Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0079540 | sp|Q99090|CPRF2_PETCR | 53.882 | 425 | 153 | 11 | 1 | 406 | 1 | 401 | 1.64e-118 | 353 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0079540 | A0A072VN13 | 93.720 | 414 | 16 | 2 | 1 | 406 | 1 | 412 | 0.0 | 742 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0079540 | TF | bZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0079540 | MtrunA17_Chr1g0190761 | 93.720 | 414 | 16 | 2 | 1 | 406 | 1 | 412 | 0.0 | 742 |
| Msa0079540 | MtrunA17_Chr7g0274141 | 54.839 | 403 | 153 | 9 | 1 | 393 | 1 | 384 | 1.49e-121 | 357 |
| Msa0079540 | MtrunA17_Chr3g0139301 | 52.593 | 135 | 57 | 4 | 169 | 299 | 96 | 227 | 1.82e-30 | 118 |
| Msa0079540 | MtrunA17_Chr1g0147491 | 59.504 | 121 | 45 | 2 | 172 | 292 | 143 | 259 | 4.99e-27 | 110 |
| Msa0079540 | MtrunA17_Chr3g0139571 | 59.459 | 74 | 30 | 0 | 201 | 274 | 1 | 74 | 1.55e-17 | 77.0 |
| Msa0079540 | MtrunA17_Chr4g0035414 | 41.304 | 92 | 54 | 0 | 200 | 291 | 28 | 119 | 3.59e-14 | 69.7 |
| Msa0079540 | MtrunA17_Chr7g0225661 | 45.055 | 91 | 45 | 1 | 184 | 274 | 71 | 156 | 7.99e-14 | 69.7 |
| Msa0079540 | MtrunA17_Chr8g0341311 | 45.055 | 91 | 45 | 1 | 184 | 274 | 61 | 146 | 8.21e-14 | 69.3 |
| Msa0079540 | MtrunA17_Chr3g0144941 | 38.043 | 92 | 57 | 0 | 200 | 291 | 28 | 119 | 1.45e-13 | 68.2 |
| Msa0079540 | MtrunA17_Chr6g0456061 | 47.297 | 74 | 39 | 0 | 202 | 275 | 90 | 163 | 2.26e-13 | 68.6 |
| Msa0079540 | MtrunA17_Chr8g0378901 | 31.092 | 119 | 79 | 1 | 173 | 291 | 9 | 124 | 1.75e-12 | 65.1 |
| Msa0079540 | MtrunA17_Chr1g0155551 | 30.000 | 160 | 92 | 4 | 172 | 318 | 7 | 159 | 1.95e-11 | 62.0 |
| Msa0079540 | MtrunA17_Chr8g0373571 | 43.529 | 85 | 46 | 1 | 186 | 270 | 248 | 330 | 2.45e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0079540 | AT5G28770.2 | 45.088 | 397 | 130 | 14 | 1 | 394 | 1 | 312 | 5.44e-76 | 239 |
| Msa0079540 | AT5G28770.1 | 44.332 | 397 | 126 | 15 | 1 | 394 | 1 | 305 | 3.07e-71 | 226 |
| Msa0079540 | AT5G28770.3 | 48.913 | 276 | 90 | 9 | 1 | 275 | 1 | 226 | 1.99e-56 | 186 |
| Msa0079540 | AT4G02640.2 | 39.329 | 328 | 146 | 5 | 1 | 291 | 1 | 312 | 9.80e-49 | 171 |
| Msa0079540 | AT4G02640.3 | 39.329 | 328 | 146 | 5 | 1 | 291 | 1 | 312 | 1.01e-48 | 171 |
| Msa0079540 | AT4G02640.4 | 39.329 | 328 | 140 | 5 | 1 | 291 | 1 | 306 | 3.09e-48 | 169 |
| Msa0079540 | AT4G02640.1 | 39.329 | 328 | 140 | 5 | 1 | 291 | 1 | 306 | 3.31e-48 | 169 |
| Msa0079540 | AT3G54620.1 | 38.692 | 367 | 144 | 14 | 1 | 314 | 1 | 339 | 1.58e-43 | 157 |
| Msa0079540 | AT5G24800.1 | 44.444 | 189 | 92 | 5 | 131 | 310 | 51 | 235 | 4.05e-37 | 136 |
| Msa0079540 | AT5G28770.4 | 45.228 | 241 | 73 | 10 | 1 | 236 | 1 | 187 | 8.05e-34 | 126 |
| Msa0079540 | AT3G54620.3 | 36.785 | 367 | 134 | 16 | 1 | 314 | 1 | 322 | 8.94e-29 | 116 |
| Msa0079540 | AT2G18160.1 | 41.758 | 91 | 53 | 0 | 194 | 284 | 23 | 113 | 3.79e-14 | 70.5 |
| Msa0079540 | AT2G04038.1 | 43.617 | 94 | 48 | 1 | 181 | 274 | 58 | 146 | 6.93e-13 | 66.6 |
| Msa0079540 | AT1G75390.1 | 36.522 | 115 | 68 | 1 | 197 | 311 | 36 | 145 | 1.01e-12 | 66.6 |
| Msa0079540 | AT3G30530.1 | 37.864 | 103 | 60 | 1 | 172 | 274 | 55 | 153 | 3.02e-12 | 65.1 |
| Msa0079540 | AT1G13600.1 | 45.333 | 75 | 41 | 0 | 200 | 274 | 84 | 158 | 9.19e-12 | 64.3 |
| Msa0079540 | AT3G62420.1 | 32.692 | 104 | 60 | 1 | 199 | 302 | 22 | 115 | 1.40e-11 | 62.4 |
| Msa0079540 | AT5G15830.1 | 50.000 | 66 | 27 | 1 | 184 | 249 | 62 | 121 | 5.57e-11 | 61.6 |
Find 147 sgRNAs with CRISPR-Local
Find 377 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGATGATCCACTTGTTGA+TGG | 0.223100 | 1_2:+57446795 | None:intergenic |
| GCATCTTTATCTTGTAATAT+AGG | 0.256635 | 1_2:+57446882 | None:intergenic |
| CCGCAGAATCAGTGTACTTT+TGG | 0.261444 | 1_2:+57445515 | None:intergenic |
| CCTACAACTGCTGCATTGTT+TGG | 0.276575 | 1_2:+57444581 | None:intergenic |
| AATCAAACAAACTTGTTTCC+TGG | 0.281020 | 1_2:+57444103 | None:intergenic |
| TCCAACTTTAGTAGCATTAG+AGG | 0.290868 | 1_2:+57447237 | None:intergenic |
| TGCACCCCATATCTTCGTTT+GGG | 0.319723 | 1_2:-57444291 | Msa0079540:three_prime_UTR |
| TTGATTCAAACCTTCAGAAA+TGG | 0.321181 | 1_2:+57447207 | None:intergenic |
| AACAAGTTTGTTTGATTTGA+AGG | 0.331713 | 1_2:-57444097 | None:intergenic |
| GCATTCCCCAAACGAAGATA+TGG | 0.348614 | 1_2:+57444285 | None:intergenic |
| TATGCAGGATCTGTTCCTTC+TGG | 0.364918 | 1_2:-57446915 | Msa0079540:intron |
| ACTTATTCCCTCAAAATGTT+TGG | 0.368104 | 1_2:-57444231 | Msa0079540:three_prime_UTR |
| GCAATTTACTGCTCTCCATT+AGG | 0.372962 | 1_2:+57444452 | None:intergenic |
| CTTTCTTCTTCTTGAGCGCC+TGG | 0.376215 | 1_2:+57445739 | None:intergenic |
| CCGTTGATTCCGAAGAATAT+CGG | 0.379335 | 1_2:-57449044 | Msa0079540:CDS |
| GTTGCACCGGGTGGCTAGCT+TGG | 0.383977 | 1_2:-57444528 | Msa0079540:CDS |
| GTGCACCCCATATCTTCGTT+TGG | 0.386929 | 1_2:-57444292 | Msa0079540:three_prime_UTR |
| CATAGACTTTAATGTATAAG+AGG | 0.389564 | 1_2:+57444255 | None:intergenic |
| TGCGGTGACCATAGGTTGTC+GGG | 0.393062 | 1_2:+57449261 | None:intergenic |
| ACTAAAGCAACCACAAGATA+TGG | 0.405332 | 1_2:+57444430 | None:intergenic |
| CCAAACAATGCAGCAGTTGT+AGG | 0.408840 | 1_2:-57444581 | Msa0079540:CDS |
| TGATTCAAACCTTCAGAAAT+GGG | 0.409793 | 1_2:+57447208 | None:intergenic |
| TCTTGTGGACCTCCTCCTAA+TGG | 0.410328 | 1_2:-57444467 | Msa0079540:CDS |
| GTCAAGAAGTTATTCTTGTC+TGG | 0.411500 | 1_2:-57444409 | Msa0079540:three_prime_UTR |
| TCCTCTAATGCTACTAAAGT+TGG | 0.420756 | 1_2:-57447238 | Msa0079540:CDS |
| ATGGGGATGCCAGCATTTGA+TGG | 0.424587 | 1_2:-57444758 | Msa0079540:CDS |
| GCAGGCTCATTTAACTGAGT+TGG | 0.425028 | 1_2:-57445717 | Msa0079540:CDS |
| GCGCCTGGCTGACTCTCTAT+TGG | 0.428094 | 1_2:+57445754 | None:intergenic |
| GCGCTGCGGTTGCCATGACT+CGG | 0.433642 | 1_2:-57448990 | Msa0079540:CDS |
| ATTCATGTCACCGGCGGCGC+CGG | 0.438697 | 1_2:-57449237 | Msa0079540:CDS |
| CTTTAGGTTTCACAATTAAG+AGG | 0.441246 | 1_2:-57445577 | Msa0079540:intron |
| GAGACTGTGAAAAGAGTTAC+CGG | 0.441519 | 1_2:-57444821 | Msa0079540:CDS |
| CAGAACAGCCCGATATTCTT+CGG | 0.443037 | 1_2:+57449035 | None:intergenic |
| GCCAGCGGAGGTGGTCCATT+GGG | 0.445388 | 1_2:+57449066 | None:intergenic |
| TCCACTTGTTGATGGCCTAA+TGG | 0.446126 | 1_2:+57446803 | None:intergenic |
| GGAAGCGCTGCGACTCATCT+TGG | 0.448544 | 1_2:+57449203 | None:intergenic |
| GAGGACTGTGGTCCATTCTC+AGG | 0.449150 | 1_2:+57447256 | None:intergenic |
