AlfalfaGEDB | Msa0079470

M. sativa cultivar zhongmu-4 / Msa0079470

KEGG: K10875
GO: GO:0000003 GO:0000018 GO:0000280 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006139 GO:0006259 GO:0006310 GO:0006311 GO:0006325 GO:0006338 GO:0006342 GO:0006355 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015616 GO:0016043 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0022402 GO:0022414 GO:0030491 GO:0030702 GO:0031047 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0033170 GO:0034641 GO:0035822 GO:0035825 GO:0035861 GO:0040029 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048285 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051321 GO:0060255 GO:0061806 GO:0061982 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090734 GO:0097159 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1902679 GO:1903046 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
PFAM: PF16719.8

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0079470	KEH43046.1	86.005	1129	139	5	1	1123	1	1116	0.0	1990

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0079470	sp\|Q9M297\|CLSY1_ARATH	57.967	797	297	12	352	1123	472	1255	0.0	900
Msa0079470	sp\|Q9M297\|CLSY1_ARATH	36.333	300	162	8	4	290	2	285	2.02e-43	176

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0079470	A0A072VN36	86.005	1129	139	5	1	1123	1	1116	0.0	1990

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TFs/TRs:

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Gene ID	Type	Classification
Msa0079470	TR	SNF2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0079470	MtrunA17_Chr1g0191141	85.843	1109	138	5	21	1123	8	1103	0.0	1946
Msa0079470	MtrunA17_Chr7g0224051	66.726	1127	313	16	47	1122	1	1116	0.0	1454
Msa0079470	MtrunA17_Chr3g0114161	72.430	856	208	10	292	1122	395	1247	0.0	1211
Msa0079470	MtrunA17_Chr3g0114161	64.966	294	89	4	21	300	25	318	7.81e-111	374
Msa0079470	MtrunA17_Chr5g0437621	59.836	854	308	17	297	1122	457	1303	0.0	964
Msa0079470	MtrunA17_Chr5g0437621	43.438	320	143	8	5	299	4	310	5.48e-59	222
Msa0079470	MtrunA17_Chr7g0225791	34.813	721	426	16	398	1103	577	1268	2.09e-115	388
Msa0079470	MtrunA17_Chr7g0233031	34.345	725	404	16	416	1109	549	1232	2.27e-114	384
Msa0079470	MtrunA17_Chr7g0233021	35.784	721	386	18	416	1103	537	1213	6.04e-114	383
Msa0079470	MtrunA17_Chr4g0047081	34.722	720	409	17	416	1113	548	1228	2.66e-112	379

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0079470	AT3G42670.2	57.967	797	297	12	352	1123	472	1255	0.0	900
Msa0079470	AT3G42670.2	36.333	300	162	8	4	290	2	285	2.05e-44	176
Msa0079470	AT3G42670.3	57.967	797	297	12	352	1123	472	1255	0.0	900
Msa0079470	AT3G42670.3	36.333	300	162	8	4	290	2	285	2.05e-44	176
Msa0079470	AT3G42670.4	57.967	797	299	12	352	1123	472	1257	0.0	900
Msa0079470	AT3G42670.4	36.333	300	162	8	4	290	2	285	2.22e-44	176
Msa0079470	AT3G42670.1	57.967	797	297	12	352	1123	472	1255	0.0	900
Msa0079470	AT3G42670.1	36.333	300	162	8	4	290	2	285	2.05e-44	176
Msa0079470	AT5G20420.1	55.664	821	328	10	331	1123	449	1261	0.0	886
Msa0079470	AT5G20420.1	35.443	316	156	8	4	294	2	294	1.15e-45	180

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Find 166 sgRNAs with CRISPR-Local

