1_2:+56343432 Msa0078670:CDS
GTTATTGGTGTTATTGGTGT+TGG 0.386478 1_2:-56340695 None:intergenic
GGAAATACAGGAAGCGGAAT+TGG 0.386630 1_2:-56343720 None:intergenic
CCTAAATATCATTCGGTGTC+AGG 0.391994 1_2:-56343969 None:intergenic
TGCAATTCAGGAAGAGAAAG+AGG 0.396225 1_2:+56342422 Msa0078670:intron
CCATTTCACATTGTACCATA+TGG 0.401565 1_2:+56343849 Msa0078670:CDS
TATGTACTTGTTACATATGA+TGG 0.402941 1_2:+56343363 Msa0078670:CDS
TGTTCACTTATGGGTCTGTA+AGG 0.409849 1_2:-56343630 None:intergenic
TCTGCACCATGTCCTTGATC+AGG 0.410286 1_2:-56342022 None:intergenic
GGTGGTAATAGTGGTGATAT+CGG 0.419782 1_2:-56343828 None:intergenic
AAACGATTATAAAACCTTTG+TGG 0.423869 1_2:-56342301 None:intergenic
CCAACCTGATTTGTATCAAT+AGG 0.427285 1_2:-56343681 None:intergenic
GGTGGTAATGGTGGTGATAT+CGG 0.428089 1_2:-56343741 None:intergenic
TCCGTAGCTTCCTGATCAGC+TGG 0.428219 1_2:-56343942 None:intergenic
TATAGCCATATTGGTGAAAA+GGG 0.437091 1_2:-56343527 None:intergenic
ATATAGCCATATTGGTGAAA+AGG 0.444538 1_2:-56343528 None:intergenic
CATCTCCTCTTGTTGCCACA+TGG 0.452151 1_2:-56341937 None:intergenic
AAGTTGGACCTAATATTAAT+GGG 0.454569 1_2:+56343784 Msa0078670:CDS
GGTGGTGATATCGGAAATAC+AGG 0.454748 1_2:-56343732 None:intergenic
CACACATATGTCTAATATCA+TGG 0.457002 1_2:+56340660 None:intergenic
AGTGGTGATATCGGAAATAC+AGG 0.457187 1_2:-56343819 None:intergenic
ACTGCTTCAGAAAAGTTCAT+TGG 0.480463 1_2:-56342127 None:intergenic
CAACCGTAATTCATACCATA+AGG 0.481218 1_2:-56343552 None:intergenic
TGTCCTTGATCAGGTGGTGT+TGG 0.482577 1_2:-56342013 None:intergenic
GTAATAGGAAATGGTGGTAA+TGG 0.484085 1_2:-56343753 None:intergenic
CCTATTACCACAACTCAAGT+TGG 0.484916 1_2:+56343768 Msa0078670:CDS
ACCACCATCTGCATTGCCTA+TGG 0.489573 1_2:+56343491 Msa0078670:CDS
TGAAGAAAATCCCCACCATA+TGG 0.492962 1_2:-56343864 None:intergenic
CAAGTATCGAACACTGGAGT+TGG 0.497318 1_2:+56340745 Msa0078670:CDS
TTAATATTTCTCGAGTATGT+TGG 0.504174 1_2:-56343423 None:intergenic
GATGATGAAGCAACTGCCAT+TGG 0.509238 1_2:+56342229 Msa0078670:CDS
TATGTAGCCTAAATATCATT+CGG 0.509419 1_2:-56343976 None:intergenic
AGGTTGGACCAAATATCAAC+GGG 0.512849 1_2:+56343697 Msa0078670:CDS
TTCACATTGTACCATATGGT+GGG 0.526608 1_2:+56343853 Msa0078670:CDS
CCATATGGTACAATGTGAAA+TGG 0.527122 1_2:-56343849 None:intergenic
GCTGGGGAAGCACCCATGAA+AGG 0.527399 1_2:-56343924 None:intergenic
CCCAGCTGATCAGGAAGCTA+CGG 0.531217 1_2:+56343941 Msa0078670:CDS
TGAGTTGTGGTAATAGGAAA+TGG 0.532382 1_2:-56343762 None:intergenic
ATGTGAAATGGTGGTAATAG+TGG 0.532968 1_2:-56343837 None:intergenic
ATGCTGAAATTCTAAGGGCT+AGG 0.533181 1_2:+56342092 Msa0078670:CDS
TCCCCAACACCACCTGATCA+AGG 0.540123 1_2:+56342010 Msa0078670:CDS
TATGATGATGGTGGTGCTAG+TGG 0.540923 1_2:+56342271 Msa0078670:CDS
TCGACATCTGTCATGGGGCA+AGG 0.545512 1_2:-56342469 None:intergenic
GATGAAGCAACTGCCATTGG+AGG 0.552119 1_2:+56342232 Msa0078670:CDS
GGTTATTGTTGGCGCAAGTA+CGG 0.553147 1_2:+56342541 Msa0078670:CDS
AAATTCTAAGGGCTAGGAAA+GGG 0.557406 1_2:+56342098 Msa0078670:CDS
TCACATTGTACCATATGGTG+GGG 0.559672 1_2:+56343854 Msa0078670:CDS
CCGTAGCTTCCTGATCAGCT+GGG 0.562306 1_2:-56343941 None:intergenic