| CGTTGATTCCGAAGAATATC+GGG | 0.456409 | 1_2:-57449043 | Msa0079540:CDS |
| AAACAGCTCCTCCGTTGCAC+CGG | 0.457579 | 1_2:-57444541 | Msa0079540:CDS |
| GAATCAACGGCCAGCGGAGG+TGG | 0.460686 | 1_2:+57449057 | None:intergenic |
| GGCGGTATGGAAGGGATCGC+AGG | 0.461844 | 1_2:+57446849 | None:intergenic |
| TCTGAAGAGTAAGCTGAATC+AGG | 0.465092 | 1_2:-57449016 | Msa0079540:CDS |
| GCCCAATGGACCACCTCCGC+TGG | 0.466544 | 1_2:-57449067 | Msa0079540:CDS |
| GTTTGGTTCATGCGAGGGAA+GGG | 0.469923 | 1_2:-57444214 | Msa0079540:three_prime_UTR |
| GGCCAGCGGAGGTGGTCCAT+TGG | 0.476109 | 1_2:+57449065 | None:intergenic |
| AAAGATCTTAAAGATACTAC+TGG | 0.477076 | 1_2:-57444164 | Msa0079540:three_prime_UTR |
| ATGAGAGTCAACAATGGGTT+GGG | 0.479222 | 1_2:-57444632 | Msa0079540:CDS |
| TTCTGCACAGGCGGTATGGA+AGG | 0.484341 | 1_2:+57446840 | None:intergenic |
| GGATTCATCGCCGGCGCCGC+CGG | 0.486207 | 1_2:+57449227 | None:intergenic |
| CATTCCCCAAACGAAGATAT+GGG | 0.490546 | 1_2:+57444286 | None:intergenic |
| ATGCCTGACATGTCATCAAT+GGG | 0.494648 | 1_2:-57444776 | Msa0079540:CDS |
| CAGCTTCTTGCAGAAAGCGT+TGG | 0.498650 | 1_2:+57449169 | None:intergenic |
| GAGTCGCAGCGCTTCCGAAT+GGG | 0.498693 | 1_2:-57449196 | Msa0079540:CDS |
| AAAGCGTTGGAACGCCCATT+CGG | 0.499920 | 1_2:+57449182 | None:intergenic |
| ACGAAATCCCCGACAACCTA+TGG | 0.501904 | 1_2:-57449269 | Msa0079540:CDS |
| TTTGGTTCATGCGAGGGAAG+GGG | 0.506130 | 1_2:-57444213 | Msa0079540:three_prime_UTR |
| CATTGCAAATCAATTTAATG+AGG | 0.507385 | 1_2:-57444337 | Msa0079540:three_prime_UTR |
| ATCCCCATTGATGACATGTC+AGG | 0.511654 | 1_2:+57444773 | None:intergenic |
| TGTTTGGTTCATGCGAGGGA+AGG | 0.519821 | 1_2:-57444215 | Msa0079540:three_prime_UTR |
| CTGCGGTGACCATAGGTTGT+CGG | 0.521113 | 1_2:+57449260 | None:intergenic |
| CATCTTCAGAAGCGGATTCG+TGG | 0.522135 | 1_2:-57444503 | Msa0079540:CDS |
| TGCATCTGCTGAATTGTCTG+AGG | 0.523554 | 1_2:+57444730 | None:intergenic |
| GCATCTGCTGAATTGTCTGA+GGG | 0.526766 | 1_2:+57444731 | None:intergenic |
| GAGGGGCTTCCATCAAATGC+TGG | 0.527926 | 1_2:+57444749 | None:intergenic |
| TTCCAACAAACAACATGGAT+AGG | 0.529412 | 1_2:-57449305 | None:intergenic |
| AACAGCTCCTCCGTTGCACC+GGG | 0.530036 | 1_2:-57444540 | Msa0079540:CDS |
| CATGCCTGACATGTCATCAA+TGG | 0.535358 | 1_2:-57444777 | Msa0079540:CDS |
| AGGTGGTCCATTGGGCAAAA+CGG | 0.537410 | 1_2:+57449074 | None:intergenic |
| ATGAAACAATGGGTTCAATC+CGG | 0.537486 | 1_2:+57444802 | None:intergenic |
| TACTGCTCTCCATTAGGAGG+AGG | 0.537865 | 1_2:+57444458 | None:intergenic |
| AAGCTAGCCACCCGGTGCAA+CGG | 0.537945 | 1_2:+57444530 | None:intergenic |
| CAGGCATGACATGAAACAAT+GGG | 0.540921 | 1_2:+57444792 | None:intergenic |
| TATGAGAGTCAACAATGGGT+TGG | 0.540959 | 1_2:-57444633 | Msa0079540:CDS |
| AAGAGGTGAAAATTCTACCT+TGG | 0.544049 | 1_2:-57445560 | Msa0079540:CDS |
| AGTTGTAGGTGGGAACAAGA+TGG | 0.544585 | 1_2:-57444567 | Msa0079540:CDS |
| CTACTGACGTAAAACGAGTA+AGG | 0.544656 | 1_2:-57446713 | Msa0079540:CDS |
| GGATCTCAGCCCATTTCTGA+AGG | 0.545730 | 1_2:-57447217 | Msa0079540:intron |
| GGCATAGGATTAATAGATGT+GGG | 0.545925 | 1_2:+57444665 | None:intergenic |
| TCCTCTGTTGCTGACAACAC+CGG | 0.546501 | 1_2:-57449126 | Msa0079540:intron |
| TGAGTCGCAGCGCTTCCGAA+TGG | 0.548231 | 1_2:-57449197 | Msa0079540:CDS |
| TTGGTTCATGCGAGGGAAGG+GGG | 0.549040 | 1_2:-57444212 | Msa0079540:three_prime_UTR |
| CATGAATCTGCGGTGACCAT+AGG | 0.554146 | 1_2:+57449253 | None:intergenic |
| AACAATGCAGCAGTTGTAGG+TGG | 0.555285 | 1_2:-57444578 | Msa0079540:CDS |
| TCTTTATCTTGTAATATAGG+TGG | 0.555696 | 1_2:+57446885 | None:intergenic |
| CAGAAGCGGATTCGTGGTGG+CGG | 0.557372 | 1_2:-57444497 | Msa0079540:CDS |
| GGAAGAAGAAGGAGAAGGTG+TGG | 0.558163 | 1_2:+57449146 | None:intergenic |
| TGGTCCATTCTCAGGAAAAG+TGG | 0.558279 | 1_2:+57447264 | None:intergenic |
| GCTGAATCAGGCGTGCGCTG+CGG | 0.559935 | 1_2:-57449004 | Msa0079540:CDS |
| CGCTGCGGTTGCCATGACTC+GGG | 0.561149 | 1_2:-57448989 | Msa0079540:intron |
| GTTGTAGGTGGGAACAAGAT+GGG | 0.562961 | 1_2:-57444566 | Msa0079540:CDS |
| TTTCCAATAGAGAGTCAGCC+AGG | 0.566133 | 1_2:-57445757 | Msa0079540:CDS |
| CAGTAAATTGCCATATCTTG+TGG | 0.566791 | 1_2:-57444440 | Msa0079540:exon |
| CCGATATTCTTCGGAATCAA+CGG | 0.569768 | 1_2:+57449044 | None:intergenic |
| CTAGCCACCCGGTGCAACGG+AGG | 0.575800 | 1_2:+57444533 | None:intergenic |
| AGGGATCGCAGGTGGTACCT+TGG | 0.576379 | 1_2:+57446860 | None:intergenic |
| TCAGCAACAGAGGAAGAAGA+AGG | 0.578164 | 1_2:+57449135 | None:intergenic |
| GCGCTCAAGAAGAAGAAAGC+AGG | 0.578810 | 1_2:-57445735 | Msa0079540:CDS |
| ACCGGTGTTGTCAGCAACAG+AGG | 0.579200 | 1_2:+57449125 | None:intergenic |
| TCTGCACAGGCGGTATGGAA+GGG | 0.579471 | 1_2:+57446841 | None:intergenic |
| TTTAACTGAGTTGGAAACAC+AGG | 0.582001 | 1_2:-57445708 | Msa0079540:intron |
| TGGCATAGGATTAATAGATG+TGG | 0.582245 | 1_2:+57444664 | None:intergenic |
| ATAGACTTTAATGTATAAGA+GGG | 0.582705 | 1_2:+57444256 | None:intergenic |
| TCCAACAAACAACATGGATA+GGG | 0.587093 | 1_2:-57449304 | None:intergenic |
| CATTCTCAGGAAAAGTGGCT+AGG | 0.587934 | 1_2:+57447269 | None:intergenic |
| ATTTACTGCTCTCCATTAGG+AGG | 0.588321 | 1_2:+57444455 | None:intergenic |
| GACATATATGATTGACAGCA+CGG | 0.588439 | 1_2:-57446739 | Msa0079540:CDS |
| TCGGAATCAACGGCCAGCGG+AGG | 0.589477 | 1_2:+57449054 | None:intergenic |
| CAAAATGTTTGGTTCATGCG+AGG | 0.590432 | 1_2:-57444220 | Msa0079540:three_prime_UTR |
| AAAATGTTTGGTTCATGCGA+GGG | 0.590503 | 1_2:-57444219 | Msa0079540:three_prime_UTR |
| TCAGGCATGACATGAAACAA+TGG | 0.593558 | 1_2:+57444791 | None:intergenic |
| GCACCCCATATCTTCGTTTG+GGG | 0.594035 | 1_2:-57444290 | Msa0079540:three_prime_UTR |
| ATTACAAGATAAAGATGCCA+AGG | 0.595359 | 1_2:-57446877 | Msa0079540:CDS |
| GTCTGATGATGACGAAGCTG+AGG | 0.596500 | 1_2:-57446766 | Msa0079540:CDS |
| AGCTCCTCCGTTGCACCGGG+TGG | 0.597935 | 1_2:-57444537 | Msa0079540:CDS |
| ATGATATGAGAGTCAACAAT+GGG | 0.599172 | 1_2:-57444637 | Msa0079540:CDS |
| TCTTCGGAATCAACGGCCAG+CGG | 0.600472 | 1_2:+57449051 | None:intergenic |
| TGTTGAAACGTTAAGAGCAA+AGG | 0.608038 | 1_2:-57445467 | Msa0079540:intron |
| GCCATTAGGCCATCAACAAG+TGG | 0.609169 | 1_2:-57446804 | Msa0079540:CDS |
| AGCGCTGCGACTCATCTTGG+AGG | 0.610597 | 1_2:+57449206 | None:intergenic |
| GCTTGGAACATCTTCAGAAG+CGG | 0.612188 | 1_2:-57444511 | Msa0079540:CDS |
| CTCATATCATGACATGGCAT+AGG | 0.623120 | 1_2:+57444650 | None:intergenic |
| TCTGATGATGACGAAGCTGA+GGG | 0.626334 | 1_2:-57446765 | Msa0079540:CDS |
