Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0079620 | sp|F4K5T4|STKLU_ARATH | 34.085 | 355 | 156 | 14 | 277 | 557 | 72 | 422 | 3.38e-40 | 154 |
| Msa0079620 | sp|F4K5T4|STKLU_ARATH | 31.193 | 218 | 119 | 7 | 8 | 196 | 39 | 254 | 9.25e-16 | 83.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0079620 | G7I7E5 | 90.831 | 349 | 31 | 1 | 212 | 560 | 28 | 375 | 0.0 | 614 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0079620 | TF | GeBP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0079620 | MtrunA17_Chr1g0191011 | 90.831 | 349 | 31 | 1 | 212 | 560 | 28 | 375 | 0.0 | 614 |
| Msa0079620 | MtrunA17_Chr1g0191011 | 29.221 | 154 | 69 | 5 | 23 | 139 | 53 | 203 | 9.09e-11 | 63.9 |
| Msa0079620 | MtrunA17_Chr1g0191021 | 56.134 | 269 | 51 | 6 | 1 | 203 | 1 | 268 | 5.48e-64 | 214 |
| Msa0079620 | MtrunA17_Chr1g0191021 | 32.249 | 338 | 171 | 11 | 265 | 556 | 45 | 370 | 2.60e-39 | 147 |
| Msa0079620 | MtrunA17_Chr7g0273821 | 44.444 | 171 | 76 | 7 | 256 | 413 | 42 | 206 | 1.52e-27 | 115 |
| Msa0079620 | MtrunA17_Chr7g0273821 | 52.439 | 82 | 28 | 1 | 77 | 147 | 106 | 187 | 4.52e-19 | 90.1 |
| Msa0079620 | MtrunA17_Chr7g0273821 | 36.842 | 114 | 53 | 4 | 461 | 557 | 323 | 434 | 2.23e-11 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0079620 | AT5G28040.2 | 34.085 | 355 | 156 | 14 | 277 | 557 | 72 | 422 | 3.43e-41 | 154 |
| Msa0079620 | AT5G28040.2 | 31.193 | 218 | 119 | 7 | 8 | 196 | 39 | 254 | 9.41e-17 | 83.2 |
| Msa0079620 | AT5G28040.1 | 34.085 | 355 | 156 | 14 | 277 | 557 | 72 | 422 | 3.43e-41 | 154 |
| Msa0079620 | AT5G28040.1 | 31.193 | 218 | 119 | 7 | 8 | 196 | 39 | 254 | 9.41e-17 | 83.2 |
| Msa0079620 | AT3G04930.2 | 37.158 | 183 | 88 | 7 | 261 | 424 | 78 | 252 | 2.03e-25 | 108 |
| Msa0079620 | AT3G04930.2 | 39.062 | 128 | 47 | 5 | 49 | 147 | 91 | 216 | 9.32e-15 | 76.6 |
| Msa0079620 | AT3G04930.1 | 37.158 | 183 | 88 | 7 | 261 | 424 | 78 | 252 | 3.90e-25 | 108 |
| Msa0079620 | AT3G04930.1 | 39.062 | 128 | 47 | 5 | 49 | 147 | 91 | 216 | 1.07e-14 | 77.0 |
| Msa0079620 | AT1G11510.1 | 35.606 | 132 | 69 | 4 | 292 | 413 | 105 | 230 | 1.05e-12 | 70.1 |
| Msa0079620 | AT1G11510.2 | 39.394 | 99 | 53 | 2 | 316 | 413 | 109 | 201 | 1.27e-12 | 69.7 |
| Msa0079620 | AT1G61730.1 | 30.496 | 141 | 89 | 4 | 272 | 412 | 114 | 245 | 8.41e-12 | 67.4 |
Find 129 sgRNAs with CRISPR-Local
Find 261 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAGTCAAATGAGCTGAATT+AGG | 0.164142 | 1_2:+57557024 | None:intergenic |
| GTTGAATTCCACGCTGAATT+TGG | 0.173148 | 1_2:+57554711 | None:intergenic |
| TCGAAATTTCCCACAAGATT+TGG | 0.203495 | 1_2:-57554576 | Msa0079620:CDS |
| CGAAATTTCCCACAAGATTT+GGG | 0.213735 | 1_2:-57554575 | Msa0079620:CDS |
| GTTCTTCAGAAATTTGATTT+TGG | 0.217094 | 1_2:-57557183 | Msa0079620:intron |
| CTGAATTAGGGTTAGGGTTT+GGG | 0.227113 | 1_2:+57557037 | None:intergenic |
| CTTGTGGGAAATTTCGAAAA+TGG | 0.256771 | 1_2:+57554582 | None:intergenic |
| AGAAGTTACGTAGGTTAAAA+AGG | 0.283260 | 1_2:-57554672 | Msa0079620:CDS |
| TCAATAAGATCAGGACTTTC+AGG | 0.284560 | 1_2:+57554502 | None:intergenic |
| TGAACTGTTGAAGGGATATC+TGG | 0.305389 | 1_2:-57554809 | Msa0079620:CDS |
| ACCATTGTTGAAGGACCTAT+TGG | 0.311289 | 1_2:-57554305 | Msa0079620:CDS |
| GGTGGGGATGGCGGCGGTGG+TGG | 0.311939 | 1_2:+57557512 | None:intergenic |
| GACAATCATCATAACAATTC+AGG | 0.333260 | 1_2:-57556928 | Msa0079620:CDS |
| ATGGTTAAAACGGAGGATTT+TGG | 0.338805 | 1_2:-57554212 | Msa0079620:CDS |
| TGACACCGACCATGACGTTT+TGG | 0.344618 | 1_2:-57554548 | Msa0079620:CDS |
| TAGTCAAATGAGCTGAATTA+GGG | 0.344910 | 1_2:+57557025 | None:intergenic |
| GCTGAATTAGGGTTAGGGTT+TGG | 0.352389 | 1_2:+57557036 | None:intergenic |
| AAATGAGCTGAATTAGGGTT+AGG | 0.355729 | 1_2:+57557030 | None:intergenic |
| ATTGTGAAGAAACAGATAAA+AGG | 0.357039 | 1_2:-57554447 | Msa0079620:CDS |
| GGTGGTGGGGATGGCGGCGG+TGG | 0.357766 | 1_2:+57557509 | None:intergenic |
| TGGTCTTCATCCACATTGTA+TGG | 0.361996 | 1_2:+57555048 | None:intergenic |
| GCCATGGCCACCGTCACAAC+GGG | 0.369780 | 1_2:+57554982 | None:intergenic |
| GACGCACTGGGTGGCTCTAC+TGG | 0.372415 | 1_2:+57554274 | None:intergenic |
| CCAAGAGCTAGCTTGTTGAT+AGG | 0.374250 | 1_2:-57557236 | Msa0079620:intron |
| TATCATCCACATTGTCCATT+TGG | 0.374861 | 1_2:+57555094 | None:intergenic |
| GATGGTGGTGGTGGGGATGG+CGG | 0.384453 | 1_2:+57557503 | None:intergenic |
| CATTGTATGGACATAGAAAA+TGG | 0.389529 | 1_2:+57555061 | None:intergenic |
| TGGTGAGAAACAAGACTTCA+TGG | 0.394662 | 1_2:+57554324 | None:intergenic |
| TTTGTTGTTGCGACAGTGTT+TGG | 0.408607 | 1_2:+57557471 | None:intergenic |
| GGTGGTGGTGGGGATGGCGG+CGG | 0.408851 | 1_2:+57557506 | None:intergenic |
