AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0081670

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0081670 MtrunA17_Chr1g0194301 94.604 278 14 1 1 277 1 278 0.0 540
Msa0081670 MtrunA17_Chr1g0194291 58.233 249 86 5 32 275 21 256 2.31e-92 274
Msa0081670 MtrunA17_Chr4g0068921 68.667 150 47 0 16 165 8 157 9.45e-71 216
Msa0081670 MtrunA17_Chr2g0293911 74.286 140 36 0 26 165 18 157 2.57e-70 219
Msa0081670 MtrunA17_Chr1g0209661 56.790 162 70 0 26 187 21 182 5.26e-69 216
Msa0081670 MtrunA17_Chr7g0228231 69.672 122 36 1 26 147 9 129 3.20e-58 185
Msa0081670 MtrunA17_Chr6g0450101 72.807 114 30 1 26 139 9 121 6.33e-58 184
Msa0081670 MtrunA17_Chr1g0168661 70.093 107 32 0 31 137 20 126 3.78e-52 171
Msa0081670 MtrunA17_Chr1g0186061 66.667 105 35 0 33 137 21 125 9.30e-50 164
Msa0081670 MtrunA17_Chr2g0327821 59.633 109 44 0 32 140 6 114 3.09e-46 155
Msa0081670 MtrunA17_Chr4g0030881 56.098 123 45 2 25 140 2 122 4.61e-44 150
Msa0081670 MtrunA17_Chr8g0346561 59.483 116 45 1 32 145 12 127 6.81e-44 150
Msa0081670 MtrunA17_Chr5g0410961 53.279 122 57 0 28 149 8 129 1.12e-43 151
Msa0081670 MtrunA17_Chr3g0099131 58.879 107 44 0 32 138 41 147 1.54e-43 155
Msa0081670 MtrunA17_Chr3g0080861 60.185 108 43 0 30 137 35 142 4.09e-43 154
Msa0081670 MtrunA17_Chr2g0323411 57.407 108 46 0 28 135 8 115 4.11e-42 147
Msa0081670 MtrunA17_Chr8g0354661 55.263 114 51 0 24 137 29 142 5.91e-42 151
Msa0081670 MtrunA17_Chr5g0395281 50.382 131 64 1 26 155 6 136 8.09e-42 145
Msa0081670 MtrunA17_Chr4g0039971 52.000 125 59 1 32 155 13 137 9.19e-42 147
Msa0081670 MtrunA17_Chr1g0193371 55.172 116 52 0 32 147 12 127 1.61e-41 146
Msa0081670 MtrunA17_Chr4g0057031 54.783 115 52 0 28 142 8 122 2.00e-41 144
Msa0081670 MtrunA17_Chr7g0275911 57.547 106 45 0 32 137 12 117 3.01e-41 142
Msa0081670 MtrunA17_Chr3g0115821 50.000 134 66 1 28 161 8 140 3.05e-41 145
Msa0081670 MtrunA17_Chr1g0154031 57.547 106 45 0 32 137 76 181 3.06e-41 147
Msa0081670 MtrunA17_Chr3g0131121 61.765 102 39 0 34 135 14 115 3.14e-41 144
Msa0081670 MtrunA17_Chr1g0203411 56.075 107 47 0 32 138 12 118 6.36e-41 143
Msa0081670 MtrunA17_Chr1g0187761 54.955 111 50 0 28 138 8 118 8.66e-41 141
Msa0081670 MtrunA17_Chr4g0070611 55.963 109 48 0 32 140 12 120 1.05e-40 142
Msa0081670 MtrunA17_Chr2g0281071 54.955 111 50 0 32 142 13 123 1.37e-40 143
Msa0081670 MtrunA17_Chr7g0261281 44.444 153 81 1 28 180 8 156 1.74e-40 141
Msa0081670 MtrunA17_Chr3g0110351 53.043 115 54 0 28 142 8 122 2.15e-40 142
Msa0081670 MtrunA17_Chr4g0070641 55.963 109 48 0 32 140 12 120 2.26e-40 137
Msa0081670 MtrunA17_Chr1g0180391 56.604 106 46 0 32 137 19 124 2.52e-40 139
Msa0081670 MtrunA17_Chr8g0349261 39.459 185 97 2 23 192 4 188 2.55e-40 141
Msa0081670 MtrunA17_Chr4g0048511 54.054 111 51 0 32 142 13 123 2.55e-40 143
Msa0081670 MtrunA17_Chr5g0435101 45.255 137 75 0 28 164 7 143 3.66e-40 139
Msa0081670 MtrunA17_Chr8g0385321 52.941 119 56 0 34 152 14 132 4.50e-40 141
Msa0081670 MtrunA17_Chr5g0434571 53.043 115 54 0 28 142 44 158 5.33e-40 142
Msa0081670 MtrunA17_Chr8g0343831 57.009 107 46 0 32 138 8 114 5.80e-40 139
Msa0081670 MtrunA17_Chr7g0217741 54.955 111 50 0 32 142 12 122 7.17e-40 140
Msa0081670 MtrunA17_Chr4g0055981 48.571 140 64 1 1 140 32 163 1.54e-39 137
Msa0081670 MtrunA17_Chr4g0037141 59.804 102 41 0 34 135 14 115 1.68e-39 139
Msa0081670 MtrunA17_Chr1g0211161 53.153 111 52 0 32 142 13 123 1.85e-39 137
Msa0081670 MtrunA17_Chr2g0328771 55.556 108 48 0 32 139 20 127 2.77e-39 139
Msa0081670 MtrunA17_Chr7g0274581 50.450 111 55 0 28 138 8 118 3.38e-39 136
Msa0081670 MtrunA17_Chr7g0217221 43.871 155 77 2 28 172 8 162 4.01e-39 137
Msa0081670 MtrunA17_Chr1g0167691 55.769 104 46 0 32 135 12 115 4.86e-39 137
Msa0081670 MtrunA17_Chr2g0322521 54.545 121 54 1 17 137 15 134 6.40e-39 140
Msa0081670 MtrunA17_Chr4g0022881 53.636 110 51 0 28 137 8 117 7.71e-39 135
Msa0081670 MtrunA17_Chr6g0453471 53.043 115 54 0 28 142 8 122 8.11e-39 139
Msa0081670 MtrunA17_Chr4g0042671 52.542 118 56 0 32 149 12 129 8.20e-39 140
Msa0081670 MtrunA17_Chr3g0117091 53.153 111 52 0 32 142 12 122 8.50e-39 139
Msa0081670 MtrunA17_Chr2g0330041 54.808 104 47 0 32 135 12 115 8.77e-39 140
Msa0081670 MtrunA17_Chr4g0068061 55.085 118 50 1 28 145 8 122 8.97e-39 138
Msa0081670 MtrunA17_Chr7g0270891 54.955 111 50 0 32 142 12 122 1.29e-38 139
Msa0081670 MtrunA17_Chr8g0387421 57.009 107 46 0 32 138 12 118 1.40e-38 137
Msa0081670 MtrunA17_Chr8g0342521 36.735 196 112 2 32 227 12 195 1.44e-38 138
Msa0081670 MtrunA17_Chr4g0022901 57.143 105 45 0 32 136 13 117 1.46e-38 136
Msa0081670 MtrunA17_Chr1g0151941 52.294 109 51 1 28 135 8 116 1.58e-38 135
Msa0081670 MtrunA17_Chr4g0022931 49.265 136 60 1 32 158 13 148 2.18e-38 135
Msa0081670 MtrunA17_Chr4g0022911 57.143 105 45 0 32 136 13 117 2.62e-38 136
Msa0081670 MtrunA17_Chr1g0167661 45.833 144 71 2 32 175 12 148 2.63e-38 135
Msa0081670 MtrunA17_Chr7g0271241 54.310 116 53 0 32 147 12 127 2.94e-38 138
Msa0081670 MtrunA17_Chr7g0228891 53.043 115 54 0 28 142 8 122 3.23e-38 135
Msa0081670 MtrunA17_Chr3g0092401 53.704 108 50 0 32 139 13 120 3.73e-38 136
Msa0081670 MtrunA17_Chr3g0121241 57.692 104 44 0 32 135 42 145 3.81e-38 136
Msa0081670 MtrunA17_Chr8g0342541 53.846 104 48 0 32 135 12 115 4.38e-38 137
Msa0081670 MtrunA17_Chr4g0032401 52.679 112 53 0 32 143 17 128 5.48e-38 136
Msa0081670 MtrunA17_Chr2g0309911 53.846 104 48 0 32 135 11 114 6.14e-38 135
Msa0081670 MtrunA17_Chr4g0060721 54.630 108 49 0 28 135 9 116 9.78e-38 135