TCCTTCTTCTGGTTATTCCG+AGG 0.562652 1_2:+56340822 Msa0078670:CDS
ACCTCGGAATAACCAGAAGA+AGG 0.563675 1_2:-56340823 None:intergenic
GATATCGGAAATACAGGAAG+CGG 0.565608 1_2:-56343726 None:intergenic
ATAGGAAATGGTGGTAATGG+TGG 0.566411 1_2:-56343750 None:intergenic
TTTGTCAATGACAGGTCCGT+GGG 0.568911 1_2:-56343394 None:intergenic
GAAATTCTAAGGGCTAGGAA+AGG 0.571481 1_2:+56342097 Msa0078670:CDS
TTTCACATTGTACCATATGG+TGG 0.572755 1_2:+56343852 Msa0078670:CDS
CCTATTGATACAAATCAGGT+TGG 0.576330 1_2:+56343681 Msa0078670:CDS
GCAATTCAGGAAGAGAAAGA+GGG 0.576835 1_2:+56342423 Msa0078670:intron
TCCTTGATCAGGTGGTGTTG+GGG 0.585344 1_2:-56342011 None:intergenic
GTTTAATAAAGGCCGCGTCA+TGG 0.585854 1_2:-56343583 None:intergenic
GCAGTTGCTTCATCATCCGC+AGG 0.586772 1_2:-56342223 None:intergenic
GCAGATGGTGGTGATGGTGG+TGG 0.586837 1_2:-56343480 None:intergenic
ATTAGGTCCAACTTGAGTTG+TGG 0.589594 1_2:-56343775 None:intergenic
TGTCTTCATCACTTTCAACT+CGG 0.590497 1_2:-56342507 None:intergenic
CTTATGGTATGAATTACGGT+TGG 0.590836 1_2:+56343553 Msa0078670:CDS
CAGCAACATCATTCCTCCAA+TGG 0.594550 1_2:-56342245 None:intergenic
TGATGGTGGTGGCAGCATGT+TGG 0.595809 1_2:-56343469 None:intergenic
AATGCAGATGGTGGTGATGG+TGG 0.599942 1_2:-56343483 None:intergenic
CGGCCTTTATTAAACATGGT+GGG 0.600743 1_2:+56343591 Msa0078670:CDS
GAAAATCAAGTATCGAACAC+TGG 0.601147 1_2:+56340739 Msa0078670:CDS
CAGGTTGGACCAAATATCAA+CGG 0.601960 1_2:+56343696 Msa0078670:CDS
TACGGATGCAAAGAGATCAA+AGG 0.609552 1_2:+56342559 Msa0078670:CDS
GCACCATGTCCTTGATCAGG+TGG 0.613784 1_2:-56342019 None:intergenic
GACGCGGCCTTTATTAAACA+TGG 0.614916 1_2:+56343587 Msa0078670:CDS
TCTGAAACTTGATCATCAGT+TGG 0.615285 1_2:-56342196 None:intergenic
AAGGAAATCCTAACAATCGT+AGG 0.617006 1_2:+56342578 Msa0078670:CDS
TTTGCTCGACATCTGTCATG+GGG 0.618862 1_2:-56342474 None:intergenic
GGCAATGCAGATGGTGGTGA+TGG 0.620508 1_2:-56343486 None:intergenic
TAGCCATATTGGTGAAAAGG+GGG 0.626106 1_2:-56343525 None:intergenic
GCGGCCTTTATTAAACATGG+TGG 0.630164 1_2:+56343590 Msa0078670:CDS
AAAAGAGTATATAAATACCT+CGG 0.632254 1_2:-56340839 None:intergenic
ATGTTGCTGCAGTATGATGA+TGG 0.642366 1_2:+56342259 Msa0078670:CDS
TGAACCATAGGCAATGCAGA+TGG 0.643972 1_2:-56343495 None:intergenic
GATTGCCATGTGGCAACAAG+AGG 0.647237 1_2:+56341932 Msa0078670:CDS
TTGGTTGCTCTGCTAAACAA+AGG 0.648861 1_2:+56340764 Msa0078670:CDS
CGTAGCTTCCTGATCAGCTG+GGG 0.653265 1_2:-56343940 None:intergenic
TATGATGGAAAACATACCCA+CGG 0.656713 1_2:+56343378 Msa0078670:CDS
GGGTCTGTAAGGTTGCATCA+TGG 0.657757 1_2:-56343619 None:intergenic
GCAAAATGATGCAAATGTAG+TGG 0.669148 1_2:+56342063 Msa0078670:CDS
ATAGCCATATTGGTGAAAAG+GGG 0.680391 1_2:-56343526 None:intergenic
CTAGTGGATCTTGTCCACAA+AGG 0.681150 1_2:+56342287 Msa0078670:CDS
TTGCTGCAGTATGATGATGG+TGG 0.684081 1_2:+56342262 Msa0078670:CDS
ACATCTGTCATGGGGCAAGG+TGG 0.684322 1_2:-56342466 None:intergenic
GGGGATGAGAAATTCAACAC+TGG 0.684419 1_2:-56341992 None:intergenic
GTTGTGGTAATAGGAAATGG+TGG 0.688257 1_2:-56343759 None:intergenic
TCGGAATAACCAGAAGAAGG+AGG 0.688798 1_2:-56340820 None:intergenic