| GCCGTGTTTGTGTCATCTGC+GGG | 0.417687 | 1_2:+57554955 | None:intergenic |
| TCGAGGTATTCATCATGGTT+GGG | 0.429142 | 1_2:+57557636 | None:intergenic |
| TTGTTTCTCACCATTGTTGA+AGG | 0.430888 | 1_2:-57554314 | Msa0079620:CDS |
| TAGTAGCATTGCCATTGTTC+CGG | 0.431642 | 1_2:+57554371 | None:intergenic |
| TGAGGGATCTTGAAAGAAAT+CGG | 0.433564 | 1_2:+57554613 | None:intergenic |
| TAAGGCTAAGATGGTGGTGG+TGG | 0.435670 | 1_2:+57557494 | None:intergenic |
| GATGGCGGCGGTGGTGGCGA+AGG | 0.446129 | 1_2:+57557518 | None:intergenic |
| TAACAACATCGGCGACGCAC+TGG | 0.453222 | 1_2:+57554261 | None:intergenic |
| AGATCAGGACTTTCAGGAAC+AGG | 0.454735 | 1_2:+57554508 | None:intergenic |
| TAAGATGGTGGTGGTGGGGA+TGG | 0.456797 | 1_2:+57557500 | None:intergenic |
| CAATGGGAATGTTGTCCATT+TGG | 0.457011 | 1_2:+57555028 | None:intergenic |
| CCCCGTTGTGACGGTGGCCA+TGG | 0.457760 | 1_2:-57554983 | Msa0079620:CDS |
| TCGCCGATGTTGTTATCGAC+AGG | 0.458917 | 1_2:-57554253 | Msa0079620:CDS |
| TCTTCTTATCATAACGGTAC+TGG | 0.467633 | 1_2:-57557303 | Msa0079620:CDS |
| TGACAATGTTGAAGACCAAA+TGG | 0.469140 | 1_2:-57555109 | Msa0079620:CDS |
| AATTCAGCGTGGAATTCAAC+AGG | 0.472407 | 1_2:-57554708 | Msa0079620:CDS |
| TATTGACAATGTTAAGATGA+AGG | 0.472539 | 1_2:-57554485 | Msa0079620:CDS |
| ATCGTTCTATGATCAAATTA+AGG | 0.476693 | 1_2:-57557280 | Msa0079620:intron |
| AATGAGCTGAATTAGGGTTA+GGG | 0.478935 | 1_2:+57557031 | None:intergenic |
| CTACTGGAACATCATCCAAT+AGG | 0.479253 | 1_2:+57554290 | None:intergenic |
| AGTGGTAGTAGCCGCGGTGG+TGG | 0.484827 | 1_2:+57554921 | None:intergenic |
| TCAGAAACGGCAAGTGCAAT+GGG | 0.486716 | 1_2:+57555012 | None:intergenic |
| AAGGCTAAGATGGTGGTGGT+GGG | 0.486971 | 1_2:+57557495 | None:intergenic |
| GGACGAGATTGAACTGTTGA+AGG | 0.488252 | 1_2:-57554818 | Msa0079620:CDS |
| TTGTGAAGAAACAGATAAAA+GGG | 0.492865 | 1_2:-57554446 | Msa0079620:CDS |
| AAGGAAACACAAGATGACTT+TGG | 0.497734 | 1_2:-57554653 | Msa0079620:CDS |
| CAATGTGGATGAAGACCAAA+TGG | 0.497943 | 1_2:-57555043 | Msa0079620:CDS |
| ATCAGAAACGGCAAGTGCAA+TGG | 0.502613 | 1_2:+57555011 | None:intergenic |
| TTAAACAATATCAGAGGCTA+TGG | 0.508336 | 1_2:-57554849 | Msa0079620:CDS |
| GTCGAGGTATTCATCATGGT+TGG | 0.508823 | 1_2:+57557635 | None:intergenic |
| TCAGATCAAGGCTAGGTTGG+AGG | 0.516669 | 1_2:-57554149 | Msa0079620:CDS |
| TCGAAAATGGCTTGTTCCTG+AGG | 0.518443 | 1_2:+57554595 | None:intergenic |
| CTCGATTACAACGAGGATCG+TGG | 0.518702 | 1_2:-57557327 | Msa0079620:CDS |
| TGGTAAGGCTAAGATGGTGG+TGG | 0.518875 | 1_2:+57557491 | None:intergenic |
| TTAACATTGTCAATAAGATC+AGG | 0.519347 | 1_2:+57554493 | None:intergenic |
| GGAGGTGTATTTGAATCGGT+TGG | 0.520311 | 1_2:-57554185 | Msa0079620:CDS |
| GTCATTGCCCCAAATCTTGT+GGG | 0.523632 | 1_2:+57554567 | None:intergenic |
| AACTGGAGGTGTATTTGAAT+CGG | 0.526700 | 1_2:-57554189 | Msa0079620:CDS |
| AGCTTGTTGATAGGCTTCAA+AGG | 0.528780 | 1_2:-57557227 | Msa0079620:CDS |
| AGTGTTTGGTAAGGCTAAGA+TGG | 0.532647 | 1_2:+57557485 | None:intergenic |
| GTCATGGCATTCTCTCGAAA+CGG | 0.533318 | 1_2:-57557669 | Msa0079620:CDS |
| CGAAAATGGCTTGTTCCTGA+GGG | 0.533678 | 1_2:+57554596 | None:intergenic |
| CAATGTGGATGATAACGAAA+AGG | 0.535070 | 1_2:-57555085 | Msa0079620:CDS |
| CGATGACAAATTAGAAGAAG+AGG | 0.538540 | 1_2:-57557598 | Msa0079620:CDS |
| AGGCTAAGATGGTGGTGGTG+GGG | 0.539580 | 1_2:+57557496 | None:intergenic |
| CGAGGTATTCATCATGGTTG+GGG | 0.541899 | 1_2:+57557637 | None:intergenic |
| GATTTCTTTCAAGATCCCTC+AGG | 0.542535 | 1_2:-57554611 | Msa0079620:CDS |
| CGACGTCGAGGTATTCATCA+TGG | 0.544063 | 1_2:+57557631 | None:intergenic |
| TGTCATTGCCCCAAATCTTG+TGG | 0.546121 | 1_2:+57554566 | None:intergenic |
| AATCGGTTGGAGTTGTTGCA+AGG | 0.547050 | 1_2:-57554172 | Msa0079620:CDS |
| GACAAGATTACGATCTTGCA+AGG | 0.547606 | 1_2:-57557354 | Msa0079620:CDS |
| CGTGGATCTTCTTATCATAA+CGG | 0.548756 | 1_2:-57557309 | Msa0079620:CDS |
| AACAACATCGGCGACGCACT+GGG | 0.551267 | 1_2:+57554262 | None:intergenic |
| TCCAATAGGTCCTTCAACAA+TGG | 0.555130 | 1_2:+57554304 | None:intergenic |
| ATGGCAATGCTACTAGCATA+CGG | 0.556871 | 1_2:-57554363 | Msa0079620:CDS |
| GATGAATACCTCGACGTCGA+AGG | 0.560585 | 1_2:-57557627 | Msa0079620:CDS |
| TGGCAATGCTACTAGCATAC+GGG | 0.563532 | 1_2:-57554362 | Msa0079620:CDS |
| GGGATGAACAATGGTTAAAA+CGG | 0.566430 | 1_2:-57554222 | Msa0079620:CDS |
| CGCCGATGTTGTTATCGACA+GGG | 0.567511 | 1_2:-57554252 | Msa0079620:CDS |
| TGCCGTGTTTGTGTCATCTG+CGG | 0.578987 | 1_2:+57554954 | None:intergenic |
| AGCCATGGCCACCGTCACAA+CGG | 0.580091 | 1_2:+57554981 | None:intergenic |
| AAAATCAAATTTCTGAAGAA+CGG | 0.583113 | 1_2:+57557185 | None:intergenic |
| GACTTTGGACAAAGGCAAAG+AGG | 0.584181 | 1_2:-57554638 | Msa0079620:CDS |