Msa0081670 MtrunA17_Chr6g0453211 57.282 103 44 0 28 130 8 110 1.08e-37 135
Msa0081670 MtrunA17_Chr1g0203441 53.043 115 53 1 33 146 14 128 1.10e-37 134
Msa0081670 MtrunA17_Chr7g0254411 51.327 113 55 0 32 144 12 124 2.20e-37 135
Msa0081670 MtrunA17_Chr4g0028311 39.683 189 93 5 28 202 8 189 2.34e-37 134
Msa0081670 MtrunA17_Chr5g0397231 58.586 99 41 0 32 130 12 110 3.17e-37 134
Msa0081670 MtrunA17_Chr1g0193801 53.153 111 52 0 32 142 12 122 3.84e-37 135
Msa0081670 MtrunA17_Chr4g0022891 48.000 125 58 1 28 152 8 125 6.04e-37 131
Msa0081670 MtrunA17_Chr3g0088461 53.774 106 49 0 32 137 22 127 1.12e-36 133
Msa0081670 MtrunA17_Chr4g0044421 41.718 163 85 3 34 195 14 167 1.44e-36 129
Msa0081670 MtrunA17_Chr6g0470971 55.340 103 46 0 33 135 15 117 2.24e-36 130
Msa0081670 MtrunA17_Chr4g0058631 53.211 109 47 1 32 136 12 120 3.59e-36 132
Msa0081670 MtrunA17_Chr1g0194951 54.808 104 47 0 32 135 12 115 5.97e-36 132
Msa0081670 MtrunA17_Chr2g0323351 54.369 103 47 0 32 134 12 114 6.89e-36 129
Msa0081670 MtrunA17_Chr6g0452271 49.565 115 58 0 28 142 8 122 1.01e-35 130
Msa0081670 MtrunA17_Chr2g0327351 56.731 104 44 1 28 130 8 111 1.51e-35 129
Msa0081670 MtrunA17_Chr1g0152011 55.046 109 48 1 28 135 8 116 1.89e-35 130
Msa0081670 MtrunA17_Chr3g0103281 50.450 111 55 0 32 142 12 122 4.34e-35 128
Msa0081670 MtrunA17_Chr3g0135311 55.046 109 48 1 28 135 8 116 5.17e-35 129
Msa0081670 MtrunA17_Chr8g0342481 52.381 105 49 1 32 135 12 116 5.76e-35 130
Msa0081670 MtrunA17_Chr2g0311221 52.885 104 49 0 28 131 10 113 6.38e-35 128
Msa0081670 MtrunA17_Chr5g0400821 54.128 109 49 1 28 135 8 116 1.15e-34 127
Msa0081670 MtrunA17_Chr1g0192411 49.091 110 56 0 28 137 8 117 5.91e-34 127
Msa0081670 MtrunA17_Chr7g0240821 47.059 119 63 0 37 155 6 124 1.32e-33 122
Msa0081670 MtrunA17_Chr8g0334881 46.491 114 60 1 27 139 5 118 1.74e-33 124
Msa0081670 MtrunA17_Chr4g0072751 55.769 104 45 1 28 130 8 111 1.76e-33 125
Msa0081670 MtrunA17_Chr5g0417821 47.414 116 61 0 32 147 7 122 3.24e-33 122
Msa0081670 MtrunA17_Chr7g0269831 53.211 109 51 0 32 140 12 120 3.79e-33 124
Msa0081670 MtrunA17_Chr4g0054391 54.902 102 45 1 28 128 8 109 5.43e-33 122
Msa0081670 MtrunA17_Chr7g0264641 46.032 126 67 1 28 152 8 133 6.49e-33 121
Msa0081670 MtrunA17_Chr8g0360111 47.656 128 64 1 6 133 2 126 6.86e-33 121
Msa0081670 MtrunA17_Chr6g0487491 49.573 117 50 2 28 135 8 124 3.71e-32 119
Msa0081670 MtrunA17_Chr5g0440781 48.544 103 52 1 33 134 13 115 1.17e-31 115
Msa0081670 MtrunA17_Chr5g0441131 43.077 130 68 3 26 154 3 127 2.77e-31 114
Msa0081670 MtrunA17_Chr5g0440761 48.544 103 52 1 33 134 13 115 4.15e-31 116
Msa0081670 MtrunA17_Chr7g0220341 46.032 126 65 2 13 136 7 131 4.50e-31 116
Msa0081670 MtrunA17_Chr5g0441141 48.544 103 52 1 33 134 13 115 4.60e-31 116
Msa0081670 MtrunA17_Chr3g0099141 53.488 86 40 0 28 113 36 121 1.19e-30 112
Msa0081670 MtrunA17_Chr4g0013361 46.729 107 56 1 32 137 10 116 2.69e-30 115
Msa0081670 MtrunA17_Chr5g0434931 50.000 104 52 0 32 135 35 138 6.86e-30 114
Msa0081670 MtrunA17_Chr5g0434831 47.273 110 58 0 27 136 2 111 2.70e-29 109
Msa0081670 MtrunA17_Chr7g0247131 55.952 84 37 0 64 147 10 93 5.54e-29 111
Msa0081670 MtrunA17_Chr5g0434911 49.533 107 54 0 29 135 18 124 6.90e-29 110
Msa0081670 MtrunA17_Chr7g0228991 49.524 105 53 0 32 136 29 133 1.88e-28 109
Msa0081670 MtrunA17_Chr5g0434841 48.571 105 54 0 32 136 20 124 5.60e-28 109
Msa0081670 MtrunA17_Chr4g0042611 54.545 77 35 0 32 108 12 88 1.23e-25 97.1
Msa0081670 MtrunA17_Chr8g0342511 55.263 76 34 0 32 107 12 87 1.26e-25 97.4
Msa0081670 MtrunA17_Chr2g0323321 52.941 85 40 0 28 112 7 91 2.00e-25 97.4
Msa0081670 MtrunA17_Chr8g0342531 52.564 78 37 0 32 109 12 89 5.52e-25 97.8
Msa0081670 MtrunA17_Chr3g0133601 46.602 103 54 1 34 136 37 138 8.48e-25 99.0
Msa0081670 MtrunA17_Chr6g0454921 42.241 116 66 1 34 149 15 129 1.31e-24 98.2
Msa0081670 MtrunA17_Chr4g0008551 47.115 104 52 2 34 136 38 139 1.89e-24 100
Msa0081670 MtrunA17_Chr7g0238631 44.118 102 56 1 34 135 113 213 2.41e-24 102
Msa0081670 MtrunA17_Chr5g0395221 50.649 77 38 0 32 108 12 88 7.42e-24 92.4
Msa0081670 MtrunA17_Chr5g0401731 43.119 109 61 1 34 142 15 122 1.13e-23 98.2
Msa0081670 MtrunA17_Chr5g0429661 34.839 155 96 3 31 182 119 271 1.52e-23 98.2
Msa0081670 MtrunA17_Chr6g0460661 38.739 111 65 2 34 143 16 124 1.93e-23 93.6
Msa0081670 MtrunA17_Chr8g0342461 49.367 79 39 1 32 109 12 90 2.03e-23 92.8
Msa0081670 MtrunA17_Chr2g0294811 53.247 77 36 0 32 108 12 88 2.23e-23 92.0
Msa0081670 MtrunA17_Chr8g0342471 49.367 79 39 1 32 109 12 90 4.95e-23 92.0
Msa0081670 MtrunA17_Chr5g0425591 43.956 91 50 1 26 115 3 93 6.30e-23 90.1
Msa0081670 MtrunA17_Chr7g0238651 40.909 110 63 1 37 144 10 119 3.87e-22 94.4
Msa0081670 MtrunA17_Chr3g0139671 40.777 103 58 2 34 135 85 185 5.58e-22 95.5
Msa0081670 MtrunA17_Chr4g0058991 34.783 161 98 4 3 160 176 332 7.93e-22 94.4
Msa0081670 MtrunA17_Chr4g0053431 42.157 102 58 1 34 135 5 105 1.45e-21 91.3
Msa0081670 MtrunA17_Chr1g0157731 40.196 102 60 1 34 135 91 191 1.58e-21 94.4
Msa0081670 MtrunA17_Chr5g0417621 37.190 121 73 2 19 138 119 237 2.59e-21 92.8
Msa0081670 MtrunA17_Chr4g0042501 39.623 106 61 2 34 138 105 208 9.10e-21 91.3
Msa0081670 MtrunA17_Chr3g0125801 39.316 117 68 2 23 138 5 119 1.38e-20 89.0
Msa0081670 MtrunA17_Chr6g0480581 40.566 106 60 2 34 138 4 107 1.55e-20 87.8
Msa0081670 MtrunA17_Chr3g0117511 39.815 108 62 2 34 140 183 288 2.08e-20 90.1
Msa0081670 MtrunA17_Chr7g0229101 57.971 69 29 0 64 132 4 72 4.60e-20 85.9