TTCTGCTGATGATTGCCATG+TGG 0.692089 1_2:+56341922 Msa0078670:CDS
TATGGTACAATGTGAAATGG+TGG 0.694153 1_2:-56343846 None:intergenic
ACCATAGGCAATGCAGATGG+TGG 0.695874 1_2:-56343492 None:intergenic
ACACCACCTGATCAAGGACA+TGG 0.702867 1_2:+56342016 Msa0078670:CDS
AGCCATATTGGTGAAAAGGG+GGG 0.719943 1_2:-56343524 None:intergenic
TCAAGTTTCAGATACACCTG+CGG 0.763156 1_2:+56342207 Msa0078670:CDS
GTTGGCCTAATACCATGACG+CGG 0.807585 1_2:+56343571 Msa0078670:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTCATCAAAAAATAAAAA+AGG - chr1_2:56341076-56341095 None:intergenic 10.0%
!!! ATTTATCATTTTATTTTAAG+CGG + chr1_2:56343096-56343115 Msa0078670:intron 10.0%
!! GTGACATTATTTAAAAAAAA+GGG - chr1_2:56341382-56341401 None:intergenic 15.0%
!! AGTGACATTATTTAAAAAAA+AGG - chr1_2:56341383-56341402 None:intergenic 15.0%
!!! TTTTGTTTTTATAGTTTCAT+AGG + chr1_2:56341720-56341739 Msa0078670:intron 15.0%
!! TTGTAAAAATATCAAAAACA+AGG - chr1_2:56342889-56342908 None:intergenic 15.0%
!! CAAATTTAATATCAAATTCT+AGG - chr1_2:56343048-56343067 None:intergenic 15.0%
!! AGAATTTGATATTAAATTTG+TGG + chr1_2:56343048-56343067 Msa0078670:intron 15.0%
!! TACTAATACATTTATGTAAA+TGG - chr1_2:56343200-56343219 None:intergenic 15.0%
!! TCACACAATATTAAATAATT+AGG - chr1_2:56343263-56343282 None:intergenic 15.0%
!!! AAAAGAGTATATAAATACCT+CGG - chr1_2:56340842-56340861 None:intergenic 20.0%
!!! AATGGCTTTTCAATTAAATT+CGG - chr1_2:56341326-56341345 None:intergenic 20.0%
!! TCTTCATTCAAGATTTAAAA+TGG - chr1_2:56341344-56341363 None:intergenic 20.0%
!! ATATTCCTAATGAGAAATAA+TGG - chr1_2:56341533-56341552 None:intergenic 20.0%
!! TACATGTTAGATTGAATTAA+AGG - chr1_2:56341632-56341651 None:intergenic 20.0%
!! ATAAATAAATCATTCCATGT+TGG - chr1_2:56341774-56341793 None:intergenic 20.0%
!! GTAATTGAATCAAATTCATT+AGG + chr1_2:56341898-56341917 Msa0078670:intron 20.0%
!! ACATTGTTGCTAATAAATAA+AGG + chr1_2:56342369-56342388 Msa0078670:intron 20.0%
!!! TTTTACGATAAATCACTTAT+CGG - chr1_2:56343021-56343040 None:intergenic 20.0%
!! TTTAATATTGTGTGAATTGT+AGG + chr1_2:56343268-56343287 Msa0078670:intron 20.0%
!! TTAATATTGTGTGAATTGTA+GGG + chr1_2:56343269-56343288 Msa0078670:intron 20.0%
!!! TATGTAACAAGTACATATTT+TGG - chr1_2:56343360-56343379 None:intergenic 20.0%
!!! AGAAAATTTTGTTCACTTAT+GGG - chr1_2:56343642-56343661 None:intergenic 20.0%
!!! TAGAAAATTTTGTTCACTTA+TGG - chr1_2:56343643-56343662 None:intergenic 20.0%
! GAATTTGGATTCGTTTATAT+TGG - chr1_2:56341454-56341473 None:intergenic 25.0%
! AAGTTGTATTAGTGCTAAAA+TGG - chr1_2:56341565-56341584 None:intergenic 25.0%
! ATTGAATTAAAGGTCTGATT+AGG - chr1_2:56341622-56341641 None:intergenic 25.0%
! TGAAAAATGCTGAAATTCTA+AGG + chr1_2:56342086-56342105 Msa0078670:CDS 25.0%
! GAAAAATGCTGAAATTCTAA+GGG + chr1_2:56342087-56342106 Msa0078670:CDS 25.0%
! AAACGATTATAAAACCTTTG+TGG - chr1_2:56342304-56342323 None:intergenic 25.0%
! AATAATTACCTACGATTGTT+AGG - chr1_2:56342589-56342608 None:intergenic 25.0%
! TGCATTAACACATATAAAAG+AGG - chr1_2:56342614-56342633 None:intergenic 25.0%
!!! TTTTCTTTTTCATTCACTCT+TGG + chr1_2:56342657-56342676 Msa0078670:intron 25.0%