Find 257 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGAATATTCCCGTGC+CGG	0.598414	1_2:+57376641	Msa0079470:CDS
AAAATTTATTCACGAAGTTC+TGG	0.379765	1_2:+57377070	Msa0079470:CDS
AAACTGCAAAAGAAAATGGC+GGG	0.587027	1_2:+57377368	Msa0079470:CDS
AAAGAAAACGTATCGAAAAG+CGG	0.683079	1_2:+57375351	Msa0079470:CDS
AAAGAGAAATCTGACACAAG+TGG	0.641751	1_2:+57376471	Msa0079470:CDS
AAAGAGATTCTGCAACTAAC+TGG	0.420585	1_2:+57377680	Msa0079470:CDS
AAAGCATTGAGGGAAAGTCC+TGG	0.590693	1_2:+57376888	Msa0079470:CDS
AAAGTTGAGGAAGTGCTTAA+TGG	0.350370	1_2:+57376956	Msa0079470:CDS
AAATTCACACAGAAAGCGCA+TGG	0.619203	1_2:+57376863	Msa0079470:CDS
AACAAATTTGCTTTGAGAAA+AGG	0.336871	1_2:+57377521	Msa0079470:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATACGATAATAGCGCTATAA+TGG	+	chr1_2:57373765-57373784	Msa0079470:intron	30.0%
GTAAGAAGATTGAACTTACT+GGG	-	chr1_2:57374336-57374355	None:intergenic	30.0%
AGTAAGAAGATTGAACTTAC+TGG	-	chr1_2:57374337-57374356	None:intergenic	30.0%
CACTGAAATAAAAACTCTGA+AGG	+	chr1_2:57374567-57374586	Msa0079470:CDS	30.0%
TGTAATGATGAAAAGTTGGA+AGG	+	chr1_2:57375033-57375052	Msa0079470:CDS	30.0%
AAAGAAAACGTATCGAAAAG+CGG	+	chr1_2:57375351-57375370	Msa0079470:CDS	30.0%
ACATCAAGTTATCTTCTTGA+TGG	+	chr1_2:57375435-57375454	Msa0079470:CDS	30.0%
TTATCTTCTTGATGGAAATG+AGG	+	chr1_2:57375443-57375462	Msa0079470:CDS	30.0%
ATTGACTGTTGAACCATTTA+TGG	+	chr1_2:57375599-57375618	Msa0079470:intron	30.0%
CAACTATTAAATACCATAGC+AGG	+	chr1_2:57375762-57375781	Msa0079470:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	57373567	57378144	57373567	ID=Msa0079470;Name=Msa0079470
chr1_2	mRNA	57373567	57378144	57373567	ID=Msa0079470-mRNA-1;Parent=Msa0079470;Name=Msa0079470-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0\|0\|0\|0.8\|1\|1\|5\|0\|1123
chr1_2	exon	57373567	57373624	57373567	ID=Msa0079470-mRNA-1:exon:18094;Parent=Msa0079470-mRNA-1
chr1_2	exon	57374098	57374336	57374098	ID=Msa0079470-mRNA-1:exon:18095;Parent=Msa0079470-mRNA-1
chr1_2	exon	57374460	57375464	57374460	ID=Msa0079470-mRNA-1:exon:18096;Parent=Msa0079470-mRNA-1
chr1_2	exon	57375784	57375933	57375784	ID=Msa0079470-mRNA-1:exon:18097;Parent=Msa0079470-mRNA-1
chr1_2	exon	57376225	57378144	57376225	ID=Msa0079470-mRNA-1:exon:18098;Parent=Msa0079470-mRNA-1
chr1_2	CDS	57373567	57373624	57373567	ID=Msa0079470-mRNA-1:cds;Parent=Msa0079470-mRNA-1
chr1_2	CDS	57374098	57374336	57374098	ID=Msa0079470-mRNA-1:cds;Parent=Msa0079470-mRNA-1
chr1_2	CDS	57374460	57375464	57374460	ID=Msa0079470-mRNA-1:cds;Parent=Msa0079470-mRNA-1
chr1_2	CDS	57375784	57375933	57375784	ID=Msa0079470-mRNA-1:cds;Parent=Msa0079470-mRNA-1
chr1_2	CDS	57376225	57378144	57376225	ID=Msa0079470-mRNA-1:cds;Parent=Msa0079470-mRNA-1

