Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0082120 | GAU40839.1 | 53.899 | 436 | 92 | 10 | 218 | 558 | 404 | 825 | 1.09e-135 | 428 |
| Msa0082120 | GAU40839.1 | 62.054 | 224 | 69 | 3 | 8 | 217 | 30 | 251 | 5.27e-82 | 287 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0082120 | sp|Q9LIE5|FHY3_ARATH | 41.221 | 131 | 73 | 1 | 219 | 345 | 409 | 539 | 8.40e-25 | 113 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0082120 | A0A2Z6P9Q3 | 53.899 | 436 | 92 | 10 | 218 | 558 | 404 | 825 | 5.22e-136 | 428 |
| Msa0082120 | A0A2Z6P9Q3 | 62.054 | 224 | 69 | 3 | 8 | 217 | 30 | 251 | 2.52e-82 | 287 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0082120 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0082120 | MtrunA17_Chr6g0477261 | 48.463 | 423 | 114 | 11 | 215 | 534 | 225 | 646 | 1.15e-106 | 337 |
| Msa0082120 | MtrunA17_Chr6g0477261 | 87.500 | 72 | 9 | 0 | 146 | 217 | 4 | 75 | 5.13e-34 | 138 |
| Msa0082120 | MtrunA17_Chr1g0196541 | 44.342 | 433 | 115 | 10 | 218 | 564 | 339 | 731 | 2.22e-99 | 320 |
| Msa0082120 | MtrunA17_Chr1g0196541 | 54.098 | 183 | 70 | 2 | 48 | 216 | 3 | 185 | 1.90e-54 | 198 |
| Msa0082120 | MtrunA17_Chr2g0296781 | 51.444 | 381 | 91 | 11 | 215 | 502 | 336 | 715 | 2.97e-97 | 314 |
| Msa0082120 | MtrunA17_Chr2g0296781 | 71.739 | 184 | 38 | 2 | 48 | 217 | 3 | 186 | 6.06e-82 | 274 |
| Msa0082120 | MtrunA17_Chr6g0476441 | 44.737 | 266 | 88 | 6 | 334 | 541 | 25 | 289 | 5.92e-52 | 181 |
| Msa0082120 | MtrunA17_Chr5g0441581 | 54.478 | 134 | 57 | 1 | 220 | 349 | 369 | 502 | 2.21e-38 | 151 |
| Msa0082120 | MtrunA17_Chr5g0441581 | 31.687 | 243 | 135 | 8 | 28 | 258 | 15 | 238 | 1.06e-22 | 103 |
| Msa0082120 | MtrunA17_Chr6g0476431 | 59.302 | 86 | 30 | 1 | 48 | 128 | 3 | 88 | 1.55e-28 | 109 |
| Msa0082120 | MtrunA17_Chr1g0207551 | 44.800 | 125 | 65 | 1 | 220 | 340 | 381 | 505 | 6.25e-25 | 110 |
| Msa0082120 | MtrunA17_Chr1g0207551 | 28.293 | 205 | 131 | 4 | 39 | 227 | 31 | 235 | 5.68e-14 | 75.5 |
| Msa0082120 | MtrunA17_Chr3g0080351 | 36.879 | 141 | 85 | 1 | 219 | 355 | 414 | 554 | 4.02e-23 | 104 |
| Msa0082120 | MtrunA17_Chr3g0080351 | 27.861 | 201 | 107 | 6 | 41 | 218 | 75 | 260 | 2.22e-11 | 67.4 |
| Msa0082120 | MtrunA17_Chr5g0448761 | 40.476 | 126 | 71 | 1 | 219 | 340 | 415 | 540 | 4.97e-23 | 104 |
| Msa0082120 | MtrunA17_Chr5g0448761 | 26.961 | 204 | 123 | 8 | 39 | 218 | 57 | 258 | 2.13e-11 | 67.4 |
| Msa0082120 | MtrunA17_Chr2g0329031 | 36.913 | 149 | 86 | 2 | 208 | 348 | 338 | 486 | 1.04e-21 | 100 |
| Msa0082120 | MtrunA17_Chr2g0329031 | 30.769 | 182 | 113 | 4 | 48 | 218 | 20 | 199 | 2.10e-15 | 80.1 |
| Msa0082120 | MtrunA17_Chr2g0291581 | 35.570 | 149 | 90 | 2 | 194 | 338 | 381 | 527 | 7.21e-21 | 97.4 |
| Msa0082120 | MtrunA17_Chr2g0291581 | 27.473 | 182 | 124 | 3 | 42 | 217 | 71 | 250 | 1.34e-13 | 74.3 |
| Msa0082120 | MtrunA17_Chr1g0202341 | 35.417 | 144 | 87 | 2 | 201 | 340 | 383 | 524 | 5.81e-20 | 94.4 |
| Msa0082120 | MtrunA17_Chr5g0440451 | 26.792 | 265 | 133 | 4 | 219 | 424 | 396 | 658 | 9.19e-17 | 84.7 |
| Msa0082120 | MtrunA17_Chr3g0118611 | 33.824 | 136 | 84 | 2 | 219 | 350 | 293 | 426 | 1.76e-16 | 83.6 |
| Msa0082120 | MtrunA17_Chr6g0451441 | 28.926 | 242 | 142 | 9 | 10 | 227 | 52 | 287 | 2.41e-16 | 82.4 |
| Msa0082120 | MtrunA17_Chr5g0448511 | 32.540 | 126 | 81 | 1 | 219 | 340 | 187 | 312 | 2.52e-15 | 79.3 |
| Msa0082120 | MtrunA17_Chr2g0291591 | 32.824 | 131 | 84 | 1 | 219 | 345 | 407 | 537 | 1.99e-14 | 76.6 |
| Msa0082120 | MtrunA17_Chr2g0291591 | 25.483 | 259 | 158 | 7 | 18 | 256 | 39 | 282 | 1.50e-12 | 70.5 |
| Msa0082120 | MtrunA17_Chr3g0077731 | 46.296 | 108 | 45 | 4 | 407 | 502 | 1 | 107 | 7.03e-13 | 65.9 |