! AATGACATAATGATCATTGA+CGG + chr1_2:56342827-56342846 Msa0078670:intron 25.0%
! AATCTAACAATGATTGATGT+TGG - chr1_2:56342958-56342977 None:intergenic 25.0%
!!! TAGAGATGATTTTCAAGTAT+TGG + chr1_2:56342978-56342997 Msa0078670:intron 25.0%
!!! AGAGATGATTTTCAAGTATT+GGG + chr1_2:56342979-56342998 Msa0078670:intron 25.0%
! TAATATTGTGTGAATTGTAG+GGG + chr1_2:56343270-56343289 Msa0078670:intron 25.0%
! TTGTGACATTAAAAAACAAG+TGG + chr1_2:56343317-56343336 Msa0078670:CDS 25.0%
! ACATTAAAAAACAAGTGGAA+AGG + chr1_2:56343322-56343341 Msa0078670:CDS 25.0%
! CATTAAAAAACAAGTGGAAA+GGG + chr1_2:56343323-56343342 Msa0078670:CDS 25.0%
!! TATGTACTTGTTACATATGA+TGG + chr1_2:56343363-56343382 Msa0078670:CDS 25.0%
! TTAATATTTCTCGAGTATGT+TGG - chr1_2:56343426-56343445 None:intergenic 25.0%
! ATACCTTATGGTATGAATTA+CGG + chr1_2:56343549-56343568 Msa0078670:CDS 25.0%
! AAGTTGGACCTAATATTAAT+GGG + chr1_2:56343784-56343803 Msa0078670:CDS 25.0%
! GAAATTGACCCATTAATATT+AGG - chr1_2:56343795-56343814 None:intergenic 25.0%
!! GTTGTTGTTATTGGTGTTAT+TGG - chr1_2:56340704-56340723 None:intergenic 30.0%
! GTTGTTGTTGTTGTTGTTAT+TGG - chr1_2:56340713-56340732 None:intergenic 30.0%
GGTGAAAAATGATGTGAATT+TGG - chr1_2:56341469-56341488 None:intergenic 30.0%
! ATGCACCATTATTTCTCATT+AGG + chr1_2:56341525-56341544 Msa0078670:intron 30.0%
!! CAAATAGTTTTACACCAACA+TGG + chr1_2:56341757-56341776 Msa0078670:intron 30.0%
ATCAGTTGTACTATCTTCTT+TGG - chr1_2:56342158-56342177 None:intergenic 30.0%
!! GCTCAATTATTTTGCAATTC+AGG + chr1_2:56342410-56342429 Msa0078670:intron 30.0%
! TGAAAGTGATGAAGACATTT+TGG + chr1_2:56342513-56342532 Msa0078670:CDS 30.0%
!! TTTTGGATGATGGTTATTGT+TGG + chr1_2:56342530-56342549 Msa0078670:CDS 30.0%
GTCAATGATCATTATGTCAT+TGG - chr1_2:56342828-56342847 None:intergenic 30.0%
AATATTGTGTGAATTGTAGG+GGG + chr1_2:56343271-56343290 Msa0078670:intron 30.0%
TCGAGAAATATTAATGCATC+TGG + chr1_2:56343432-56343451 Msa0078670:CDS 30.0%
TATAGCCATATTGGTGAAAA+GGG - chr1_2:56343530-56343549 None:intergenic 30.0%
ATATAGCCATATTGGTGAAA+AGG - chr1_2:56343531-56343550 None:intergenic 30.0%
CATAAGGTATATAGCCATAT+TGG - chr1_2:56343539-56343558 None:intergenic 30.0%
CAATATGGCTATATACCTTA+TGG + chr1_2:56343537-56343556 Msa0078670:CDS 30.0%
TTACCCACCATGTTTAATAA+AGG - chr1_2:56343597-56343616 None:intergenic 30.0%
AACTCCTATTGATACAAATC+AGG + chr1_2:56343677-56343696 Msa0078670:CDS 30.0%
! CAAGTTGGACCTAATATTAA+TGG + chr1_2:56343783-56343802 Msa0078670:CDS 30.0%
!! GTTATTGGTGTTATTGGTGT+TGG - chr1_2:56340698-56340717 None:intergenic 35.0%
!! GAAAATCAAGTATCGAACAC+TGG + chr1_2:56340739-56340758 Msa0078670:CDS 35.0%
!! ACTTTTGATAACCACACAAG+CGG - chr1_2:56341495-56341514 None:intergenic 35.0%
! CATTTGCATCATTTTGCACA+TGG - chr1_2:56342060-56342079 None:intergenic 35.0%
GCAAAATGATGCAAATGTAG+TGG + chr1_2:56342063-56342082 Msa0078670:CDS 35.0%
! AAATTCTAAGGGCTAGGAAA+GGG + chr1_2:56342098-56342117 Msa0078670:CDS 35.0%
ACTGCTTCAGAAAAGTTCAT+TGG - chr1_2:56342130-56342149 None:intergenic 35.0%
! TCTGAAACTTGATCATCAGT+TGG - chr1_2:56342199-56342218 None:intergenic 35.0%