| CATCTTGGAGGATTCATCGC+CGG | 0.632617 | 1_2:+57449218 | None:intergenic |
| GATGTTCCAAGCTAGCCACC+CGG | 0.633541 | 1_2:+57444522 | None:intergenic |
| TCACCGCAGATTCATGTCAC+CGG | 0.635057 | 1_2:-57449246 | Msa0079540:CDS |
| ACAGAGGAAGAAGAAGGAGA+AGG | 0.637590 | 1_2:+57449141 | None:intergenic |
| GGTATGGAAGGGATCGCAGG+TGG | 0.640990 | 1_2:+57446852 | None:intergenic |
| CCAAAAGTACACTGATTCTG+CGG | 0.642477 | 1_2:-57445515 | Msa0079540:CDS |
| TGATGTGGATCGTCTTGCAC+AGG | 0.644197 | 1_2:+57444701 | None:intergenic |
| ACAATGCAGCAGTTGTAGGT+GGG | 0.644613 | 1_2:-57444577 | Msa0079540:CDS |
| ATAGGTGGATCGCTTCCAGA+AGG | 0.645523 | 1_2:+57446900 | None:intergenic |
| TGATGGCCTAATGGCAACAA+TGG | 0.646272 | 1_2:+57446812 | None:intergenic |
| GGTTGATAGAAATGATGATG+TGG | 0.646871 | 1_2:+57444686 | None:intergenic |
| GCGGTGACCATAGGTTGTCG+GGG | 0.657758 | 1_2:+57449262 | None:intergenic |
| ATCAGTAAGACGCTTTACCA+AGG | 0.660921 | 1_2:+57445543 | None:intergenic |
| TTGACTCTCATATCATGACA+TGG | 0.663706 | 1_2:+57444644 | None:intergenic |
| CTTCAGAAGCGGATTCGTGG+TGG | 0.671591 | 1_2:-57444500 | Msa0079540:CDS |
| CCGCCGGTGACATGAATCTG+CGG | 0.671643 | 1_2:+57449243 | None:intergenic |
| CCGCAGATTCATGTCACCGG+CGG | 0.672407 | 1_2:-57449243 | Msa0079540:CDS |
| TTAGTAGCATTAGAGGACTG+TGG | 0.673158 | 1_2:+57447244 | None:intergenic |
| CATCTGCTGAATTGTCTGAG+GGG | 0.674812 | 1_2:+57444732 | None:intergenic |
| CATGATATGAGAGTCAACAA+TGG | 0.678198 | 1_2:-57444638 | Msa0079540:CDS |
| GGTGGCGGTGTCGATTCTTG+TGG | 0.683085 | 1_2:-57444482 | Msa0079540:CDS |
| ATTCCCCAAACGAAGATATG+GGG | 0.689146 | 1_2:+57444287 | None:intergenic |
| CATGGATAGGGTATTCTCAG+TGG | 0.691390 | 1_2:-57449292 | Msa0079540:CDS |
| CTGACGTAAAACGAGTAAGG+AGG | 0.694894 | 1_2:-57446710 | Msa0079540:intron |
| TGCCTGACATGTCATCAATG+GGG | 0.791811 | 1_2:-57444775 | Msa0079540:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTAACTAAATTTCAAA+AGG | + | chr1_2:57444925-57444944 | None:intergenic | 10.0% |
| !! | AAAAAAATATTTATTAACCA+AGG | + | chr1_2:57445762-57445781 | None:intergenic | 10.0% |
| !!! | CTTACAAATAATATAATTTT+TGG | + | chr1_2:57447466-57447485 | None:intergenic | 10.0% |
| !!! | TTTTTGTTATTTTTGCATTA+TGG | - | chr1_2:57444542-57444561 | Msa0079540:CDS | 15.0% |
| !!! | TTTTGTTATTTTTGCATTAT+GGG | - | chr1_2:57444543-57444562 | Msa0079540:CDS | 15.0% |
| !! | AAAATAATGCAAAAAGAAAA+TGG | + | chr1_2:57445545-57445564 | None:intergenic | 15.0% |
| !! | AAAAAGTTTAATGACAATAT+TGG | - | chr1_2:57446273-57446292 | Msa0079540:intron | 15.0% |
| !! | TTTGAGAGAATAAAAAAAAA+AGG | + | chr1_2:57446991-57447010 | None:intergenic | 15.0% |
| !! | TTGTTATAACAAATAAAAAG+TGG | + | chr1_2:57447357-57447376 | None:intergenic | 15.0% |
| !!! | ATAATTTTTGGATAAAACTT+GGG | + | chr1_2:57447454-57447473 | None:intergenic | 15.0% |
| !!! | TATAATTTTTGGATAAAACT+TGG | + | chr1_2:57447455-57447474 | None:intergenic | 15.0% |
| !! | ACAATAACAAAGTAAAAAAA+AGG | + | chr1_2:57447532-57447551 | None:intergenic | 15.0% |
| !!! | TGTGTATTTTATTTTATATC+TGG | - | chr1_2:57447707-57447726 | Msa0079540:intron | 15.0% |
| !! | TTTGTCTTATATTATACTTT+AGG | - | chr1_2:57447797-57447816 | Msa0079540:intron | 15.0% |
| !! | ACTAACTAATTAATATGAAA+TGG | - | chr1_2:57448240-57448259 | Msa0079540:intron | 15.0% |
| !! | TCACATTGTATTAACAAAAA+GGG | + | chr1_2:57444442-57444461 | None:intergenic | 20.0% |
| !! | TTCACATTGTATTAACAAAA+AGG | + | chr1_2:57444443-57444462 | None:intergenic | 20.0% |
| !! | AAATTAGAATCGATTATAAC+TGG | - | chr1_2:57444641-57444660 | Msa0079540:CDS | 20.0% |
| !! | AATTAGAATCGATTATAACT+GGG | - | chr1_2:57444642-57444661 | Msa0079540:CDS | 20.0% |
| !!! | TTTTGTGTTTTTAATGCAAA+GGG | - | chr1_2:57444735-57444754 | Msa0079540:CDS | 20.0% |
| !!! | AATTCAAACTTCTATGATTT+TGG | + | chr1_2:57444791-57444810 | None:intergenic | 20.0% |
| !!! | TTATTCTAAAAAGACGTTTA+TGG | + | chr1_2:57445036-57445055 | None:intergenic | 20.0% |
| !!! | ATTTTTTCGTATAGAAACTT+TGG | - | chr1_2:57445560-57445579 | Msa0079540:CDS | 20.0% |
| !! | ATCTCAATAAATTACTTAAC+AGG | + | chr1_2:57446387-57446406 | None:intergenic | 20.0% |
| !! | ACATTGATATAATTGCAATT+TGG | - | chr1_2:57446761-57446780 | Msa0079540:CDS | 20.0% |
| !!! | AACAAACTTTGAGAAAATTA+TGG | - | chr1_2:57447372-57447391 | Msa0079540:intron | 20.0% |
| !!! | GAAGTGTTTAGTAAAATTAT+CGG | - | chr1_2:57448213-57448232 | Msa0079540:intron | 20.0% |
| !! | TTATATGCTATATAAGCTAA+CGG | - | chr1_2:57448429-57448448 | Msa0079540:intron | 20.0% |
| !! | ATAGACTTTAATGTATAAGA+GGG | + | chr1_2:57449137-57449156 | None:intergenic | 20.0% |
| ! | CACATTGTATTAACAAAAAG+GGG | + | chr1_2:57444441-57444460 | None:intergenic | 25.0% |
| ! | CAAACACAAATCAAAATGAT+TGG | + | chr1_2:57444472-57444491 | None:intergenic | 25.0% |
| !!! | CAATCATTTTGATTTGTGTT+TGG | - | chr1_2:57444470-57444489 | Msa0079540:CDS | 25.0% |
| !!! | GTTGTTTTAATTTAGCTGAT+TGG | - | chr1_2:57444606-57444625 | Msa0079540:CDS | 25.0% |
| ! | ATTATAACTGGGAAAATAAC+TGG | - | chr1_2:57444653-57444672 | Msa0079540:CDS | 25.0% |
| ! | CATTCATGTTCTATGAATTT+AGG | + | chr1_2:57444710-57444729 | None:intergenic | 25.0% |
| !!! | CTTTTGTGTTTTTAATGCAA+AGG | - | chr1_2:57444734-57444753 | Msa0079540:CDS | 25.0% |
| ! | AAGATAATCAATCCGAATTT+CGG | + | chr1_2:57444986-57445005 | None:intergenic | 25.0% |
| ! | GATTATCTTATCCAAATGAA+AGG | - | chr1_2:57444997-57445016 | Msa0079540:intron | 25.0% |
| ! | AAAAAGAATAGTTTCACAAC+CGG | + | chr1_2:57445589-57445608 | None:intergenic | 25.0% |
| !! | TTTCATATTTTCTTAGTCCT+TGG | - | chr1_2:57445742-57445761 | Msa0079540:CDS | 25.0% |
| !!! | TATGATCCATTACTTTTACA+TGG | - | chr1_2:57445980-57445999 | Msa0079540:intron | 25.0% |
| ! | TTCAAACCATGTAAAAGTAA+TGG | + | chr1_2:57445989-57446008 | None:intergenic | 25.0% |
| ! | ATGTGAAAATATCAGCAAAA+TGG | + | chr1_2:57446030-57446049 | None:intergenic | 25.0% |
| ! | ACTTTCCTCATTTAATCTTT+CGG | + | chr1_2:57446233-57446252 | None:intergenic | 25.0% |
| !!! | GGTTGGTAAAAGAAAATAAA+CGG | + | chr1_2:57446366-57446385 | None:intergenic | 25.0% |
| ! | CAATAAATTACTTAACAGGT+TGG | + | chr1_2:57446383-57446402 | None:intergenic | 25.0% |
| ! | GTAATTTATTGAGATGCTTT+AGG | - | chr1_2:57446392-57446411 | Msa0079540:intron | 25.0% |
| ! | TATTTGACACAATTCAACAA+GGG | + | chr1_2:57446447-57446466 | None:intergenic | 25.0% |