| Msa0082120 | MtrunA17_Chr7g0258861 | 25.472 | 212 | 139 | 4 | 39 | 231 | 7 | 218 | 1.37e-12 | 69.3 |
| Msa0082120 | MtrunA17_Chr8g0363841 | 26.852 | 216 | 136 | 5 | 38 | 231 | 10 | 225 | 1.50e-12 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0082120 | AT3G22170.2 | 41.221 | 131 | 73 | 1 | 219 | 345 | 409 | 539 | 8.54e-26 | 113 |
| Msa0082120 | AT3G22170.1 | 41.221 | 131 | 73 | 1 | 219 | 345 | 409 | 539 | 8.54e-26 | 113 |
| Msa0082120 | AT4G15090.1 | 37.423 | 163 | 86 | 2 | 199 | 345 | 368 | 530 | 2.44e-24 | 108 |
| Msa0082120 | AT4G15090.1 | 27.197 | 239 | 138 | 8 | 39 | 258 | 48 | 269 | 1.63e-16 | 84.3 |
| Msa0082120 | AT4G15090.5 | 37.423 | 163 | 86 | 2 | 199 | 345 | 368 | 530 | 2.44e-24 | 108 |
| Msa0082120 | AT4G15090.5 | 27.197 | 239 | 138 | 8 | 39 | 258 | 48 | 269 | 1.63e-16 | 84.3 |
| Msa0082120 | AT4G15090.3 | 37.423 | 163 | 86 | 2 | 199 | 345 | 368 | 530 | 2.44e-24 | 108 |
| Msa0082120 | AT4G15090.3 | 27.197 | 239 | 138 | 8 | 39 | 258 | 48 | 269 | 1.63e-16 | 84.3 |
| Msa0082120 | AT4G15090.2 | 37.423 | 163 | 86 | 2 | 199 | 345 | 368 | 530 | 2.44e-24 | 108 |
| Msa0082120 | AT4G15090.2 | 27.197 | 239 | 138 | 8 | 39 | 258 | 48 | 269 | 1.63e-16 | 84.3 |
| Msa0082120 | AT4G15090.4 | 37.423 | 163 | 86 | 2 | 199 | 345 | 368 | 530 | 2.44e-24 | 108 |
| Msa0082120 | AT4G15090.4 | 27.197 | 239 | 138 | 8 | 39 | 258 | 48 | 269 | 1.63e-16 | 84.3 |
| Msa0082120 | AT4G38180.1 | 37.013 | 154 | 85 | 2 | 199 | 340 | 396 | 549 | 4.90e-24 | 108 |
| Msa0082120 | AT4G38180.1 | 25.806 | 217 | 136 | 7 | 25 | 218 | 56 | 270 | 2.45e-11 | 67.4 |
| Msa0082120 | AT1G76320.1 | 37.594 | 133 | 79 | 1 | 219 | 347 | 337 | 469 | 2.62e-20 | 96.3 |
| Msa0082120 | AT1G76320.1 | 32.979 | 188 | 111 | 7 | 48 | 222 | 3 | 188 | 1.35e-19 | 94.0 |
| Msa0082120 | AT1G76320.4 | 37.594 | 133 | 79 | 1 | 219 | 347 | 337 | 469 | 2.62e-20 | 96.3 |
| Msa0082120 | AT1G76320.4 | 32.979 | 188 | 111 | 7 | 48 | 222 | 3 | 188 | 1.35e-19 | 94.0 |
| Msa0082120 | AT1G76320.2 | 37.594 | 133 | 79 | 1 | 219 | 347 | 337 | 469 | 2.68e-20 | 96.3 |
| Msa0082120 | AT1G76320.2 | 32.979 | 188 | 111 | 7 | 48 | 222 | 3 | 188 | 1.42e-19 | 94.0 |
| Msa0082120 | AT1G76320.3 | 37.594 | 133 | 79 | 1 | 219 | 347 | 337 | 469 | 3.22e-20 | 95.9 |
| Msa0082120 | AT1G76320.3 | 32.979 | 188 | 111 | 7 | 48 | 222 | 3 | 188 | 1.55e-19 | 93.6 |
| Msa0082120 | AT1G52520.1 | 32.000 | 150 | 95 | 3 | 194 | 338 | 397 | 544 | 2.01e-18 | 90.1 |
| Msa0082120 | AT4G19990.1 | 36.641 | 131 | 79 | 1 | 219 | 345 | 291 | 421 | 3.85e-17 | 85.9 |
| Msa0082120 | AT4G38170.1 | 32.000 | 125 | 81 | 1 | 218 | 338 | 188 | 312 | 3.98e-17 | 85.5 |
| Msa0082120 | AT4G19990.6 | 36.641 | 131 | 79 | 1 | 219 | 345 | 348 | 478 | 4.62e-17 | 85.9 |
| Msa0082120 | AT4G19990.2 | 36.641 | 131 | 79 | 1 | 219 | 345 | 348 | 478 | 4.62e-17 | 85.9 |
| Msa0082120 | AT4G19990.3 | 36.641 | 131 | 79 | 1 | 219 | 345 | 348 | 478 | 4.79e-17 | 85.9 |
| Msa0082120 | AT4G19990.4 | 36.641 | 131 | 79 | 1 | 219 | 345 | 348 | 478 | 4.79e-17 | 85.9 |
| Msa0082120 | AT4G19990.5 | 36.641 | 131 | 79 | 1 | 219 | 345 | 348 | 478 | 5.00e-17 | 85.9 |
| Msa0082120 | AT4G19990.7 | 36.641 | 131 | 79 | 1 | 219 | 345 | 362 | 492 | 5.21e-17 | 85.9 |
| Msa0082120 | AT2G32250.2 | 36.090 | 133 | 81 | 1 | 220 | 348 | 345 | 477 | 3.67e-16 | 83.2 |
| Msa0082120 | AT2G32250.4 | 36.090 | 133 | 81 | 1 | 220 | 348 | 345 | 477 | 3.67e-16 | 83.2 |
| Msa0082120 | AT2G32250.7 | 36.090 | 133 | 81 | 1 | 220 | 348 | 304 | 436 | 3.72e-16 | 82.8 |
| Msa0082120 | AT2G32250.6 | 36.090 | 133 | 81 | 1 | 220 | 348 | 345 | 477 | 3.94e-16 | 82.8 |