TGTCTTCATCACTTTCAACT+CGG - chr1_2:56342510-56342529 None:intergenic 35.0%
! GATGAAGACATTTTGGATGA+TGG + chr1_2:56342520-56342539 Msa0078670:CDS 35.0%
AAGGAAATCCTAACAATCGT+AGG + chr1_2:56342578-56342597 Msa0078670:CDS 35.0%
TCCTCTCTATATATACACCA+AGG - chr1_2:56342683-56342702 None:intergenic 35.0%
TTGGTGTATATATAGAGAGG+AGG + chr1_2:56342682-56342701 Msa0078670:intron 35.0%
ACAACAGTGTTCATCATCAT+TGG - chr1_2:56342759-56342778 None:intergenic 35.0%
!! TTATGTCATTGGCTTAGTTG+TGG - chr1_2:56342817-56342836 None:intergenic 35.0%
!! TGATTGATGTTGGTTCAACA+CGG - chr1_2:56342948-56342967 None:intergenic 35.0%
! TATGATGGAAAACATACCCA+CGG + chr1_2:56343378-56343397 Msa0078670:CDS 35.0%
!!! GGTCTTTTTTTGTCAATGAC+AGG - chr1_2:56343405-56343424 None:intergenic 35.0%
ATAGCCATATTGGTGAAAAG+GGG - chr1_2:56343529-56343548 None:intergenic 35.0%
CAACCGTAATTCATACCATA+AGG - chr1_2:56343555-56343574 None:intergenic 35.0%
CTTATGGTATGAATTACGGT+TGG + chr1_2:56343553-56343572 Msa0078670:CDS 35.0%
! CCAACCTGATTTGTATCAAT+AGG - chr1_2:56343684-56343703 None:intergenic 35.0%
CCTATTGATACAAATCAGGT+TGG + chr1_2:56343681-56343700 Msa0078670:CDS 35.0%
GTAATAGGAAATGGTGGTAA+TGG - chr1_2:56343756-56343775 None:intergenic 35.0%
TGAGTTGTGGTAATAGGAAA+TGG - chr1_2:56343765-56343784 None:intergenic 35.0%
ATGTGAAATGGTGGTAATAG+TGG - chr1_2:56343840-56343859 None:intergenic 35.0%
TATGGTACAATGTGAAATGG+TGG - chr1_2:56343849-56343868 None:intergenic 35.0%
CCATATGGTACAATGTGAAA+TGG - chr1_2:56343852-56343871 None:intergenic 35.0%
CCATTTCACATTGTACCATA+TGG + chr1_2:56343849-56343868 Msa0078670:CDS 35.0%
TTTCACATTGTACCATATGG+TGG + chr1_2:56343852-56343871 Msa0078670:CDS 35.0%
TTCACATTGTACCATATGGT+GGG + chr1_2:56343853-56343872 Msa0078670:CDS 35.0%
TTGGTTGCTCTGCTAAACAA+AGG + chr1_2:56340764-56340783 Msa0078670:CDS 40.0%
AATGAATCTCCTCCTTCTTC+TGG + chr1_2:56340811-56340830 Msa0078670:CDS 40.0%
AAATGAACCAGTAGCAACCA+CGG - chr1_2:56341250-56341269 None:intergenic 40.0%
! ATGCTGAAATTCTAAGGGCT+AGG + chr1_2:56342092-56342111 Msa0078670:CDS 40.0%
! GAAATTCTAAGGGCTAGGAA+AGG + chr1_2:56342097-56342116 Msa0078670:CDS 40.0%
TCAAGTTTCAGATACACCTG+CGG + chr1_2:56342207-56342226 Msa0078670:CDS 40.0%
ATGTTGCTGCAGTATGATGA+TGG + chr1_2:56342259-56342278 Msa0078670:CDS 40.0%
TGCAATTCAGGAAGAGAAAG+AGG + chr1_2:56342422-56342441 Msa0078670:intron 40.0%
GCAATTCAGGAAGAGAAAGA+GGG + chr1_2:56342423-56342442 Msa0078670:intron 40.0%
! TTTTGCTCGACATCTGTCAT+GGG - chr1_2:56342478-56342497 None:intergenic 40.0%
! TTTTTGCTCGACATCTGTCA+TGG - chr1_2:56342479-56342498 None:intergenic 40.0%
TACGGATGCAAAGAGATCAA+AGG + chr1_2:56342559-56342578 Msa0078670:CDS 40.0%
! TTTTCATTCACTCTTGGCCT+TGG + chr1_2:56342663-56342682 Msa0078670:intron 40.0%
! GCCTTGGTGTATATATAGAG+AGG + chr1_2:56342679-56342698 Msa0078670:intron 40.0%
TTGACGGTTTGACGAAAACA+TGG + chr1_2:56342843-56342862 Msa0078670:intron 40.0%
TGACGGTTTGACGAAAACAT+GGG + chr1_2:56342844-56342863 Msa0078670:intron 40.0%
TAGCCATATTGGTGAAAAGG+GGG - chr1_2:56343528-56343547 None:intergenic 40.0%
