AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0079310

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0079310 MtrunA17_Chr4g0029241 68.953 277 14 2 2 238 171 415 4.97e-127 365
Msa0079310 MtrunA17_Chr2g0326531 57.034 263 41 2 2 224 173 403 4.87e-95 284
Msa0079310 MtrunA17_Chr4g0063881 26.728 217 149 3 2 210 59 273 3.53e-23 97.1
Msa0079310 MtrunA17_Chr5g0428031 26.872 227 154 5 2 220 57 279 2.01e-21 92.0
Msa0079310 MtrunA17_Chr2g0304111 24.762 210 146 4 1 200 70 277 5.49e-20 88.2
Msa0079310 MtrunA17_Chr3g0107011 29.167 192 89 8 2 186 62 213 1.52e-19 86.7
Msa0079310 MtrunA17_Chr1g0150321 27.979 193 102 5 2 192 61 218 2.20e-19 86.3
Msa0079310 MtrunA17_Chr8g0379091 25.714 210 142 6 2 200 74 280 9.67e-19 84.7
Msa0079310 MtrunA17_Chr2g0284011 26.667 210 139 6 2 200 60 265 1.11e-18 84.3
Msa0079310 MtrunA17_Chr8g0346081 24.155 207 147 5 2 200 65 269 1.60e-18 84.0
Msa0079310 MtrunA17_Chr8g0346071 31.405 121 81 1 6 126 69 187 2.51e-18 83.2
Msa0079310 MtrunA17_Chr6g0468751 28.108 185 98 3 2 186 67 216 5.09e-18 82.4
Msa0079310 MtrunA17_Chr6g0453681 28.108 185 98 3 2 186 67 216 5.23e-18 82.4
Msa0079310 MtrunA17_Chr4g0013131 23.923 209 146 5 2 200 60 265 5.92e-18 82.4
Msa0079310 MtrunA17_Chr3g0132671 27.222 180 96 3 2 181 97 241 1.85e-17 80.9
Msa0079310 MtrunA17_Chr5g0441011 25.306 245 149 8 2 231 61 286 3.57e-17 80.1
Msa0079310 MtrunA17_Chr2g0284031 25.225 222 151 7 2 212 79 296 1.48e-16 78.2
Msa0079310 MtrunA17_Chr1g0166101 29.775 178 89 5 6 181 76 219 1.55e-16 78.2
Msa0079310 MtrunA17_Chr1g0205421 27.473 182 95 5 2 181 60 206 2.71e-16 77.4
Msa0079310 MtrunA17_Chr7g0244521 26.203 187 101 5 2 186 60 211 2.73e-16 77.4
Msa0079310 MtrunA17_Chr5g0432471 25.654 191 97 6 2 186 60 211 3.01e-16 77.4
Msa0079310 MtrunA17_Chr3g0114511 27.957 186 89 5 6 186 84 229 4.91e-16 76.6
Msa0079310 MtrunA17_Chr4g0001331 26.455 189 102 5 2 188 68 221 7.62e-16 76.3
Msa0079310 MtrunA17_Chr2g0333821 24.378 201 115 4 2 200 62 227 1.44e-15 75.1
Msa0079310 MtrunA17_Chr2g0302431 25.943 212 110 5 2 201 68 244 1.45e-15 75.5
Msa0079310 MtrunA17_Chr5g0432491 26.203 187 102 4 2 186 71 223 1.57e-15 75.1
Msa0079310 MtrunA17_Chr4g0074111 27.225 191 98 6 2 188 66 219 1.82e-15 74.7
Msa0079310 MtrunA17_Chr1g0188031 27.869 183 97 5 6 186 73 222 2.24e-15 74.7
Msa0079310 MtrunA17_Chr6g0453671 23.153 203 145 5 6 200 71 270 6.16e-15 73.2
Msa0079310 MtrunA17_Chr7g0272841 28.319 226 121 5 2 222 121 310 8.04e-15 73.2
Msa0079310 MtrunA17_Chr4g0069301 24.390 205 143 4 6 200 78 280 1.18e-14 72.8
Msa0079310 MtrunA17_Chr5g0396361 29.358 109 77 0 2 110 187 295 1.67e-14 72.4
Msa0079310 MtrunA17_Chr7g0274941 24.468 188 97 4 5 186 67 215 3.22e-14 70.5
Msa0079310 MtrunA17_Chr5g0424501 32.192 146 90 4 2 145 241 379 3.37e-14 71.2
Msa0079310 MtrunA17_Chr5g0428981 29.375 160 110 2 27 186 834 990 4.37e-14 71.2
Msa0079310 MtrunA17_Chr4g0018201 28.750 160 111 2 27 186 830 986 5.68e-14 70.9
Msa0079310 MtrunA17_Chr3g0107051 25.238 210 144 7 1 200 68 274 8.47e-14 70.1
Msa0079310 MtrunA17_Chr1g0170551 30.400 125 84 2 2 126 54 175 8.69e-14 70.5
Msa0079310 MtrunA17_Chr3g0130151 30.986 142 94 3 1 142 293 430 9.42e-14 70.1
Msa0079310 MtrunA17_Chr3g0099951 32.283 127 84 1 2 128 63 187 1.20e-13 69.7
Msa0079310 MtrunA17_Chr3g0125381 26.066 211 133 5 9 204 7 209 1.29e-13 67.8
Msa0079310 MtrunA17_Chr5g0402601 36.111 108 56 4 1 102 421 521 2.01e-13 69.3
Msa0079310 MtrunA17_Chr5g0424581 32.192 146 90 4 2 145 174 312 2.29e-13 68.6
Msa0079310 MtrunA17_Chr5g0424651 32.192 146 90 4 2 145 370 508 4.31e-13 68.2
Msa0079310 MtrunA17_Chr4g0040141 33.000 100 67 0 2 101 176 275 4.39e-13 68.2
Msa0079310 MtrunA17_Chr4g0008561 30.159 126 82 3 2 124 66 188 4.65e-13 68.2
Msa0079310 MtrunA17_Chr3g0129721 29.851 134 76 5 2 126 72 196 8.07e-13 66.6
Msa0079310 MtrunA17_Chr8g0386981 36.893 103 59 2 2 102 458 556 1.05e-12 67.0
Msa0079310 MtrunA17_Chr1g0205931 24.895 237 133 6 2 226 108 311 1.16e-12 67.0
Msa0079310 MtrunA17_Chr1g0197721 32.407 108 71 1 1 108 98 203 1.24e-12 66.6
Msa0079310 MtrunA17_Chr8g0384301 29.861 144 93 4 1 142 348 485 2.48e-12 65.9
Msa0079310 MtrunA17_Chr8g0345801 27.368 190 95 7 2 186 62 213 3.17e-12 64.7
Msa0079310 MtrunA17_Chr2g0325851 30.814 172 109 3 2 165 602 771 3.78e-12 65.5
Msa0079310 MtrunA17_Chr3g0131861 29.000 100 71 0 2 101 144 243 4.19e-12 65.1
Msa0079310 MtrunA17_Chr2g0276831 31.707 123 77 2 12 127 66 188 4.74e-12 64.7