| ! | ATATTTGACACAATTCAACA+AGG | + | chr1_2:57446448-57446467 | None:intergenic | 25.0% |
| ! | TCAAATATATCTATCTATGC+AGG | - | chr1_2:57446460-57446479 | Msa0079540:intron | 25.0% |
| ! | TCTTTATCTTGTAATATAGG+TGG | + | chr1_2:57446508-57446527 | None:intergenic | 25.0% |
| ! | GCATCTTTATCTTGTAATAT+AGG | + | chr1_2:57446511-57446530 | None:intergenic | 25.0% |
| !! | TAAAAAAAAAAGGTTCTAGC+AGG | + | chr1_2:57446981-57447000 | None:intergenic | 25.0% |
| !! | CTGCAAGTTGAAAAAAATTA+TGG | - | chr1_2:57447277-57447296 | Msa0079540:CDS | 25.0% |
| ! | TTGAGAAAATTATGGATTTG+AGG | - | chr1_2:57447380-57447399 | Msa0079540:intron | 25.0% |
| ! | TCTGATCTGTGAAAAAAATT+AGG | + | chr1_2:57447507-57447526 | None:intergenic | 25.0% |
| !!! | CTAATGACATCTATTTTTTC+AGG | - | chr1_2:57447606-57447625 | Msa0079540:intron | 25.0% |
| !! | CTTTCATTTTAAGCTCTATT+TGG | + | chr1_2:57448465-57448484 | None:intergenic | 25.0% |
| !! | TCCATGTTATTCTTTCTTTT+AGG | - | chr1_2:57448532-57448551 | Msa0079540:intron | 25.0% |
| ! | ACCTAAAAGAAAGAATAACA+TGG | + | chr1_2:57448536-57448555 | None:intergenic | 25.0% |
| !!! | TTCTTTCTTTTAGGTAAAGA+TGG | - | chr1_2:57448541-57448560 | Msa0079540:intron | 25.0% |
| ! | CATTGCAAATCAATTTAATG+AGG | - | chr1_2:57449053-57449072 | Msa0079540:CDS | 25.0% |
| ! | CATAGACTTTAATGTATAAG+AGG | + | chr1_2:57449138-57449157 | None:intergenic | 25.0% |
| ! | AAAGATCTTAAAGATACTAC+TGG | - | chr1_2:57449226-57449245 | Msa0079540:CDS | 25.0% |
| !! | TACTAGTTTGAAAAATTTCC+AGG | - | chr1_2:57449269-57449288 | Msa0079540:CDS | 25.0% |
| !! | CTATGATTTTGGAAGTGAAA+GGG | + | chr1_2:57444780-57444799 | None:intergenic | 30.0% |
| !! | TCTATGATTTTGGAAGTGAA+AGG | + | chr1_2:57444781-57444800 | None:intergenic | 30.0% |
| ! | TTCTTCTTTTAGTATTTCCC+TGG | - | chr1_2:57444836-57444855 | Msa0079540:CDS | 30.0% |
| GGCTTACAAATTCCTATTAA+CGG | + | chr1_2:57444904-57444923 | None:intergenic | 30.0% | |
| TTATCCAAATGAAAGGTCTT+TGG | - | chr1_2:57445004-57445023 | Msa0079540:intron | 30.0% | |
| GATAAGATTTCCAGAGAAAA+TGG | + | chr1_2:57445259-57445278 | None:intergenic | 30.0% | |
| CAAAGAAAAACGACATAAGA+AGG | - | chr1_2:57445347-57445366 | Msa0079540:intron | 30.0% | |
| !! | TTTCAAAGTACCGTATGTAT+TGG | - | chr1_2:57445477-57445496 | Msa0079540:CDS | 30.0% |
| AAGACCCAATATTTAGATCT+GGG | + | chr1_2:57445509-57445528 | None:intergenic | 30.0% | |
| TAAGACCCAATATTTAGATC+TGG | + | chr1_2:57445510-57445529 | None:intergenic | 30.0% | |
| AAAAGAATAGTTTCACAACC+GGG | + | chr1_2:57445588-57445607 | None:intergenic | 30.0% | |
| AATAGCCATAGTTATCAATG+CGG | + | chr1_2:57445861-57445880 | None:intergenic | 30.0% | |
| ATTGCACAAAATGAAGTGTA+GGG | + | chr1_2:57445939-57445958 | None:intergenic | 30.0% | |
| AATTGCACAAAATGAAGTGT+AGG | + | chr1_2:57445940-57445959 | None:intergenic | 30.0% | |
| AATATCAGCAAAATGGAAGA+TGG | + | chr1_2:57446023-57446042 | None:intergenic | 30.0% | |
| TGTTTCTTACTCATTGCAAT+AGG | - | chr1_2:57446076-57446095 | Msa0079540:intron | 30.0% | |
| GTTTCTTACTCATTGCAATA+GGG | - | chr1_2:57446077-57446096 | Msa0079540:intron | 30.0% | |
| TGATTCAAACCTTCAGAAAT+GGG | + | chr1_2:57446185-57446204 | None:intergenic | 30.0% | |
| TTGATTCAAACCTTCAGAAA+TGG | + | chr1_2:57446186-57446205 | None:intergenic | 30.0% | |
| GAAAACCGAAAGATTAAATG+AGG | - | chr1_2:57446225-57446244 | Msa0079540:intron | 30.0% | |
| ATTACAAGATAAAGATGCCA+AGG | - | chr1_2:57446513-57446532 | Msa0079540:intron | 30.0% | |
| AAAAAACCATTGTTGCCATT+AGG | - | chr1_2:57446572-57446591 | Msa0079540:intron | 30.0% | |
| AACAAACTTCTAAATCACTC+TGG | + | chr1_2:57446805-57446824 | None:intergenic | 30.0% | |
| CTTAAAAAATTGCAGCCAAT+CGG | - | chr1_2:57446877-57446896 | Msa0079540:CDS | 30.0% | |
| TATAAGATATTGACACCGAT+TGG | + | chr1_2:57446895-57446914 | None:intergenic | 30.0% | |
| ! | TTATGTGCAAACTGTTGATT+TGG | - | chr1_2:57446930-57446949 | Msa0079540:intron | 30.0% |
| TACAAAATGCAGTCAAATAG+CGG | - | chr1_2:57447105-57447124 | Msa0079540:intron | 30.0% | |
| TGAACATTCTAACTTCAAGA+GGG | + | chr1_2:57447221-57447240 | None:intergenic | 30.0% | |
| ATGAACATTCTAACTTCAAG+AGG | + | chr1_2:57447222-57447241 | None:intergenic | 30.0% | |
| !! | TTCCTTAGGTACTTTTTGTA+TGG | - | chr1_2:57447317-57447336 | Msa0079540:intron | 30.0% |
| !! | AACCATACAAAAAGTACCTA+AGG | + | chr1_2:57447322-57447341 | None:intergenic | 30.0% |
| TTATGGATTTGAGGAAATCA+TGG | - | chr1_2:57447389-57447408 | Msa0079540:intron | 30.0% | |
| ATTAGACATTGAACTAACCA+AGG | + | chr1_2:57447591-57447610 | None:intergenic | 30.0% | |
| ! | CTTTAGGTTTCACAATTAAG+AGG | - | chr1_2:57447813-57447832 | Msa0079540:intron | 30.0% |
| CAATGTAAATACATGAAGCA+GGG | + | chr1_2:57447954-57447973 | None:intergenic | 30.0% | |
| ! | AAAAACTGTGGCAAACATTT+TGG | - | chr1_2:57447981-57448000 | Msa0079540:intron | 30.0% |
| TCTTTCTAAACAAGTTCCTT+AGG | - | chr1_2:57448005-57448024 | Msa0079540:intron | 30.0% | |
| CTCTGTTAGGTAAAATATAG+CGG | - | chr1_2:57448117-57448136 | Msa0079540:intron | 30.0% | |
| ! | TAAGCTACTTGATAGCTTAT+AGG | - | chr1_2:57448148-57448167 | Msa0079540:intron | 30.0% |
| ! | AAGCTACTTGATAGCTTATA+GGG | - | chr1_2:57448149-57448168 | Msa0079540:intron | 30.0% |
| ! | ATTTTAAGCTCTATTTGGCA+AGG | + | chr1_2:57448460-57448479 | None:intergenic | 30.0% |
| ACAAATATCTGACATGTTTC+TGG | - | chr1_2:57448503-57448522 | Msa0079540:intron | 30.0% | |
| ATGATATGAGAGTCAACAAT+GGG | - | chr1_2:57448753-57448772 | Msa0079540:intron | 30.0% | |
| ACTTATTCCCTCAAAATGTT+TGG | - | chr1_2:57449159-57449178 | Msa0079540:CDS | 30.0% | |
| ! | GAATTTTATTGAAAGGGAGA+TGG | - | chr1_2:57449202-57449221 | Msa0079540:CDS | 30.0% |
| ! | AATCAAACAAACTTGTTTCC+TGG | + | chr1_2:57449290-57449309 | None:intergenic | 30.0% |
| GATTTGTGTTTGGATCTGTT+TGG | - | chr1_2:57444480-57444499 | Msa0079540:CDS | 35.0% | |
| ! | ATCTGTTTGGTTCATGTGTT+TGG | - | chr1_2:57444493-57444512 | Msa0079540:CDS | 35.0% |
| ! | TGGTTCATGTGTTTGGTAAT+TGG | - | chr1_2:57444500-57444519 | Msa0079540:CDS | 35.0% |
| ! | GGTTCATGTGTTTGGTAATT+GGG | - | chr1_2:57444501-57444520 | Msa0079540:CDS | 35.0% |
| ! | TATGGGTTCTGATATTCTTC+TGG | - | chr1_2:57444560-57444579 | Msa0079540:CDS | 35.0% |
| AGGGTAACCTTATAGTGAAT+TGG | - | chr1_2:57444754-57444773 | Msa0079540:CDS | 35.0% | |
| !!! | CCTTTGCTTTTTCTACTGAT+AGG | + | chr1_2:57444864-57444883 | None:intergenic | 35.0% |
| CCTATCAGTAGAAAAAGCAA+AGG | - | chr1_2:57444861-57444880 | Msa0079540:intron | 35.0% | |