CGGCCTTTATTAAACATGGT+GGG + chr1_2:56343591-56343610 Msa0078670:CDS 40.0%
TGTTCACTTATGGGTCTGTA+AGG - chr1_2:56343633-56343652 None:intergenic 40.0%
! CAGGTTGGACCAAATATCAA+CGG + chr1_2:56343696-56343715 Msa0078670:CDS 40.0%
AGGTTGGACCAAATATCAAC+GGG + chr1_2:56343697-56343716 Msa0078670:CDS 40.0%
GATATCGGAAATACAGGAAG+CGG - chr1_2:56343729-56343748 None:intergenic 40.0%
!! ATAGGAAATGGTGGTAATGG+TGG - chr1_2:56343753-56343772 None:intergenic 40.0%
GTTGTGGTAATAGGAAATGG+TGG - chr1_2:56343762-56343781 None:intergenic 40.0%
! CCAACTTGAGTTGTGGTAAT+AGG - chr1_2:56343771-56343790 None:intergenic 40.0%
CCTATTACCACAACTCAAGT+TGG + chr1_2:56343768-56343787 Msa0078670:CDS 40.0%
! ATTAGGTCCAACTTGAGTTG+TGG - chr1_2:56343778-56343797 None:intergenic 40.0%
AGTGGTGATATCGGAAATAC+AGG - chr1_2:56343822-56343841 None:intergenic 40.0%
GGTGGTAATAGTGGTGATAT+CGG - chr1_2:56343831-56343850 None:intergenic 40.0%
TCACATTGTACCATATGGTG+GGG + chr1_2:56343854-56343873 Msa0078670:CDS 40.0%
TGAAGAAAATCCCCACCATA+TGG - chr1_2:56343867-56343886 None:intergenic 40.0%
!! ATATGGTGGGGATTTTCTTC+AGG + chr1_2:56343866-56343885 Msa0078670:CDS 40.0%
!! TTTCTTCAGGTTGGTGGAAA+TGG + chr1_2:56343879-56343898 Msa0078670:CDS 40.0%
TGCTCAAGTCTTTCCTTTCA+TGG + chr1_2:56343911-56343930 Msa0078670:CDS 40.0%
GCTCAAGTCTTTCCTTTCAT+GGG + chr1_2:56343912-56343931 Msa0078670:CDS 40.0%
!! CAAGTATCGAACACTGGAGT+TGG + chr1_2:56340745-56340764 Msa0078670:CDS 45.0%
TCGGAATAACCAGAAGAAGG+AGG - chr1_2:56340823-56340842 None:intergenic 45.0%
! TCCTTCTTCTGGTTATTCCG+AGG + chr1_2:56340822-56340841 Msa0078670:CDS 45.0%
ACCTCGGAATAACCAGAAGA+AGG - chr1_2:56340826-56340845 None:intergenic 45.0%
TTCTGCTGATGATTGCCATG+TGG + chr1_2:56341922-56341941 Msa0078670:CDS 45.0%
GGGGATGAGAAATTCAACAC+TGG - chr1_2:56341995-56342014 None:intergenic 45.0%
GATGATGAAGCAACTGCCAT+TGG + chr1_2:56342229-56342248 Msa0078670:CDS 45.0%
CAGCAACATCATTCCTCCAA+TGG - chr1_2:56342248-56342267 None:intergenic 45.0%
!! TTGCTGCAGTATGATGATGG+TGG + chr1_2:56342262-56342281 Msa0078670:CDS 45.0%
!! TATGATGATGGTGGTGCTAG+TGG + chr1_2:56342271-56342290 Msa0078670:CDS 45.0%
! CTAGTGGATCTTGTCCACAA+AGG + chr1_2:56342287-56342306 Msa0078670:CDS 45.0%
TTTGCTCGACATCTGTCATG+GGG - chr1_2:56342477-56342496 None:intergenic 45.0%
GGTTATTGTTGGCGCAAGTA+CGG + chr1_2:56342541-56342560 Msa0078670:CDS 45.0%
TTTGTCAATGACAGGTCCGT+GGG - chr1_2:56343397-56343416 None:intergenic 45.0%
! TTTTGTCAATGACAGGTCCG+TGG - chr1_2:56343398-56343417 None:intergenic 45.0%
TGAACCATAGGCAATGCAGA+TGG - chr1_2:56343498-56343517 None:intergenic 45.0%
AGCCATATTGGTGAAAAGGG+GGG - chr1_2:56343527-56343546 None:intergenic 45.0%
GTTTAATAAAGGCCGCGTCA+TGG - chr1_2:56343586-56343605 None:intergenic 45.0%
GACGCGGCCTTTATTAAACA+TGG + chr1_2:56343587-56343606 Msa0078670:CDS 45.0%
GCGGCCTTTATTAAACATGG+TGG + chr1_2:56343590-56343609 Msa0078670:CDS 45.0%
GGAATTGGCCCGTTGATATT+TGG - chr1_2:56343708-56343727 None:intergenic 45.0%
GGAAATACAGGAAGCGGAAT+TGG - chr1_2:56343723-56343742 None:intergenic 45.0%
GGTGGTGATATCGGAAATAC+AGG - chr1_2:56343735-56343754 None:intergenic 45.0%