Msa0079310 MtrunA17_Chr4g0041201 32.331 133 85 2 2 131 592 722 6.54e-12 64.7
Msa0079310 MtrunA17_Chr4g0051261 26.374 182 98 6 2 181 51 198 6.79e-12 63.9
Msa0079310 MtrunA17_Chr1g0171451 30.337 178 106 6 2 166 459 631 7.83e-12 64.7
Msa0079310 MtrunA17_Chr6g0478601 27.711 166 106 5 27 186 182 339 8.47e-12 64.3
Msa0079310 MtrunA17_Chr1g0202831 33.858 127 77 3 2 126 461 582 1.47e-11 63.9
Msa0079310 MtrunA17_Chr6g0453711 29.907 107 75 0 2 108 157 263 1.80e-11 63.5
Msa0079310 MtrunA17_Chr6g0479211 28.161 174 96 5 13 186 114 258 2.01e-11 62.8
Msa0079310 MtrunA17_Chr1g0179331 35.385 130 77 3 2 126 600 727 2.08e-11 63.2
Msa0079310 MtrunA17_Chr2g0324461 31.000 100 69 0 2 101 188 287 2.32e-11 63.2
Msa0079310 MtrunA17_Chr5g0424531 30.556 144 95 3 2 145 65 203 2.55e-11 62.0
Msa0079310 MtrunA17_Chr4g0059751 27.568 185 92 4 5 186 147 292 3.03e-11 62.4
Msa0079310 MtrunA17_Chr2g0299781 27.749 191 116 5 14 186 173 359 3.10e-11 62.8
Msa0079310 MtrunA17_Chr3g0091421 28.800 125 85 3 9 132 67 188 3.31e-11 61.2
Msa0079310 MtrunA17_Chr4g0051191 28.966 145 98 3 1 145 212 351 5.66e-11 61.6
Msa0079310 MtrunA17_Chr8g0353621 30.097 103 70 1 9 111 65 165 6.49e-11 60.8
Msa0079310 MtrunA17_Chr2g0293491 28.571 154 99 5 2 147 51 201 9.51e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0079310 AT5G60550.1 51.866 268 59 2 2 229 161 398 1.18e-85 260
Msa0079310 AT3G45240.2 50.562 267 60 2 2 228 162 396 2.84e-81 249
Msa0079310 AT3G45240.1 50.562 267 60 2 2 228 162 396 2.84e-81 249
Msa0079310 AT3G45240.3 50.562 267 57 3 2 228 162 393 1.78e-79 244
Msa0079310 AT5G35410.2 26.512 215 148 3 2 208 59 271 2.98e-22 94.4
Msa0079310 AT4G24400.1 26.267 217 150 4 2 210 57 271 3.37e-22 94.7
Msa0079310 AT4G24400.2 26.267 217 150 4 2 210 57 271 3.58e-22 94.4
Msa0079310 AT5G35410.1 26.512 215 148 3 2 208 59 271 5.01e-22 94.4
Msa0079310 AT2G26980.5 26.939 245 145 9 2 231 62 287 1.11e-20 90.1
Msa0079310 AT2G26980.1 26.939 245 145 9 2 231 62 287 1.17e-20 89.7
Msa0079310 AT2G26980.4 26.939 245 145 9 2 231 72 297 1.66e-20 90.1
Msa0079310 AT2G26980.3 26.939 245 145 9 2 231 62 287 1.75e-20 89.7
Msa0079310 AT2G26980.2 29.167 192 90 5 2 186 62 214 1.58e-19 85.1
Msa0079310 AT3G01090.2 29.189 185 96 3 2 186 90 239 2.13e-19 87.0
Msa0079310 AT3G01090.3 29.189 185 96 3 2 186 67 216 2.42e-19 86.7
Msa0079310 AT3G01090.1 29.189 185 96 3 2 186 67 216 2.42e-19 86.7
Msa0079310 AT4G18700.1 24.901 253 170 8 2 238 74 322 4.48e-19 85.9
Msa0079310 AT1G01140.1 28.061 196 102 5 2 192 67 228 2.73e-18 83.6
Msa0079310 AT1G01140.3 28.061 196 102 5 2 192 67 228 2.82e-18 83.6
Msa0079310 AT1G01140.2 28.061 196 102 5 2 192 67 228 2.83e-18 83.6
Msa0079310 AT5G39440.1 27.602 221 143 5 2 213 67 279 2.92e-18 83.6
Msa0079310 AT1G30270.2 26.190 210 141 6 2 200 79 285 3.00e-18 83.6
Msa0079310 AT5G10930.1 28.934 197 101 5 2 195 61 221 3.11e-18 83.6
Msa0079310 AT1G30270.1 26.190 210 141 6 2 200 79 285 3.88e-18 83.2
Msa0079310 AT3G29160.3 27.568 185 99 3 2 186 68 217 5.93e-18 82.0
Msa0079310 AT2G25090.1 26.009 223 146 4 2 207 64 284 6.25e-18 82.4
Msa0079310 AT5G21326.1 26.267 217 138 6 6 207 65 274 7.82e-18 82.0
Msa0079310 AT2G30360.1 24.171 211 148 4 2 202 70 278 1.00e-17 82.0
Msa0079310 AT3G29160.1 27.568 185 99 3 2 186 68 217 1.35e-17 81.6
Msa0079310 AT3G29160.2 27.568 185 99 3 2 186 68 217 1.35e-17 81.6
Msa0079310 AT4G30960.1 27.551 196 105 3 2 195 72 232 1.54e-17 81.3
Msa0079310 AT5G57630.1 29.412 187 96 4 6 192 64 214 1.73e-17 81.3
Msa0079310 AT5G57630.2 29.412 187 96 4 6 192 64 214 1.95e-17 80.9
Msa0079310 AT1G30640.2 27.861 201 117 4 5 186 171 362 2.41e-17 80.9
Msa0079310 AT1G30640.1 27.861 201 117 4 5 186 171 362 2.41e-17 80.9
Msa0079310 AT3G23000.1 28.814 177 91 4 7 182 79 221 2.85e-17 80.5
Msa0079310 AT1G30640.3 27.861 201 117 4 5 186 78 269 2.94e-17 80.5
Msa0079310 AT5G45820.1 25.510 196 109 5 2 195 60 220 4.28e-17 80.1
Msa0079310 AT5G01810.3 34.959 123 75 3 6 126 64 183 5.71e-17 79.3
Msa0079310 AT4G14580.1 27.717 184 97 4 5 186 73 222 5.87e-17 79.7
Msa0079310 AT5G01810.1 27.751 209 138 8 2 200 60 265 6.17e-17 79.7
Msa0079310 AT5G01810.2 27.751 209 138 8 2 200 60 265 6.17e-17 79.7
Msa0079310 AT5G25110.1 25.389 193 107 4 2 192 91 248 1.41e-16 78.6
Msa0079310 AT5G45810.1 25.714 210 141 7 2 200 76 281 4.95e-16 77.0
Msa0079310 AT1G29230.1 25.701 214 136 8 2 200 122 327 1.24e-15 75.9