Msa0081670 MtrunA17_Chr3g0093811 50.633 79 39 0 64 142 14 92 7.20e-20 86.7
Msa0081670 MtrunA17_Chr6g0453751 43.011 93 44 2 32 115 20 112 1.21e-19 82.8
Msa0081670 MtrunA17_Chr7g0228531 37.037 135 81 3 23 157 209 339 2.11e-19 87.4
Msa0081670 MtrunA17_Chr5g0434901 61.538 65 25 0 66 130 7 71 2.38e-19 81.6
Msa0081670 MtrunA17_Chr5g0437321 45.263 95 51 1 34 128 19 112 2.89e-19 85.5
Msa0081670 MtrunA17_Chr7g0254261 39.640 111 63 3 34 143 89 196 4.40e-19 85.9
Msa0081670 MtrunA17_Chr6g0460671 38.053 113 67 2 28 139 93 203 6.94e-19 85.1
Msa0081670 MtrunA17_Chr7g0229131 38.333 120 69 2 64 183 4 118 1.89e-18 80.5
Msa0081670 MtrunA17_Chr5g0397841 43.158 95 53 1 34 128 110 203 3.15e-18 84.0
Msa0081670 MtrunA17_Chr5g0416341 38.235 102 60 2 37 137 29 128 3.73e-17 80.9
Msa0081670 MtrunA17_Chr8g0362231 38.261 115 65 3 37 150 25 134 1.87e-16 79.0
Msa0081670 MtrunA17_Chr7g0228401 38.372 86 52 1 45 130 290 374 1.03e-15 76.6
Msa0081670 MtrunA17_Chr1g0177901 37.931 87 53 1 44 130 4 89 1.07e-15 73.9
Msa0081670 MtrunA17_Chr1g0193901 45.238 84 44 2 32 113 11 94 7.95e-15 69.3
Msa0081670 MtrunA17_Chr1g0193891 45.238 84 44 2 32 113 11 94 7.95e-15 69.3
Msa0081670 MtrunA17_Chr1g0193871 45.238 84 44 2 32 113 11 94 7.95e-15 69.3
Msa0081670 MtrunA17_Chr1g0193881 45.238 84 44 2 32 113 11 94 7.95e-15 69.3
Msa0081670 MtrunA17_Chr7g0228481 32.836 134 86 3 24 157 210 339 2.12e-14 72.8
Msa0081670 MtrunA17_Chr7g0233061 34.906 106 48 2 34 130 180 273 6.95e-14 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0081670 AT2G47190.1 48.450 258 109 4 32 276 20 266 2.67e-80 244
Msa0081670 AT1G48000.1 67.347 147 47 1 32 177 32 178 2.40e-73 225
Msa0081670 AT3G06490.1 75.540 139 34 0 27 165 14 152 1.43e-72 226
Msa0081670 AT5G49620.1 74.468 141 36 0 27 167 21 161 1.30e-71 223
Msa0081670 AT1G68320.1 66.901 142 47 0 32 173 19 160 5.64e-70 218
Msa0081670 AT5G49620.2 67.742 155 36 1 27 167 21 175 6.62e-68 214
Msa0081670 AT1G25340.1 52.020 198 64 4 33 230 19 185 3.05e-65 206
Msa0081670 AT1G25340.2 50.000 198 63 5 33 230 19 180 9.08e-60 191
Msa0081670 AT1G25340.3 50.000 198 63 5 33 230 19 180 1.88e-59 191
Msa0081670 AT3G27810.1 73.832 107 28 0 32 138 20 126 4.48e-58 185
Msa0081670 AT3G01530.1 49.189 185 73 3 11 185 4 177 1.42e-56 181
Msa0081670 AT5G40350.1 73.786 103 27 0 32 134 17 119 1.20e-55 179
Msa0081670 AT3G24310.1 67.619 105 34 0 33 137 19 123 7.50e-50 166
Msa0081670 AT4G13480.1 67.290 107 35 0 31 137 5 111 1.22e-49 165
Msa0081670 AT5G59780.3 63.889 108 39 0 33 140 9 116 1.01e-48 162
Msa0081670 AT3G46130.1 61.607 112 43 0 33 144 10 121 1.78e-48 162
Msa0081670 AT3G30210.1 64.762 105 37 0 33 137 28 132 4.45e-47 159
Msa0081670 AT5G14750.1 51.034 145 68 2 33 175 17 160 2.07e-44 149
Msa0081670 AT5G40330.1 42.647 204 87 4 33 228 13 194 5.05e-44 149
Msa0081670 AT5G16770.4 53.030 132 60 2 32 161 12 143 5.43e-43 149
Msa0081670 AT5G16770.3 53.030 132 60 2 32 161 12 143 5.43e-43 149
Msa0081670 AT5G16770.1 53.030 132 60 2 32 161 12 143 8.93e-43 149
Msa0081670 AT5G16770.2 53.030 132 60 2 32 161 12 143 8.93e-43 149
Msa0081670 AT2G32460.1 53.782 119 55 0 19 137 5 123 1.13e-42 152
Msa0081670 AT3G02940.2 54.098 122 56 0 28 149 8 129 1.38e-42 148
Msa0081670 AT3G11440.2 57.009 107 46 0 31 137 40 146 1.51e-42 151
Msa0081670 AT2G32460.2 59.434 106 43 0 32 137 6 111 1.72e-42 151
Msa0081670 AT3G02940.1 54.098 122 56 0 28 149 8 129 1.92e-42 148
Msa0081670 AT3G02940.3 54.098 122 56 0 28 149 8 129 1.92e-42 148
Msa0081670 AT4G12350.1 45.395 152 71 2 28 174 8 152 2.83e-42 146
Msa0081670 AT5G65230.1 51.613 124 60 0 26 149 6 129 5.59e-42 146
Msa0081670 AT5G54230.1 55.856 111 49 0 32 142 12 122 5.72e-42 147
Msa0081670 AT1G06180.1 53.333 120 56 0 32 151 12 131 6.08e-42 144
Msa0081670 AT3G11440.3 57.009 107 46 0 31 137 40 146 9.34e-42 150
Msa0081670 AT3G11440.4 57.009 107 46 0 31 137 40 146 9.34e-42 150
Msa0081670 AT3G11440.1 57.009 107 46 0 31 137 40 146 9.34e-42 150
Msa0081670 AT2G31180.1 57.407 108 46 0 28 135 8 115 9.48e-42 144
Msa0081670 AT4G05100.1 54.955 111 50 0 32 142 13 123 1.02e-41 146
Msa0081670 AT1G22640.1 54.701 117 53 0 32 148 12 128 1.06e-41 144
Msa0081670 AT4G21440.1 44.304 158 77 2 32 180 12 167 1.47e-41 146
Msa0081670 AT1G66230.1 55.652 115 51 0 28 142 8 122 1.88e-41 144
Msa0081670 AT5G06100.1 55.455 110 49 0 28 137 28 137 1.90e-41 148
Msa0081670 AT4G34990.1 62.745 102 38 0 34 135 14 115 2.13e-41 144
Msa0081670 AT4G26930.1 55.000 120 54 0 19 138 6 125 2.14e-41 147
Msa0081670 AT3G27920.1 62.136 103 39 0 33 135 15 117 2.51e-41 142
Msa0081670 AT5G55020.1 54.237 118 54 0 21 138 15 132 2.53e-41 149
Msa0081670 AT5G10280.1 52.459 122 58 0 28 149 8 129 2.91e-41 145
Msa0081670 AT5G52600.1 60.000 105 42 0 32 136 12 116 4.64e-41 140
Msa0081670 AT4G28110.1 56.731 104 45 0 32 135 12 115 6.66e-41 143
Msa0081670 AT5G06100.5 55.455 110 49 0 28 137 28 137 7.52e-41 148
Msa0081670 AT5G06100.2 55.455 110 49 0 28 137 28 137 7.52e-41 148
Msa0081670 AT5G06100.3 55.455 110 49 0 28 137 28 137 7.52e-41 148
Msa0081670 AT5G06100.4 55.455 110 49 0 28 137 28 137 7.52e-41 148
Msa0081670 AT3G23250.1 37.879 198 101 2 28 225 8 183 1.24e-40 142
Msa0081670 AT5G15310.1 50.394 127 63 0 28 154 8 134 1.42e-40 143
Msa0081670 AT5G15310.4 51.220 123 60 0 28 150 8 130 1.55e-40 141
Msa0081670 AT5G15310.2 50.394 127 63 0 28 154 8 134 1.71e-40 142
Msa0081670 AT3G47600.1 53.846 117 52 1 28 142 8 124 2.19e-40 143
Msa0081670 AT3G13540.1 53.279 122 57 0 30 151 21 142 2.22e-40 140