| TACGTAACTTCTCAACAAGC+TGG | 0.586441 | 1_2:+57554683 | None:intergenic |
| GTTGTTGCAAGGTCAGATCA+AGG | 0.586461 | 1_2:-57554161 | Msa0079620:CDS |
| TCAGAGGCTATGGACAAAGC+AGG | 0.591463 | 1_2:-57554839 | Msa0079620:CDS |
| AGGTCAGATCAAGGCTAGGT+TGG | 0.595411 | 1_2:-57554152 | Msa0079620:CDS |
| TGTTGCGACAGTGTTTGGTA+AGG | 0.597213 | 1_2:+57557476 | None:intergenic |
| TGTTATCGACAGGGGAAGTG+AGG | 0.599112 | 1_2:-57554243 | Msa0079620:CDS |
| CGTCTTCACCTTCGACGTCG+AGG | 0.604875 | 1_2:+57557619 | None:intergenic |
| AATGTTAAGATGAAGGATGA+AGG | 0.605406 | 1_2:-57554478 | Msa0079620:CDS |
| GAAATTTCCCACAAGATTTG+GGG | 0.610345 | 1_2:-57554574 | Msa0079620:CDS |
| GTTATCGACAGGGGAAGTGA+GGG | 0.615083 | 1_2:-57554242 | Msa0079620:CDS |
| CTGGATTACATTAAACAGCA+AGG | 0.616623 | 1_2:-57554790 | Msa0079620:CDS |
| CCCCGCAGATGACACAAACA+CGG | 0.617705 | 1_2:-57554956 | Msa0079620:CDS |
| GACGAGATTGAACTGTTGAA+GGG | 0.620700 | 1_2:-57554817 | Msa0079620:CDS |
| CACAAGATGACTTTGGACAA+AGG | 0.621465 | 1_2:-57554646 | Msa0079620:CDS |
| CGTGTTTGTGTCATCTGCGG+GGG | 0.627292 | 1_2:+57554957 | None:intergenic |
| AACATCCAAAACGTCATGGT+CGG | 0.630878 | 1_2:+57554543 | None:intergenic |
| CCGTGTTTGTGTCATCTGCG+GGG | 0.639190 | 1_2:+57554956 | None:intergenic |
| CATCAACATCCAAAACGTCA+TGG | 0.640991 | 1_2:+57554539 | None:intergenic |
| TGCAAGGTCAGATCAAGGCT+AGG | 0.648837 | 1_2:-57554156 | Msa0079620:CDS |
| GGCAATGCTACTAGCATACG+GGG | 0.651150 | 1_2:-57554361 | Msa0079620:CDS |
| TGTTATAGTGGTAGTAGCCG+CGG | 0.655252 | 1_2:+57554915 | None:intergenic |
| GCCGATGTTGTTATCGACAG+GGG | 0.669203 | 1_2:-57554251 | Msa0079620:CDS |
| ATGAACAATGGTTAAAACGG+AGG | 0.670080 | 1_2:-57554219 | Msa0079620:CDS |
| GGGAAGTGAGGGATGAACAA+TGG | 0.671370 | 1_2:-57554231 | Msa0079620:CDS |
| AACAAACACAACCACCACCG+CGG | 0.675230 | 1_2:-57554932 | Msa0079620:CDS |
| CATGGCCACCGTCACAACGG+GGG | 0.676320 | 1_2:+57554984 | None:intergenic |
| CCATGGCCACCGTCACAACG+GGG | 0.678792 | 1_2:+57554983 | None:intergenic |
| TCCCCTGTCGATAACAACAT+CGG | 0.682290 | 1_2:+57554250 | None:intergenic |
| ACGGCGTTAAACAATATCAG+AGG | 0.682928 | 1_2:-57554855 | Msa0079620:CDS |
| GCAAATACTACTATTCAAAG+CGG | 0.683552 | 1_2:-57554763 | Msa0079620:CDS |
| TATAGTGGTAGTAGCCGCGG+TGG | 0.689187 | 1_2:+57554918 | None:intergenic |
| AGTTATTTCCAAATTCAGCG+TGG | 0.691134 | 1_2:-57554719 | Msa0079620:CDS |
| TGAAGACCAAATGGACAATG+TGG | 0.693003 | 1_2:-57555100 | Msa0079620:CDS |
| AACATCGGCGACGCACTGGG+TGG | 0.698538 | 1_2:+57554265 | None:intergenic |
| GTTTGGTAAGGCTAAGATGG+TGG | 0.710336 | 1_2:+57557488 | None:intergenic |
| AGCTTGTTGAGAAGTTACGT+AGG | 0.729557 | 1_2:-57554681 | Msa0079620:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATATATATTGTTTTTTGA+AGG | + | chr1_2:57555443-57555462 | None:intergenic | 10.0% |
| !!! | TTAGTTTTCAATTTTTTTAT+AGG | - | chr1_2:57555474-57555493 | Msa0079620:intron | 10.0% |
| !!! | TAGTTTTCAATTTTTTTATA+GGG | - | chr1_2:57555475-57555494 | Msa0079620:intron | 10.0% |
| !! | TTAGAATTAGATTTATATAT+TGG | - | chr1_2:57555500-57555519 | Msa0079620:intron | 10.0% |
| !! | AAATATAAATGCATAATATT+TGG | - | chr1_2:57555898-57555917 | Msa0079620:intron | 10.0% |
| !! | AAATTCAGTTAAAAATATAA+AGG | + | chr1_2:57556382-57556401 | None:intergenic | 10.0% |
| !! | TTTAACTGAATTTAAATTTA+CGG | - | chr1_2:57556389-57556408 | Msa0079620:intron | 10.0% |
| !! | TGAATAGAAATAATTATAAA+TGG | + | chr1_2:57556447-57556466 | None:intergenic | 10.0% |
| !! | TTAATCAATATACAAAAATC+AGG | + | chr1_2:57555164-57555183 | None:intergenic | 15.0% |
| !! | TTTGCAACAAATAAAAAAAA+AGG | - | chr1_2:57555201-57555220 | Msa0079620:intron | 15.0% |
| !!! | AGTTTTCAATTTTTTTATAG+GGG | - | chr1_2:57555476-57555495 | Msa0079620:intron | 15.0% |
| !!! | TTACTCTTCAATTTTTTTAA+AGG | - | chr1_2:57555656-57555675 | Msa0079620:intron | 15.0% |
| !! | GTTAAAAATATAAAGGATAA+AGG | + | chr1_2:57556375-57556394 | None:intergenic | 15.0% |
| !!! | AAAATCAAATTTCTGAAGAA+CGG | + | chr1_2:57554610-57554629 | None:intergenic | 20.0% |
| !!! | ATGATTACTTTTACTCTTAT+CGG | + | chr1_2:57554922-57554941 | None:intergenic | 20.0% |
| !!! | AGTAGATTATTTTGATATGT+AGG | + | chr1_2:57554969-57554988 | None:intergenic | 20.0% |
| !! | AAATAATCTACTGTCATATT+TGG | - | chr1_2:57554977-57554996 | Msa0079620:CDS | 20.0% |
| !! | AGAAAAAGAGTGAAAAAAAT+TGG | + | chr1_2:57555567-57555586 | None:intergenic | 20.0% |
| !!! | GATTTAGTCTTTTGAAAAAA+AGG | + | chr1_2:57555942-57555961 | None:intergenic | 20.0% |
| !! | AATATAAATGTACAGTGTTT+AGG | + | chr1_2:57556020-57556039 | None:intergenic | 20.0% |
| !!! | TATAACAAAAAGTATTCAGA+CGG | - | chr1_2:57556918-57556937 | Msa0079620:CDS | 20.0% |