Gene Sequence

>Msa0079470

ATGGCGCCCGAAAAAAATTATTTGCATCAATCGAAACATCCATTCGATGCTAATTATCCATTTGAAGCAGTATTGAATGGCTCATGGGAACCTGTGGAACTCATAAAAATTGATTCTGGGAAAACTACCATACATTTCCTCCATGCACAACAAACTCATAGTAATTTGTCATCAGACATCCGGATAAGATCAAGAAAAGCTACTTCGACTGATTGCTCCAGTTTCCTAAGACCTGGAATTGACATATCTGTGCTATCAAGCTTTCGATACGATAAAAACTCACGTCAATCTAGCCCAATGTCGACTGATGCTAGAGTGAATTCCATACACAAAAAACCTCACAAATATAACCAATGTTCATGTCGATTTCATGTAAACTTTTATGATGATCAAGGTTCACTTGGCACTGAAATAAAAACTCTGAAGGAAGAGGATAATGTGATTGGAATTGAGAAAATTTTCATCCTCCAAAGACTTCAACGAAATAACTGTGAAGGATCGTTAAGAGAAAATGATTGTTCTGAAGTTAATTCTTTTAGAAGGGATTCATCAGAAGACTGCTCTTCATTGCCACAATCTAGGTTACTTTTCGGGAAGTTTTTGTCTGATCTTTCCTGGTTTGTTACCGCGTCATCTTTAAAGAAGGTTGCATTTGTCATAAGATCGGTTCAAAACAAGCTTGTGCATCAAGTTATGGGAAATGATCCTAATATTAGTAGTCCTATGAATGTTTTGAACTTCAAATCAGAAAACGGATCACTTGAGCATGATTATGACGGAGAAGGTGCAATGCGGCCAATGCCAAGAAGCGAAATTGGAGGTCTACGACGCTCAAAACGTAGGACCATACAACTTGAACATTACGTAGATTGTAATGATGAAAAGTTGGAAGGTGGTGATAATGTTTCTTCGGGACATGTTAATAATTTCTGCACAAAGAAGCTTAAGAGAAGGTGGTTGTTTAAGGAGCATATGGATTTGATAGCTTTATGGGAAGCGATACAATCCAAAGAAGGTGTTCAAAAGAAAACGACAAACAGTATCGATGATCATGAAGAACAGGATCATAGAGGCAGTAGAACGTTAAATGCTGATACCTGCGAGGAAGTAATCGATGCTTACATGGATAATTTTGATAGCCTACCAGAAGATCCAACTATCAGTGAAGAAAGACAGTTTGAGCAGGAGAAAGAAAACGTATCGAAAAGCGGTGATGAGGTAGAAAATCCTGATGATTTGGCTGGCATATGGGAAGAAATGAATACAGCTTTGACATCAAGTTATCTTCTTGATGGAAATGAGGGTGCAAATGCTGATGAGGTTTTAGCTGACACAAATAAAGAATCCAAGGAAACATGTGAACATGATTATCGATTGGATGAACAAATTGGAATATACTGCCGTACATGCGGCTTTGTGAAAACTGAGATACGATACATTTCTGAACCCATTGTGACAAGGCTAAAATGGTACGAACAGAAGAAACAATGCAGTGAAGATACGGAACAAGTTGATGAAGATGATAATAATGATACGTTCTCAACTGATGCTACTGATCTTGGTGAACCTATATCCAAAGAAAATGATAGTGTTTGGGAATTGATTCCTGAACTCAAAGAAAACATGCATGCACACCAGAAAAAAGCTTTCGAGTTTCTTTGGAAAAACATTGCAGGGTCTATGGATCAATCACTCATGAAAGAGAAATCTGACACAAGTGGTGGCTGTGTTATATCTCATGCTCCTGGAGCTGGAAAAACCTTTCTCATCATCTCTTTTCTTGTAAGCTATTTGAAATTATTTCCACAGAAAAGACCATTAGTCCTAGCTCCAAAGACCACACTCTACACATGGCAAAAAGAGTTCGAAAAATGGAATATTCCCGTGCCGGTGTATCTTATCCACAGCTGTCGAAGCCAGATACATTCAACGACACCAAAATCAATGGTTCTGCCTGGAGTTCCAAATTCTAATGGTGTCAAGCATGATTTGGATTGTCTAGAAAAGATCAAAAGCTGGAATTCACACCCTAGTGTTCTTGTCATGGGTTATTCTTCATTTTTAGCCTTAATGAGAACAGAAGATAAGAAAAATTCACACAGAAAGCGCATGGCTAAAGCATTGAGGGAAAGTCCTGGACTCTTGATACTTGATGAGGGACACAATCCTAGAAGTACCACATCAAAGTTGAGGAAGTGCTTAATGGATCTACCAGCAGCATTGAGAATTTTACTTTCTGGCACTTTGTTTCAAAACAATTTTGGGGAATACTTCAACACTCTCTGTTTAGCCAGACCAAAATTTATTCACGAAGTTCTGGAAGAGTTAGATTCTAAGTACAGAAGAGGCAAACTAGAGGAGGAAGCGCCTCATTTACTAGAGGCACGCGCGAGAAAATTCTTCTTGGAGAACATTGAAAAGAAAATGAACTCAAATATTGATGCGGAAAAAATGAAGGGTGTAGATGTGCTTCGAAAAATCACAAATGGTTTTATAGATGTTTATGACAGTGCAAGTTCTTCTGATACTCTTCCTGGTTTGCAAATCTATACATTGCTCGTGAATGCATCCGATGAACAACACGAGATTGTGCAGAAACTGCAAAAGAAAATGGCGGGCTGTACCGGTTACTCTCTTGAGGTTGAGCTTTTGATAACACTCGGGTCAATACACCCATGGTTGATCAAAACAGCAGAAACATGTGCAGCTAAGTTTTTCTCCGGTGAAGAGTTGAAAAAACTAGACGAAAACAAATTTGCTTTGAGAAAAGGTTCCAAAGTAAGATTTGTTTTGAGCCTAATCTCACGTGTGATGAGCAAGGAAAAGGTTCTTATCTTCTGTCACAACCTTGCACCAGTGAGGTTTTTAATAGAGTTATTTGAGAATCATTTTCAGTGGAAAAATGGTAAAGAGATTCTGCAACTAACTGGTGAACAAGACTTCTTTGAAAGAACGAATGTGATAGATAAATTTGAAGATCGTTGTGGCGATTCAAAGATACTTCTTGCTTCAATCAATGCTTGTTCTGAAGGTATCAGTTTAACATCAGCTTCAAGAGTGATTTTCTTGGATTCTGAGTGGAATCCTTCAAAAACAAAGCAAGCTATTGCACGCGCTTTTCGACCTGGTCAAGAGAAAATGGTTTATGTATATCACTTGTTGATGACTGGATCCATGGAGGAAGATAAATATAGAAGAACTACTTGGAAAGAGTGGGTTTCTTGTATGATTTTCAGTGAGGAGCTTGTTGAAGATCCTTCCGAATGGCAAGCTGAGAAGATTGAAGATGAAATACTCAGGGAGATGGTTGAAGAGGACAAGTCTAAACTCATTCATATGATTATGAAGAATGAAAAGACTTCAACAAGCTAA