Msa0081670 AT4G22680.1 50.833 120 59 0 28 147 8 127 2.45e-40 141
Msa0081670 AT1G34670.1 50.769 130 63 1 32 161 12 140 2.61e-40 143
Msa0081670 AT3G53200.1 56.190 105 46 0 31 135 8 112 3.62e-40 139
Msa0081670 AT3G01140.2 51.220 123 60 0 28 150 8 130 5.08e-40 142
Msa0081670 AT2G26960.1 52.101 119 56 1 32 150 20 137 9.41e-40 143
Msa0081670 AT3G01140.1 51.220 123 60 0 28 150 51 173 1.44e-39 142
Msa0081670 AT3G61250.1 49.167 120 61 0 28 147 8 127 1.58e-39 140
Msa0081670 AT1G79180.1 54.955 111 50 0 28 138 10 120 1.93e-39 139
Msa0081670 AT2G16720.1 58.654 104 43 0 32 135 12 115 2.06e-39 139
Msa0081670 AT3G13890.2 55.769 104 46 0 32 135 12 115 2.22e-39 141
Msa0081670 AT4G38620.1 58.824 102 42 0 34 135 14 115 2.30e-39 139
Msa0081670 AT5G26660.1 45.139 144 79 0 32 175 12 155 2.37e-39 140
Msa0081670 AT3G27810.2 77.027 74 17 0 65 138 4 77 3.94e-39 135
Msa0081670 AT5G16600.1 53.043 115 54 0 28 142 8 122 4.97e-39 139
Msa0081670 AT1G35515.1 57.692 104 44 0 32 135 12 115 6.15e-39 135
Msa0081670 AT1G57560.2 56.731 104 45 0 32 135 12 115 8.32e-39 137
Msa0081670 AT1G57560.1 54.054 111 51 0 32 142 12 122 8.75e-39 138
Msa0081670 AT4G17785.2 52.542 118 56 0 32 149 13 130 1.06e-38 139
Msa0081670 AT4G17785.1 52.542 118 56 0 32 149 13 130 1.20e-38 139
Msa0081670 AT1G09540.1 50.862 116 57 0 32 147 12 127 1.44e-38 139
Msa0081670 AT1G08810.1 52.101 119 57 0 28 146 8 126 1.76e-38 136
Msa0081670 AT2G47460.1 59.615 104 42 0 32 135 12 115 2.05e-38 139
Msa0081670 AT5G62470.2 54.630 108 49 0 32 139 12 119 2.30e-38 138
Msa0081670 AT1G16490.1 52.778 108 51 0 28 135 10 117 3.44e-38 135
Msa0081670 AT4G37780.1 56.881 109 46 1 28 135 8 116 4.00e-38 136
Msa0081670 AT4G09460.1 57.843 102 43 0 34 135 14 115 5.19e-38 134
Msa0081670 AT1G74650.1 55.046 109 49 0 32 140 12 120 6.00e-38 136
Msa0081670 AT5G60890.1 45.985 137 73 1 32 167 12 148 6.95e-38 135
Msa0081670 AT5G12870.1 53.704 108 50 0 32 139 18 125 1.21e-37 134
Msa0081670 AT5G07690.1 55.340 103 46 0 32 134 12 114 1.70e-37 135
Msa0081670 AT1G63910.1 55.140 107 48 0 32 138 12 118 1.99e-37 136
Msa0081670 AT5G35550.1 51.220 123 52 2 32 146 14 136 2.38e-37 133
Msa0081670 AT5G62320.1 47.692 130 61 1 28 150 9 138 3.10e-37 132
Msa0081670 AT3G62610.1 57.692 104 44 0 32 135 12 115 3.51e-37 135
Msa0081670 AT5G40350.2 78.571 70 15 0 65 134 5 74 3.91e-37 129
Msa0081670 AT3G28910.1 50.420 119 59 0 28 146 8 126 4.71e-37 134
Msa0081670 AT1G18570.1 53.097 113 53 0 23 135 4 116 5.46e-37 134
Msa0081670 AT5G14340.1 50.000 120 60 0 28 147 20 139 5.63e-37 132
Msa0081670 AT3G12720.1 50.962 104 51 0 32 135 22 125 7.97e-37 133
Msa0081670 AT5G61420.2 43.836 146 79 1 32 177 12 154 8.13e-37 134
Msa0081670 AT5G07700.1 53.846 104 48 0 32 135 12 115 8.40e-37 134
Msa0081670 AT5G07700.2 53.846 104 48 0 32 135 12 115 8.40e-37 134
Msa0081670 AT1G56160.1 52.778 108 51 0 28 135 10 117 1.24e-36 132
Msa0081670 AT4G01680.3 54.717 106 48 0 32 137 12 117 1.88e-36 130
Msa0081670 AT3G13890.1 51.327 113 46 1 32 135 12 124 2.21e-36 133
Msa0081670 AT5G62470.1 54.630 108 48 1 32 139 12 118 2.30e-36 132
Msa0081670 AT5G49330.1 54.630 108 49 0 28 135 8 115 2.42e-36 132
Msa0081670 AT3G08500.1 54.717 106 48 0 32 137 30 135 4.08e-36 132
Msa0081670 AT4G01680.1 54.717 106 48 0 32 137 12 117 4.42e-36 132
Msa0081670 AT3G28470.1 53.398 103 48 0 28 130 8 110 1.50e-35 130
Msa0081670 AT1G74080.1 55.340 103 46 0 32 134 12 114 1.84e-35 130
Msa0081670 AT3G12820.1 50.926 108 53 0 28 135 10 117 5.49e-35 126
Msa0081670 AT5G57620.1 50.833 120 58 1 28 146 8 127 7.05e-35 128
Msa0081670 AT1G74430.1 48.276 116 60 0 32 147 12 127 8.61e-35 127
Msa0081670 AT5G56110.1 50.450 111 55 0 32 142 12 122 1.58e-34 127
Msa0081670 AT3G49690.1 54.128 109 49 1 28 135 8 116 2.07e-34 127
Msa0081670 AT5G23000.1 51.376 109 52 1 28 135 8 116 3.78e-34 126
Msa0081670 AT3G46130.3 66.667 81 27 0 64 144 9 89 4.89e-34 123
Msa0081670 AT5G65790.1 53.211 109 50 1 28 135 8 116 1.07e-33 126
Msa0081670 AT3G46130.4 66.250 80 27 0 65 144 20 99 2.34e-33 122
Msa0081670 AT5G59780.2 68.421 76 24 0 65 140 20 95 2.35e-33 121
Msa0081670 AT5G52260.1 50.000 116 54 1 33 144 13 128 3.27e-33 122
Msa0081670 AT3G48920.1 51.961 102 49 0 33 134 19 120 3.81e-33 122
Msa0081670 AT1G79180.2 42.361 144 50 1 28 138 10 153 5.79e-33 123
Msa0081670 AT3G60460.1 50.459 109 53 1 32 139 11 119 5.89e-33 122
Msa0081670 AT4G01680.2 49.153 118 48 1 32 137 12 129 1.05e-32 123
Msa0081670 AT2G36890.1 51.376 109 52 1 28 135 8 116 1.72e-32 121
Msa0081670 AT4G25560.1 51.456 103 50 0 33 135 11 113 2.08e-32 120
Msa0081670 AT2G36890.2 51.376 109 52 1 28 135 49 157 3.09e-32 121
Msa0081670 AT1G18710.1 50.962 104 51 0 32 135 12 115 5.27e-31 116
Msa0081670 AT1G66370.1 49.091 110 56 0 32 141 8 117 7.99e-31 115
Msa0081670 AT2G26950.1 41.880 117 64 1 22 134 2 118 4.09e-29 114
Msa0081670 AT3G53200.2 64.789 71 25 0 65 135 9 79 6.03e-29 109
Msa0081670 AT1G56650.1 37.791 172 96 3 32 203 8 168 6.58e-28 108
Msa0081670 AT1G66380.1 50.962 104 51 0 32 135 8 111 7.06e-28 105
Msa0081670 AT5G26660.2 45.045 111 61 0 65 175 14 124 1.15e-26 106
Msa0081670 AT1G66390.1 50.962 104 51 0 32 135 8 111 1.48e-26 104
Msa0081670 AT5G35550.2 54.737 95 35 2 60 146 45 139 2.47e-26 104
Msa0081670 AT5G14750.3 64.706 68 24 0 68 135 18 85 4.84e-26 100
Msa0081670 AT3G12820.2 61.765 68 26 0 68 135 2 69 1.81e-24 97.4
Msa0081670 AT3G47600.2 55.000 80 34 1 65 142 39 118 2.73e-24 100
Msa0081670 AT3G27785.1 37.405 131 74 2 32 155 187 316 2.87e-24 101
