AlfalfaGEDB | Msa0081410

M. sativa cultivar zhongmu-4 / Msa0081410

KEGG: K09422
GO: GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF13921.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0081410	XP_013469147.2	70.157	382	43	6	1	323	1	370	1.06e-165	476

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0081410	sp\|Q94FL7\|MY120_ARATH	53.782	119	53	2	11	129	26	142	1.95e-37	143

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0081410	A0A072VME4	65.696	309	35	6	1	250	1	297	1.13e-112	338

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TFs/TRs:

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Gene ID	Type	Classification
Msa0081410	TF	MYB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0081410	MtrunA17_Chr5g0441131	69.268	205	40	4	2	205	3	185	6.80e-82	246
Msa0081410	MtrunA17_Chr5g0440761	57.851	242	74	8	12	236	13	243	1.33e-78	240
Msa0081410	MtrunA17_Chr5g0441141	57.025	242	76	8	12	236	13	243	1.50e-76	236
Msa0081410	MtrunA17_Chr5g0440781	63.402	194	54	6	12	205	13	189	4.02e-73	224
Msa0081410	MtrunA17_Chr1g0193901	90.722	97	9	0	1	97	1	97	7.50e-47	154
Msa0081410	MtrunA17_Chr1g0193891	90.722	97	9	0	1	97	1	97	7.50e-47	154
Msa0081410	MtrunA17_Chr1g0193871	90.722	97	9	0	1	97	1	97	7.50e-47	154
Msa0081410	MtrunA17_Chr1g0193881	90.722	97	9	0	1	97	1	97	7.50e-47	154
Msa0081410	MtrunA17_Chr1g0192411	46.842	190	92	6	10	193	11	197	6.57e-40	144
Msa0081410	MtrunA17_Chr8g0354661	40.500	200	103	7	11	197	37	233	3.54e-39	145

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0081410	AT2G26960.1	46.541	159	74	4	9	158	18	174	5.41e-40	145
Msa0081410	AT5G55020.1	53.782	119	53	2	11	129	26	142	1.98e-38	143
Msa0081410	AT2G32460.2	44.099	161	78	3	6	166	1	149	3.35e-38	141
Msa0081410	AT2G32460.1	43.030	165	82	3	2	166	9	161	3.91e-38	141
Msa0081410	AT3G11440.2	55.085	118	51	2	11	128	41	156	1.60e-37	139
Msa0081410	AT3G11440.3	55.085	118	51	2	11	128	41	156	3.71e-37	140
Msa0081410	AT3G11440.4	55.085	118	51	2	11	128	41	156	3.71e-37	140
Msa0081410	AT3G11440.1	55.085	118	51	2	11	128	41	156	3.71e-37	140
Msa0081410	AT5G06100.1	55.652	115	49	2	11	125	32	144	3.77e-37	138
Msa0081410	AT5G06100.5	55.652	115	49	2	11	125	32	144	8.65e-37	138

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Find 67 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAAACATGAAAGACA+TGG	0.669709	1_2:-59940472	Msa0081410:CDS
AAAGTTCTTGATGTCATTAT+CGG	0.301665	1_2:+59940507	None:intergenic
AAATATGTTCTTCAATAATG+TGG	0.466264	1_2:-59940263	Msa0081410:CDS
AACACGGGACTCGCACACTG+TGG	0.692253	1_2:-59940898	Msa0081410:CDS
AACATAATGGAACTGGTTGA+TGG	0.486232	1_2:-59940430	Msa0081410:CDS
AACGTGTCATTCCAAAATTC+CGG	0.354522	1_2:+59939975	None:intergenic
AACTTTGAAAACTGCTTATT+TGG	0.060651	1_2:+59940298	None:intergenic
AAGCCAGGTCATTTGGTTTG+AGG	0.452339	1_2:-59939760	Msa0081410:CDS
AAGGAGGTATCAAAGAACAC+GGG	0.739276	1_2:-59940913	Msa0081410:CDS
AAGGCAATTGCTTTGGAGGA+AGG	0.515313	1_2:-59939792	Msa0081410:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TATGTTGAAAAACATGGAAC+CGG	-	chr1_2:59939815-59939834	Msa0081410:CDS	30.0%
CTACTTCAACTTTGATTGAT+AGG	-	chr1_2:59940542-59940561	Msa0081410:intron	30.0%
AGATGTCAGAGATAAATAAC+TGG	-	chr1_2:59940940-59940959	Msa0081410:CDS	30.0%
AGAGATAAATAACTGGAAGA+AGG	-	chr1_2:59940947-59940966	Msa0081410:CDS	30.0%
CAAACCAAATATCCGTATAA+GGG	+	chr1_2:59941026-59941045	None:intergenic	30.0%
TCAAACCAAATATCCGTATA+AGG	+	chr1_2:59941027-59941046	None:intergenic	30.0%
TATGTTGAAAAACATGGAAC+CGG	-	chr1_2:59939815-59939834	Msa0081410:CDS	30.0%
CTACTTCAACTTTGATTGAT+AGG	-	chr1_2:59940542-59940561	Msa0081410:intron	30.0%
AGATGTCAGAGATAAATAAC+TGG	-	chr1_2:59940940-59940959	Msa0081410:CDS	30.0%
AGAGATAAATAACTGGAAGA+AGG	-	chr1_2:59940947-59940966	Msa0081410:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	59939734	59941046	59939734	ID=Msa0081410;Name=Msa0081410
chr1_2	mRNA	59939734	59941046	59939734	ID=Msa0081410-mRNA-1;Parent=Msa0081410;Name=Msa0081410-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0\|0.5\|0\|1\|1\|1\|3\|0\|323
chr1_2	exon	59940759	59941046	59940759	ID=Msa0081410-mRNA-1:exon:19527;Parent=Msa0081410-mRNA-1
chr1_2	exon	59940217	59940542	59940217	ID=Msa0081410-mRNA-1:exon:19526;Parent=Msa0081410-mRNA-1
chr1_2	exon	59939734	59940091	59939734	ID=Msa0081410-mRNA-1:exon:19525;Parent=Msa0081410-mRNA-1
chr1_2	CDS	59940759	59941046	59940759	ID=Msa0081410-mRNA-1:cds;Parent=Msa0081410-mRNA-1
chr1_2	CDS	59940217	59940542	59940217	ID=Msa0081410-mRNA-1:cds;Parent=Msa0081410-mRNA-1
chr1_2	CDS	59939734	59940091	59939734	ID=Msa0081410-mRNA-1:cds;Parent=Msa0081410-mRNA-1