Protein sequence

>Msa0079470

MAPEKNYLHQSKHPFDANYPFEAVLNGSWEPVELIKIDSGKTTIHFLHAQQTHSNLSSDIRIRSRKATSTDCSSFLRPGIDISVLSSFRYDKNSRQSSPMSTDARVNSIHKKPHKYNQCSCRFHVNFYDDQGSLGTEIKTLKEEDNVIGIEKIFILQRLQRNNCEGSLRENDCSEVNSFRRDSSEDCSSLPQSRLLFGKFLSDLSWFVTASSLKKVAFVIRSVQNKLVHQVMGNDPNISSPMNVLNFKSENGSLEHDYDGEGAMRPMPRSEIGGLRRSKRRTIQLEHYVDCNDEKLEGGDNVSSGHVNNFCTKKLKRRWLFKEHMDLIALWEAIQSKEGVQKKTTNSIDDHEEQDHRGSRTLNADTCEEVIDAYMDNFDSLPEDPTISEERQFEQEKENVSKSGDEVENPDDLAGIWEEMNTALTSSYLLDGNEGANADEVLADTNKESKETCEHDYRLDEQIGIYCRTCGFVKTEIRYISEPIVTRLKWYEQKKQCSEDTEQVDEDDNNDTFSTDATDLGEPISKENDSVWELIPELKENMHAHQKKAFEFLWKNIAGSMDQSLMKEKSDTSGGCVISHAPGAGKTFLIISFLVSYLKLFPQKRPLVLAPKTTLYTWQKEFEKWNIPVPVYLIHSCRSQIHSTTPKSMVLPGVPNSNGVKHDLDCLEKIKSWNSHPSVLVMGYSSFLALMRTEDKKNSHRKRMAKALRESPGLLILDEGHNPRSTTSKLRKCLMDLPAALRILLSGTLFQNNFGEYFNTLCLARPKFIHEVLEELDSKYRRGKLEEEAPHLLEARARKFFLENIEKKMNSNIDAEKMKGVDVLRKITNGFIDVYDSASSSDTLPGLQIYTLLVNASDEQHEIVQKLQKKMAGCTGYSLEVELLITLGSIHPWLIKTAETCAAKFFSGEELKKLDENKFALRKGSKVRFVLSLISRVMSKEKVLIFCHNLAPVRFLIELFENHFQWKNGKEILQLTGEQDFFERTNVIDKFEDRCGDSKILLASINACSEGISLTSASRVIFLDSEWNPSKTKQAIARAFRPGQEKMVYVYHLLMTGSMEEDKYRRTTWKEWVSCMIFSEELVEDPSEWQAEKIEDEILREMVEEDKSKLIHMIMKNEKTSTS*