| Msa0082120 | AT2G32250.1 | 36.090 | 133 | 81 | 1 | 220 | 348 | 345 | 477 | 3.94e-16 | 82.8 |
| Msa0082120 | AT2G32250.3 | 36.090 | 133 | 81 | 1 | 220 | 348 | 345 | 477 | 3.94e-16 | 82.8 |
| Msa0082120 | AT2G32250.5 | 36.090 | 133 | 81 | 1 | 220 | 348 | 345 | 477 | 3.97e-16 | 82.8 |
| Msa0082120 | AT2G32250.8 | 36.090 | 133 | 81 | 1 | 220 | 348 | 304 | 436 | 4.09e-16 | 82.8 |
| Msa0082120 | AT2G27110.2 | 32.414 | 145 | 89 | 3 | 219 | 356 | 371 | 513 | 5.57e-14 | 76.3 |
| Msa0082120 | AT2G27110.1 | 32.414 | 145 | 89 | 3 | 219 | 356 | 371 | 513 | 5.57e-14 | 76.3 |
| Msa0082120 | AT2G27110.3 | 32.414 | 145 | 89 | 3 | 219 | 356 | 226 | 368 | 5.91e-14 | 75.9 |
| Msa0082120 | AT1G80010.1 | 33.600 | 125 | 78 | 2 | 219 | 338 | 445 | 569 | 1.92e-12 | 70.9 |
| Msa0082120 | AT5G18960.2 | 31.298 | 131 | 87 | 2 | 219 | 346 | 521 | 651 | 2.85e-12 | 70.5 |
| Msa0082120 | AT5G18960.1 | 31.298 | 131 | 87 | 2 | 219 | 346 | 521 | 651 | 2.85e-12 | 70.5 |
Find 95 sgRNAs with CRISPR-Local
Find 249 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCATTGGTGAATGCTTTC+TGG | 0.174694 | 1_2:+60927963 | None:intergenic |
| TCACTCATAAGTATTGAATT+TGG | 0.202186 | 1_2:+60926959 | None:intergenic |
| AAGGAAAACAAGGCTGATTT+TGG | 0.221363 | 1_2:-60928040 | Msa0082120:CDS |
| ATAGCTTGTATAAGTCATTT+TGG | 0.235588 | 1_2:-60928001 | Msa0082120:CDS |
| CAAGAGTTATGCCCAATCTA+TGG | 0.242427 | 1_2:-60929268 | Msa0082120:CDS |
| AATGCATGTATTTCTTTAGA+TGG | 0.249459 | 1_2:-60929093 | Msa0082120:CDS |
| CTTTGTGTTCTTAAGTTAAC+AGG | 0.271995 | 1_2:-60927719 | Msa0082120:CDS |
| CTAAAATAGCGTGCTTTGTC+AGG | 0.272247 | 1_2:+60929021 | None:intergenic |
| CTAGTATTTCATGTTCCTTT+TGG | 0.276527 | 1_2:-60925993 | Msa0082120:CDS |
| TTTGAGTAAGAGTGATTTCA+TGG | 0.279123 | 1_2:-60928302 | Msa0082120:intron |
| CCTTTACTTCGAGTCGGTAT+AGG | 0.287148 | 1_2:+60927395 | None:intergenic |
| CATATGTAAGAGACACGTTT+TGG | 0.291042 | 1_2:-60928189 | Msa0082120:CDS |
| TATGCCCAATCTATGGGTTT+TGG | 0.292447 | 1_2:-60929261 | Msa0082120:CDS |
| GTCAAGTGCTTGACAAGTTT+TGG | 0.299935 | 1_2:-60926465 | Msa0082120:CDS |
| GCTGTCATGTGCTGGACTTT+TGG | 0.312340 | 1_2:-60926548 | Msa0082120:CDS |
| TATCTAACTAAAACAGTTCC+AGG | 0.321980 | 1_2:+60925882 | None:intergenic |
| CTGCTGCTGCTGTCATGTGC+TGG | 0.324880 | 1_2:-60926556 | Msa0082120:CDS |
| GCCAGGGGATGCTTCTTTAG+AGG | 0.353219 | 1_2:+60927466 | None:intergenic |
| TCAGCTAGAACTTGTTCATC+AGG | 0.360631 | 1_2:-60925955 | Msa0082120:CDS |
| CTTTACTTCGAGTCGGTATA+GGG | 0.362130 | 1_2:+60927396 | None:intergenic |
| TACCTGTAACAATTCAAAAT+AGG | 0.379552 | 1_2:+60926807 | None:intergenic |
| TTCATGACTTGAGAATAAAA+TGG | 0.385023 | 1_2:+60926841 | None:intergenic |
| TCTAGCTGACAACAATTTGC+AGG | 0.385340 | 1_2:+60925969 | None:intergenic |
| TAACTCCAAAACCCATAGAT+TGG | 0.409903 | 1_2:+60929256 | None:intergenic |
| AAGTGAGGAGACTACGACTT+GGG | 0.414907 | 1_2:-60928840 | Msa0082120:CDS |
| CATGAAAATAAGATTTCAAA+AGG | 0.415528 | 1_2:-60925909 | Msa0082120:CDS |
| AAGGGCGTCCTCCTTCAAAA+AGG | 0.415773 | 1_2:-60927376 | Msa0082120:CDS |
| TTTGGGCTTGTTGACCTCCT+TGG | 0.420428 | 1_2:-60926525 | Msa0082120:CDS |
| ACTTATGAGTGAAGTAAATC+AGG | 0.421958 | 1_2:-60926948 | Msa0082120:intron |
| AATTAAAGATATAGTGTTTG+AGG | 0.424835 | 1_2:-60927822 | Msa0082120:intron |
| CAACAATTTGCAGGCCCAAA+AGG | 0.437800 | 1_2:+60925978 | None:intergenic |
| TATTCTCAAGTCATGAATCA+TGG | 0.442758 | 1_2:-60926835 | Msa0082120:CDS |
| AAGTATTGAATTTGGATTGA+AGG | 0.452798 | 1_2:+60926967 | None:intergenic |
| ATTTGATGAAAGAAATCGTT+GGG | 0.454237 | 1_2:-60928218 | Msa0082120:CDS |
| CATTCAATCTAGCCTTGCAC+TGG | 0.454810 | 1_2:+60929112 | None:intergenic |