| !!! | GTTTGGTAGTTTTTAATGTT+TGG | + | chr1_2:57554237-57554256 | None:intergenic | 25.0% |
| ! | ATCGTTCTATGATCAAATTA+AGG | - | chr1_2:57554512-57554531 | Msa0079620:CDS | 25.0% |
| !!! | GTTCTTCAGAAATTTGATTT+TGG | - | chr1_2:57554609-57554628 | Msa0079620:CDS | 25.0% |
| ! | AACAATAATTCAACTCCAAT+TGG | - | chr1_2:57554702-57554721 | Msa0079620:CDS | 25.0% |
| ! | TAAAAGTAATCATGTGCATA+AGG | - | chr1_2:57554929-57554948 | Msa0079620:CDS | 25.0% |
| ! | TTATGTAGATGATTGTTCTT+AGG | - | chr1_2:57555362-57555381 | Msa0079620:intron | 25.0% |
| ! | GAAGAGTAACTATTGTTTAA+GGG | + | chr1_2:57555645-57555664 | None:intergenic | 25.0% |
| ! | TGAAGAGTAACTATTGTTTA+AGG | + | chr1_2:57555646-57555665 | None:intergenic | 25.0% |
| ! | ATCACAAATTTCTCATGATA+CGG | - | chr1_2:57555704-57555723 | Msa0079620:intron | 25.0% |
| ! | CATGATACGGAATAAAATAA+TGG | - | chr1_2:57555717-57555736 | Msa0079620:intron | 25.0% |
| ! | CATTTCATATATTCATGTAG+AGG | - | chr1_2:57555858-57555877 | Msa0079620:intron | 25.0% |
| !! | ATACTCGTAATTTTATCCAA+TGG | - | chr1_2:57556121-57556140 | Msa0079620:intron | 25.0% |
| ! | TTATTCTAAACTCTCATTGA+TGG | + | chr1_2:57556242-57556261 | None:intergenic | 25.0% |
| !! | TGAGAGTTTAGAATAAACAT+TGG | - | chr1_2:57556246-57556265 | Msa0079620:intron | 25.0% |
| !! | AGTTTAGAATAAACATTGGT+TGG | - | chr1_2:57556250-57556269 | Msa0079620:intron | 25.0% |
| ! | TTAACATTGTCAATAAGATC+AGG | + | chr1_2:57557302-57557321 | None:intergenic | 25.0% |
| ! | TATTGACAATGTTAAGATGA+AGG | - | chr1_2:57557307-57557326 | Msa0079620:CDS | 25.0% |
| ! | ATTGTGAAGAAACAGATAAA+AGG | - | chr1_2:57557345-57557364 | Msa0079620:CDS | 25.0% |
| ! | TTGTGAAGAAACAGATAAAA+GGG | - | chr1_2:57557346-57557365 | Msa0079620:CDS | 25.0% |
| ! | GGTAGTTTTTAATGTTTGGT+TGG | + | chr1_2:57554233-57554252 | None:intergenic | 30.0% |
| !! | TTGACATAGATTTTTCGGTT+TGG | + | chr1_2:57554254-57554273 | None:intergenic | 30.0% |
| ! | GAAGGTTGACATAGATTTTT+CGG | + | chr1_2:57554259-57554278 | None:intergenic | 30.0% |
| ! | TATTCCATTTTCTCCCATTT+TGG | + | chr1_2:57554369-57554388 | None:intergenic | 30.0% |
| ! | GATTTTGTGTGAAATTTCAG+AGG | + | chr1_2:57554673-57554692 | None:intergenic | 30.0% |
| TAGTCAAATGAGCTGAATTA+GGG | + | chr1_2:57554770-57554789 | None:intergenic | 30.0% | |
| TTAGTCAAATGAGCTGAATT+AGG | + | chr1_2:57554771-57554790 | None:intergenic | 30.0% | |
| GACAATCATCATAACAATTC+AGG | - | chr1_2:57554864-57554883 | Msa0079620:CDS | 30.0% | |
| TAATCTACTGTCATATTTGG+AGG | - | chr1_2:57554980-57554999 | Msa0079620:CDS | 30.0% | |
| GCTACAACAATTCAATCAAT+AGG | - | chr1_2:57555002-57555021 | Msa0079620:CDS | 30.0% | |
| !! | ACTTTGAAGCATTTGCAATA+TGG | + | chr1_2:57555037-57555056 | None:intergenic | 30.0% |
| !! | GGAGTATTTTATGAAGTTTG+AGG | - | chr1_2:57555101-57555120 | Msa0079620:CDS | 30.0% |
| AAATCAGGAAACTACTCTTT+AGG | + | chr1_2:57555149-57555168 | None:intergenic | 30.0% | |
| TTCAACGAGATATGTTACAT+TGG | - | chr1_2:57555236-57555255 | Msa0079620:intron | 30.0% | |
| GGATATTATTATTGTGTCCT+TGG | - | chr1_2:57555257-57555276 | Msa0079620:intron | 30.0% | |
| !! | TATTGTGTCCTTGGTTTTTA+AGG | - | chr1_2:57555266-57555285 | Msa0079620:intron | 30.0% |
| ! | GGAATAAAATAATGGAACAG+AGG | - | chr1_2:57555725-57555744 | Msa0079620:intron | 30.0% |
| ATGAATGAGAAAGTCTATCA+TGG | + | chr1_2:57556048-57556067 | None:intergenic | 30.0% | |
| ! | TCGTAATTTTATCCAATGGA+TGG | - | chr1_2:57556125-57556144 | Msa0079620:intron | 30.0% |
| AATTCTAAACTCTCATTGAC+TGG | + | chr1_2:57556186-57556205 | None:intergenic | 30.0% | |
| AACTACCATCAACAAACAAA+CGG | - | chr1_2:57556479-57556498 | Msa0079620:intron | 30.0% | |
| TGGTTCAATACTCTAATATG+CGG | - | chr1_2:57556503-57556522 | Msa0079620:intron | 30.0% | |
| ATACTCTAATATGCGGAAAA+TGG | - | chr1_2:57556510-57556529 | Msa0079620:intron | 30.0% | |
| TTCTTCTTCTTCTTCTTCTT+CGG | + | chr1_2:57556616-57556635 | None:intergenic | 30.0% | |
| CATTGTATGGACATAGAAAA+TGG | + | chr1_2:57556734-57556753 | None:intergenic | 30.0% | |
| ! | TTTTCTATGTCCATACAATG+TGG | - | chr1_2:57556734-57556753 | Msa0079620:intron | 30.0% |
| TTAAACAATATCAGAGGCTA+TGG | - | chr1_2:57556943-57556962 | Msa0079620:CDS | 30.0% | |
| GCAAATACTACTATTCAAAG+CGG | - | chr1_2:57557029-57557048 | Msa0079620:CDS | 30.0% | |
| AGAAGTTACGTAGGTTAAAA+AGG | - | chr1_2:57557120-57557139 | Msa0079620:intron | 30.0% | |
| AATGTTAAGATGAAGGATGA+AGG | - | chr1_2:57557314-57557333 | Msa0079620:CDS | 30.0% | |
| CGATGACAAATTAGAAGAAG+AGG | - | chr1_2:57554194-57554213 | Msa0079620:CDS | 35.0% | |
| !!! | TTTCTCCCATTTTGGTTCAA+GGG | + | chr1_2:57554361-57554380 | None:intergenic | 35.0% |