!! GGTGGTAATGGTGGTGATAT+CGG - chr1_2:56343744-56343763 None:intergenic 45.0%
GTCGTGTGTGCATGCATACA+TGG + chr1_2:56341224-56341243 Msa0078670:intron 50.0%
! TTTTCACCTCTCCGCTTGTG+TGG + chr1_2:56341481-56341500 Msa0078670:intron 50.0%
TGATAACCACACAAGCGGAG+AGG - chr1_2:56341490-56341509 None:intergenic 50.0%
GATTGCCATGTGGCAACAAG+AGG + chr1_2:56341932-56341951 Msa0078670:CDS 50.0%
CATCTCCTCTTGTTGCCACA+TGG - chr1_2:56341940-56341959 None:intergenic 50.0%
! TCCTTGATCAGGTGGTGTTG+GGG - chr1_2:56342014-56342033 None:intergenic 50.0%
GTCCTTGATCAGGTGGTGTT+GGG - chr1_2:56342015-56342034 None:intergenic 50.0%
TGTCCTTGATCAGGTGGTGT+TGG - chr1_2:56342016-56342035 None:intergenic 50.0%
ACACCACCTGATCAAGGACA+TGG + chr1_2:56342016-56342035 Msa0078670:CDS 50.0%
TCTGCACCATGTCCTTGATC+AGG - chr1_2:56342025-56342044 None:intergenic 50.0%
GATGAAGCAACTGCCATTGG+AGG + chr1_2:56342232-56342251 Msa0078670:CDS 50.0%
!! AATGCAGATGGTGGTGATGG+TGG - chr1_2:56343486-56343505 None:intergenic 50.0%
ACCACCATCTGCATTGCCTA+TGG + chr1_2:56343491-56343510 Msa0078670:CDS 50.0%
ACCATAGGCAATGCAGATGG+TGG - chr1_2:56343495-56343514 None:intergenic 50.0%
ATTGGTGAAAAGGGGGGAGA+GGG - chr1_2:56343521-56343540 None:intergenic 50.0%
TATTGGTGAAAAGGGGGGAG+AGG - chr1_2:56343522-56343541 None:intergenic 50.0%
! CTCCCCCCTTTTCACCAATA+TGG + chr1_2:56343522-56343541 Msa0078670:CDS 50.0%
! GTTGGCCTAATACCATGACG+CGG + chr1_2:56343571-56343590 Msa0078670:CDS 50.0%
AAAGGCCGCGTCATGGTATT+AGG - chr1_2:56343579-56343598 None:intergenic 50.0%
GGGTCTGTAAGGTTGCATCA+TGG - chr1_2:56343622-56343641 None:intergenic 50.0%
! GGTGGGGATTTTCTTCAGGT+TGG + chr1_2:56343870-56343889 Msa0078670:CDS 50.0%
!!! GGGGATTTTCTTCAGGTTGG+TGG + chr1_2:56343873-56343892 Msa0078670:CDS 50.0%
TGTGCATGCATACATGGCCG+TGG + chr1_2:56341230-56341249 Msa0078670:intron 55.0%
TACATGGCCGTGGTTGCTAC+TGG + chr1_2:56341240-56341259 Msa0078670:intron 55.0%
TCCCCAACACCACCTGATCA+AGG + chr1_2:56342010-56342029 Msa0078670:CDS 55.0%
GCACCATGTCCTTGATCAGG+TGG - chr1_2:56342022-56342041 None:intergenic 55.0%
GCAGTTGCTTCATCATCCGC+AGG - chr1_2:56342226-56342245 None:intergenic 55.0%
ACATCTGTCATGGGGCAAGG+TGG - chr1_2:56342469-56342488 None:intergenic 55.0%
TCGACATCTGTCATGGGGCA+AGG - chr1_2:56342472-56342491 None:intergenic 55.0%
!! TGATGGTGGTGGCAGCATGT+TGG - chr1_2:56343472-56343491 None:intergenic 55.0%
! GGCAATGCAGATGGTGGTGA+TGG - chr1_2:56343489-56343508 None:intergenic 55.0%
CGTAGCTTCCTGATCAGCTG+GGG - chr1_2:56343943-56343962 None:intergenic 55.0%
CCGTAGCTTCCTGATCAGCT+GGG - chr1_2:56343944-56343963 None:intergenic 55.0%
CCCAGCTGATCAGGAAGCTA+CGG + chr1_2:56343941-56343960 Msa0078670:CDS 55.0%
TCCGTAGCTTCCTGATCAGC+TGG - chr1_2:56343945-56343964 None:intergenic 55.0%
!! GCAGATGGTGGTGATGGTGG+TGG - chr1_2:56343483-56343502 None:intergenic 60.0%
!! GCTGGGGAAGCACCCATGAA+AGG - chr1_2:56343927-56343946 None:intergenic 60.0%
GGGGGGAGAGGGTGAACCAT+AGG - chr1_2:56343510-56343529 None:intergenic 65.0%
GGGTGCTTCCCCAGCTGATC+AGG + chr1_2:56343932-56343951 Msa0078670:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 56340667 56343983 56340667 ID=Msa0078670;Name=Msa0078670