| AACTCCAAAACCCATAGATT+GGG | 0.455626 | 1_2:+60929257 | None:intergenic |
| GAATATGACATTTGGTGAAA+AGG | 0.456326 | 1_2:-60928884 | Msa0082120:CDS |
| GTTCAAGTAGTTGATGTAGT+TGG | 0.457215 | 1_2:-60927165 | Msa0082120:CDS |
| TTGGCCGTCATGTGCTTGAC+AGG | 0.462181 | 1_2:-60926441 | Msa0082120:intron |
| GTTGACCTCCTTGGCAGCAA+AGG | 0.462406 | 1_2:-60926516 | Msa0082120:CDS |
| GGCTATGAGAATATGACATT+TGG | 0.466582 | 1_2:-60928892 | Msa0082120:CDS |
| ACTTAAAACCTTTGCTGCCA+AGG | 0.468326 | 1_2:+60926508 | None:intergenic |
| AAGATTTCAAAAGGGAAGCC+TGG | 0.468615 | 1_2:-60925900 | Msa0082120:CDS |
| ATTGAGAGATAAAGTTGAAA+AGG | 0.468812 | 1_2:-60928059 | Msa0082120:CDS |
| AGAGTGATTTCATGGAAAAG+TGG | 0.471372 | 1_2:-60928294 | Msa0082120:CDS |
| CCACTGAGAGAAAATATAAG+AGG | 0.477796 | 1_2:+60927676 | None:intergenic |
| AGTATTGAATTTGGATTGAA+GGG | 0.484124 | 1_2:+60926968 | None:intergenic |
| GAACCATCTTCCACAATGCC+AGG | 0.487132 | 1_2:+60927449 | None:intergenic |
| AACGTGTCTCTTACATATGC+AGG | 0.493519 | 1_2:+60928193 | None:intergenic |
| TGGATCAAAGTATGTGAGTA+AGG | 0.495275 | 1_2:-60929172 | Msa0082120:CDS |
| CTATACCGACTCGAAGTAAA+GGG | 0.496353 | 1_2:-60927394 | Msa0082120:CDS |
| TCATGATAATGAATGGTTGA+AGG | 0.498087 | 1_2:-60928245 | Msa0082120:CDS |
| CATGATAATGAATGGTTGAA+GGG | 0.498314 | 1_2:-60928244 | Msa0082120:CDS |
| TCCCCTGGCATTGTGGAAGA+TGG | 0.500694 | 1_2:-60927452 | Msa0082120:CDS |
| TTGAACTTCATGATAATGAA+TGG | 0.502013 | 1_2:-60928252 | Msa0082120:CDS |
| AAGAGTTATGCCCAATCTAT+GGG | 0.502102 | 1_2:-60929267 | Msa0082120:CDS |
| CCTATACCGACTCGAAGTAA+AGG | 0.502755 | 1_2:-60927395 | Msa0082120:CDS |
| ACCTCTAAAGAAGCATCCCC+TGG | 0.505424 | 1_2:-60927467 | Msa0082120:CDS |
| GAGTGATTTCATGGAAAAGT+GGG | 0.506412 | 1_2:-60928293 | Msa0082120:CDS |
| AGGAGACTACGACTTGGGGC+TGG | 0.514634 | 1_2:-60928835 | Msa0082120:CDS |
| ATTTGTATCTTCTGATGAAG+AGG | 0.520293 | 1_2:-60929409 | Msa0082120:CDS |
| TCAATGGTTGTTGAAGCAAA+TGG | 0.534602 | 1_2:-60928913 | Msa0082120:CDS |
| CAGCTAGAACTTGTTCATCA+GGG | 0.536631 | 1_2:-60925954 | Msa0082120:CDS |
| ATTCAAAGAATTTCAAGTGG+AGG | 0.539575 | 1_2:-60927939 | Msa0082120:intron |
| TAAAATAGCGTGCTTTGTCA+GGG | 0.562727 | 1_2:+60929022 | None:intergenic |
| TTAGAACTCAATGATCAAGC+TGG | 0.567016 | 1_2:-60928961 | Msa0082120:CDS |
| AACCATCTTCCACAATGCCA+GGG | 0.580735 | 1_2:+60927450 | None:intergenic |
| TGAGAGAAAATATAAGAGGA+TGG | 0.581159 | 1_2:+60927680 | None:intergenic |
| AGACATACCCTTGTTAAATG+TGG | 0.581997 | 1_2:-60927635 | Msa0082120:CDS |
| AGAAGCATCCCCTGGCATTG+TGG | 0.590947 | 1_2:-60927459 | Msa0082120:CDS |
| ATGAAAATAAGATTTCAAAA+GGG | 0.592167 | 1_2:-60925908 | Msa0082120:CDS |
| ATTCAATCTAGCCTTGCACT+GGG | 0.599186 | 1_2:+60929113 | None:intergenic |
| TATTTGATGAAAGAAATCGT+TGG | 0.605577 | 1_2:-60928219 | Msa0082120:CDS |
| GATCAAAACCACATTTAACA+AGG | 0.611615 | 1_2:+60927627 | None:intergenic |
| ATGATAATGAATGGTTGAAG+GGG | 0.618077 | 1_2:-60928243 | Msa0082120:CDS |
| GATGAAGAGGAAATCAGAGA+GGG | 0.625109 | 1_2:-60929396 | Msa0082120:CDS |
| TAAAGTTGAAAAGGAAAACA+AGG | 0.627416 | 1_2:-60928050 | Msa0082120:CDS |
| TTAAATATAGTTCCAACCTG+AGG | 0.629130 | 1_2:+60929318 | None:intergenic |
| AGTGAGGAGACTACGACTTG+GGG | 0.641932 | 1_2:-60928839 | Msa0082120:CDS |
| AAAATTCAAAGAATTTCAAG+TGG | 0.644675 | 1_2:-60927942 | Msa0082120:CDS |
| ATCAAAACCACATTTAACAA+GGG | 0.648419 | 1_2:+60927628 | None:intergenic |
| AAAGTGAGGAGACTACGACT+TGG | 0.649574 | 1_2:-60928841 | Msa0082120:CDS |
| GAAACTATATAGATAAAGTG+AGG | 0.649765 | 1_2:-60928855 | Msa0082120:CDS |
| ACTTGGGGCTGGAGATGCTG+AGG | 0.650883 | 1_2:-60928824 | Msa0082120:CDS |