Msa0079310 AT5G21222.1 24.402 209 146 7 2 200 61 267 1.78e-15 75.9
Msa0079310 AT5G21222.2 24.402 209 146 7 2 200 61 267 1.78e-15 75.9
Msa0079310 AT5G21222.4 24.402 209 146 7 2 200 61 267 1.78e-15 75.9
Msa0079310 AT5G21222.3 24.402 209 146 7 2 200 61 267 1.78e-15 75.9
Msa0079310 AT5G58380.1 23.445 209 147 5 2 200 60 265 3.12e-15 74.7
Msa0079310 AT2G34180.1 27.273 187 99 5 2 186 105 256 4.43e-15 74.3
Msa0079310 AT5G62310.1 29.032 186 122 4 27 209 825 1003 5.47e-15 74.3
Msa0079310 AT3G17850.1 28.834 163 108 4 27 186 953 1110 1.29e-14 73.2
Msa0079310 AT1G48490.3 29.814 161 103 4 27 186 899 1050 1.38e-14 73.2
Msa0079310 AT1G48490.2 29.814 161 103 4 27 186 899 1050 1.38e-14 73.2
Msa0079310 AT1G48490.1 29.814 161 103 4 27 186 899 1050 1.38e-14 73.2
Msa0079310 AT1G48490.4 29.814 161 103 4 27 186 900 1051 1.39e-14 73.2
Msa0079310 AT1G09000.2 31.579 152 96 3 2 147 122 271 2.47e-14 72.4
Msa0079310 AT1G45160.2 29.375 160 107 2 27 186 741 894 2.50e-14 72.4
Msa0079310 AT1G45160.1 30.000 160 106 2 27 186 741 894 3.12e-14 72.0
Msa0079310 AT1G09000.1 29.885 174 108 5 2 164 122 292 3.76e-14 71.6
Msa0079310 AT5G04510.2 33.962 106 68 1 1 106 91 194 4.60e-14 71.2
Msa0079310 AT5G04510.3 33.333 108 70 1 1 108 91 196 4.97e-14 70.5
Msa0079310 AT5G04510.1 33.962 106 68 1 1 106 91 194 6.03e-14 70.9
Msa0079310 AT1G48260.1 26.147 218 113 6 2 212 59 235 6.03e-14 70.9
Msa0079310 AT2G31010.1 30.814 172 109 3 2 165 564 733 6.58e-14 71.2
Msa0079310 AT2G31010.2 30.814 172 109 3 2 165 564 733 6.58e-14 71.2
Msa0079310 AT3G10540.1 34.906 106 67 1 1 106 92 195 1.13e-13 70.1
Msa0079310 AT1G30270.3 26.374 182 122 5 30 200 8 188 2.55e-13 68.9
Msa0079310 AT2G37840.1 30.159 126 82 3 2 124 59 181 3.79e-13 68.9
Msa0079310 AT2G38490.1 27.322 183 92 5 2 180 76 221 3.83e-13 68.6
Msa0079310 AT1G51660.1 36.800 125 73 3 2 126 125 243 4.80e-13 68.2
Msa0079310 AT1G54960.1 30.921 152 97 3 2 147 121 270 4.85e-13 68.6
Msa0079310 AT1G54960.2 30.921 152 97 3 2 147 121 270 4.85e-13 68.6
Msa0079310 AT3G17510.1 26.457 223 116 6 2 217 68 249 4.86e-13 68.2
Msa0079310 AT5G58950.1 27.586 203 97 7 2 196 258 418 5.31e-13 68.2
Msa0079310 AT1G49180.2 33.613 119 73 3 11 126 63 178 1.36e-12 66.6
Msa0079310 AT1G03740.2 24.432 176 102 2 2 177 260 404 1.44e-12 67.0
Msa0079310 AT1G03740.1 24.432 176 102 2 2 177 260 404 1.49e-12 67.0
Msa0079310 AT2G45490.1 23.963 217 141 5 5 207 73 279 1.54e-12 66.2
Msa0079310 AT1G63700.1 33.858 127 77 3 2 126 450 571 1.57e-12 67.0
Msa0079310 AT1G63700.2 33.858 127 77 3 2 126 450 571 1.57e-12 67.0
Msa0079310 AT1G49180.1 33.613 119 73 3 11 126 63 178 1.63e-12 66.6
Msa0079310 AT1G73690.1 25.532 188 92 4 2 182 58 204 2.08e-12 66.2
Msa0079310 AT2G20470.3 27.168 173 106 4 27 186 195 360 3.32e-12 65.9
Msa0079310 AT2G20470.2 27.168 173 106 4 27 186 195 360 3.41e-12 65.9
Msa0079310 AT2G20470.1 27.168 173 106 4 27 186 195 360 3.41e-12 65.9
Msa0079310 AT1G50240.3 29.600 125 85 2 2 126 53 174 3.56e-12 66.2
Msa0079310 AT1G50240.2 29.600 125 85 2 2 126 53 174 3.56e-12 66.2
Msa0079310 AT1G71530.4 29.358 109 77 0 2 110 194 302 4.24e-12 65.1
Msa0079310 AT5G57630.3 26.875 160 83 3 33 192 1 126 4.99e-12 65.1
Msa0079310 AT5G44290.7 27.711 166 105 3 2 166 184 335 5.73e-12 65.1
Msa0079310 AT1G71530.3 29.358 109 77 0 2 110 194 302 5.84e-12 65.1
Msa0079310 AT5G44290.6 27.711 166 105 3 2 166 184 335 6.43e-12 65.1
Msa0079310 AT4G14350.2 28.324 173 102 6 29 186 192 357 7.54e-12 64.7
Msa0079310 AT4G14350.1 28.324 173 102 6 29 186 192 357 7.54e-12 64.7
Msa0079310 AT4G14350.4 28.324 173 102 6 29 186 192 357 7.54e-12 64.7
Msa0079310 AT4G14350.3 28.723 188 110 7 14 186 179 357 8.19e-12 64.7
Msa0079310 AT1G71530.2 29.358 109 77 0 2 110 194 302 8.49e-12 64.7
Msa0079310 AT5G66850.2 35.185 108 57 4 1 102 395 495 1.01e-11 64.7
Msa0079310 AT5G44290.2 27.711 166 105 3 2 166 184 335 1.13e-11 64.3
Msa0079310 AT5G44290.5 27.711 166 105 3 2 166 184 335 1.13e-11 64.3
Msa0079310 AT5G44290.4 27.711 166 105 3 2 166 184 335 1.13e-11 64.3
Msa0079310 AT5G44290.1 27.711 166 105 3 2 166 184 335 1.13e-11 64.3
Msa0079310 AT5G44290.3 27.711 166 105 3 2 166 184 335 1.13e-11 64.3
Msa0079310 AT3G06030.1 24.554 224 152 7 2 211 121 341 1.14e-11 64.3
Msa0079310 AT5G66850.1 35.185 108 57 4 1 102 395 495 1.18e-11 64.3
Msa0079310 AT1G71530.1 29.358 109 77 0 2 110 194 302 1.93e-11 63.9
Msa0079310 AT3G21220.2 29.545 176 90 4 2 177 116 257 1.97e-11 63.2