| !!! | TTTTCTCCCATTTTGGTTCA+AGG | + | chr1_2:57554362-57554381 | None:intergenic | 35.0% |
| TGAACCAAAATGGGAGAAAA+TGG | - | chr1_2:57554362-57554381 | Msa0079620:CDS | 35.0% | |
| ! | ATAAGCTTTTCAAACGTCTC+TGG | - | chr1_2:57554406-57554425 | Msa0079620:CDS | 35.0% |
| CGTGGATCTTCTTATCATAA+CGG | - | chr1_2:57554483-57554502 | Msa0079620:CDS | 35.0% | |
| TCTTCTTATCATAACGGTAC+TGG | - | chr1_2:57554489-57554508 | Msa0079620:CDS | 35.0% | |
| TCTTAAACAGGAACACCAAT+TGG | + | chr1_2:57554720-57554739 | None:intergenic | 35.0% | |
| TGTTCCTGTTTAAGAAGATG+CGG | - | chr1_2:57554725-57554744 | Msa0079620:CDS | 35.0% | |
| ATTTCCGCATCTTCTTAAAC+AGG | + | chr1_2:57554732-57554751 | None:intergenic | 35.0% | |
| AATGAGCTGAATTAGGGTTA+GGG | + | chr1_2:57554764-57554783 | None:intergenic | 35.0% | |
| AAATGAGCTGAATTAGGGTT+AGG | + | chr1_2:57554765-57554784 | None:intergenic | 35.0% | |
| TGTGCATAAGGAACAGTATT+TGG | - | chr1_2:57554941-57554960 | Msa0079620:CDS | 35.0% | |
| ACTCTTTAGGCATTTCAGAT+TGG | + | chr1_2:57555136-57555155 | None:intergenic | 35.0% | |
| ! | TAAACTCTCATTGATGGTCA+TGG | + | chr1_2:57556236-57556255 | None:intergenic | 35.0% |
| CTTGAATAGTTAGGCAATGA+CGG | + | chr1_2:57556348-57556367 | None:intergenic | 35.0% | |
| AAAGGAGAGCTTGAATAGTT+AGG | + | chr1_2:57556357-57556376 | None:intergenic | 35.0% | |
| GACAAAATCCAAGAAACCAA+TGG | + | chr1_2:57556567-57556586 | None:intergenic | 35.0% | |
| TGACAATGTTGAAGACCAAA+TGG | - | chr1_2:57556683-57556702 | Msa0079620:intron | 35.0% | |
| TATCATCCACATTGTCCATT+TGG | + | chr1_2:57556701-57556720 | None:intergenic | 35.0% | |
| ! | CAATGTGGATGATAACGAAA+AGG | - | chr1_2:57556707-57556726 | Msa0079620:intron | 35.0% |
| !! | TTTTGAGCGTGTTGTTATAG+TGG | + | chr1_2:57556892-57556911 | None:intergenic | 35.0% |
| CTGGATTACATTAAACAGCA+AGG | - | chr1_2:57557002-57557021 | Msa0079620:CDS | 35.0% | |
| ! | AGTTATTTCCAAATTCAGCG+TGG | - | chr1_2:57557073-57557092 | Msa0079620:intron | 35.0% |
| AAGGAAACACAAGATGACTT+TGG | - | chr1_2:57557139-57557158 | Msa0079620:intron | 35.0% | |
| TGAGGGATCTTGAAAGAAAT+CGG | + | chr1_2:57557182-57557201 | None:intergenic | 35.0% | |
| CTTGTGGGAAATTTCGAAAA+TGG | + | chr1_2:57557213-57557232 | None:intergenic | 35.0% | |
| TCGAAATTTCCCACAAGATT+TGG | - | chr1_2:57557216-57557235 | Msa0079620:CDS | 35.0% | |
| CGAAATTTCCCACAAGATTT+GGG | - | chr1_2:57557217-57557236 | Msa0079620:CDS | 35.0% | |
| GAAATTTCCCACAAGATTTG+GGG | - | chr1_2:57557218-57557237 | Msa0079620:CDS | 35.0% | |
| TCAATAAGATCAGGACTTTC+AGG | + | chr1_2:57557293-57557312 | None:intergenic | 35.0% | |
| ACGTGAACACAAAAAATGAC+CGG | - | chr1_2:57557402-57557421 | Msa0079620:CDS | 35.0% | |
| ACAAAAAATGACCGGAACAA+TGG | - | chr1_2:57557410-57557429 | Msa0079620:intron | 35.0% | |
| ! | TTGTTTCTCACCATTGTTGA+AGG | - | chr1_2:57557478-57557497 | Msa0079620:CDS | 35.0% |
| GGGATGAACAATGGTTAAAA+CGG | - | chr1_2:57557570-57557589 | Msa0079620:CDS | 35.0% | |
| ATGAACAATGGTTAAAACGG+AGG | - | chr1_2:57557573-57557592 | Msa0079620:CDS | 35.0% | |
| ! | ATGGTTAAAACGGAGGATTT+TGG | - | chr1_2:57557580-57557599 | Msa0079620:CDS | 35.0% |
| ! | AACTGGAGGTGTATTTGAAT+CGG | - | chr1_2:57557603-57557622 | Msa0079620:CDS | 35.0% |
| ! | TCGAGGTATTCATCATGGTT+GGG | + | chr1_2:57554159-57554178 | None:intergenic | 40.0% |
| AGTGTTTGGTAAGGCTAAGA+TGG | + | chr1_2:57554310-57554329 | None:intergenic | 40.0% | |
| !! | TTTGTTGTTGCGACAGTGTT+TGG | + | chr1_2:57554324-57554343 | None:intergenic | 40.0% |
| GACAAGATTACGATCTTGCA+AGG | - | chr1_2:57554438-57554457 | Msa0079620:CDS | 40.0% | |
| ! | AGGTTTTCTCGATTACAACG+AGG | - | chr1_2:57554458-57554477 | Msa0079620:CDS | 40.0% |
| !! | AGCTTGTTGATAGGCTTCAA+AGG | - | chr1_2:57554565-57554584 | Msa0079620:CDS | 40.0% |
| CTGAATTAGGGTTAGGGTTT+GGG | + | chr1_2:57554758-57554777 | None:intergenic | 40.0% | |
| TAAGAGATTGCGAGCAGTTT+AGG | - | chr1_2:57554812-57554831 | Msa0079620:CDS | 40.0% | |
| AAATGCTTCAAAGTCCAGAG+CGG | - | chr1_2:57555043-57555062 | Msa0079620:CDS | 40.0% | |
| TTCACAGTCGTAACTTCTGA+TGG | - | chr1_2:57555079-57555098 | Msa0079620:CDS | 40.0% | |
| TCACAGTCGTAACTTCTGAT+GGG | - | chr1_2:57555080-57555099 | Msa0079620:CDS | 40.0% | |
| !! | GTCCTTGGTTTTTAAGGAGA+CGG | - | chr1_2:57555272-57555291 | Msa0079620:intron | 40.0% |
| !! | TCCTTGGTTTTTAAGGAGAC+GGG | - | chr1_2:57555273-57555292 | Msa0079620:intron | 40.0% |
| ATATGAAATGACACTGCCAG+TGG | + | chr1_2:57555848-57555867 | None:intergenic | 40.0% | |
| ! | ATCCAATGGATGGACTTGTA+TGG | - | chr1_2:57556135-57556154 | Msa0079620:intron | 40.0% |
| TACCATACAAGTCCATCCAT+TGG | + | chr1_2:57556140-57556159 | None:intergenic | 40.0% | |