Msa0081670 AT4G37260.1 32.653 196 126 4 22 215 1 192 2.90e-24 100
Msa0081670 AT5G02320.1 43.137 102 57 1 34 135 127 227 6.32e-24 101
Msa0081670 AT5G02320.2 43.137 102 57 1 34 135 127 227 6.32e-24 101
Msa0081670 AT5G02320.3 43.137 102 57 1 34 135 67 167 1.00e-23 100
Msa0081670 AT1G69560.1 41.667 108 60 2 32 138 105 210 4.36e-23 97.1
Msa0081670 AT1G69560.2 41.667 108 60 2 32 138 121 226 4.92e-23 97.1
Msa0081670 AT3G09370.2 42.718 103 58 1 34 136 135 236 7.09e-23 98.2
Msa0081670 AT3G09370.1 42.718 103 58 1 34 136 130 231 7.37e-23 98.2
Msa0081670 AT3G09370.3 42.718 103 58 1 34 136 143 244 7.72e-23 98.2
Msa0081670 AT5G11510.3 41.176 102 59 1 34 135 81 181 9.33e-23 98.2
Msa0081670 AT5G11510.1 41.176 102 59 1 34 135 81 181 9.33e-23 98.2
Msa0081670 AT5G11510.4 41.176 102 59 1 34 135 81 181 9.33e-23 98.2
Msa0081670 AT4G18770.1 40.741 108 63 1 34 141 217 323 9.38e-23 97.1
Msa0081670 AT5G11510.5 41.176 102 59 1 34 135 81 181 1.04e-22 98.2
Msa0081670 AT5G11510.2 41.176 102 59 1 34 135 81 181 1.04e-22 98.2
Msa0081670 AT2G23290.1 45.098 102 55 1 34 135 13 113 1.09e-22 95.5
Msa0081670 AT3G09230.1 50.526 95 46 1 34 128 55 148 1.53e-22 96.3
Msa0081670 AT3G29020.1 41.667 108 62 1 31 138 62 168 1.60e-22 93.6
Msa0081670 AT3G29020.2 41.667 108 62 1 31 138 64 170 3.54e-22 94.0
Msa0081670 AT1G17950.1 42.727 110 60 2 30 138 1 108 8.18e-22 92.0
Msa0081670 AT1G26780.1 39.450 109 63 2 31 138 95 201 8.63e-22 92.4
Msa0081670 AT5G40360.1 40.816 98 57 1 31 128 155 251 9.63e-22 93.6
Msa0081670 AT1G26780.2 39.450 109 63 2 31 138 95 201 1.22e-21 93.2
Msa0081670 AT2G39880.1 42.453 106 58 2 34 138 50 153 1.37e-21 93.2
Msa0081670 AT3G55730.1 42.991 107 58 2 34 139 56 160 2.87e-21 92.8
Msa0081670 AT1G73410.1 41.818 110 61 2 30 138 2 109 3.14e-21 90.1
Msa0081670 AT1G73410.2 41.818 110 61 2 30 138 2 109 4.96e-21 88.6
Msa0081670 AT5G58850.1 40.741 108 61 2 34 140 105 210 6.32e-21 92.0
Msa0081670 AT5G11050.1 34.568 162 96 4 32 186 103 261 6.81e-21 92.0
Msa0081670 AT5G17800.1 38.739 111 67 1 28 138 87 196 8.76e-21 90.5
Msa0081670 AT4G32730.5 38.235 102 62 1 34 135 87 187 1.44e-20 92.0
Msa0081670 AT4G32730.4 38.235 102 62 1 34 135 87 187 1.44e-20 92.0
Msa0081670 AT4G32730.3 38.235 102 62 1 34 135 87 187 1.44e-20 92.0
Msa0081670 AT4G32730.2 38.235 102 62 1 34 135 87 187 1.44e-20 92.0
Msa0081670 AT4G32730.1 38.235 102 62 1 34 135 87 187 1.52e-20 91.7
Msa0081670 AT2G25230.1 42.424 99 56 1 32 130 24 121 8.44e-20 86.3
Msa0081670 AT3G50060.1 43.158 95 53 1 34 128 6 99 1.42e-19 86.7
Msa0081670 AT4G33450.1 36.508 126 79 1 33 158 18 142 1.42e-19 85.9
Msa0081670 AT1G22640.3 53.521 71 33 0 78 148 1 71 1.88e-19 84.3
Msa0081670 AT5G67300.1 41.176 102 59 1 34 135 6 106 2.29e-19 86.3
Msa0081670 AT2G37630.1 39.623 106 62 1 37 140 7 112 6.17e-19 85.9
Msa0081670 AT5G14750.4 43.000 100 54 2 78 175 1 99 6.97e-19 81.3
Msa0081670 AT5G14750.2 43.000 100 54 2 78 175 1 99 6.97e-19 81.3
Msa0081670 AT3G23250.2 33.784 148 76 2 78 225 1 126 1.50e-18 82.8
Msa0081670 AT5G59780.1 66.667 51 17 0 90 140 1 51 1.91e-18 80.9
Msa0081670 AT3G46130.2 63.636 55 20 0 90 144 1 55 2.16e-18 81.3
Msa0081670 AT1G66380.3 57.746 71 30 0 65 135 8 78 3.06e-18 78.6
Msa0081670 AT1G18960.1 33.945 109 69 2 34 142 10 115 8.01e-17 79.3
Msa0081670 AT5G40430.1 42.000 100 54 3 32 130 52 148 1.45e-16 77.8
Msa0081670 AT1G71030.2 44.872 78 43 0 71 148 5 82 1.50e-16 76.3
Msa0081670 AT1G71030.1 44.872 78 43 0 71 148 19 96 1.92e-16 76.3
Msa0081670 AT1G14350.2 34.677 124 72 4 37 157 28 145 3.52e-16 78.2
Msa0081670 AT1G14350.1 34.677 124 72 4 37 157 28 145 3.52e-16 78.2
Msa0081670 AT1G66380.2 47.436 78 41 0 32 109 8 85 5.22e-16 72.8
Msa0081670 AT5G39700.1 38.462 104 60 2 35 135 57 159 5.38e-16 74.7
Msa0081670 AT4G00540.2 34.188 117 73 2 32 145 101 216 1.39e-15 76.6
Msa0081670 AT4G00540.1 34.188 117 73 2 32 145 99 214 1.98e-15 76.3
Msa0081670 AT2G02820.3 34.375 128 71 3 37 156 33 155 5.15e-15 74.3
Msa0081670 AT2G02820.2 34.375 128 71 3 37 156 33 155 5.22e-15 75.1
Msa0081670 AT2G02820.1 34.375 128 71 3 37 156 33 155 5.34e-15 75.1
Msa0081670 AT4G25560.2 56.522 46 20 0 90 135 2 47 1.85e-11 62.8

Find 65 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTGCTCTGTTCAAATTCT+TGG 0.113188 1_2:-60341639 None:intergenic
AAACGTATCTTACAATTTAA+TGG 0.137838 1_2:+60341561 Msa0081670:CDS
GAACTCCGTCGCTCGCTGTT+CGG 0.248764 1_2:+60340935 Msa0081670:CDS
ACTCCTCATTACATGAATAT+TGG 0.277088 1_2:-60340784 None:intergenic
TTTAATGGATTGTGCGGAAC+TGG 0.299412 1_2:+60341576 Msa0081670:CDS
GGGACACATTGCGTTTAGTA+TGG 0.307542 1_2:+60341347 Msa0081670:CDS
AACTCCGTCGCTCGCTGTTC+GGG 0.308012 1_2:+60340936 Msa0081670:CDS
CAAGAATCAAGACTTGTTCT+TGG 0.312108 1_2:-60341040 None:intergenic
ATGTAAACAGTCAACAGTTT+AGG 0.327525 1_2:+60341326 Msa0081670:CDS
CTACAGTTGCACGAGAAGTT+TGG 0.332824 1_2:-60341393 None:intergenic
ATTTCATTGTCTGTTCTTCC+CGG 0.345263 1_2:-60341250 None:intergenic
ATGAGCTTTAGTATTGTTGT+AGG 0.359962 1_2:-60341449 None:intergenic
TAAAATAGCGGAACAATTAC+CGG 0.361983 1_2:+60341231 Msa0081670:CDS
ATGTTCCCACGTCGAACATT+TGG 0.362169 1_2:-60341011 None:intergenic
TGTGGACAGATGAAAATATA+TGG 0.370670 1_2:+60341680 Msa0081670:CDS
ACAATGAAATAAAGAACTAT+TGG 0.390495 1_2:+60341263 Msa0081670:CDS
TTCATTCCCGTTGGGGCAAT+CGG 0.393266 1_2:+60341066 Msa0081670:CDS
GAGGTTTCATCGTACTCGTC+AGG 0.403448 1_2:+60341517 Msa0081670:CDS
TTCTTGATCTTCATTCCCGT+TGG 0.406689 1_2:+60341057 Msa0081670:CDS
GGAACTGGGATCCACGTTGC+AGG 0.410029 1_2:+60341591 Msa0081670:CDS