Msa0079310 AT3G21220.1 29.545 176 90 4 2 177 116 257 1.97e-11 63.2
Msa0079310 AT5G07070.1 25.134 187 103 5 2 186 60 211 1.99e-11 63.5
Msa0079310 AT4G33080.2 28.947 190 115 6 14 186 154 340 2.65e-11 63.2
Msa0079310 AT4G33080.1 28.947 190 115 6 14 186 154 340 2.94e-11 63.2
Msa0079310 AT5G57565.5 31.959 97 64 2 31 127 34 128 2.99e-11 60.1
Msa0079310 AT5G57565.1 31.959 97 64 2 31 127 34 128 2.99e-11 60.1
Msa0079310 AT3G53930.1 28.125 128 86 3 2 126 67 191 4.57e-11 62.8
Msa0079310 AT3G53930.2 28.125 128 86 3 2 126 67 191 4.66e-11 62.8
Msa0079310 AT1G78290.3 29.101 189 83 8 7 186 53 199 4.85e-11 62.0
Msa0079310 AT1G78290.2 29.101 189 83 8 7 186 53 199 4.85e-11 62.0
Msa0079310 AT5G39420.1 27.103 107 78 0 2 108 152 258 6.16e-11 62.4
Msa0079310 AT2G17700.1 25.581 172 117 5 1 165 330 497 8.06e-11 62.0
Msa0079310 AT2G19400.1 27.749 191 116 7 14 186 165 351 8.65e-11 61.6
Msa0079310 AT5G03730.2 33.846 130 79 3 2 126 596 723 8.77e-11 62.0
Msa0079310 AT5G03730.1 33.846 130 79 3 2 126 596 723 8.77e-11 62.0
Msa0079310 AT1G53050.2 33.000 100 67 0 2 101 181 280 8.89e-11 61.6
Msa0079310 AT1G53050.1 33.000 100 67 0 2 101 181 280 8.89e-11 61.6
Msa0079310 AT3G50310.1 33.600 125 70 4 50 161 102 226 9.83e-11 61.2

Find 50 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTTTGTACTGTATGATAT+TGG 0.249189 1_2:+57119863 Msa0079310:CDS
ATGTAGAAGTTATCCAATTC+TGG 0.313855 1_2:-57118695 None:intergenic
GCAGCAGATAGCTGGGTTAT+TGG 0.315257 1_2:+57119961 Msa0079310:CDS
TTATGCTTGTAAAATGCATT+TGG 0.329144 1_2:+57119736 Msa0079310:CDS
CGAGTAATCAACAGATTATC+AGG 0.338053 1_2:-57119211 None:intergenic
TTGAATATGTGGAAGACAAA+TGG 0.367242 1_2:+57118837 Msa0079310:CDS
CAATTCCTTTGTACCTGTGC+TGG 0.371187 1_2:+57119995 Msa0079310:CDS
TATGCTTGTAAAATGCATTT+GGG 0.380506 1_2:+57119737 Msa0079310:CDS
CTGATGTCGCAGCAGATAGC+TGG 0.389352 1_2:+57119953 Msa0079310:CDS
AGCTGGGTTATTGGAAATGA+TGG 0.391248 1_2:+57119970 Msa0079310:CDS
TACTTGCGTGATATAGTTTG+TGG 0.407512 1_2:+57118914 Msa0079310:CDS
TCAATCAGATTGACTATGTT+AGG 0.413043 1_2:-57118659 None:intergenic
CAGCACAGGTACAAAGGAAT+TGG 0.414844 1_2:-57119994 None:intergenic
ACTTTGTACTGTATGATATT+GGG 0.418226 1_2:+57119864 Msa0079310:CDS
CATTCAGATGCAGTGAAAAC+AGG 0.419774 1_2:-57119690 None:intergenic
GGTGATTGATGACCCAGAAT+TGG 0.428905 1_2:+57118682 Msa0079310:CDS
GCAGTGAAAACAGGAGTTCC+AGG 0.429470 1_2:-57119681 None:intergenic
TGAATATGTGGAAGACAAAT+GGG 0.441978 1_2:+57118838 Msa0079310:CDS
TGTACCTGTGCTGGTGCAAA+AGG 0.464843 1_2:+57120004 Msa0079310:CDS
AAATGGGTTTGTGAAGGTTC+AGG 0.466210 1_2:+57118854 Msa0079310:CDS
GTCATGGTACAGTGAAGATA+AGG 0.482008 1_2:+57119233 Msa0079310:CDS
TGTAGAAGTTATCCAATTCT+GGG 0.482254 1_2:-57118694 None:intergenic
CAATACAGTACTTGAATATG+TGG 0.488989 1_2:+57118826 Msa0079310:intron
TCATGGTACAGTGAAGATAA+GGG 0.505025 1_2:+57119234 Msa0079310:CDS
AAGGGATTTCAGTGTCAGCC+AGG 0.505554 1_2:+57119252 Msa0079310:CDS
GTGGTAAAGCTGCGGACACA+TGG 0.519090 1_2:+57119829 Msa0079310:CDS
TGAATAAAATCAGTCAGTAT+AGG 0.525673 1_2:-57120079 None:intergenic
TATAGGTCAACGAAGCATCT+TGG 0.527956 1_2:-57120062 None:intergenic
GATATGCTTCGACGATCACC+TGG 0.533902 1_2:+57119663 Msa0079310:CDS
GAATTGGATAACTTCTACAT+GGG 0.536456 1_2:+57118698 Msa0079310:CDS
GTTGCATTACCTCACAAGCC+TGG 0.550563 1_2:-57119270 None:intergenic
TAACATAGTCAATCTGATTG+AGG 0.550984 1_2:+57118661 Msa0079310:CDS
CAGTGTCAGCCAGGCTTGTG+AGG 0.561168 1_2:+57119261 Msa0079310:CDS
AAAGAAATATTACATGAGCA+TGG 0.564906 1_2:-57118949 None:intergenic
TGATGTCGCAGCAGATAGCT+GGG 0.568027 1_2:+57119954 Msa0079310:CDS
AGAATTGGATAACTTCTACA+TGG 0.571002 1_2:+57118697 Msa0079310:CDS
CCTAGCAGTCTCTTCACGTA+AGG 0.574911 1_2:-57118888 None:intergenic
GCTGGGTTATTGGAAATGAT+GGG 0.595401 1_2:+57119971 Msa0079310:CDS
GCTGCGGACACATGGGCTGT+AGG 0.596139 1_2:+57119837 Msa0079310:CDS
TTGCACCAGCACAGGTACAA+AGG 0.598450 1_2:-57120000 None:intergenic
CCTTACGTGAAGAGACTGCT+AGG 0.601669 1_2:+57118888 Msa0079310:CDS
AATCTGTTGATTACTCGTCA+TGG 0.618110 1_2:+57119217 Msa0079310:CDS
CAAAAGGAAGAACTTGGTGA+AGG 0.642700 1_2:+57120020 Msa0079310:CDS
GTAACGCAGAATATAGTACA+TGG 0.644939 1_2:+57119178 Msa0079310:intron
TGGTAAAGCTGCGGACACAT+GGG 0.652835 1_2:+57119830 Msa0079310:CDS
GAAGACAAATGGGTTTGTGA+AGG 0.660526 1_2:+57118848 Msa0079310:CDS
CTGGTGCAAAAGGAAGAACT+TGG 0.662500 1_2:+57120014 Msa0079310:CDS