| ! | AAACTCTCATTGACTGGTCA+TGG | + | chr1_2:57556180-57556199 | None:intergenic | 40.0% |
| ACCATCAACAAACAAACGGT+TGG | - | chr1_2:57556483-57556502 | Msa0079620:intron | 40.0% | |
| ! | ACCAACCGTTTGTTTGTTGA+TGG | + | chr1_2:57556487-57556506 | None:intergenic | 40.0% |
| !! | CAATGGTGAAAGCATTGTTG+AGG | + | chr1_2:57556550-57556569 | None:intergenic | 40.0% |
| CTCAACAATGCTTTCACCAT+TGG | - | chr1_2:57556548-57556567 | Msa0079620:intron | 40.0% | |
| !! | TGCTTTCACCATTGGTTTCT+TGG | - | chr1_2:57556556-57556575 | Msa0079620:intron | 40.0% |
| TGAAGACCAAATGGACAATG+TGG | - | chr1_2:57556692-57556711 | Msa0079620:intron | 40.0% | |
| TGGTCTTCATCCACATTGTA+TGG | + | chr1_2:57556747-57556766 | None:intergenic | 40.0% | |
| CAATGTGGATGAAGACCAAA+TGG | - | chr1_2:57556749-57556768 | Msa0079620:intron | 40.0% | |
| CAATGGGAATGTTGTCCATT+TGG | + | chr1_2:57556767-57556786 | None:intergenic | 40.0% | |
| ACGGCGTTAAACAATATCAG+AGG | - | chr1_2:57556937-57556956 | Msa0079620:CDS | 40.0% | |
| GACGAGATTGAACTGTTGAA+GGG | - | chr1_2:57556975-57556994 | Msa0079620:intron | 40.0% | |
| TGAACTGTTGAAGGGATATC+TGG | - | chr1_2:57556983-57557002 | Msa0079620:intron | 40.0% | |
| GTTGAATTCCACGCTGAATT+TGG | + | chr1_2:57557084-57557103 | None:intergenic | 40.0% | |
| AATTCAGCGTGGAATTCAAC+AGG | - | chr1_2:57557084-57557103 | Msa0079620:intron | 40.0% | |
| TACGTAACTTCTCAACAAGC+TGG | + | chr1_2:57557112-57557131 | None:intergenic | 40.0% | |
| !! | AGCTTGTTGAGAAGTTACGT+AGG | - | chr1_2:57557111-57557130 | Msa0079620:intron | 40.0% |
| CACAAGATGACTTTGGACAA+AGG | - | chr1_2:57557146-57557165 | Msa0079620:intron | 40.0% | |
| GATTTCTTTCAAGATCCCTC+AGG | - | chr1_2:57557181-57557200 | Msa0079620:intron | 40.0% | |
| AACATCCAAAACGTCATGGT+CGG | + | chr1_2:57557252-57557271 | None:intergenic | 40.0% | |
| CATCAACATCCAAAACGTCA+TGG | + | chr1_2:57557256-57557275 | None:intergenic | 40.0% | |
| TAGTAGCATTGCCATTGTTC+CGG | + | chr1_2:57557424-57557443 | None:intergenic | 40.0% | |
| ATGGCAATGCTACTAGCATA+CGG | - | chr1_2:57557429-57557448 | Msa0079620:intron | 40.0% | |
| TGGTGAGAAACAAGACTTCA+TGG | + | chr1_2:57557471-57557490 | None:intergenic | 40.0% | |
| ACCATTGTTGAAGGACCTAT+TGG | - | chr1_2:57557487-57557506 | Msa0079620:CDS | 40.0% | |
| TCCAATAGGTCCTTCAACAA+TGG | + | chr1_2:57557491-57557510 | None:intergenic | 40.0% | |
| CTACTGGAACATCATCCAAT+AGG | + | chr1_2:57557505-57557524 | None:intergenic | 40.0% | |
| !!! | AAAACGGAGGATTTTGGAAC+TGG | - | chr1_2:57557586-57557605 | Msa0079620:CDS | 40.0% |
| ! | CGAGGTATTCATCATGGTTG+GGG | + | chr1_2:57554158-57554177 | None:intergenic | 45.0% |
| ! | GTCGAGGTATTCATCATGGT+TGG | + | chr1_2:57554160-57554179 | None:intergenic | 45.0% |
| GTTTGGTAAGGCTAAGATGG+TGG | + | chr1_2:57554307-57554326 | None:intergenic | 45.0% | |
| TGTTGCGACAGTGTTTGGTA+AGG | + | chr1_2:57554319-57554338 | None:intergenic | 45.0% | |
| ! | CCTATCAACAAGCTAGCTCT+TGG | + | chr1_2:57554559-57554578 | None:intergenic | 45.0% |
| !! | CCAAGAGCTAGCTTGTTGAT+AGG | - | chr1_2:57554556-57554575 | Msa0079620:CDS | 45.0% |
| GCTGAATTAGGGTTAGGGTT+TGG | + | chr1_2:57554759-57554778 | None:intergenic | 45.0% | |
| TACGACTGTGAACGATGGTT+AGG | + | chr1_2:57555071-57555090 | None:intergenic | 45.0% | |
| GAAGTTACGACTGTGAACGA+TGG | + | chr1_2:57555076-57555095 | None:intergenic | 45.0% | |
| TCCCGTCTCCTTAAAAACCA+AGG | + | chr1_2:57555277-57555296 | None:intergenic | 45.0% | |
| !! | CTTAGGCATTGATACTGACC+AGG | - | chr1_2:57555379-57555398 | Msa0079620:intron | 45.0% |
| ! | CAGCTTTCAAGTGACCTGTA+GGG | + | chr1_2:57555824-57555843 | None:intergenic | 45.0% |
| ! | TCAGCTTTCAAGTGACCTGT+AGG | + | chr1_2:57555825-57555844 | None:intergenic | 45.0% |
| !! | CATGTAGAGGCATTCTTGCA+TGG | - | chr1_2:57555871-57555890 | Msa0079620:intron | 45.0% |
| !! | TTGATGGTCATGGACTGGTA+TGG | + | chr1_2:57556226-57556245 | None:intergenic | 45.0% |
| ! | TCTCATTGATGGTCATGGAC+TGG | + | chr1_2:57556231-57556250 | None:intergenic | 45.0% |
| ! | CAATGACGGTCGTTGATTAC+AGG | + | chr1_2:57556334-57556353 | None:intergenic | 45.0% |
| TGACGAAGAGGAAGATGATG+AGG | + | chr1_2:57556592-57556611 | None:intergenic | 45.0% | |
| TTCTTCTTCGGATGACGAAG+AGG | + | chr1_2:57556604-57556623 | None:intergenic | 45.0% | |
| TCAGAAACGGCAAGTGCAAT+GGG | + | chr1_2:57556783-57556802 | None:intergenic | 45.0% | |
| ATCAGAAACGGCAAGTGCAA+TGG | + | chr1_2:57556784-57556803 | None:intergenic | 45.0% | |
| TGTTATAGTGGTAGTAGCCG+CGG | + | chr1_2:57556880-57556899 | None:intergenic | 45.0% | |
| GGACGAGATTGAACTGTTGA+AGG | - | chr1_2:57556974-57556993 | Msa0079620:intron | 45.0% | |