GGTGATTTGTCCGTGGCTAT+AGG 0.410879 1_2:-60341425 None:intergenic
TACGTACCGATTGCCCCAAC+GGG 0.417932 1_2:-60341072 None:intergenic
TCTTGATCTTCATTCCCGTT+GGG 0.419228 1_2:+60341058 Msa0081670:CDS
AGATGTAAGTCAAGATACTA+TGG 0.432089 1_2:+60340833 Msa0081670:CDS
TGTAAACAGTCAACAGTTTA+GGG 0.435530 1_2:+60341327 Msa0081670:CDS
CAAGAGTGGTGAAGCAAGCT+AGG 0.457237 1_2:+60341290 Msa0081670:CDS
TGTTCGGGTCTAAAGAGAAC+CGG 0.457348 1_2:+60340951 Msa0081670:CDS
CAGTCCACGGAGATGGTCAC+TGG 0.481786 1_2:+60340913 Msa0081670:CDS
GATACTATGGTGATAAAGAA+AGG 0.502153 1_2:+60340846 Msa0081670:CDS
CTTGATCTTCATTCCCGTTG+GGG 0.504304 1_2:+60341059 Msa0081670:CDS
AGGTTTCATCGTACTCGTCA+GGG 0.509587 1_2:+60341518 Msa0081670:CDS
AAGCTCATAGTGAAACTTGT+GGG 0.520297 1_2:+60341464 Msa0081670:CDS
TCCTCCCATGTTGCAGTCAG+AGG 0.529236 1_2:+60341498 Msa0081670:CDS
GTATCCTCCTCTTCTGTCCA+TGG 0.531773 1_2:-60340870 None:intergenic
GAAACCTCTGACTGCAACAT+GGG 0.535668 1_2:-60341502 None:intergenic
TGGGATCCACGTTGCAGGAG+TGG 0.536111 1_2:+60341596 Msa0081670:CDS
ATACGTACCGATTGCCCCAA+CGG 0.547651 1_2:-60341073 None:intergenic
AAGCCAATATTCATGTAATG+AGG 0.554596 1_2:+60340781 Msa0081670:CDS
ATCAACTATGTGGCAGTCCA+CGG 0.557690 1_2:+60340900 Msa0081670:CDS
TGAAACCTCTGACTGCAACA+TGG 0.560706 1_2:-60341503 None:intergenic
TTAATGGATTGTGCGGAACT+GGG 0.572101 1_2:+60341577 Msa0081670:CDS
GGAAAAGCTGCAGATTAAGA+TGG 0.575213 1_2:+60340973 Msa0081670:CDS
AGCTTTAGTATTGTTGTAGG+TGG 0.582622 1_2:-60341446 None:intergenic
TTACAATTTAATGGATTGTG+CGG 0.586971 1_2:+60341570 Msa0081670:CDS
TATGTGGCAGTCCACGGAGA+TGG 0.598972 1_2:+60340906 Msa0081670:CDS
AGGTCCATGGACAGAAGAGG+AGG 0.600682 1_2:+60340866 Msa0081670:CDS
TGGTGATAAAGAAAGGTCCA+TGG 0.601432 1_2:+60340853 Msa0081670:CDS
AAAATAGCGGAACAATTACC+GGG 0.602178 1_2:+60341232 Msa0081670:CDS
ACCTCTGACTGCAACATGGG+AGG 0.606494 1_2:-60341499 None:intergenic
GTTCGGGTCTAAAGAGAACC+GGG 0.612268 1_2:+60340952 Msa0081670:CDS
AAAGCTCATAGTGAAACTTG+TGG 0.615117 1_2:+60341463 Msa0081670:CDS
TACTATTCTGATCAACTATG+TGG 0.617635 1_2:+60340890 Msa0081670:CDS
TGGATTCTCTCGATGAGACG+TGG 0.617904 1_2:-60341373 None:intergenic
GAAAGGTCCATGGACAGAAG+AGG 0.623514 1_2:+60340863 Msa0081670:CDS
ATGAAGGTGGTCTAAAATAG+CGG 0.627439 1_2:+60341219 Msa0081670:intron
GGTTTCATCGTACTCGTCAG+GGG 0.629943 1_2:+60341519 Msa0081670:CDS
GATACTAATTCCTATAGCCA+CGG 0.634352 1_2:+60341415 Msa0081670:CDS
GAACTATTGGAGAACAAGAG+TGG 0.634570 1_2:+60341276 Msa0081670:CDS
AGCTCATAGTGAAACTTGTG+GGG 0.647510 1_2:+60341465 Msa0081670:CDS
TAGACCCGAACAGCGAGCGA+CGG 0.654403 1_2:-60340940 None:intergenic
TGTAGGTGGTGATTTGTCCG+TGG 0.667948 1_2:-60341432 None:intergenic
TTGCGTCCAAATGTTCGACG+TGG 0.681223 1_2:+60341005 Msa0081670:CDS
TGCGTCCAAATGTTCGACGT+GGG 0.700019 1_2:+60341006 Msa0081670:CDS
GCAGTTCCACTCCTGCAACG+TGG 0.712558 1_2:-60341602 None:intergenic
AGTTCCAGTGACCATCTCCG+TGG 0.715119 1_2:-60340917 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTCAATGAAATAATTGTTT+TGG + chr1_2:60341164-60341183 Msa0081670:intron 15.0%
!!! TTTCAATGAAATAATTGTTT+TGG + chr1_2:60341164-60341183 Msa0081670:intron 15.0%
!! TTTCATTGAAAAAAACAGAA+AGG - chr1_2:60341155-60341174 None:intergenic 20.0%
!!! GATATTGTGTTATTTAATGA+AGG + chr1_2:60341203-60341222 Msa0081670:intron 20.0%
!! ACAATGAAATAAAGAACTAT+TGG + chr1_2:60341263-60341282 Msa0081670:CDS 20.0%
!! AAACGTATCTTACAATTTAA+TGG + chr1_2:60341561-60341580 Msa0081670:CDS 20.0%
!! TTTCATTGAAAAAAACAGAA+AGG - chr1_2:60341155-60341174 None:intergenic 20.0%
!!! GATATTGTGTTATTTAATGA+AGG + chr1_2:60341203-60341222 Msa0081670:intron 20.0%
!! ACAATGAAATAAAGAACTAT+TGG + chr1_2:60341263-60341282 Msa0081670:CDS 20.0%
!! AAACGTATCTTACAATTTAA+TGG + chr1_2:60341561-60341580 Msa0081670:CDS 20.0%
!!! ATTGTGTTATTTAATGAAGG+TGG + chr1_2:60341206-60341225 Msa0081670:intron 25.0%
!!! TTACAATTTAATGGATTGTG+CGG + chr1_2:60341570-60341589 Msa0081670:CDS 25.0%
!!! ATTGTGTTATTTAATGAAGG+TGG + chr1_2:60341206-60341225 Msa0081670:intron 25.0%
!!! TTACAATTTAATGGATTGTG+CGG + chr1_2:60341570-60341589 Msa0081670:CDS 25.0%
AAGCCAATATTCATGTAATG+AGG + chr1_2:60340781-60340800 Msa0081670:CDS 30.0%
ACTCCTCATTACATGAATAT+TGG - chr1_2:60340787-60340806 None:intergenic 30.0%
AGATGTAAGTCAAGATACTA+TGG + chr1_2:60340833-60340852 Msa0081670:CDS 30.0%
GATACTATGGTGATAAAGAA+AGG + chr1_2:60340846-60340865 Msa0081670:CDS 30.0%
TACTATTCTGATCAACTATG+TGG + chr1_2:60340890-60340909 Msa0081670:CDS 30.0%
! TAAAATAGCGGAACAATTAC+CGG + chr1_2:60341231-60341250 Msa0081670:CDS 30.0%
ATGTAAACAGTCAACAGTTT+AGG + chr1_2:60341326-60341345 Msa0081670:CDS 30.0%
TGTAAACAGTCAACAGTTTA+GGG + chr1_2:60341327-60341346 Msa0081670:CDS 30.0%
! ATGAGCTTTAGTATTGTTGT+AGG - chr1_2:60341452-60341471 None:intergenic 30.0%
! TTTGAACAGAGCAATGTTTT+TGG + chr1_2:60341646-60341665 Msa0081670:CDS 30.0%
TGTGGACAGATGAAAATATA+TGG + chr1_2:60341680-60341699 Msa0081670:CDS 30.0%
AAGCCAATATTCATGTAATG+AGG + chr1_2:60340781-60340800 Msa0081670:CDS 30.0%
ACTCCTCATTACATGAATAT+TGG - chr1_2:60340787-60340806 None:intergenic 30.0%
AGATGTAAGTCAAGATACTA+TGG + chr1_2:60340833-60340852 Msa0081670:CDS 30.0%
GATACTATGGTGATAAAGAA+AGG + chr1_2:60340846-60340865 Msa0081670:CDS 30.0%
TACTATTCTGATCAACTATG+TGG + chr1_2:60340890-60340909 Msa0081670:CDS 30.0%
! TAAAATAGCGGAACAATTAC+CGG + chr1_2:60341231-60341250 Msa0081670:CDS 30.0%
ATGTAAACAGTCAACAGTTT+AGG + chr1_2:60341326-60341345 Msa0081670:CDS 30.0%
TGTAAACAGTCAACAGTTTA+GGG + chr1_2:60341327-60341346 Msa0081670:CDS 30.0%