TAATGATGTCTACGAAACGC+AGG 0.664837 1_2:+57119760 Msa0079310:CDS
TACCTACAGTGGTAAAGCTG+CGG 0.678882 1_2:+57119821 Msa0079310:CDS
GTCCGCAGCTTTACCACTGT+AGG 0.742193 1_2:-57119823 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTTTTTGTATTTTATC+CGG - chr1_2:57119052-57119071 None:intergenic 10.0%
!! AAATACTTAAAATATAACAA+AGG + chr1_2:57119315-57119334 Msa0079310:intron 10.0%
!!! TTTATTTTTTGTATTTTATC+CGG - chr1_2:57119052-57119071 None:intergenic 10.0%
!! AAATACTTAAAATATAACAA+AGG + chr1_2:57119315-57119334 Msa0079310:intron 10.0%
!! AAAAAAAGAAAAGCTAAATT+AGG - chr1_2:57118780-57118799 None:intergenic 15.0%
!! AAAAAAAGAAAAGCTAAATT+AGG - chr1_2:57118780-57118799 None:intergenic 15.0%
!! TGATAAAGAAAATAAGTGTA+TGG + chr1_2:57118562-57118581 Msa0079310:intron 20.0%
!!! TATGGTAGATTTTAATTTGA+AGG + chr1_2:57118580-57118599 Msa0079310:intron 20.0%
!! AAGTATTTAAATTACCATTC+AGG - chr1_2:57119303-57119322 None:intergenic 20.0%
!! AAATAAGGAATATGATTACT+TGG + chr1_2:57119434-57119453 Msa0079310:intron 20.0%
!!! TACCATTTTTTCTTTTTGTT+TGG + chr1_2:57119540-57119559 Msa0079310:intron 20.0%
!! TACCAAACAAAAAGAAAAAA+TGG - chr1_2:57119545-57119564 None:intergenic 20.0%
!!! GTATTTGTTAATGTGTTTTT+AGG + chr1_2:57119795-57119814 Msa0079310:CDS 20.0%
!! TGATAAAGAAAATAAGTGTA+TGG + chr1_2:57118562-57118581 Msa0079310:intron 20.0%
!!! TATGGTAGATTTTAATTTGA+AGG + chr1_2:57118580-57118599 Msa0079310:intron 20.0%
!! AAGTATTTAAATTACCATTC+AGG - chr1_2:57119303-57119322 None:intergenic 20.0%
!! AAATAAGGAATATGATTACT+TGG + chr1_2:57119434-57119453 Msa0079310:intron 20.0%
!!! TACCATTTTTTCTTTTTGTT+TGG + chr1_2:57119540-57119559 Msa0079310:intron 20.0%
!! TACCAAACAAAAAGAAAAAA+TGG - chr1_2:57119545-57119564 None:intergenic 20.0%
!!! GTATTTGTTAATGTGTTTTT+AGG + chr1_2:57119795-57119814 Msa0079310:CDS 20.0%
!! TATGAAAATGCTTTCTTTTC+AGG + chr1_2:57118610-57118629 Msa0079310:intron 25.0%
!!! CTAGTTTTTTCTTTCTTTCT+TGG + chr1_2:57118730-57118749 Msa0079310:intron 25.0%
!!! AGCTTTTCTTTTTTTGTATG+AGG + chr1_2:57118785-57118804 Msa0079310:intron 25.0%
! AAAGAAATATTACATGAGCA+TGG - chr1_2:57118952-57118971 None:intergenic 25.0%
! CAAATGTATCATGTAAAGAT+TGG - chr1_2:57118976-57118995 None:intergenic 25.0%
! TTGTATGTTATATATTCTGC+CGG + chr1_2:57119030-57119049 Msa0079310:intron 25.0%
! AACATGATTAAACTATTCCA+AGG - chr1_2:57119130-57119149 None:intergenic 25.0%
! CACACAATGTTTGAAAAATA+AGG + chr1_2:57119419-57119438 Msa0079310:intron 25.0%
!! ATGGAACTATTAAAGTTGAT+TGG + chr1_2:57119462-57119481 Msa0079310:intron 25.0%
!! TTAAGTCAATGTTTAGTTTC+AGG - chr1_2:57119503-57119522 None:intergenic 25.0%
!! ATTTTATCATAAACTCTGCA+TGG - chr1_2:57119592-57119611 None:intergenic 25.0%
! TTATGCTTGTAAAATGCATT+TGG + chr1_2:57119736-57119755 Msa0079310:CDS 25.0%
! TATGCTTGTAAAATGCATTT+GGG + chr1_2:57119737-57119756 Msa0079310:CDS 25.0%
! TACTTTGTACTGTATGATAT+TGG + chr1_2:57119863-57119882 Msa0079310:CDS 25.0%
! ACTTTGTACTGTATGATATT+GGG + chr1_2:57119864-57119883 Msa0079310:CDS 25.0%
!! TATGAAAATGCTTTCTTTTC+AGG + chr1_2:57118610-57118629 Msa0079310:intron 25.0%
!!! CTAGTTTTTTCTTTCTTTCT+TGG + chr1_2:57118730-57118749 Msa0079310:intron 25.0%
!!! AGCTTTTCTTTTTTTGTATG+AGG + chr1_2:57118785-57118804 Msa0079310:intron 25.0%
! AAAGAAATATTACATGAGCA+TGG - chr1_2:57118952-57118971 None:intergenic 25.0%
! CAAATGTATCATGTAAAGAT+TGG - chr1_2:57118976-57118995 None:intergenic 25.0%
! TTGTATGTTATATATTCTGC+CGG + chr1_2:57119030-57119049 Msa0079310:intron 25.0%
! AACATGATTAAACTATTCCA+AGG - chr1_2:57119130-57119149 None:intergenic 25.0%
! CACACAATGTTTGAAAAATA+AGG + chr1_2:57119419-57119438 Msa0079310:intron 25.0%
!! ATGGAACTATTAAAGTTGAT+TGG + chr1_2:57119462-57119481 Msa0079310:intron 25.0%
!! TTAAGTCAATGTTTAGTTTC+AGG - chr1_2:57119503-57119522 None:intergenic 25.0%
!! ATTTTATCATAAACTCTGCA+TGG - chr1_2:57119592-57119611 None:intergenic 25.0%
! TTATGCTTGTAAAATGCATT+TGG + chr1_2:57119736-57119755 Msa0079310:CDS 25.0%
! TATGCTTGTAAAATGCATTT+GGG + chr1_2:57119737-57119756 Msa0079310:CDS 25.0%
! TACTTTGTACTGTATGATAT+TGG + chr1_2:57119863-57119882 Msa0079310:CDS 25.0%
! ACTTTGTACTGTATGATATT+GGG + chr1_2:57119864-57119883 Msa0079310:CDS 25.0%
TCAATCAGATTGACTATGTT+AGG - chr1_2:57118662-57118681 None:intergenic 30.0%
TAACATAGTCAATCTGATTG+AGG + chr1_2:57118661-57118680 Msa0079310:CDS 30.0%
TGTAGAAGTTATCCAATTCT+GGG - chr1_2:57118697-57118716 None:intergenic 30.0%