| GACTTTGGACAAAGGCAAAG+AGG | - | chr1_2:57557154-57557173 | Msa0079620:intron | 45.0% | |
| !! | CGAAAATGGCTTGTTCCTGA+GGG | + | chr1_2:57557199-57557218 | None:intergenic | 45.0% |
| !! | TCGAAAATGGCTTGTTCCTG+AGG | + | chr1_2:57557200-57557219 | None:intergenic | 45.0% |
| GTCATTGCCCCAAATCTTGT+GGG | + | chr1_2:57557228-57557247 | None:intergenic | 45.0% | |
| TGTCATTGCCCCAAATCTTG+TGG | + | chr1_2:57557229-57557248 | None:intergenic | 45.0% | |
| AGATCAGGACTTTCAGGAAC+AGG | + | chr1_2:57557287-57557306 | None:intergenic | 45.0% | |
| TGGCAATGCTACTAGCATAC+GGG | - | chr1_2:57557430-57557449 | Msa0079620:intron | 45.0% | |
| TCCCCTGTCGATAACAACAT+CGG | + | chr1_2:57557545-57557564 | None:intergenic | 45.0% | |
| ! | GGAGGTGTATTTGAATCGGT+TGG | - | chr1_2:57557607-57557626 | Msa0079620:CDS | 45.0% |
| AATCGGTTGGAGTTGTTGCA+AGG | - | chr1_2:57557620-57557639 | Msa0079620:CDS | 45.0% | |
| GTTGTTGCAAGGTCAGATCA+AGG | - | chr1_2:57557631-57557650 | Msa0079620:CDS | 45.0% | |
| ! | CGACGTCGAGGTATTCATCA+TGG | + | chr1_2:57554164-57554183 | None:intergenic | 50.0% |
| GATGAATACCTCGACGTCGA+AGG | - | chr1_2:57554165-57554184 | Msa0079620:CDS | 50.0% | |
| !! | AAGGCTAAGATGGTGGTGGT+GGG | + | chr1_2:57554300-57554319 | None:intergenic | 50.0% |
| !! | TAAGGCTAAGATGGTGGTGG+TGG | + | chr1_2:57554301-57554320 | None:intergenic | 50.0% |
| ! | TGGTAAGGCTAAGATGGTGG+TGG | + | chr1_2:57554304-57554323 | None:intergenic | 50.0% |
| GCAACAACAAACGTCGTCGA+CGG | - | chr1_2:57554333-57554352 | Msa0079620:CDS | 50.0% | |
| ACGGCTCCCTTGAACCAAAA+TGG | - | chr1_2:57554352-57554371 | Msa0079620:CDS | 50.0% | |
| CGGCTCCCTTGAACCAAAAT+GGG | - | chr1_2:57554353-57554372 | Msa0079620:CDS | 50.0% | |
| CTCGATTACAACGAGGATCG+TGG | - | chr1_2:57554465-57554484 | Msa0079620:CDS | 50.0% | |
| GAGATTGCGAGCAGTTTAGG+AGG | - | chr1_2:57554815-57554834 | Msa0079620:CDS | 50.0% | |
| AGGAGACGGGAACAATAGTC+TGG | - | chr1_2:57555286-57555305 | Msa0079620:intron | 50.0% | |
| AGACGGGAACAATAGTCTGG+TGG | - | chr1_2:57555289-57555308 | Msa0079620:intron | 50.0% | |
| !! | GGCATTGATACTGACCAGGA+TGG | - | chr1_2:57555383-57555402 | Msa0079620:intron | 50.0% |
| AGACATTCGTGTGACCATCC+TGG | + | chr1_2:57555400-57555419 | None:intergenic | 50.0% | |
| ! | AGGAGTGGTTGGTTGAAGAG+AGG | + | chr1_2:57555756-57555775 | None:intergenic | 50.0% |
| GTCACTTGAAAGCTGACCAC+TGG | - | chr1_2:57555829-57555848 | Msa0079620:intron | 50.0% | |
| ! | CTCATTGACTGGTCATGGAC+TGG | + | chr1_2:57556175-57556194 | None:intergenic | 50.0% |
| AACGGGGGATGCATCAGAAA+CGG | + | chr1_2:57556796-57556815 | None:intergenic | 50.0% | |
| TGCCGTGTTTGTGTCATCTG+CGG | + | chr1_2:57556841-57556860 | None:intergenic | 50.0% | |
| AACAAACACAACCACCACCG+CGG | - | chr1_2:57556860-57556879 | Msa0079620:intron | 50.0% | |
| TCAGAGGCTATGGACAAAGC+AGG | - | chr1_2:57556953-57556972 | Msa0079620:CDS | 50.0% | |
| ! | TGACACCGACCATGACGTTT+TGG | - | chr1_2:57557244-57557263 | Msa0079620:intron | 50.0% |
| GGCAATGCTACTAGCATACG+GGG | - | chr1_2:57557431-57557450 | Msa0079620:intron | 50.0% | |
| TCGCCGATGTTGTTATCGAC+AGG | - | chr1_2:57557539-57557558 | Msa0079620:CDS | 50.0% | |
| CGCCGATGTTGTTATCGACA+GGG | - | chr1_2:57557540-57557559 | Msa0079620:CDS | 50.0% | |
| GCCGATGTTGTTATCGACAG+GGG | - | chr1_2:57557541-57557560 | Msa0079620:CDS | 50.0% | |
| TGTTATCGACAGGGGAAGTG+AGG | - | chr1_2:57557549-57557568 | Msa0079620:CDS | 50.0% | |
| GTTATCGACAGGGGAAGTGA+GGG | - | chr1_2:57557550-57557569 | Msa0079620:CDS | 50.0% | |
| GGGAAGTGAGGGATGAACAA+TGG | - | chr1_2:57557561-57557580 | Msa0079620:CDS | 50.0% | |
| !!! | ACGGAGGATTTTGGAACTGG+AGG | - | chr1_2:57557589-57557608 | Msa0079620:CDS | 50.0% |
| TGCAAGGTCAGATCAAGGCT+AGG | - | chr1_2:57557636-57557655 | Msa0079620:CDS | 50.0% | |
| AGGTCAGATCAAGGCTAGGT+TGG | - | chr1_2:57557640-57557659 | Msa0079620:CDS | 50.0% | |
| ! | TCAGATCAAGGCTAGGTTGG+AGG | - | chr1_2:57557643-57557662 | Msa0079620:CDS | 50.0% |
| !! | TAAGATGGTGGTGGTGGGGA+TGG | + | chr1_2:57554295-57554314 | None:intergenic | 55.0% |
| !! | AGGCTAAGATGGTGGTGGTG+GGG | + | chr1_2:57554299-57554318 | None:intergenic | 55.0% |
| ACGATGGTTAGGAACCGCTC+TGG | + | chr1_2:57555060-57555079 | None:intergenic | 55.0% | |
| TCAACCAACCACTCCTGTCC+TGG | - | chr1_2:57555760-57555779 | Msa0079620:intron | 55.0% | |
| !! | GTCATGGACTGGTCATGGAC+TGG | + | chr1_2:57556164-57556183 | None:intergenic | 55.0% |
| !! | GACTGGTCATGGACTGGTCA+TGG | + | chr1_2:57556169-57556188 | None:intergenic | 55.0% |
| TGATGCATCCCCCGTTGTGA+CGG | - | chr1_2:57556800-57556819 | Msa0079620:intron | 55.0% | |
| CGTGTTTGTGTCATCTGCGG+GGG | + | chr1_2:57556838-57556857 | None:intergenic | 55.0% | |