Gene Sequence

>Msa0081410

ATGACTTCATCGTTGGTTACTAATAAAAGGTTGAAGAAAGGAACATTATGGTCAGAAGAAGAAGATGAAATATTAAAAGCATATGTTGAAAAACATGGAACCGGAAATTGGAAGGAGGTATCAAAGAACACGGGACTCGCACACTGTGGAAGAAGTTGCCGTTTTAGATGGTATAATACTCTACGACCTGATGTAAAAAAGGGTCCGTTTAGTAAAGAAGAAGAAGAAAAATTCTTTGAGTTATGTTCTAAGTTTGGTGAGTTCAAATGGTCTAAGATGGCTCTCGAGATGCCTGGAAGAACCGATAATGACATCAAGAACTTTTGGAATGCAAGAAAAAGAAAACATGAAAGACATGGCTTGTCACCCTTCCCTGACAACATAATGGAACTGGTTGATGGTTTGAAGAGTAGTAATGGAAAAAGAATAAGGAATTCACAAGAAAACAAATTTAAGATACCAGAAGTTAAATTTGTAAATCAAATTCTGCATACAAACTTGTCTGATCTCCCAAATAAGCAGTTTTCAAAGTTGATTGATGATTCAAATATGTTCTTCAATAATGTGGGAAGTACTTCTACAAGCAATCATACTACTTCAACTTTGATTGATAGGGAAGAAGGGAAGAAGCCTTTGGAGAACGATGAAAAAGGGAAGAAGCCTTTGGAGAATGATGTTGAAGCAAACCTACATGACGACATAATGAATCCGGAATTTTGGAATGACACGTTCAGCACATTAGTCAATGAGGTTTACGATGACTTGCATGACAAGCTTCCATATGATTTTAATGATGCCTTAGACACTTGCATGACAATGCAATCGGATCTGCCTCCACTCCCACCACCTATGGAGACACAACATCAGATGTCAGAGATAAATAACTGGAAGAAGGCAATTGCTTTGGAGGAAGGTGTTGATGAAAGCCAGGTCATTTGGTTTGAGGAACCCTTATACGGATATTTGGTTTGA

Protein sequence

>Msa0081410

MTSSLVTNKRLKKGTLWSEEEDEILKAYVEKHGTGNWKEVSKNTGLAHCGRSCRFRWYNTLRPDVKKGPFSKEEEEKFFELCSKFGEFKWSKMALEMPGRTDNDIKNFWNARKRKHERHGLSPFPDNIMELVDGLKSSNGKRIRNSQENKFKIPEVKFVNQILHTNLSDLPNKQFSKLIDDSNMFFNNVGSTSTSNHTTSTLIDREEGKKPLENDEKGKKPLENDVEANLHDDIMNPEFWNDTFSTLVNEVYDDLHDKLPYDFNDALDTCMTMQSDLPPLPPPMETQHQMSEINNWKKAIALEEGVDESQVIWFEEPLYGYLV*