| ATCAGTAGAAAAAGCAAAGG+AGG | - | chr1_2:57444864-57444883 | Msa0079540:intron | 35.0% | |
| AAAAAGCAAAGGAGGATTGA+TGG | - | chr1_2:57444872-57444891 | Msa0079540:intron | 35.0% | |
| CGCTTTCAAATCCACAAAAT+CGG | + | chr1_2:57445196-57445215 | None:intergenic | 35.0% | |
| ! | CGATTTTGTGGATTTGAAAG+CGG | - | chr1_2:57445194-57445213 | Msa0079540:intron | 35.0% |
| TCCAGAGAAAATGGTTAAAG+TGG | + | chr1_2:57445250-57445269 | None:intergenic | 35.0% | |
| AAAAACGACATAAGAAGGAG+AGG | - | chr1_2:57445352-57445371 | Msa0079540:intron | 35.0% | |
| ACATAAGAAGGAGAGGTAAT+GGG | - | chr1_2:57445359-57445378 | Msa0079540:intron | 35.0% | |
| ! | GCTTTGACTTATGAGAAACT+AGG | - | chr1_2:57445433-57445452 | Msa0079540:intron | 35.0% |
| ! | TACATACGGTACTTTGAAAG+AGG | + | chr1_2:57445476-57445495 | None:intergenic | 35.0% |
| TAGGCCCAGATCTAAATATT+GGG | - | chr1_2:57445502-57445521 | Msa0079540:CDS | 35.0% | |
| TAGTTATCAATGCGGAAATG+CGG | + | chr1_2:57445853-57445872 | None:intergenic | 35.0% | |
| ! | CATTTCCGCATTGATAACTA+TGG | - | chr1_2:57445853-57445872 | Msa0079540:intron | 35.0% |
| GATGACCAAAAGTAAAAGCA+AGG | + | chr1_2:57445898-57445917 | None:intergenic | 35.0% | |
| TCCTCTAATGCTACTAAAGT+TGG | - | chr1_2:57446152-57446171 | Msa0079540:intron | 35.0% | |
| TCCAACTTTAGTAGCATTAG+AGG | + | chr1_2:57446156-57446175 | None:intergenic | 35.0% | |
| ! | AGGAAAGTTGATCAGATCTA+TGG | - | chr1_2:57446245-57446264 | Msa0079540:intron | 35.0% |
| TCCACCTCTAAATTACTCAT+GGG | + | chr1_2:57446300-57446319 | None:intergenic | 35.0% | |
| ATCCACCTCTAAATTACTCA+TGG | + | chr1_2:57446301-57446320 | None:intergenic | 35.0% | |
| !!! | ACAATGGTTTTTTTCTGCAC+AGG | + | chr1_2:57446565-57446584 | None:intergenic | 35.0% |
| GACATATATGATTGACAGCA+CGG | - | chr1_2:57446651-57446670 | Msa0079540:intron | 35.0% | |
| ! | TTACTCGTTTTACGTCAGTA+GGG | + | chr1_2:57446678-57446697 | None:intergenic | 35.0% |
| !! | TTTTAAGTATGCCTGTCACT+TGG | + | chr1_2:57446864-57446883 | None:intergenic | 35.0% |
| TTGTTAGATAGCAGCTATAG+TGG | - | chr1_2:57447018-57447037 | Msa0079540:intron | 35.0% | |
| ! | GTTTGAAATGTTCTGAATCG+CGG | + | chr1_2:57447182-57447201 | None:intergenic | 35.0% |
| AAACTTAGACACGTTTCCTT+AGG | - | chr1_2:57447303-57447322 | Msa0079540:intron | 35.0% | |
| ! | TTTAACTGAGTTGGAAACAC+AGG | - | chr1_2:57447682-57447701 | Msa0079540:intron | 35.0% |
| CAACAGAAACATTGAAGAGA+GGG | + | chr1_2:57447744-57447763 | None:intergenic | 35.0% | |
| AAGAGGTGAAAATTCTACCT+TGG | - | chr1_2:57447830-57447849 | Msa0079540:intron | 35.0% | |
| TGTTGAAACGTTAAGAGCAA+AGG | - | chr1_2:57447923-57447942 | Msa0079540:intron | 35.0% | |
| GCAATGTAAATACATGAAGC+AGG | + | chr1_2:57447955-57447974 | None:intergenic | 35.0% | |
| CTTCATGTATTTACATTGCC+TGG | - | chr1_2:57447956-57447975 | Msa0079540:intron | 35.0% | |
| !!! | TTTTTTGTAAGCCAGACCTA+AGG | + | chr1_2:57448024-57448043 | None:intergenic | 35.0% |
| AACTAAATCAACGCTCTGTT+AGG | - | chr1_2:57448104-57448123 | Msa0079540:intron | 35.0% | |
| ! | GGGTATAAGCTAGTTGATAT+AGG | - | chr1_2:57448169-57448188 | Msa0079540:intron | 35.0% |
| TTCGTATCGTCAAAATTGAG+CGG | + | chr1_2:57448408-57448427 | None:intergenic | 35.0% | |
| !! | TATCTGACATGTTTCTGGTT+TGG | - | chr1_2:57448508-57448527 | Msa0079540:intron | 35.0% |
| ! | ATGAAACAATGGGTTCAATC+CGG | + | chr1_2:57448591-57448610 | None:intergenic | 35.0% |
| !! | GGTTGATAGAAATGATGATG+TGG | + | chr1_2:57448707-57448726 | None:intergenic | 35.0% |
| GGCATAGGATTAATAGATGT+GGG | + | chr1_2:57448728-57448747 | None:intergenic | 35.0% | |
| TGGCATAGGATTAATAGATG+TGG | + | chr1_2:57448729-57448748 | None:intergenic | 35.0% | |
| TTGACTCTCATATCATGACA+TGG | + | chr1_2:57448749-57448768 | None:intergenic | 35.0% | |
| CATGATATGAGAGTCAACAA+TGG | - | chr1_2:57448752-57448771 | Msa0079540:intron | 35.0% | |
| CAGTAAATTGCCATATCTTG+TGG | - | chr1_2:57448950-57448969 | Msa0079540:intron | 35.0% | |
| ACTAAAGCAACCACAAGATA+TGG | + | chr1_2:57448963-57448982 | None:intergenic | 35.0% | |
| GTCAAGAAGTTATTCTTGTC+TGG | - | chr1_2:57448981-57449000 | Msa0079540:intron | 35.0% | |
| ! | GCATGAACCAAACATTTTGA+GGG | + | chr1_2:57449169-57449188 | None:intergenic | 35.0% |
| ! | AAAATGTTTGGTTCATGCGA+GGG | - | chr1_2:57449171-57449190 | Msa0079540:CDS | 35.0% |
| ! | AGGGGGAGAATTTTATTGAA+AGG | - | chr1_2:57449195-57449214 | Msa0079540:CDS | 35.0% |
| ! | GGGGGAGAATTTTATTGAAA+GGG | - | chr1_2:57449196-57449215 | Msa0079540:CDS | 35.0% |
| CCGATATTCTTCGGAATCAA+CGG | + | chr1_2:57444349-57444368 | None:intergenic | 40.0% | |
| !! | CCGTTGATTCCGAAGAATAT+CGG | - | chr1_2:57444346-57444365 | Msa0079540:three_prime_UTR | 40.0% |
| !! | CGTTGATTCCGAAGAATATC+GGG | - | chr1_2:57444347-57444366 | Msa0079540:three_prime_UTR | 40.0% |
| TCTGAAGAGTAAGCTGAATC+AGG | - | chr1_2:57444374-57444393 | Msa0079540:three_prime_UTR | 40.0% | |
| AAGCAAAAATACCCGAGTCA+TGG | + | chr1_2:57444415-57444434 | None:intergenic | 40.0% | |
| GAAAGGGCCAATTCACTATA+AGG | + | chr1_2:57444764-57444783 | None:intergenic | 40.0% | |
| ! | TTTTCTACTGATAGGAGCCA+GGG | + | chr1_2:57444856-57444875 | None:intergenic | 40.0% |
| ! | TTTTTCTACTGATAGGAGCC+AGG | + | chr1_2:57444857-57444876 | None:intergenic | 40.0% |
| TGATGGCATGAACCGTTAAT+AGG | - | chr1_2:57444889-57444908 | Msa0079540:intron | 40.0% | |
| CTAATAGCTGTGCCGAAATT+CGG | - | chr1_2:57444971-57444990 | Msa0079540:intron | 40.0% | |
| TCCAAATGAAAGGTCTTTGG+TGG | - | chr1_2:57445007-57445026 | Msa0079540:intron | 40.0% | |
| TTTGTGGATTTGAAAGCGGA+TGG | - | chr1_2:57445198-57445217 | Msa0079540:intron | 40.0% | |
| !! | GCCACTTTAACCATTTTCTC+TGG | - | chr1_2:57445246-57445265 | Msa0079540:intron | 40.0% |
| GACATAAGAAGGAGAGGTAA+TGG | - | chr1_2:57445358-57445377 | Msa0079540:intron | 40.0% | |
| CATAAGAAGGAGAGGTAATG+GGG | - | chr1_2:57445360-57445379 | Msa0079540:intron | 40.0% | |
| ! | ATAAGAAGGAGAGGTAATGG+GGG | - | chr1_2:57445361-57445380 | Msa0079540:intron | 40.0% |
| GAAGAAGAAGAACTGCAGTA+AGG | - | chr1_2:57445405-57445424 | Msa0079540:intron | 40.0% | |
| CAATATTTAGATCTGGGCCT+AGG | + | chr1_2:57445503-57445522 | None:intergenic | 40.0% | |
| CTAGGCCCAGATCTAAATAT+TGG | - | chr1_2:57445501-57445520 | Msa0079540:CDS | 40.0% | |
| !! | CGTATAGAAACTTTGGAACC+CGG | - | chr1_2:57445567-57445586 | Msa0079540:CDS | 40.0% |
| !! | GTCCTCCTTGCTTTTACTTT+TGG | - | chr1_2:57445890-57445909 | Msa0079540:intron | 40.0% |