chr1_2 mRNA 56340667 56343983 56340667 ID=Msa0078670-mRNA-1;Parent=Msa0078670;Name=Msa0078670-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0|1|0.66|0.75|4|0|493
chr1_2 exon 56340667 56340897 56340667 ID=Msa0078670-mRNA-1:exon:17612;Parent=Msa0078670-mRNA-1
chr1_2 exon 56341920 56342308 56341920 ID=Msa0078670-mRNA-1:exon:17613;Parent=Msa0078670-mRNA-1
chr1_2 exon 56342432 56342599 56342432 ID=Msa0078670-mRNA-1:exon:17614;Parent=Msa0078670-mRNA-1
chr1_2 exon 56343290 56343983 56343290 ID=Msa0078670-mRNA-1:exon:17615;Parent=Msa0078670-mRNA-1
chr1_2 CDS 56340667 56340897 56340667 ID=Msa0078670-mRNA-1:cds;Parent=Msa0078670-mRNA-1
chr1_2 CDS 56341920 56342308 56341920 ID=Msa0078670-mRNA-1:cds;Parent=Msa0078670-mRNA-1
chr1_2 CDS 56342432 56342599 56342432 ID=Msa0078670-mRNA-1:cds;Parent=Msa0078670-mRNA-1
chr1_2 CDS 56343290 56343983 56343290 ID=Msa0078670-mRNA-1:cds;Parent=Msa0078670-mRNA-1
Gene Sequence

>Msa0078670

ATGTCTAATATCATGGAAAACAACAACTCCAACACCAATAACACCAATAACAACAACAACAACAACAACAATGAAAATCAAGTATCGAACACTGGAGTTGGTTGCTCTGCTAAACAAAGGAAGAGAAGAGATTTGATCGATTTAAATGAATCTCCTCCTTCTTCTGGTTATTCCGAGGTATTTATATACTCTTTTTACGCTAATACATGTAAAGATGATGATCAAGATCATGCTTCTGCTGATGATTGCCATGTGGCAACAAGAGGAGATGCAAAACTTCAAGCTGAAACTGAAGTTCAACAACCAGTGTTGAATTTCTCATCCCCAACACCACCTGATCAAGGACATGGTGCAGAAGAAGAACAAGACCATGTGCAAAATGATGCAAATGTAGTGGTGAAAAATGCTGAAATTCTAAGGGCTAGGAAAGGGAAGATGCCAATGAACTTTTCTGAAGCAGTGCATGCCAAAGAAGATAGTACAACTGATGATAAAGAAACAAATGTACCAACTGATGATCAAGTTTCAGATACACCTGCGGATGATGAAGCAACTGCCATTGGAGGAATGATGTTGCTGCAGTATGATGATGGTGGTGCTAGTGGATCTTGTCCACAAAGGAAGAGAAAGAGGGACTTCTCTGAATACTATAAACCACCTTGCCCCATGACAGATGTCGAGCAAAAAATAGTGATCCGAGTTGAAAGTGATGAAGACATTTTGGATGATGGTTATTGTTGGCGCAAGTACGGATGCAAAGAGATCAAAGGAAATCCTAACAATCGTAGGGGGTACTACAGATGCGCAACACACAATTGTGACATTAAAAAACAAGTGGAAAGGGATGCTAAAGATCCAAAATATGTACTTGTTACATATGATGGAAAACATACCCACGGACCTGTCATTGACAAAAAAAGACCAACATACTCGAGAAATATTAATGCATCTGGAGTTCGTAGAAATGCCAACATGCTGCCACCACCATCACCACCATCTGCATTGCCTATGGTTCACCCTCTCCCCCCTTTTCACCAATATGGCTATATACCTTATGGTATGAATTACGGTTGGCCTAATACCATGACGCGGCCTTTATTAAACATGGTGGGTAACACCATGATGCAACCTTACAGACCCATAAGTGAACAAAATTTTCTAGAACATCGTGCTTCAACTCCTATTGATACAAATCAGGTTGGACCAAATATCAACGGGCCAATTCCGCTTCCTGTATTTCCGATATCACCACCATTACCACCATTTCCTATTACCACAACTCAAGTTGGACCTAATATTAATGGGTCAATTTCACTTCCTGTATTTCCGATATCACCACTATTACCACCATTTCACATTGTACCATATGGTGGGGATTTTCTTCAGGTTGGTGGAAATGGTATTGTTGCTGCTCAAGTCTTTCCTTTCATGGGTGCTTCCCCAGCTGATCAGGAAGCTACGGATGTTCCTGACACCGAATGA
Protein sequence

>Msa0078670

MSNIMENNNSNTNNTNNNNNNNNNENQVSNTGVGCSAKQRKRRDLIDLNESPPSSGYSEVFIYSFYANTCKDDDQDHASADDCHVATRGDAKLQAETEVQQPVLNFSSPTPPDQGHGAEEEQDHVQNDANVVVKNAEILRARKGKMPMNFSEAVHAKEDSTTDDKETNVPTDDQVSDTPADDEATAIGGMMLLQYDDGGASGSCPQRKRKRDFSEYYKPPCPMTDVEQKIVIRVESDEDILDDGYCWRKYGCKEIKGNPNNRRGYYRCATHNCDIKKQVERDAKDPKYVLVTYDGKHTHGPVIDKKRPTYSRNINASGVRRNANMLPPPSPPSALPMVHPLPPFHQYGYIPYGMNYGWPNTMTRPLLNMVGNTMMQPYRPISEQNFLEHRASTPIDTNQVGPNINGPIPLPVFPISPPLPPFPITTTQVGPNINGSISLPVFPISPLLPPFHIVPYGGDFLQVGGNGIVAAQVFPFMGASPADQEATDVPDTE*