| TTTGGGAGGAATGGACATGG+TGG | 0.651520 | 1_2:-60927007 | Msa0082120:CDS |
| TTTACTCTAGCATGTAGTCG+TGG | 0.653028 | 1_2:-60929192 | Msa0082120:CDS |
| ACCATCTTCCACAATGCCAG+GGG | 0.654020 | 1_2:+60927451 | None:intergenic |
| GGACGCCCTTTACTTCGAGT+CGG | 0.664200 | 1_2:+60927389 | None:intergenic |
| ACAGAGTGGAAATCAACAAG+AGG | 0.665527 | 1_2:-60927288 | Msa0082120:intron |
| CTGTTAACTTAAGAACACAA+AGG | 0.666537 | 1_2:+60927720 | None:intergenic |
| TAAAACCTTTGCTGCCAAGG+AGG | 0.673024 | 1_2:+60926511 | None:intergenic |
| CTTGTACTTTAGATGCACAC+AGG | 0.674948 | 1_2:+60927193 | None:intergenic |
| GAAACCTGTCAAGCACATGA+CGG | 0.675273 | 1_2:+60926437 | None:intergenic |
| TGATGAAGAGGAAATCAGAG+AGG | 0.679814 | 1_2:-60929397 | Msa0082120:CDS |
| ACGACGACAGATCATTCACA+TGG | 0.708827 | 1_2:+60926691 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATTGATTTATCATATAA+TGG | + | chr1_2:60925963-60925982 | None:intergenic | 10.0% |
| !!! | TTTTTAATTTATAGCATTAG+TGG | - | chr1_2:60926091-60926110 | Msa0082120:intron | 15.0% |
| !!! | TTTAATACGTATATGTTTTT+AGG | - | chr1_2:60928486-60928505 | Msa0082120:intron | 15.0% |
| !!! | TTAATACGTATATGTTTTTA+GGG | - | chr1_2:60928487-60928506 | Msa0082120:intron | 15.0% |
| !! | ATGAAAATAAGATTTCAAAA+GGG | - | chr1_2:60929622-60929641 | Msa0082120:intron | 15.0% |
| !! | TAAGTTAACTACCTTAAATT+GGG | - | chr1_2:60925904-60925923 | Msa0082120:CDS | 20.0% |
| !!! | TTTTGATATTGAAACTGATT+TGG | - | chr1_2:60925992-60926011 | Msa0082120:CDS | 20.0% |
| !! | TAAGCATTAAATACAAAACT+AGG | + | chr1_2:60926023-60926042 | None:intergenic | 20.0% |
| !!! | AAATTCTTTGAATTTTGCAT+TGG | + | chr1_2:60927584-60927603 | None:intergenic | 20.0% |
| !! | AAAATTCAAAGAATTTCAAG+TGG | - | chr1_2:60927588-60927607 | Msa0082120:CDS | 20.0% |
| !! | AATTAAAGATATAGTGTTTG+AGG | - | chr1_2:60927708-60927727 | Msa0082120:CDS | 20.0% |
| !!! | AATTCAAAGGTATTTTATGT+AGG | - | chr1_2:60927782-60927801 | Msa0082120:intron | 20.0% |
| !!! | CATTTTAAACAAATCATCAT+CGG | + | chr1_2:60928010-60928029 | None:intergenic | 20.0% |
| !!! | ATGATGATTTGTTTAAAATG+AGG | - | chr1_2:60928010-60928029 | Msa0082120:CDS | 20.0% |
| !!! | ATTTGTTTAAAATGAGGAAT+TGG | - | chr1_2:60928016-60928035 | Msa0082120:CDS | 20.0% |
| !!! | TTGAAATTTTCTTCACAATT+TGG | + | chr1_2:60928197-60928216 | None:intergenic | 20.0% |
| !! | GTCTAATATTCAATACTTAA+TGG | - | chr1_2:60928309-60928328 | Msa0082120:intron | 20.0% |
| !!! | TAATACGTATATGTTTTTAG+GGG | - | chr1_2:60928488-60928507 | Msa0082120:intron | 20.0% |
| !!! | AAGTATTTTCCATGTTATTT+AGG | - | chr1_2:60928664-60928683 | Msa0082120:intron | 20.0% |
| !!! | ATTTTTAAATCTGCTATGTA+AGG | - | chr1_2:60929408-60929427 | Msa0082120:CDS | 20.0% |
| !! | CATGAAAATAAGATTTCAAA+AGG | - | chr1_2:60929621-60929640 | Msa0082120:intron | 20.0% |
| !! | TTTAAGGTAGTTAACTTACT+TGG | + | chr1_2:60925902-60925921 | None:intergenic | 25.0% |
| ! | GTAAGTTAACTACCTTAAAT+TGG | - | chr1_2:60925903-60925922 | Msa0082120:CDS | 25.0% |
| ! | ATACTCAAAAAGTTCATCTT+TGG | + | chr1_2:60926240-60926259 | None:intergenic | 25.0% |
| ! | AGTAACAAAAATACAGATGA+TGG | - | chr1_2:60926305-60926324 | Msa0082120:intron | 25.0% |
| ! | GTAACAAAAATACAGATGAT+GGG | - | chr1_2:60926306-60926325 | Msa0082120:intron | 25.0% |
| ! | AATGCATGTATTTCTTTAGA+TGG | - | chr1_2:60926437-60926456 | Msa0082120:intron | 25.0% |
| !!! | TTTTAGAAGTAGCAAGTTTT+TGG | - | chr1_2:60926526-60926545 | Msa0082120:CDS | 25.0% |
| ! | GAAACTATATAGATAAAGTG+AGG | - | chr1_2:60926675-60926694 | Msa0082120:intron | 25.0% |
| ! | TTTGTGGCATATAATGAAAA+AGG | - | chr1_2:60927132-60927151 | Msa0082120:intron | 25.0% |