! ATGAGCTTTAGTATTGTTGT+AGG - chr1_2:60341452-60341471 None:intergenic 30.0%
! TTTGAACAGAGCAATGTTTT+TGG + chr1_2:60341646-60341665 Msa0081670:CDS 30.0%
TGTGGACAGATGAAAATATA+TGG + chr1_2:60341680-60341699 Msa0081670:CDS 30.0%
!! ATGAGGAGTTTTTCAGATTG+TGG + chr1_2:60340798-60340817 Msa0081670:CDS 35.0%
! CAAGAATCAAGACTTGTTCT+TGG - chr1_2:60341043-60341062 None:intergenic 35.0%
TGTCATTCGTCGAATTATCA+TGG + chr1_2:60341114-60341133 Msa0081670:intron 35.0%
! ATGAAGGTGGTCTAAAATAG+CGG + chr1_2:60341219-60341238 Msa0081670:intron 35.0%
! AAAATAGCGGAACAATTACC+GGG + chr1_2:60341232-60341251 Msa0081670:CDS 35.0%
ATTTCATTGTCTGTTCTTCC+CGG - chr1_2:60341253-60341272 None:intergenic 35.0%
GATACTAATTCCTATAGCCA+CGG + chr1_2:60341415-60341434 Msa0081670:CDS 35.0%
! AGCTTTAGTATTGTTGTAGG+TGG - chr1_2:60341449-60341468 None:intergenic 35.0%
AAAGCTCATAGTGAAACTTG+TGG + chr1_2:60341463-60341482 Msa0081670:CDS 35.0%
AAGCTCATAGTGAAACTTGT+GGG + chr1_2:60341464-60341483 Msa0081670:CDS 35.0%
CATTGCTCTGTTCAAATTCT+TGG - chr1_2:60341642-60341661 None:intergenic 35.0%
!! ATGAGGAGTTTTTCAGATTG+TGG + chr1_2:60340798-60340817 Msa0081670:CDS 35.0%
! CAAGAATCAAGACTTGTTCT+TGG - chr1_2:60341043-60341062 None:intergenic 35.0%
TGTCATTCGTCGAATTATCA+TGG + chr1_2:60341114-60341133 Msa0081670:intron 35.0%
! ATGAAGGTGGTCTAAAATAG+CGG + chr1_2:60341219-60341238 Msa0081670:intron 35.0%
! AAAATAGCGGAACAATTACC+GGG + chr1_2:60341232-60341251 Msa0081670:CDS 35.0%
ATTTCATTGTCTGTTCTTCC+CGG - chr1_2:60341253-60341272 None:intergenic 35.0%
GATACTAATTCCTATAGCCA+CGG + chr1_2:60341415-60341434 Msa0081670:CDS 35.0%
! AGCTTTAGTATTGTTGTAGG+TGG - chr1_2:60341449-60341468 None:intergenic 35.0%
AAAGCTCATAGTGAAACTTG+TGG + chr1_2:60341463-60341482 Msa0081670:CDS 35.0%
AAGCTCATAGTGAAACTTGT+GGG + chr1_2:60341464-60341483 Msa0081670:CDS 35.0%
CATTGCTCTGTTCAAATTCT+TGG - chr1_2:60341642-60341661 None:intergenic 35.0%
TGGTGATAAAGAAAGGTCCA+TGG + chr1_2:60340853-60340872 Msa0081670:CDS 40.0%
! TCTTAATCTGCAGCTTTTCC+CGG - chr1_2:60340973-60340992 None:intergenic 40.0%
GGAAAAGCTGCAGATTAAGA+TGG + chr1_2:60340973-60340992 Msa0081670:CDS 40.0%
TTCTTGATCTTCATTCCCGT+TGG + chr1_2:60341057-60341076 Msa0081670:CDS 40.0%
TCTTGATCTTCATTCCCGTT+GGG + chr1_2:60341058-60341077 Msa0081670:CDS 40.0%
GAACTATTGGAGAACAAGAG+TGG + chr1_2:60341276-60341295 Msa0081670:CDS 40.0%
AGCTCATAGTGAAACTTGTG+GGG + chr1_2:60341465-60341484 Msa0081670:CDS 40.0%
!! TTTAATGGATTGTGCGGAAC+TGG + chr1_2:60341576-60341595 Msa0081670:CDS 40.0%
!! TTAATGGATTGTGCGGAACT+GGG + chr1_2:60341577-60341596 Msa0081670:CDS 40.0%
!!! GAACAGAGCAATGTTTTTGG+TGG + chr1_2:60341649-60341668 Msa0081670:CDS 40.0%
!!! GAGCAATGTTTTTGGTGGTT+CGG + chr1_2:60341654-60341673 Msa0081670:CDS 40.0%
!! TTTTTGGTGGTTCGGAATTG+TGG + chr1_2:60341662-60341681 Msa0081670:CDS 40.0%
TGGTGATAAAGAAAGGTCCA+TGG + chr1_2:60340853-60340872 Msa0081670:CDS 40.0%
! TCTTAATCTGCAGCTTTTCC+CGG - chr1_2:60340973-60340992 None:intergenic 40.0%
GGAAAAGCTGCAGATTAAGA+TGG + chr1_2:60340973-60340992 Msa0081670:CDS 40.0%
TTCTTGATCTTCATTCCCGT+TGG + chr1_2:60341057-60341076 Msa0081670:CDS 40.0%
TCTTGATCTTCATTCCCGTT+GGG + chr1_2:60341058-60341077 Msa0081670:CDS 40.0%
GAACTATTGGAGAACAAGAG+TGG + chr1_2:60341276-60341295 Msa0081670:CDS 40.0%
AGCTCATAGTGAAACTTGTG+GGG + chr1_2:60341465-60341484 Msa0081670:CDS 40.0%
!! TTTAATGGATTGTGCGGAAC+TGG + chr1_2:60341576-60341595 Msa0081670:CDS 40.0%
!! TTAATGGATTGTGCGGAACT+GGG + chr1_2:60341577-60341596 Msa0081670:CDS 40.0%
!!! GAACAGAGCAATGTTTTTGG+TGG + chr1_2:60341649-60341668 Msa0081670:CDS 40.0%
!!! GAGCAATGTTTTTGGTGGTT+CGG + chr1_2:60341654-60341673 Msa0081670:CDS 40.0%
!! TTTTTGGTGGTTCGGAATTG+TGG + chr1_2:60341662-60341681 Msa0081670:CDS 40.0%
ATCAACTATGTGGCAGTCCA+CGG + chr1_2:60340900-60340919 Msa0081670:CDS 45.0%
TGTTCGGGTCTAAAGAGAAC+CGG + chr1_2:60340951-60340970 Msa0081670:CDS 45.0%
ATGTTCCCACGTCGAACATT+TGG - chr1_2:60341014-60341033 None:intergenic 45.0%
CTTGATCTTCATTCCCGTTG+GGG + chr1_2:60341059-60341078 Msa0081670:CDS 45.0%
TTCGACGAATGACATTGACG+TGG - chr1_2:60341108-60341127 None:intergenic 45.0%
GGGACACATTGCGTTTAGTA+TGG + chr1_2:60341347-60341366 Msa0081670:CDS 45.0%
CTACAGTTGCACGAGAAGTT+TGG - chr1_2:60341396-60341415 None:intergenic 45.0%
GAAACCTCTGACTGCAACAT+GGG - chr1_2:60341505-60341524 None:intergenic 45.0%
TGAAACCTCTGACTGCAACA+TGG - chr1_2:60341506-60341525 None:intergenic 45.0%
AGGTTTCATCGTACTCGTCA+GGG + chr1_2:60341518-60341537 Msa0081670:CDS 45.0%
ATCAACTATGTGGCAGTCCA+CGG + chr1_2:60340900-60340919 Msa0081670:CDS 45.0%
TGTTCGGGTCTAAAGAGAAC+CGG + chr1_2:60340951-60340970 Msa0081670:CDS 45.0%
ATGTTCCCACGTCGAACATT+TGG - chr1_2:60341014-60341033 None:intergenic 45.0%
CTTGATCTTCATTCCCGTTG+GGG + chr1_2:60341059-60341078 Msa0081670:CDS 45.0%
TTCGACGAATGACATTGACG+TGG - chr1_2:60341108-60341127 None:intergenic 45.0%
GGGACACATTGCGTTTAGTA+TGG + chr1_2:60341347-60341366 Msa0081670:CDS 45.0%
CTACAGTTGCACGAGAAGTT+TGG - chr1_2:60341396-60341415 None:intergenic 45.0%
GAAACCTCTGACTGCAACAT+GGG - chr1_2:60341505-60341524 None:intergenic 45.0%
TGAAACCTCTGACTGCAACA+TGG - chr1_2:60341506-60341525 None:intergenic 45.0%
AGGTTTCATCGTACTCGTCA+GGG + chr1_2:60341518-60341537 Msa0081670:CDS 45.0%
GAAAGGTCCATGGACAGAAG+AGG + chr1_2:60340863-60340882 Msa0081670:CDS 50.0%
GTATCCTCCTCTTCTGTCCA+TGG - chr1_2:60340873-60340892 None:intergenic 50.0%
GTTCGGGTCTAAAGAGAACC+GGG + chr1_2:60340952-60340971 Msa0081670:CDS 50.0%