| GACCAAAAGTAAAAGCAAGG+AGG | + | chr1_2:57445895-57445914 | None:intergenic | 40.0% | |
| TTAGTAGCATTAGAGGACTG+TGG | + | chr1_2:57446149-57446168 | None:intergenic | 40.0% | |
| CCACCTCTAAATTACTCATG+GGG | + | chr1_2:57446299-57446318 | None:intergenic | 40.0% | |
| !!! | ATGGTTTTTTTCTGCACAGG+CGG | + | chr1_2:57446562-57446581 | None:intergenic | 40.0% |
| ! | CTTGATGATCCACTTGTTGA+TGG | + | chr1_2:57446598-57446617 | None:intergenic | 40.0% |
| ! | CTTACTCGTTTTACGTCAGT+AGG | + | chr1_2:57446679-57446698 | None:intergenic | 40.0% |
| CTACTGACGTAAAACGAGTA+AGG | - | chr1_2:57446677-57446696 | Msa0079540:intron | 40.0% | |
| ! | TGTCACTTGGTTCATTAAGC+AGG | + | chr1_2:57446851-57446870 | None:intergenic | 40.0% |
| TGCTTAATGAACCAAGTGAC+AGG | - | chr1_2:57446850-57446869 | Msa0079540:CDS | 40.0% | |
| !! | TATAGTGGTGCTATACTGCT+GGG | - | chr1_2:57447033-57447052 | Msa0079540:intron | 40.0% |
| TAAAATCCCGCTGCACAAAA+GGG | + | chr1_2:57447137-57447156 | None:intergenic | 40.0% | |
| TTAAAATCCCGCTGCACAAA+AGG | + | chr1_2:57447138-57447157 | None:intergenic | 40.0% | |
| ! | TTCCTTAGGTGCTTTTCGTA+CGG | + | chr1_2:57447426-57447445 | None:intergenic | 40.0% |
| AAACTTGGGTGCATTTCCTT+AGG | + | chr1_2:57447440-57447459 | None:intergenic | 40.0% | |
| ! | ACACTCATTTGTTCGACTTG+AGG | - | chr1_2:57447555-57447574 | Msa0079540:intron | 40.0% |
| CCAACAGAAACATTGAAGAG+AGG | + | chr1_2:57447745-57447764 | None:intergenic | 40.0% | |
| ! | CCTCTCTTCAATGTTTCTGT+TGG | - | chr1_2:57447742-57447761 | Msa0079540:intron | 40.0% |
| ATCAGTAAGACGCTTTACCA+AGG | + | chr1_2:57447850-57447869 | None:intergenic | 40.0% | |
| !! | CCAAAAGTACACTGATTCTG+CGG | - | chr1_2:57447875-57447894 | Msa0079540:intron | 40.0% |
| CATTGCCTGGTTAAAAACTG+TGG | - | chr1_2:57447969-57447988 | Msa0079540:intron | 40.0% | |
| ! | GTTTGCCACAGTTTTTAACC+AGG | + | chr1_2:57447977-57447996 | None:intergenic | 40.0% |
| CTAAACAAGTTCCTTAGGTC+TGG | - | chr1_2:57448010-57448029 | Msa0079540:intron | 40.0% | |
| ATCGTCAAAATTGAGCGGTT+TGG | + | chr1_2:57448403-57448422 | None:intergenic | 40.0% | |
| GAGACTGTGAAAAGAGTTAC+CGG | - | chr1_2:57448569-57448588 | Msa0079540:intron | 40.0% | |
| CAGGCATGACATGAAACAAT+GGG | + | chr1_2:57448601-57448620 | None:intergenic | 40.0% | |
| TCAGGCATGACATGAAACAA+TGG | + | chr1_2:57448602-57448621 | None:intergenic | 40.0% | |
| ATGCCTGACATGTCATCAAT+GGG | - | chr1_2:57448614-57448633 | Msa0079540:intron | 40.0% | |
| CTCATATCATGACATGGCAT+AGG | + | chr1_2:57448743-57448762 | None:intergenic | 40.0% | |
| TATGAGAGTCAACAATGGGT+TGG | - | chr1_2:57448757-57448776 | Msa0079540:intron | 40.0% | |
| ! | ATGAGAGTCAACAATGGGTT+GGG | - | chr1_2:57448758-57448777 | Msa0079540:intron | 40.0% |
| ATTTACTGCTCTCCATTAGG+AGG | + | chr1_2:57448938-57448957 | None:intergenic | 40.0% | |
| GCAATTTACTGCTCTCCATT+AGG | + | chr1_2:57448941-57448960 | None:intergenic | 40.0% | |
| ATTCCCCAAACGAAGATATG+GGG | + | chr1_2:57449106-57449125 | None:intergenic | 40.0% | |
| CATTCCCCAAACGAAGATAT+GGG | + | chr1_2:57449107-57449126 | None:intergenic | 40.0% | |
| ! | CGCATGAACCAAACATTTTG+AGG | + | chr1_2:57449170-57449189 | None:intergenic | 40.0% |
| ! | CAAAATGTTTGGTTCATGCG+AGG | - | chr1_2:57449170-57449189 | Msa0079540:CDS | 40.0% |
| ACAGAGGAAGAAGAAGGAGA+AGG | + | chr1_2:57444252-57444271 | None:intergenic | 45.0% | |
| TCAGCAACAGAGGAAGAAGA+AGG | + | chr1_2:57444258-57444277 | None:intergenic | 45.0% | |
| CAGAACAGCCCGATATTCTT+CGG | + | chr1_2:57444358-57444377 | None:intergenic | 45.0% | |
| GCCACCAAAGACCTTTCATT+TGG | + | chr1_2:57445011-57445030 | None:intergenic | 45.0% | |
| GAAGAAGAACTGCAGTAAGG+TGG | - | chr1_2:57445408-57445427 | Msa0079540:intron | 45.0% | |
| ! | ACGGTACTTTGAAAGAGGCT+AGG | + | chr1_2:57445471-57445490 | None:intergenic | 45.0% |
| ! | AGTACCGTATGTATTGGCCT+AGG | - | chr1_2:57445483-57445502 | Msa0079540:CDS | 45.0% |
| !! | CGGACACTATTTTAGAGACG+CGG | + | chr1_2:57445797-57445816 | None:intergenic | 45.0% |
| AACCAAAAATTGGTGCGGAG+CGG | + | chr1_2:57445817-57445836 | None:intergenic | 45.0% | |
| !!! | CTCCGCACCAATTTTTGGTT+TGG | - | chr1_2:57445817-57445836 | Msa0079540:intron | 45.0% |
| GGCCAAACCAAAAATTGGTG+CGG | + | chr1_2:57445822-57445841 | None:intergenic | 45.0% | |
| AATGAAGTGTAGGGTGGAGA+TGG | + | chr1_2:57445930-57445949 | None:intergenic | 45.0% | |
| GCACAAAATGAAGTGTAGGG+TGG | + | chr1_2:57445936-57445955 | None:intergenic | 45.0% | |
| CATTCTCAGGAAAAGTGGCT+AGG | + | chr1_2:57446124-57446143 | None:intergenic | 45.0% | |
| !!! | CTAGCCACTTTTCCTGAGAA+TGG | - | chr1_2:57446122-57446141 | Msa0079540:intron | 45.0% |
| TGGTCCATTCTCAGGAAAAG+TGG | + | chr1_2:57446129-57446148 | None:intergenic | 45.0% | |
| TGGCCCCATGAGTAATTTAG+AGG | - | chr1_2:57446293-57446312 | Msa0079540:intron | 45.0% | |
| CCCCATGAGTAATTTAGAGG+TGG | - | chr1_2:57446296-57446315 | Msa0079540:intron | 45.0% | |
| TATGCAGGATCTGTTCCTTC+TGG | - | chr1_2:57446475-57446494 | Msa0079540:intron | 45.0% | |
| !!! | TTTTTTCTGCACAGGCGGTA+TGG | + | chr1_2:57446557-57446576 | None:intergenic | 45.0% |
| TGATGGCCTAATGGCAACAA+TGG | + | chr1_2:57446581-57446600 | None:intergenic | 45.0% | |
| !! | TCCACTTGTTGATGGCCTAA+TGG | + | chr1_2:57446590-57446609 | None:intergenic | 45.0% |
| ! | TCTGATGATGACGAAGCTGA+GGG | - | chr1_2:57446625-57446644 | Msa0079540:intron | 45.0% |
| CTGACGTAAAACGAGTAAGG+AGG | - | chr1_2:57446680-57446699 | Msa0079540:intron | 45.0% | |
| !! | GTGCAAACTGTTGATTTGGC+TGG | - | chr1_2:57446934-57446953 | Msa0079540:intron | 45.0% |
| !! | CTATAGTGGTGCTATACTGC+TGG | - | chr1_2:57447032-57447051 | Msa0079540:intron | 45.0% |
| ! | GATATAGCCCTTTTGTGCAG+CGG | - | chr1_2:57447127-57447146 | Msa0079540:intron | 45.0% |
| ! | ATATAGCCCTTTTGTGCAGC+GGG | - | chr1_2:57447128-57447147 | Msa0079540:intron | 45.0% |
| ! | ATGTTCTGAATCGCGGATAG+CGG | + | chr1_2:57447175-57447194 | None:intergenic | 45.0% |
| !! | AACCGTACGAAAAGCACCTA+AGG | - | chr1_2:57447421-57447440 | Msa0079540:intron | 45.0% |
| CTTGAGGACTCTTTCTACCT+TGG | - | chr1_2:57447571-57447590 | Msa0079540:intron | 45.0% | |
| TTTCCAATAGAGAGTCAGCC+AGG | - | chr1_2:57447633-57447652 | Msa0079540:intron | 45.0% | |
| GCAGGCTCATTTAACTGAGT+TGG | - | chr1_2:57447673-57447692 | Msa0079540:intron | 45.0% | |
| ! | CCGCAGAATCAGTGTACTTT+TGG | + | chr1_2:57447878-57447897 | None:intergenic | 45.0% |