| !! | TTGAACTTCATGATAATGAA+TGG | - | chr1_2:60927278-60927297 | Msa0082120:intron | 25.0% |
| ! | TATTTGATGAAAGAAATCGT+TGG | - | chr1_2:60927311-60927330 | Msa0082120:CDS | 25.0% |
| ! | ATTTGATGAAAGAAATCGTT+GGG | - | chr1_2:60927312-60927331 | Msa0082120:CDS | 25.0% |
| ! | ATTGAGAGATAAAGTTGAAA+AGG | - | chr1_2:60927471-60927490 | Msa0082120:CDS | 25.0% |
| ! | TAAAGTTGAAAAGGAAAACA+AGG | - | chr1_2:60927480-60927499 | Msa0082120:CDS | 25.0% |
| !!! | ATAGCTTGTATAAGTCATTT+TGG | - | chr1_2:60927529-60927548 | Msa0082120:intron | 25.0% |
| !! | TGTTGTTTGTTTCAATTCAA+AGG | - | chr1_2:60927769-60927788 | Msa0082120:intron | 25.0% |
| ! | ATCAAAACCACATTTAACAA+GGG | + | chr1_2:60927905-60927924 | None:intergenic | 25.0% |
| ! | AATATTCAATACTTAATGGC+AGG | - | chr1_2:60928313-60928332 | Msa0082120:intron | 25.0% |
| ! | ATATTCAATACTTAATGGCA+GGG | - | chr1_2:60928314-60928333 | Msa0082120:intron | 25.0% |
| !!! | AATACGTATATGTTTTTAGG+GGG | - | chr1_2:60928489-60928508 | Msa0082120:intron | 25.0% |
| !! | AGTATTGAATTTGGATTGAA+GGG | + | chr1_2:60928565-60928584 | None:intergenic | 25.0% |
| !!! | AAGTATTGAATTTGGATTGA+AGG | + | chr1_2:60928566-60928585 | None:intergenic | 25.0% |
| !!! | TCACTCATAAGTATTGAATT+TGG | + | chr1_2:60928574-60928593 | None:intergenic | 25.0% |
| ! | TTCCTGTAACATTAATATTG+TGG | - | chr1_2:60928634-60928653 | Msa0082120:intron | 25.0% |
| ! | ATCCACAATATTAATGTTAC+AGG | + | chr1_2:60928639-60928658 | None:intergenic | 25.0% |
| ! | AAAATGGAACCTAAATAACA+TGG | + | chr1_2:60928676-60928695 | None:intergenic | 25.0% |
| ! | TTCATGACTTGAGAATAAAA+TGG | + | chr1_2:60928692-60928711 | None:intergenic | 25.0% |
| !!! | TTCCTATTTTGAATTGTTAC+AGG | - | chr1_2:60928721-60928740 | Msa0082120:intron | 25.0% |
| ! | TACCTGTAACAATTCAAAAT+AGG | + | chr1_2:60928726-60928745 | None:intergenic | 25.0% |
| ! | TATGTCTAACGTTTAAGAAT+TGG | - | chr1_2:60929322-60929341 | Msa0082120:CDS | 25.0% |
| !! | TAGTATTTCATGTTCCTTTT+GGG | - | chr1_2:60929538-60929557 | Msa0082120:intron | 25.0% |
| ATTTGTATCTTCTGATGAAG+AGG | - | chr1_2:60926121-60926140 | Msa0082120:intron | 30.0% | |
| TTAAATATAGTTCCAACCTG+AGG | + | chr1_2:60926215-60926234 | None:intergenic | 30.0% | |
| ! | GGGTTTTTGTTAAAGGATTT+GGG | + | chr1_2:60926400-60926419 | None:intergenic | 30.0% |
| ! | TGGGTTTTTGTTAAAGGATT+TGG | + | chr1_2:60926401-60926420 | None:intergenic | 30.0% |
| ! | AAGCAGAAATTTTCGATCAA+TGG | - | chr1_2:60926601-60926620 | Msa0082120:intron | 30.0% |
| ! | GAATATGACATTTGGTGAAA+AGG | - | chr1_2:60926646-60926665 | Msa0082120:intron | 30.0% |
| !!! | TCGCTTACGAAATGTTTTTT+GGG | - | chr1_2:60926805-60926824 | Msa0082120:intron | 30.0% |
| ! | TGTTTGGAATAACCAAGTAA+AGG | + | chr1_2:60927002-60927021 | None:intergenic | 30.0% |
| TTACTTGGTTATTCCAAACA+TGG | - | chr1_2:60927002-60927021 | Msa0082120:CDS | 30.0% | |
| ATCCATGAAAAATGCAAATG+CGG | - | chr1_2:60927078-60927097 | Msa0082120:intron | 30.0% | |
| ! | TGTTTTCATAGACTCGTAAT+TGG | + | chr1_2:60927182-60927201 | None:intergenic | 30.0% |
| TTTGAGTAAGAGTGATTTCA+TGG | - | chr1_2:60927228-60927247 | Msa0082120:intron | 30.0% | |
| ! | TCATGATAATGAATGGTTGA+AGG | - | chr1_2:60927285-60927304 | Msa0082120:intron | 30.0% |
| ! | CATGATAATGAATGGTTGAA+GGG | - | chr1_2:60927286-60927305 | Msa0082120:intron | 30.0% |
| ! | ATGATAATGAATGGTTGAAG+GGG | - | chr1_2:60927287-60927306 | Msa0082120:intron | 30.0% |
| ! | ATATGTAAGAGACACGTTTT+GGG | - | chr1_2:60927342-60927361 | Msa0082120:CDS | 30.0% |
| !!! | AGTATGAACTCGTTTTTTGA+TGG | - | chr1_2:60927394-60927413 | Msa0082120:CDS | 30.0% |