TTGCGTCCAAATGTTCGACG+TGG + chr1_2:60341005-60341024 Msa0081670:CDS 50.0%
TGCGTCCAAATGTTCGACGT+GGG + chr1_2:60341006-60341025 Msa0081670:CDS 50.0%
TTCATTCCCGTTGGGGCAAT+CGG + chr1_2:60341066-60341085 Msa0081670:CDS 50.0%
!! ATACGTACCGATTGCCCCAA+CGG - chr1_2:60341076-60341095 None:intergenic 50.0%
CAAGAGTGGTGAAGCAAGCT+AGG + chr1_2:60341290-60341309 Msa0081670:CDS 50.0%
TGGATTCTCTCGATGAGACG+TGG - chr1_2:60341376-60341395 None:intergenic 50.0%
! GGTGATTTGTCCGTGGCTAT+AGG - chr1_2:60341428-60341447 None:intergenic 50.0%
! TGTAGGTGGTGATTTGTCCG+TGG - chr1_2:60341435-60341454 None:intergenic 50.0%
GAGGTTTCATCGTACTCGTC+AGG + chr1_2:60341517-60341536 Msa0081670:CDS 50.0%
GGTTTCATCGTACTCGTCAG+GGG + chr1_2:60341519-60341538 Msa0081670:CDS 50.0%
GAAAGGTCCATGGACAGAAG+AGG + chr1_2:60340863-60340882 Msa0081670:CDS 50.0%
GTATCCTCCTCTTCTGTCCA+TGG - chr1_2:60340873-60340892 None:intergenic 50.0%
GTTCGGGTCTAAAGAGAACC+GGG + chr1_2:60340952-60340971 Msa0081670:CDS 50.0%
TTGCGTCCAAATGTTCGACG+TGG + chr1_2:60341005-60341024 Msa0081670:CDS 50.0%
TGCGTCCAAATGTTCGACGT+GGG + chr1_2:60341006-60341025 Msa0081670:CDS 50.0%
TTCATTCCCGTTGGGGCAAT+CGG + chr1_2:60341066-60341085 Msa0081670:CDS 50.0%
!! ATACGTACCGATTGCCCCAA+CGG - chr1_2:60341076-60341095 None:intergenic 50.0%
CAAGAGTGGTGAAGCAAGCT+AGG + chr1_2:60341290-60341309 Msa0081670:CDS 50.0%
TGGATTCTCTCGATGAGACG+TGG - chr1_2:60341376-60341395 None:intergenic 50.0%
! GGTGATTTGTCCGTGGCTAT+AGG - chr1_2:60341428-60341447 None:intergenic 50.0%
! TGTAGGTGGTGATTTGTCCG+TGG - chr1_2:60341435-60341454 None:intergenic 50.0%
GAGGTTTCATCGTACTCGTC+AGG + chr1_2:60341517-60341536 Msa0081670:CDS 50.0%
GGTTTCATCGTACTCGTCAG+GGG + chr1_2:60341519-60341538 Msa0081670:CDS 50.0%
AGGTCCATGGACAGAAGAGG+AGG + chr1_2:60340866-60340885 Msa0081670:CDS 55.0%
TATGTGGCAGTCCACGGAGA+TGG + chr1_2:60340906-60340925 Msa0081670:CDS 55.0%
AGTTCCAGTGACCATCTCCG+TGG - chr1_2:60340920-60340939 None:intergenic 55.0%
!! TACGTACCGATTGCCCCAAC+GGG - chr1_2:60341075-60341094 None:intergenic 55.0%
TCCTCCCATGTTGCAGTCAG+AGG + chr1_2:60341498-60341517 Msa0081670:CDS 55.0%
ACCTCTGACTGCAACATGGG+AGG - chr1_2:60341502-60341521 None:intergenic 55.0%
AGGTCCATGGACAGAAGAGG+AGG + chr1_2:60340866-60340885 Msa0081670:CDS 55.0%
TATGTGGCAGTCCACGGAGA+TGG + chr1_2:60340906-60340925 Msa0081670:CDS 55.0%
AGTTCCAGTGACCATCTCCG+TGG - chr1_2:60340920-60340939 None:intergenic 55.0%
!! TACGTACCGATTGCCCCAAC+GGG - chr1_2:60341075-60341094 None:intergenic 55.0%
TCCTCCCATGTTGCAGTCAG+AGG + chr1_2:60341498-60341517 Msa0081670:CDS 55.0%
ACCTCTGACTGCAACATGGG+AGG - chr1_2:60341502-60341521 None:intergenic 55.0%
CAGTCCACGGAGATGGTCAC+TGG + chr1_2:60340913-60340932 Msa0081670:CDS 60.0%
GAACTCCGTCGCTCGCTGTT+CGG + chr1_2:60340935-60340954 Msa0081670:CDS 60.0%
AACTCCGTCGCTCGCTGTTC+GGG + chr1_2:60340936-60340955 Msa0081670:CDS 60.0%
TAGACCCGAACAGCGAGCGA+CGG - chr1_2:60340943-60340962 None:intergenic 60.0%
GGAACTGGGATCCACGTTGC+AGG + chr1_2:60341591-60341610 Msa0081670:CDS 60.0%
TGGGATCCACGTTGCAGGAG+TGG + chr1_2:60341596-60341615 Msa0081670:CDS 60.0%
GCAGTTCCACTCCTGCAACG+TGG - chr1_2:60341605-60341624 None:intergenic 60.0%
CAGTCCACGGAGATGGTCAC+TGG + chr1_2:60340913-60340932 Msa0081670:CDS 60.0%
GAACTCCGTCGCTCGCTGTT+CGG + chr1_2:60340935-60340954 Msa0081670:CDS 60.0%
AACTCCGTCGCTCGCTGTTC+GGG + chr1_2:60340936-60340955 Msa0081670:CDS 60.0%
TAGACCCGAACAGCGAGCGA+CGG - chr1_2:60340943-60340962 None:intergenic 60.0%
GGAACTGGGATCCACGTTGC+AGG + chr1_2:60341591-60341610 Msa0081670:CDS 60.0%
TGGGATCCACGTTGCAGGAG+TGG + chr1_2:60341596-60341615 Msa0081670:CDS 60.0%
GCAGTTCCACTCCTGCAACG+TGG - chr1_2:60341605-60341624 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 60340765 60341735 60340765 ID=Msa0081670;Name=Msa0081670
chr1_2 mRNA 60340765 60341735 60340765 ID=Msa0081670-mRNA-1;Parent=Msa0081670;Name=Msa0081670-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|1|0|1|1|1|2|0|277
chr1_2 exon 60340765 60341087 60340765 ID=Msa0081670-mRNA-1:exon:19647;Parent=Msa0081670-mRNA-1
chr1_2 exon 60341225 60341735 60341225 ID=Msa0081670-mRNA-1:exon:19648;Parent=Msa0081670-mRNA-1
chr1_2 CDS 60340765 60341087 60340765 ID=Msa0081670-mRNA-1:cds;Parent=Msa0081670-mRNA-1
chr1_2 CDS 60341225 60341735 60341225 ID=Msa0081670-mRNA-1:cds;Parent=Msa0081670-mRNA-1
Gene Sequence

>Msa0081670

ATGGATACTAATTACAAAGCCAATATTCATGTAATGAGGAGTTTTTCAGATTGTGGTTCATCAGTAACAGATGTAAGTCAAGATACTATGGTGATAAAGAAAGGTCCATGGACAGAAGAGGAGGATACTATTCTGATCAACTATGTGGCAGTCCACGGAGATGGTCACTGGAACTCCGTCGCTCGCTGTTCGGGTCTAAAGAGAACCGGGAAAAGCTGCAGATTAAGATGGTTGAACTACTTGCGTCCAAATGTTCGACGTGGGAACATCACTCTCCAAGAACAAGTCTTGATTCTTGATCTTCATTCCCGTTGGGGCAATCGGTGGTCTAAAATAGCGGAACAATTACCGGGAAGAACAGACAATGAAATAAAGAACTATTGGAGAACAAGAGTGGTGAAGCAAGCTAGGCAACTAAAATGTGATGTAAACAGTCAACAGTTTAGGGACACATTGCGTTTAGTATGGATTCCACGTCTCATCGAGAGAATCCAAACTTCTCGTGCAACTGTAGATACTAATTCCTATAGCCACGGACAAATCACCACCTACAACAATACTAAAGCTCATAGTGAAACTTGTGGGGCAAATGCAAATCCTCCCATGTTGCAGTCAGAGGTTTCATCGTACTCGTCAGGGGTTGATGTTCAAGTAGAATCAAACGTATCTTACAATTTAATGGATTGTGCGGAACTGGGATCCACGTTGCAGGAGTGGAACTGCTTAGACTCAAACATCCAAGAATTTGAACAGAGCAATGTTTTTGGTGGTTCGGAATTGTGGACAGATGAAAATATATGGTTCTTGCAGCAGCAACTTGCTGATGATTTATGA
Protein sequence

>Msa0081670

MDTNYKANIHVMRSFSDCGSSVTDVSQDTMVIKKGPWTEEEDTILINYVAVHGDGHWNSVARCSGLKRTGKSCRLRWLNYLRPNVRRGNITLQEQVLILDLHSRWGNRWSKIAEQLPGRTDNEIKNYWRTRVVKQARQLKCDVNSQQFRDTLRLVWIPRLIERIQTSRATVDTNSYSHGQITTYNNTKAHSETCGANANPPMLQSEVSSYSSGVDVQVESNVSYNLMDCAELGSTLQEWNCLDSNIQEFEQSNVFGGSELWTDENIWFLQQQLADDL*