| CATGCCTGACATGTCATCAA+TGG | - | chr1_2:57448613-57448632 | Msa0079540:intron | 45.0% | |
| TGCCTGACATGTCATCAATG+GGG | - | chr1_2:57448615-57448634 | Msa0079540:intron | 45.0% | |
| ! | ATCCCCATTGATGACATGTC+AGG | + | chr1_2:57448620-57448639 | None:intergenic | 45.0% |
| CATCTGCTGAATTGTCTGAG+GGG | + | chr1_2:57448661-57448680 | None:intergenic | 45.0% | |
| GCATCTGCTGAATTGTCTGA+GGG | + | chr1_2:57448662-57448681 | None:intergenic | 45.0% | |
| TGCATCTGCTGAATTGTCTG+AGG | + | chr1_2:57448663-57448682 | None:intergenic | 45.0% | |
| CCTACAACTGCTGCATTGTT+TGG | + | chr1_2:57448812-57448831 | None:intergenic | 45.0% | |
| CCAAACAATGCAGCAGTTGT+AGG | - | chr1_2:57448809-57448828 | Msa0079540:intron | 45.0% | |
| AACAATGCAGCAGTTGTAGG+TGG | - | chr1_2:57448812-57448831 | Msa0079540:intron | 45.0% | |
| ACAATGCAGCAGTTGTAGGT+GGG | - | chr1_2:57448813-57448832 | Msa0079540:intron | 45.0% | |
| AGTTGTAGGTGGGAACAAGA+TGG | - | chr1_2:57448823-57448842 | Msa0079540:intron | 45.0% | |
| GTTGTAGGTGGGAACAAGAT+GGG | - | chr1_2:57448824-57448843 | Msa0079540:intron | 45.0% | |
| GCTTGGAACATCTTCAGAAG+CGG | - | chr1_2:57448879-57448898 | Msa0079540:intron | 45.0% | |
| TGCACCCCATATCTTCGTTT+GGG | - | chr1_2:57449099-57449118 | Msa0079540:intron | 45.0% | |
| GCATTCCCCAAACGAAGATA+TGG | + | chr1_2:57449108-57449127 | None:intergenic | 45.0% | |
| ACGAAATCCCCGACAACCTA+TGG | - | chr1_2:57444121-57444140 | Msa0079540:three_prime_UTR | 50.0% | |
| CATGAATCTGCGGTGACCAT+AGG | + | chr1_2:57444140-57444159 | None:intergenic | 50.0% | |
| TCACCGCAGATTCATGTCAC+CGG | - | chr1_2:57444144-57444163 | Msa0079540:three_prime_UTR | 50.0% | |
| CATCTTGGAGGATTCATCGC+CGG | + | chr1_2:57444175-57444194 | None:intergenic | 50.0% | |
| !! | AAAGCGTTGGAACGCCCATT+CGG | + | chr1_2:57444211-57444230 | None:intergenic | 50.0% |
| ! | CAGCTTCTTGCAGAAAGCGT+TGG | + | chr1_2:57444224-57444243 | None:intergenic | 50.0% |
| GGAAGAAGAAGGAGAAGGTG+TGG | + | chr1_2:57444247-57444266 | None:intergenic | 50.0% | |
| TCCTCTGTTGCTGACAACAC+CGG | - | chr1_2:57444264-57444283 | Msa0079540:three_prime_UTR | 50.0% | |
| !! | ACCGTCTTTTGGTGCAGCAT+CGG | + | chr1_2:57444295-57444314 | None:intergenic | 50.0% |
| AGGTGGTCCATTGGGCAAAA+CGG | + | chr1_2:57444319-57444338 | None:intergenic | 50.0% | |
| GGATTTGAAAGCGGATGGAG+CGG | - | chr1_2:57445203-57445222 | Msa0079540:intron | 50.0% | |
| GATTTGAAAGCGGATGGAGC+GGG | - | chr1_2:57445204-57445223 | Msa0079540:intron | 50.0% | |
| AATGGTTAAAGTGGCCGCTC+CGG | + | chr1_2:57445241-57445260 | None:intergenic | 50.0% | |
| GAAGAACTGCAGTAAGGTGG+TGG | - | chr1_2:57445411-57445430 | Msa0079540:intron | 50.0% | |
| TGGGCCTAGGCCAATACATA+CGG | + | chr1_2:57445490-57445509 | None:intergenic | 50.0% | |
| GGCACGGCCAAACCAAAAAT+TGG | + | chr1_2:57445827-57445846 | None:intergenic | 50.0% | |
| GGATCTCAGCCCATTTCTGA+AGG | - | chr1_2:57446173-57446192 | Msa0079540:intron | 50.0% | |
| ATAGGTGGATCGCTTCCAGA+AGG | + | chr1_2:57446493-57446512 | None:intergenic | 50.0% | |
| GCCATTAGGCCATCAACAAG+TGG | - | chr1_2:57446586-57446605 | Msa0079540:intron | 50.0% | |
| ! | GTCTGATGATGACGAAGCTG+AGG | - | chr1_2:57446624-57446643 | Msa0079540:intron | 50.0% |
| TGGTTCATTAAGCAGGAGCG+AGG | + | chr1_2:57446844-57446863 | None:intergenic | 50.0% | |
| TGCTATACTGCTGGGTGTAG+CGG | - | chr1_2:57447041-57447060 | Msa0079540:intron | 50.0% | |
| ! | TGTTCTGAATCGCGGATAGC+GGG | + | chr1_2:57447174-57447193 | None:intergenic | 50.0% |
| CTTTCTTCTTCTTGAGCGCC+TGG | + | chr1_2:57447654-57447673 | None:intergenic | 50.0% | |
| GCGCTCAAGAAGAAGAAAGC+AGG | - | chr1_2:57447655-57447674 | Msa0079540:intron | 50.0% | |
| ATGGGGATGCCAGCATTTGA+TGG | - | chr1_2:57448632-57448651 | Msa0079540:intron | 50.0% | |
| TGATGTGGATCGTCTTGCAC+AGG | + | chr1_2:57448692-57448711 | None:intergenic | 50.0% | |
| ! | CATCTTCAGAAGCGGATTCG+TGG | - | chr1_2:57448887-57448906 | Msa0079540:intron | 50.0% |
| TCTTGTGGACCTCCTCCTAA+TGG | - | chr1_2:57448923-57448942 | Msa0079540:intron | 50.0% | |
| TACTGCTCTCCATTAGGAGG+AGG | + | chr1_2:57448935-57448954 | None:intergenic | 50.0% | |
| GTGCACCCCATATCTTCGTT+TGG | - | chr1_2:57449098-57449117 | Msa0079540:intron | 50.0% | |
| GCACCCCATATCTTCGTTTG+GGG | - | chr1_2:57449100-57449119 | Msa0079540:intron | 50.0% | |
| ! | TGTTTGGTTCATGCGAGGGA+AGG | - | chr1_2:57449175-57449194 | Msa0079540:CDS | 50.0% |
| ! | GTTTGGTTCATGCGAGGGAA+GGG | - | chr1_2:57449176-57449195 | Msa0079540:CDS | 50.0% |
| ! | TTTGGTTCATGCGAGGGAAG+GGG | - | chr1_2:57449177-57449196 | Msa0079540:CDS | 50.0% |
| TGCGGTGACCATAGGTTGTC+GGG | + | chr1_2:57444132-57444151 | None:intergenic | 55.0% | |
| CTGCGGTGACCATAGGTTGT+CGG | + | chr1_2:57444133-57444152 | None:intergenic | 55.0% | |
| !! | ACCGGTGTTGTCAGCAACAG+AGG | + | chr1_2:57444268-57444287 | None:intergenic | 55.0% |
| !! | TGGTGCAGCATCGGCAAAAC+CGG | + | chr1_2:57444286-57444305 | None:intergenic | 55.0% |
| GCCGATGCTGCACCAAAAGA+CGG | - | chr1_2:57444291-57444310 | Msa0079540:three_prime_UTR | 55.0% | |
| ! | GGCAAAACGGCACCGTCTTT+TGG | + | chr1_2:57444306-57444325 | None:intergenic | 55.0% |
| TCTTCGGAATCAACGGCCAG+CGG | + | chr1_2:57444342-57444361 | None:intergenic | 55.0% | |
| GCCTGTAGCAGCTGCTATTG+CGG | - | chr1_2:57445095-57445114 | Msa0079540:intron | 55.0% | |
| ACCGCAATAGCAGCTGCTAC+AGG | + | chr1_2:57445099-57445118 | None:intergenic | 55.0% | |
| TAGCAGCTGCTATTGCGGTG+CGG | - | chr1_2:57445100-57445119 | Msa0079540:intron | 55.0% | |
| !! | AGGAGAGGTAATGGGGGAGA+AGG | - | chr1_2:57445367-57445386 | Msa0079540:intron | 55.0% |
| ! | GTCCGCTCCGCACCAATTTT+TGG | - | chr1_2:57445812-57445831 | Msa0079540:intron | 55.0% |
| ATCAATGCGGAAATGCGGCG+AGG | + | chr1_2:57445848-57445867 | None:intergenic | 55.0% | |
| GAGGACTGTGGTCCATTCTC+AGG | + | chr1_2:57446137-57446156 | None:intergenic | 55.0% | |
| TCTGCACAGGCGGTATGGAA+GGG | + | chr1_2:57446552-57446571 | None:intergenic | 55.0% | |
| TTCTGCACAGGCGGTATGGA+AGG | + | chr1_2:57446553-57446572 | None:intergenic | 55.0% | |
| GAGGGGCTTCCATCAAATGC+TGG | + | chr1_2:57448644-57448663 | None:intergenic | 55.0% | |
| AAACAGCTCCTCCGTTGCAC+CGG | - | chr1_2:57448849-57448868 | Msa0079540:intron | 55.0% | |
| GATGTTCCAAGCTAGCCACC+CGG | + | chr1_2:57448871-57448890 | None:intergenic | 55.0% | |
| ! | CTTCAGAAGCGGATTCGTGG+TGG | - | chr1_2:57448890-57448909 | Msa0079540:intron | 55.0% |