ATGTAGAAGTTATCCAATTC+TGG - chr1_2:57118698-57118717 None:intergenic 30.0%
AGAATTGGATAACTTCTACA+TGG + chr1_2:57118697-57118716 Msa0079310:CDS 30.0%
GAATTGGATAACTTCTACAT+GGG + chr1_2:57118698-57118717 Msa0079310:CDS 30.0%
CAATACAGTACTTGAATATG+TGG + chr1_2:57118826-57118845 Msa0079310:intron 30.0%
TTGAATATGTGGAAGACAAA+TGG + chr1_2:57118837-57118856 Msa0079310:CDS 30.0%
TGAATATGTGGAAGACAAAT+GGG + chr1_2:57118838-57118857 Msa0079310:CDS 30.0%
! ACACAACTTTTGCATATCAA+TGG + chr1_2:57119003-57119022 Msa0079310:intron 30.0%
ACAATATCATCCAAGTAAAG+TGG - chr1_2:57119343-57119362 None:intergenic 30.0%
AGAAAAAGATGTATCCTAAG+CGG - chr1_2:57119377-57119396 None:intergenic 30.0%
ATATGATTACTTGGACGATA+TGG + chr1_2:57119443-57119462 Msa0079310:intron 30.0%
GACTTAATATGAAGCCTATA+TGG + chr1_2:57119617-57119636 Msa0079310:intron 30.0%
CTGCAAAATGAAAACCATAT+AGG - chr1_2:57119634-57119653 None:intergenic 30.0%
! CTATATGGTTTTCATTTTGC+AGG + chr1_2:57119632-57119651 Msa0079310:intron 30.0%
! ACTGCATCTGAATGTATTTT+AGG + chr1_2:57119699-57119718 Msa0079310:CDS 30.0%
!! CATCTGAATGTATTTTAGGT+TGG + chr1_2:57119703-57119722 Msa0079310:CDS 30.0%
!!! TCAACGTCATCTTTTGTTTT+GGG - chr1_2:57119933-57119952 None:intergenic 30.0%
TCAATCAGATTGACTATGTT+AGG - chr1_2:57118662-57118681 None:intergenic 30.0%
TAACATAGTCAATCTGATTG+AGG + chr1_2:57118661-57118680 Msa0079310:CDS 30.0%
TGTAGAAGTTATCCAATTCT+GGG - chr1_2:57118697-57118716 None:intergenic 30.0%
ATGTAGAAGTTATCCAATTC+TGG - chr1_2:57118698-57118717 None:intergenic 30.0%
AGAATTGGATAACTTCTACA+TGG + chr1_2:57118697-57118716 Msa0079310:CDS 30.0%
GAATTGGATAACTTCTACAT+GGG + chr1_2:57118698-57118717 Msa0079310:CDS 30.0%
CAATACAGTACTTGAATATG+TGG + chr1_2:57118826-57118845 Msa0079310:intron 30.0%
TTGAATATGTGGAAGACAAA+TGG + chr1_2:57118837-57118856 Msa0079310:CDS 30.0%
TGAATATGTGGAAGACAAAT+GGG + chr1_2:57118838-57118857 Msa0079310:CDS 30.0%
! ACACAACTTTTGCATATCAA+TGG + chr1_2:57119003-57119022 Msa0079310:intron 30.0%
ACAATATCATCCAAGTAAAG+TGG - chr1_2:57119343-57119362 None:intergenic 30.0%
AGAAAAAGATGTATCCTAAG+CGG - chr1_2:57119377-57119396 None:intergenic 30.0%
ATATGATTACTTGGACGATA+TGG + chr1_2:57119443-57119462 Msa0079310:intron 30.0%
GACTTAATATGAAGCCTATA+TGG + chr1_2:57119617-57119636 Msa0079310:intron 30.0%
CTGCAAAATGAAAACCATAT+AGG - chr1_2:57119634-57119653 None:intergenic 30.0%
! CTATATGGTTTTCATTTTGC+AGG + chr1_2:57119632-57119651 Msa0079310:intron 30.0%
! ACTGCATCTGAATGTATTTT+AGG + chr1_2:57119699-57119718 Msa0079310:CDS 30.0%
!! CATCTGAATGTATTTTAGGT+TGG + chr1_2:57119703-57119722 Msa0079310:CDS 30.0%
!!! TCAACGTCATCTTTTGTTTT+GGG - chr1_2:57119933-57119952 None:intergenic 30.0%
TACTTGCGTGATATAGTTTG+TGG + chr1_2:57118914-57118933 Msa0079310:CDS 35.0%
!! TTGAAGCATCGTACTGTTTA+TGG + chr1_2:57119075-57119094 Msa0079310:intron 35.0%
GTAACGCAGAATATAGTACA+TGG + chr1_2:57119178-57119197 Msa0079310:intron 35.0%
CGAGTAATCAACAGATTATC+AGG - chr1_2:57119214-57119233 None:intergenic 35.0%
! AATCTGTTGATTACTCGTCA+TGG + chr1_2:57119217-57119236 Msa0079310:CDS 35.0%
TCATGGTACAGTGAAGATAA+GGG + chr1_2:57119234-57119253 Msa0079310:CDS 35.0%
!! AACAAAGGTACCACTTTACT+TGG + chr1_2:57119330-57119349 Msa0079310:intron 35.0%
!!! TTTTTAGGTGTTACCTACAG+TGG + chr1_2:57119810-57119829 Msa0079310:CDS 35.0%
!! GTCAACGTCATCTTTTGTTT+TGG - chr1_2:57119934-57119953 None:intergenic 35.0%
TACTTGCGTGATATAGTTTG+TGG + chr1_2:57118914-57118933 Msa0079310:CDS 35.0%
!! TTGAAGCATCGTACTGTTTA+TGG + chr1_2:57119075-57119094 Msa0079310:intron 35.0%
GTAACGCAGAATATAGTACA+TGG + chr1_2:57119178-57119197 Msa0079310:intron 35.0%
CGAGTAATCAACAGATTATC+AGG - chr1_2:57119214-57119233 None:intergenic 35.0%
! AATCTGTTGATTACTCGTCA+TGG + chr1_2:57119217-57119236 Msa0079310:CDS 35.0%
TCATGGTACAGTGAAGATAA+GGG + chr1_2:57119234-57119253 Msa0079310:CDS 35.0%
!! AACAAAGGTACCACTTTACT+TGG + chr1_2:57119330-57119349 Msa0079310:intron 35.0%
!!! TTTTTAGGTGTTACCTACAG+TGG + chr1_2:57119810-57119829 Msa0079310:CDS 35.0%
!! GTCAACGTCATCTTTTGTTT+TGG - chr1_2:57119934-57119953 None:intergenic 35.0%
! GAAGACAAATGGGTTTGTGA+AGG + chr1_2:57118848-57118867 Msa0079310:CDS 40.0%
! AAATGGGTTTGTGAAGGTTC+AGG + chr1_2:57118854-57118873 Msa0079310:CDS 40.0%
CTCTTACTCGTTAAATGCCT+TGG + chr1_2:57119110-57119129 Msa0079310:intron 40.0%
GTCATGGTACAGTGAAGATA+AGG + chr1_2:57119233-57119252 Msa0079310:CDS 40.0%