| CCGTGTTTGTGTCATCTGCG+GGG | + | chr1_2:57556839-57556858 | None:intergenic | 55.0% | |
| CCCCGCAGATGACACAAACA+CGG | - | chr1_2:57556836-57556855 | Msa0079620:intron | 55.0% | |
| GCCGTGTTTGTGTCATCTGC+GGG | + | chr1_2:57556840-57556859 | None:intergenic | 55.0% | |
| TATAGTGGTAGTAGCCGCGG+TGG | + | chr1_2:57556877-57556896 | None:intergenic | 55.0% | |
| AACAACATCGGCGACGCACT+GGG | + | chr1_2:57557533-57557552 | None:intergenic | 55.0% | |
| TAACAACATCGGCGACGCAC+TGG | + | chr1_2:57557534-57557553 | None:intergenic | 55.0% | |
| CGTCTTCACCTTCGACGTCG+AGG | + | chr1_2:57554176-57554195 | None:intergenic | 60.0% | |
| TGCTCCAGGACAGGAGTGGT+TGG | + | chr1_2:57555767-57555786 | None:intergenic | 60.0% | |
| ! | AGCTTGCTCCAGGACAGGAG+TGG | + | chr1_2:57555771-57555790 | None:intergenic | 60.0% |
| ! | GGCTAAGCTTGCTCCAGGAC+AGG | + | chr1_2:57555776-57555795 | None:intergenic | 60.0% |
| ! | TGGCTGGCTAAGCTTGCTCC+AGG | + | chr1_2:57555781-57555800 | None:intergenic | 60.0% |
| AGCCAGCCATCCCATCCTTG+TGG | - | chr1_2:57555792-57555811 | Msa0079620:intron | 60.0% | |
| TGCCACAAGGATGGGATGGC+TGG | + | chr1_2:57555797-57555816 | None:intergenic | 60.0% | |
| AGCCATCCCATCCTTGTGGC+AGG | - | chr1_2:57555796-57555815 | Msa0079620:intron | 60.0% | |
| CTCCTGCCACAAGGATGGGA+TGG | + | chr1_2:57555801-57555820 | None:intergenic | 60.0% | |
| AGGGCTCCTGCCACAAGGAT+GGG | + | chr1_2:57555805-57555824 | None:intergenic | 60.0% | |
| TAGGGCTCCTGCCACAAGGA+TGG | + | chr1_2:57555806-57555825 | None:intergenic | 60.0% | |
| AGCCATGGCCACCGTCACAA+CGG | + | chr1_2:57556814-57556833 | None:intergenic | 60.0% | |
| !! | GATGGTGGTGGTGGGGATGG+CGG | + | chr1_2:57554292-57554311 | None:intergenic | 65.0% |
| CCTGTAGGGCTCCTGCCACA+AGG | + | chr1_2:57555810-57555829 | None:intergenic | 65.0% | |
| CCTTGTGGCAGGAGCCCTAC+AGG | - | chr1_2:57555807-57555826 | Msa0079620:intron | 65.0% | |
| TGCATCCCCCGTTGTGACGG+TGG | - | chr1_2:57556803-57556822 | Msa0079620:intron | 65.0% | |
| CATGGCCACCGTCACAACGG+GGG | + | chr1_2:57556811-57556830 | None:intergenic | 65.0% | |
| CCATGGCCACCGTCACAACG+GGG | + | chr1_2:57556812-57556831 | None:intergenic | 65.0% | |
| GCCATGGCCACCGTCACAAC+GGG | + | chr1_2:57556813-57556832 | None:intergenic | 65.0% | |
| AGTGGTAGTAGCCGCGGTGG+TGG | + | chr1_2:57556874-57556893 | None:intergenic | 65.0% | |
| ! | GACGCACTGGGTGGCTCTAC+TGG | + | chr1_2:57557521-57557540 | None:intergenic | 65.0% |
| AACATCGGCGACGCACTGGG+TGG | + | chr1_2:57557530-57557549 | None:intergenic | 65.0% | |
| CCCCGTTGTGACGGTGGCCA+TGG | - | chr1_2:57556809-57556828 | Msa0079620:intron | 70.0% | |
| GTCATCTGCGGGGGCAGCCA+TGG | + | chr1_2:57556829-57556848 | None:intergenic | 70.0% | |
| ! | GATGGCGGCGGTGGTGGCGA+AGG | + | chr1_2:57554277-57554296 | None:intergenic | 75.0% |
| !! | GGTGGTGGTGGGGATGGCGG+CGG | + | chr1_2:57554289-57554308 | None:intergenic | 75.0% |
| !! | GGTGGGGATGGCGGCGGTGG+TGG | + | chr1_2:57554283-57554302 | None:intergenic | 80.0% |
| !!! | GGTGGTGGGGATGGCGGCGG+TGG | + | chr1_2:57554286-57554305 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 57554126 | 57557688 | 57554126 | ID=Msa0079620;Name=Msa0079620 |
| chr1_2 | mRNA | 57554126 | 57557688 | 57554126 | ID=Msa0079620-mRNA-1;Parent=Msa0079620;Name=Msa0079620-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|1|0|0|6|0|560 |
| chr1_2 | exon | 57557470 | 57557688 | 57557470 | ID=Msa0079620-mRNA-1:exon:18283;Parent=Msa0079620-mRNA-1 |
| chr1_2 | exon | 57557281 | 57557424 | 57557281 | ID=Msa0079620-mRNA-1:exon:18282;Parent=Msa0079620-mRNA-1 |
| chr1_2 | exon | 57557184 | 57557247 | 57557184 | ID=Msa0079620-mRNA-1:exon:18281;Parent=Msa0079620-mRNA-1 |
| chr1_2 | exon | 57556987 | 57557072 | 57556987 | ID=Msa0079620-mRNA-1:exon:18280;Parent=Msa0079620-mRNA-1 |
| chr1_2 | exon | 57556881 | 57556980 | 57556881 | ID=Msa0079620-mRNA-1:exon:18279;Parent=Msa0079620-mRNA-1 |
| chr1_2 | exon | 57554126 | 57555195 | 57554126 | ID=Msa0079620-mRNA-1:exon:18278;Parent=Msa0079620-mRNA-1 |
| chr1_2 | CDS | 57557470 | 57557688 | 57557470 | ID=Msa0079620-mRNA-1:cds;Parent=Msa0079620-mRNA-1 |
| chr1_2 | CDS | 57557281 | 57557424 | 57557281 | ID=Msa0079620-mRNA-1:cds;Parent=Msa0079620-mRNA-1 |
| chr1_2 | CDS | 57557184 | 57557247 | 57557184 | ID=Msa0079620-mRNA-1:cds;Parent=Msa0079620-mRNA-1 |
| chr1_2 | CDS | 57556987 | 57557072 | 57556987 | ID=Msa0079620-mRNA-1:cds;Parent=Msa0079620-mRNA-1 |
| chr1_2 | CDS | 57556881 | 57556980 | 57556881 | ID=Msa0079620-mRNA-1:cds;Parent=Msa0079620-mRNA-1 |
| chr1_2 | CDS | 57554126 | 57555195 | 57554126 | ID=Msa0079620-mRNA-1:cds;Parent=Msa0079620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