| TTGGTTCATGCGAGGGAAGG+GGG | - | chr1_2:57449178-57449197 | Msa0079540:CDS | 55.0% | |
| GCGGTGACCATAGGTTGTCG+GGG | + | chr1_2:57444131-57444150 | None:intergenic | 60.0% | |
| CCGCCGGTGACATGAATCTG+CGG | + | chr1_2:57444150-57444169 | None:intergenic | 60.0% | |
| CCGCAGATTCATGTCACCGG+CGG | - | chr1_2:57444147-57444166 | Msa0079540:three_prime_UTR | 60.0% | |
| AGCGCTGCGACTCATCTTGG+AGG | + | chr1_2:57444187-57444206 | None:intergenic | 60.0% | |
| !! | GGAAGCGCTGCGACTCATCT+TGG | + | chr1_2:57444190-57444209 | None:intergenic | 60.0% |
| TGAGTCGCAGCGCTTCCGAA+TGG | - | chr1_2:57444193-57444212 | Msa0079540:three_prime_UTR | 60.0% | |
| GAGTCGCAGCGCTTCCGAAT+GGG | - | chr1_2:57444194-57444213 | Msa0079540:three_prime_UTR | 60.0% | |
| !!! | GACGGTGCCGTTTTGCCCAA+TGG | - | chr1_2:57444309-57444328 | Msa0079540:three_prime_UTR | 60.0% |
| TCTGACACGGATGGGTGTGG+TGG | + | chr1_2:57445142-57445161 | None:intergenic | 60.0% | |
| CACACCCATCCGTGTCAGAG+CGG | - | chr1_2:57445143-57445162 | Msa0079540:intron | 60.0% | |
| ! | TGTGCCGCTCTGACACGGAT+GGG | + | chr1_2:57445150-57445169 | None:intergenic | 60.0% |
| ! | CTGACTGTGCCGCTCTGACA+CGG | + | chr1_2:57445155-57445174 | None:intergenic | 60.0% |
| !! | GGTTGGTGCGGCCGATTTTG+TGG | - | chr1_2:57445182-57445201 | Msa0079540:intron | 60.0% |
| GGATGGAGCGGGTATGAAGC+AGG | - | chr1_2:57445215-57445234 | Msa0079540:intron | 60.0% | |
| AGGGATCGCAGGTGGTACCT+TGG | + | chr1_2:57446533-57446552 | None:intergenic | 60.0% | |
| GGTATGGAAGGGATCGCAGG+TGG | + | chr1_2:57446541-57446560 | None:intergenic | 60.0% | |
| ! | GCGCCTGGCTGACTCTCTAT+TGG | + | chr1_2:57447639-57447658 | None:intergenic | 60.0% |
| AACAGCTCCTCCGTTGCACC+GGG | - | chr1_2:57448850-57448869 | Msa0079540:intron | 60.0% | |
| AAGCTAGCCACCCGGTGCAA+CGG | + | chr1_2:57448863-57448882 | None:intergenic | 60.0% | |
| ! | CAGAAGCGGATTCGTGGTGG+CGG | - | chr1_2:57448893-57448912 | Msa0079540:intron | 60.0% |
| !! | GGTGGCGGTGTCGATTCTTG+TGG | - | chr1_2:57448908-57448927 | Msa0079540:intron | 60.0% |
| ATTCATGTCACCGGCGGCGC+CGG | - | chr1_2:57444153-57444172 | Msa0079540:three_prime_UTR | 65.0% | |
| GCCAGCGGAGGTGGTCCATT+GGG | + | chr1_2:57444327-57444346 | None:intergenic | 65.0% | |
| GAATCAACGGCCAGCGGAGG+TGG | + | chr1_2:57444336-57444355 | None:intergenic | 65.0% | |
| TCGGAATCAACGGCCAGCGG+AGG | + | chr1_2:57444339-57444358 | None:intergenic | 65.0% | |
| GCTGAATCAGGCGTGCGCTG+CGG | - | chr1_2:57444386-57444405 | Msa0079540:three_prime_UTR | 65.0% | |
| GCGCTGCGGTTGCCATGACT+CGG | - | chr1_2:57444400-57444419 | Msa0079540:three_prime_UTR | 65.0% | |
| CGCTGCGGTTGCCATGACTC+GGG | - | chr1_2:57444401-57444420 | Msa0079540:three_prime_UTR | 65.0% | |
| GGTGCGGCGCGGAAAAAGTG+AGG | - | chr1_2:57445116-57445135 | Msa0079540:intron | 65.0% | |
| CGCTCTGACACGGATGGGTG+TGG | + | chr1_2:57445145-57445164 | None:intergenic | 65.0% | |
| ! | CTGTGCCGCTCTGACACGGA+TGG | + | chr1_2:57445151-57445170 | None:intergenic | 65.0% |
| CGTGTCAGAGCGGCACAGTC+AGG | - | chr1_2:57445153-57445172 | Msa0079540:intron | 65.0% | |
| GTCAGAGCGGCACAGTCAGG+TGG | - | chr1_2:57445156-57445175 | Msa0079540:intron | 65.0% | |
| AGCGGCACAGTCAGGTGGTG+CGG | - | chr1_2:57445161-57445180 | Msa0079540:intron | 65.0% | |
| GCACAGTCAGGTGGTGCGGT+TGG | - | chr1_2:57445165-57445184 | Msa0079540:intron | 65.0% | |
| ! | GTCAGGTGGTGCGGTTGGTG+CGG | - | chr1_2:57445170-57445189 | Msa0079540:intron | 65.0% |
| GGAGCGGGTATGAAGCAGGC+CGG | - | chr1_2:57445219-57445238 | Msa0079540:intron | 65.0% | |
| GGGTATGAAGCAGGCCGGAG+CGG | - | chr1_2:57445224-57445243 | Msa0079540:intron | 65.0% | |
| TGCGGAAATGCGGCGAGGCA+CGG | + | chr1_2:57445843-57445862 | None:intergenic | 65.0% | |
| GGCGGTATGGAAGGGATCGC+AGG | + | chr1_2:57446544-57446563 | None:intergenic | 65.0% | |
| ! | GTTGCACCGGGTGGCTAGCT+TGG | - | chr1_2:57448862-57448881 | Msa0079540:intron | 65.0% |
| GCCCAATGGACCACCTCCGC+TGG | - | chr1_2:57444323-57444342 | Msa0079540:three_prime_UTR | 70.0% | |
| GGCCAGCGGAGGTGGTCCAT+TGG | + | chr1_2:57444328-57444347 | None:intergenic | 70.0% | |
| GCTGCTATTGCGGTGCGGCG+CGG | - | chr1_2:57445105-57445124 | Msa0079540:intron | 70.0% | |
| AGCTCCTCCGTTGCACCGGG+TGG | - | chr1_2:57448853-57448872 | Msa0079540:intron | 70.0% | |
| CTAGCCACCCGGTGCAACGG+AGG | + | chr1_2:57448860-57448879 | None:intergenic | 70.0% | |
| GGATTCATCGCCGGCGCCGC+CGG | + | chr1_2:57444166-57444185 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 57444099 | 57449313 | 57444099 | ID=Msa0079540;Name=Msa0079540 |
| chr1_2 | mRNA | 57444099 | 57449313 | 57444099 | ID=Msa0079540-mRNA-1;Parent=Msa0079540;Name=Msa0079540-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0.83|0.71|1|0.66|0.71|7|358|406 |
| chr1_2 | exon | 57444099 | 57444858 | 57444099 | ID=Msa0079540-mRNA-1:exon:18184;Parent=Msa0079540-mRNA-1 |
| chr1_2 | exon | 57445468 | 57445593 | 57445468 | ID=Msa0079540-mRNA-1:exon:18183;Parent=Msa0079540-mRNA-1 |
| chr1_2 | exon | 57445709 | 57445784 | 57445709 | ID=Msa0079540-mRNA-1:exon:18182;Parent=Msa0079540-mRNA-1 |
| chr1_2 | exon | 57446711 | 57446930 | 57446711 | ID=Msa0079540-mRNA-1:exon:18181;Parent=Msa0079540-mRNA-1 |
| chr1_2 | exon | 57447218 | 57447314 | 57447218 | ID=Msa0079540-mRNA-1:exon:18180;Parent=Msa0079540-mRNA-1 |
| chr1_2 | exon | 57448990 | 57449102 | 57448990 | ID=Msa0079540-mRNA-1:exon:18179;Parent=Msa0079540-mRNA-1 |
| chr1_2 | exon | 57449127 | 57449313 | 57449127 | ID=Msa0079540-mRNA-1:exon:18178;Parent=Msa0079540-mRNA-1 |
| chr1_2 | CDS | 57449127 | 57449313 | 57449127 | ID=Msa0079540-mRNA-1:cds;Parent=Msa0079540-mRNA-1 |
| chr1_2 | CDS | 57448990 | 57449102 | 57448990 | ID=Msa0079540-mRNA-1:cds;Parent=Msa0079540-mRNA-1 |
| chr1_2 | CDS | 57447218 | 57447314 | 57447218 | ID=Msa0079540-mRNA-1:cds;Parent=Msa0079540-mRNA-1 |
| chr1_2 | CDS | 57446711 | 57446930 | 57446711 | ID=Msa0079540-mRNA-1:cds;Parent=Msa0079540-mRNA-1 |
| chr1_2 | CDS | 57445709 | 57445784 | 57445709 | ID=Msa0079540-mRNA-1:cds;Parent=Msa0079540-mRNA-1 |
| chr1_2 | CDS | 57445468 | 57445593 | 57445468 | ID=Msa0079540-mRNA-1:cds;Parent=Msa0079540-mRNA-1 |
| chr1_2 | CDS | 57444457 | 57444858 | 57444457 | ID=Msa0079540-mRNA-1:cds;Parent=Msa0079540-mRNA-1 |
| chr1_2 | three_prime_UTR | 57444099 | 57444456 | 57444099 | ID=Msa0079540-mRNA-1:three_prime_utr;Parent=Msa0079540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