TCTGCATGGAGTATGTCAAA+GGG - chr1_2:57119578-57119597 None:intergenic 40.0%
CATTCAGATGCAGTGAAAAC+AGG - chr1_2:57119693-57119712 None:intergenic 40.0%
TAATGATGTCTACGAAACGC+AGG + chr1_2:57119760-57119779 Msa0079310:CDS 40.0%
! TTGGGTGAATACCCTTTTCT+TGG + chr1_2:57119882-57119901 Msa0079310:intron 40.0%
AGCTGGGTTATTGGAAATGA+TGG + chr1_2:57119970-57119989 Msa0079310:CDS 40.0%
GCTGGGTTATTGGAAATGAT+GGG + chr1_2:57119971-57119990 Msa0079310:CDS 40.0%
! CAAAAGGAAGAACTTGGTGA+AGG + chr1_2:57120020-57120039 Msa0079310:CDS 40.0%
! TATAGGTCAACGAAGCATCT+TGG - chr1_2:57120065-57120084 None:intergenic 40.0%
! GAAGACAAATGGGTTTGTGA+AGG + chr1_2:57118848-57118867 Msa0079310:CDS 40.0%
! AAATGGGTTTGTGAAGGTTC+AGG + chr1_2:57118854-57118873 Msa0079310:CDS 40.0%
CTCTTACTCGTTAAATGCCT+TGG + chr1_2:57119110-57119129 Msa0079310:intron 40.0%
GTCATGGTACAGTGAAGATA+AGG + chr1_2:57119233-57119252 Msa0079310:CDS 40.0%
TCTGCATGGAGTATGTCAAA+GGG - chr1_2:57119578-57119597 None:intergenic 40.0%
CATTCAGATGCAGTGAAAAC+AGG - chr1_2:57119693-57119712 None:intergenic 40.0%
TAATGATGTCTACGAAACGC+AGG + chr1_2:57119760-57119779 Msa0079310:CDS 40.0%
! TTGGGTGAATACCCTTTTCT+TGG + chr1_2:57119882-57119901 Msa0079310:intron 40.0%
AGCTGGGTTATTGGAAATGA+TGG + chr1_2:57119970-57119989 Msa0079310:CDS 40.0%
GCTGGGTTATTGGAAATGAT+GGG + chr1_2:57119971-57119990 Msa0079310:CDS 40.0%
! CAAAAGGAAGAACTTGGTGA+AGG + chr1_2:57120020-57120039 Msa0079310:CDS 40.0%
! TATAGGTCAACGAAGCATCT+TGG - chr1_2:57120065-57120084 None:intergenic 40.0%
! GGTGATTGATGACCCAGAAT+TGG + chr1_2:57118682-57118701 Msa0079310:CDS 45.0%
ATGCAACTACTGAGCCTGAA+TGG + chr1_2:57119286-57119305 Msa0079310:intron 45.0%
! TGTATCTTCAACTGCCGCTT+AGG + chr1_2:57119360-57119379 Msa0079310:intron 45.0%
TGCATGGAGTATGTCAAAGG+GGG - chr1_2:57119576-57119595 None:intergenic 45.0%
CTGCATGGAGTATGTCAAAG+GGG - chr1_2:57119577-57119596 None:intergenic 45.0%
CTCTGCATGGAGTATGTCAA+AGG - chr1_2:57119579-57119598 None:intergenic 45.0%
TACCTACAGTGGTAAAGCTG+CGG + chr1_2:57119821-57119840 Msa0079310:CDS 45.0%
!! ACCCTTTTCTTGGTGACACA+TGG + chr1_2:57119892-57119911 Msa0079310:intron 45.0%
CCCATGTGTCACCAAGAAAA+GGG - chr1_2:57119896-57119915 None:intergenic 45.0%
!! CCCTTTTCTTGGTGACACAT+GGG + chr1_2:57119893-57119912 Msa0079310:intron 45.0%
CAGCACAGGTACAAAGGAAT+TGG - chr1_2:57119997-57120016 None:intergenic 45.0%
CAATTCCTTTGTACCTGTGC+TGG + chr1_2:57119995-57120014 Msa0079310:CDS 45.0%
CTGGTGCAAAAGGAAGAACT+TGG + chr1_2:57120014-57120033 Msa0079310:CDS 45.0%
! GGTGATTGATGACCCAGAAT+TGG + chr1_2:57118682-57118701 Msa0079310:CDS 45.0%
ATGCAACTACTGAGCCTGAA+TGG + chr1_2:57119286-57119305 Msa0079310:intron 45.0%
! TGTATCTTCAACTGCCGCTT+AGG + chr1_2:57119360-57119379 Msa0079310:intron 45.0%
TGCATGGAGTATGTCAAAGG+GGG - chr1_2:57119576-57119595 None:intergenic 45.0%
CTGCATGGAGTATGTCAAAG+GGG - chr1_2:57119577-57119596 None:intergenic 45.0%
CTCTGCATGGAGTATGTCAA+AGG - chr1_2:57119579-57119598 None:intergenic 45.0%
TACCTACAGTGGTAAAGCTG+CGG + chr1_2:57119821-57119840 Msa0079310:CDS 45.0%
!! ACCCTTTTCTTGGTGACACA+TGG + chr1_2:57119892-57119911 Msa0079310:intron 45.0%
CCCATGTGTCACCAAGAAAA+GGG - chr1_2:57119896-57119915 None:intergenic 45.0%
!! CCCTTTTCTTGGTGACACAT+GGG + chr1_2:57119893-57119912 Msa0079310:intron 45.0%
CAGCACAGGTACAAAGGAAT+TGG - chr1_2:57119997-57120016 None:intergenic 45.0%
CAATTCCTTTGTACCTGTGC+TGG + chr1_2:57119995-57120014 Msa0079310:CDS 45.0%
CTGGTGCAAAAGGAAGAACT+TGG + chr1_2:57120014-57120033 Msa0079310:CDS 45.0%
CCTAGCAGTCTCTTCACGTA+AGG - chr1_2:57118891-57118910 None:intergenic 50.0%
CCTTACGTGAAGAGACTGCT+AGG + chr1_2:57118888-57118907 Msa0079310:CDS 50.0%
AAGGGATTTCAGTGTCAGCC+AGG + chr1_2:57119252-57119271 Msa0079310:CDS 50.0%
GTTGCATTACCTCACAAGCC+TGG - chr1_2:57119273-57119292 None:intergenic 50.0%
ATGGAGTATGTCAAAGGGGG+TGG - chr1_2:57119573-57119592 None:intergenic 50.0%
GATATGCTTCGACGATCACC+TGG + chr1_2:57119663-57119682 Msa0079310:CDS 50.0%
GCAGTGAAAACAGGAGTTCC+AGG - chr1_2:57119684-57119703 None:intergenic 50.0%
TGGTAAAGCTGCGGACACAT+GGG + chr1_2:57119830-57119849 Msa0079310:CDS 50.0%
GCCCATGTGTCACCAAGAAA+AGG - chr1_2:57119897-57119916 None:intergenic 50.0%
TGATGTCGCAGCAGATAGCT+GGG + chr1_2:57119954-57119973 Msa0079310:CDS 50.0%
GCAGCAGATAGCTGGGTTAT+TGG + chr1_2:57119961-57119980 Msa0079310:CDS 50.0%
TTGCACCAGCACAGGTACAA+AGG - chr1_2:57120003-57120022 None:intergenic 50.0%