| ! | ATTCAAAGAATTTCAAGTGG+AGG | - | chr1_2:60927591-60927610 | Msa0082120:CDS | 30.0% |
| CTGTTAACTTAAGAACACAA+AGG | + | chr1_2:60927813-60927832 | None:intergenic | 30.0% | |
| CTTTGTGTTCTTAAGTTAAC+AGG | - | chr1_2:60927811-60927830 | Msa0082120:intron | 30.0% | |
| TGAGAGAAAATATAAGAGGA+TGG | + | chr1_2:60927853-60927872 | None:intergenic | 30.0% | |
| GATCAAAACCACATTTAACA+AGG | + | chr1_2:60927906-60927925 | None:intergenic | 30.0% | |
| !!! | TGTGGTTTTGATCATTTAGT+TGG | - | chr1_2:60927913-60927932 | Msa0082120:intron | 30.0% |
| TAAAATGAGGAATTGGATCA+AGG | - | chr1_2:60928023-60928042 | Msa0082120:CDS | 30.0% | |
| ! | TTAGAAGACTTCCTTTTTGA+AGG | + | chr1_2:60928168-60928187 | None:intergenic | 30.0% |
| !!! | ACTCTGTTGACTTCTTTTTT+GGG | + | chr1_2:60928229-60928248 | None:intergenic | 30.0% |
| ACTTATGAGTGAAGTAAATC+AGG | - | chr1_2:60928582-60928601 | Msa0082120:intron | 30.0% | |
| TATTCTCAAGTCATGAATCA+TGG | - | chr1_2:60928695-60928714 | Msa0082120:intron | 30.0% | |
| TAGTTACTGTTAGTAGTGTT+AGG | - | chr1_2:60929178-60929197 | Msa0082120:CDS | 30.0% | |
| AGTTACTGTTAGTAGTGTTA+GGG | - | chr1_2:60929179-60929198 | Msa0082120:CDS | 30.0% | |
| ! | TATATACGATACCTTGGTTT+TGG | - | chr1_2:60929236-60929255 | Msa0082120:intron | 30.0% |
| !!! | TTTCTGGTTTTATCATCTTG+TGG | - | chr1_2:60929506-60929525 | Msa0082120:intron | 30.0% |
| ! | GAACATGAAATACTAGTTTC+TGG | + | chr1_2:60929533-60929552 | None:intergenic | 30.0% |
| ! | CTAGTATTTCATGTTCCTTT+TGG | - | chr1_2:60929537-60929556 | Msa0082120:intron | 30.0% |
| ! | CATCAGGGTTTTCATTTAAA+TGG | - | chr1_2:60929591-60929610 | Msa0082120:intron | 30.0% |
| TATCTAACTAAAACAGTTCC+AGG | + | chr1_2:60929651-60929670 | None:intergenic | 30.0% | |
| ATGGGTGATTACCCAATTTA+AGG | + | chr1_2:60925918-60925937 | None:intergenic | 35.0% | |
| !! | GTAGTTTGATCAGTTGATGA+GGG | + | chr1_2:60925941-60925960 | None:intergenic | 35.0% |
| TCATGAAGATGAAAAACCTC+AGG | - | chr1_2:60926196-60926215 | Msa0082120:intron | 35.0% | |
| AAGAGTTATGCCCAATCTAT+GGG | - | chr1_2:60926263-60926282 | Msa0082120:intron | 35.0% | |
| AACTCCAAAACCCATAGATT+GGG | + | chr1_2:60926276-60926295 | None:intergenic | 35.0% | |
| TAACTCCAAAACCCATAGAT+TGG | + | chr1_2:60926277-60926296 | None:intergenic | 35.0% | |
| TGGATCAAAGTATGTGAGTA+AGG | - | chr1_2:60926358-60926377 | Msa0082120:intron | 35.0% | |
| ! | TTGCACTGGGTTTTTGTTAA+AGG | + | chr1_2:60926407-60926426 | None:intergenic | 35.0% |
| TTTAACAAAAACCCAGTGCA+AGG | - | chr1_2:60926406-60926425 | Msa0082120:intron | 35.0% | |
| TAAAATAGCGTGCTTTGTCA+GGG | + | chr1_2:60926511-60926530 | None:intergenic | 35.0% | |
| ! | TTTTGGATCCTCGTTTGAAA+AGG | - | chr1_2:60926543-60926562 | Msa0082120:CDS | 35.0% |
| TTAGAACTCAATGATCAAGC+TGG | - | chr1_2:60926569-60926588 | Msa0082120:intron | 35.0% | |
| TCAATGGTTGTTGAAGCAAA+TGG | - | chr1_2:60926617-60926636 | Msa0082120:intron | 35.0% | |
| GGCTATGAGAATATGACATT+TGG | - | chr1_2:60926638-60926657 | Msa0082120:intron | 35.0% | |
| !!! | GTCGCTTACGAAATGTTTTT+TGG | - | chr1_2:60926804-60926823 | Msa0082120:intron | 35.0% |
| ! | AGGGCTGCATATGAATATTT+TGG | - | chr1_2:60926842-60926861 | Msa0082120:CDS | 35.0% |
| ATGGTTTACTCCAACAAATG+GGG | + | chr1_2:60926924-60926943 | None:intergenic | 35.0% | |
| GATGGTTTACTCCAACAAAT+GGG | + | chr1_2:60926925-60926944 | None:intergenic | 35.0% | |
| TGATGGTTTACTCCAACAAA+TGG | + | chr1_2:60926926-60926945 | None:intergenic | 35.0% | |
| TTTGTTGGAGTAAACCATCA+TGG | - | chr1_2:60926926-60926945 | Msa0082120:intron | 35.0% | |
| AGGATACTAAGTCCTTTACT+TGG | - | chr1_2:60926987-60927006 | Msa0082120:CDS | 35.0% | |