! TGTACCTGTGCTGGTGCAAA+AGG + chr1_2:57120004-57120023 Msa0079310:CDS 50.0%
! TCTTCCTTTTGCACCAGCAC+AGG - chr1_2:57120011-57120030 None:intergenic 50.0%
CCTAGCAGTCTCTTCACGTA+AGG - chr1_2:57118891-57118910 None:intergenic 50.0%
CCTTACGTGAAGAGACTGCT+AGG + chr1_2:57118888-57118907 Msa0079310:CDS 50.0%
AAGGGATTTCAGTGTCAGCC+AGG + chr1_2:57119252-57119271 Msa0079310:CDS 50.0%
GTTGCATTACCTCACAAGCC+TGG - chr1_2:57119273-57119292 None:intergenic 50.0%
ATGGAGTATGTCAAAGGGGG+TGG - chr1_2:57119573-57119592 None:intergenic 50.0%
GATATGCTTCGACGATCACC+TGG + chr1_2:57119663-57119682 Msa0079310:CDS 50.0%
GCAGTGAAAACAGGAGTTCC+AGG - chr1_2:57119684-57119703 None:intergenic 50.0%
TGGTAAAGCTGCGGACACAT+GGG + chr1_2:57119830-57119849 Msa0079310:CDS 50.0%
GCCCATGTGTCACCAAGAAA+AGG - chr1_2:57119897-57119916 None:intergenic 50.0%
TGATGTCGCAGCAGATAGCT+GGG + chr1_2:57119954-57119973 Msa0079310:CDS 50.0%
GCAGCAGATAGCTGGGTTAT+TGG + chr1_2:57119961-57119980 Msa0079310:CDS 50.0%
TTGCACCAGCACAGGTACAA+AGG - chr1_2:57120003-57120022 None:intergenic 50.0%
! TGTACCTGTGCTGGTGCAAA+AGG + chr1_2:57120004-57120023 Msa0079310:CDS 50.0%
! TCTTCCTTTTGCACCAGCAC+AGG - chr1_2:57120011-57120030 None:intergenic 50.0%
GTCCGCAGCTTTACCACTGT+AGG - chr1_2:57119826-57119845 None:intergenic 55.0%
GTGGTAAAGCTGCGGACACA+TGG + chr1_2:57119829-57119848 Msa0079310:CDS 55.0%
CTGATGTCGCAGCAGATAGC+TGG + chr1_2:57119953-57119972 Msa0079310:CDS 55.0%
GTCCGCAGCTTTACCACTGT+AGG - chr1_2:57119826-57119845 None:intergenic 55.0%
GTGGTAAAGCTGCGGACACA+TGG + chr1_2:57119829-57119848 Msa0079310:CDS 55.0%
CTGATGTCGCAGCAGATAGC+TGG + chr1_2:57119953-57119972 Msa0079310:CDS 55.0%
CAGTGTCAGCCAGGCTTGTG+AGG + chr1_2:57119261-57119280 Msa0079310:CDS 60.0%
CAGTGTCAGCCAGGCTTGTG+AGG + chr1_2:57119261-57119280 Msa0079310:CDS 60.0%
! GCTGCGGACACATGGGCTGT+AGG + chr1_2:57119837-57119856 Msa0079310:CDS 65.0%
! GCTGCGGACACATGGGCTGT+AGG + chr1_2:57119837-57119856 Msa0079310:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 57118555 57120092 57118555 ID=Msa0079310;Name=Msa0079310
chr1_2 mRNA 57118555 57120092 57118555 ID=Msa0079310-mRNA-1;Parent=Msa0079310;Name=Msa0079310-mRNA-1;_AED=0.28;_eAED=0.28;_QI=0|0.6|0.33|0.83|0.8|0.66|6|0|238
chr1_2 exon 57118555 57118560 57118555 ID=Msa0079310-mRNA-1:exon:17998;Parent=Msa0079310-mRNA-1
chr1_2 exon 57118632 57118719 57118632 ID=Msa0079310-mRNA-1:exon:17999;Parent=Msa0079310-mRNA-1
chr1_2 exon 57118834 57118958 57118834 ID=Msa0079310-mRNA-1:exon:18000;Parent=Msa0079310-mRNA-1
chr1_2 exon 57119187 57119282 57119187 ID=Msa0079310-mRNA-1:exon:18001;Parent=Msa0079310-mRNA-1
chr1_2 exon 57119654 57119885 57119654 ID=Msa0079310-mRNA-1:exon:18002;Parent=Msa0079310-mRNA-1
chr1_2 exon 57119923 57120092 57119923 ID=Msa0079310-mRNA-1:exon:18003;Parent=Msa0079310-mRNA-1
chr1_2 CDS 57118555 57118560 57118555 ID=Msa0079310-mRNA-1:cds;Parent=Msa0079310-mRNA-1
chr1_2 CDS 57118632 57118719 57118632 ID=Msa0079310-mRNA-1:cds;Parent=Msa0079310-mRNA-1
chr1_2 CDS 57118834 57118958 57118834 ID=Msa0079310-mRNA-1:cds;Parent=Msa0079310-mRNA-1
chr1_2 CDS 57119187 57119282 57119187 ID=Msa0079310-mRNA-1:cds;Parent=Msa0079310-mRNA-1
chr1_2 CDS 57119654 57119885 57119654 ID=Msa0079310-mRNA-1:cds;Parent=Msa0079310-mRNA-1
chr1_2 CDS 57119923 57120092 57119923 ID=Msa0079310-mRNA-1:cds;Parent=Msa0079310-mRNA-1
Gene Sequence

>Msa0079310

ATGAAGGTTTTCATTATGAAAATGCTGCAACATCCTAACATAGTCAATCTGATTGAGGTGATTGATGACCCAGAATTGGATAACTTCTACATGGTACTTGAATATGTGGAAGACAAATGGGTTTGTGAAGGTTCAGGTCGAGCTTGTGCCTTACGTGAAGAGACTGCTAGGAGATACTTGCGTGATATAGTTTGTGGATTAATGTATCTCCATGCTCATAATATAGTACATGGAGATATCAAGCCTGATAATCTGTTGATTACTCGTCATGGTACAGTGAAGATAAGGGATTTCAGTGTCAGCCAGGCTTGTGAGGATGATAATGATATGCTTCGACGATCACCTGGAACTCCTGTTTTCACTGCATCTGAATGTATTTTAGGTTGGTGTTTTCATTTTATGCTTGTAAAATGCATTTGGGTAATGATGTCTACGAAACGCAGGTTCTCACACTTTGTATTTGTTAATGTGTTTTTAGGTGTTACCTACAGTGGTAAAGCTGCGGACACATGGGCTGTAGGAGTTACTTTGTACTGTATGATATTGGATGTAGACCCAAAACAAAAGATGACGTTGACTGATGTCGCAGCAGATAGCTGGGTTATTGGAAATGATGGGCCAATTCCTTTGTACCTGTGCTGGTGCAAAAGGAAGAACTTGGTGAAGGAAGACAGTGATGAGAGCAACCAAGATGCTTCGTTGACCTATACTGACTGA
Protein sequence

>Msa0079310

MKVFIMKMLQHPNIVNLIEVIDDPELDNFYMVLEYVEDKWVCEGSGRACALREETARRYLRDIVCGLMYLHAHNIVHGDIKPDNLLITRHGTVKIRDFSVSQACEDDNDMLRRSPGTPVFTASECILGWCFHFMLVKCIWVMMSTKRRFSHFVFVNVFLGVTYSGKAADTWAVGVTLYCMILDVDPKQKMTLTDVAADSWVIGNDGPIPLYLCWCKRKNLVKEDSDESNQDASLTYTD*