| TGATCGGTAATTATGGCATT+TGG | + | chr1_2:60927052-60927071 | None:intergenic | 35.0% | |
| TCTGTCTTGATCGGTAATTA+TGG | + | chr1_2:60927059-60927078 | None:intergenic | 35.0% | |
| TTTCATGGATCTGTCTTGAT+CGG | + | chr1_2:60927068-60927087 | None:intergenic | 35.0% | |
| !! | GAGTATCTACTTAGCTTTTC+TGG | + | chr1_2:60927160-60927179 | None:intergenic | 35.0% |
| AGAGTGATTTCATGGAAAAG+TGG | - | chr1_2:60927236-60927255 | Msa0082120:intron | 35.0% | |
| GAGTGATTTCATGGAAAAGT+GGG | - | chr1_2:60927237-60927256 | Msa0082120:intron | 35.0% | |
| ! | CATATGTAAGAGACACGTTT+TGG | - | chr1_2:60927341-60927360 | Msa0082120:CDS | 35.0% |
| !! | AAGGAAAACAAGGCTGATTT+TGG | - | chr1_2:60927490-60927509 | Msa0082120:intron | 35.0% |
| !! | TCATACTTGCTTTGAGAGAT+TGG | - | chr1_2:60927633-60927652 | Msa0082120:CDS | 35.0% |
| CTCAAAGTCTTTCTCATTGA+AGG | + | chr1_2:60927737-60927756 | None:intergenic | 35.0% | |
| CCACTGAGAGAAAATATAAG+AGG | + | chr1_2:60927857-60927876 | None:intergenic | 35.0% | |
| ! | CCTCTTATATTTTCTCTCAG+TGG | - | chr1_2:60927854-60927873 | Msa0082120:intron | 35.0% |
| ! | CTTATATTTTCTCTCAGTGG+AGG | - | chr1_2:60927857-60927876 | Msa0082120:intron | 35.0% |
| AGACATACCCTTGTTAAATG+TGG | - | chr1_2:60927895-60927914 | Msa0082120:intron | 35.0% | |
| ! | CTTTTATGAAGTTGCTTCTG+AGG | - | chr1_2:60927975-60927994 | Msa0082120:CDS | 35.0% |
| !!! | CACTCTGTTGACTTCTTTTT+TGG | + | chr1_2:60928230-60928249 | None:intergenic | 35.0% |
| CAAAAAAGAAGTCAACAGAG+TGG | - | chr1_2:60928228-60928247 | Msa0082120:CDS | 35.0% | |
| ! | GTTCAAGTAGTTGATGTAGT+TGG | - | chr1_2:60928365-60928384 | Msa0082120:intron | 35.0% |
| !! | TAGGGGGAACAAATTAGTTT+TGG | - | chr1_2:60928505-60928524 | Msa0082120:intron | 35.0% |
| !!! | AGGGGGAACAAATTAGTTTT+GGG | - | chr1_2:60928506-60928525 | Msa0082120:intron | 35.0% |
| !!! | CAAATTAGTTTTGGGAGGAA+TGG | - | chr1_2:60928514-60928533 | Msa0082120:intron | 35.0% |
| ! | ATGTCGATTGTTCTCTTTGT+AGG | - | chr1_2:60928809-60928828 | Msa0082120:CDS | 35.0% |
| ! | GTGAAGATTGTTCTTTTGCT+CGG | - | chr1_2:60928894-60928913 | Msa0082120:CDS | 35.0% |
| ! | TGAAGATTGTTCTTTTGCTC+GGG | - | chr1_2:60928895-60928914 | Msa0082120:CDS | 35.0% |
| ! | TTTCGTGTTTTTCCTTTGCT+AGG | - | chr1_2:60928948-60928967 | Msa0082120:CDS | 35.0% |
| ! | TTCGTGTTTTTCCTTTGCTA+GGG | - | chr1_2:60928949-60928968 | Msa0082120:CDS | 35.0% |
| ! | ACAGCATAGACTTTTGCATT+AGG | - | chr1_2:60929140-60929159 | Msa0082120:CDS | 35.0% |
| ! | CAGCATAGACTTTTGCATTA+GGG | - | chr1_2:60929141-60929160 | Msa0082120:CDS | 35.0% |
| ! | AGCATAGACTTTTGCATTAG+GGG | - | chr1_2:60929142-60929161 | Msa0082120:CDS | 35.0% |
| !! | ACCAAGGTATCGTATATATG+CGG | + | chr1_2:60929234-60929253 | None:intergenic | 35.0% |
| CTAACGTTTAAGAATTGGAG+TGG | - | chr1_2:60929327-60929346 | Msa0082120:CDS | 35.0% | |
| AGAATTGGAGTGGTATAATG+AGG | - | chr1_2:60929337-60929356 | Msa0082120:CDS | 35.0% | |
| TCGATGAAATTTGTCTTCAC+AGG | - | chr1_2:60929375-60929394 | Msa0082120:CDS | 35.0% | |
| CGATGAAATTTGTCTTCACA+GGG | - | chr1_2:60929376-60929395 | Msa0082120:CDS | 35.0% | |
| TATGTAAGGCTGCATTGTAA+GGG | - | chr1_2:60929422-60929441 | Msa0082120:CDS | 35.0% | |
| TCTGTACAATTCTCTGTTTC+TGG | - | chr1_2:60929490-60929509 | Msa0082120:intron | 35.0% | |
| !! | TTGATCAGTTGATGAGGGAT+GGG | + | chr1_2:60925936-60925955 | None:intergenic | 40.0% |
| !! | TTTGATCAGTTGATGAGGGA+TGG | + | chr1_2:60925937-60925956 | None:intergenic | 40.0% |
| ! | GGTAGTTTGATCAGTTGATG+AGG | + | chr1_2:60925942-60925961 | None:intergenic | 40.0% |
| TGATGAAGAGGAAATCAGAG+AGG | - | chr1_2:60926133-60926152 | Msa0082120:intron | 40.0% | |
| GATGAAGAGGAAATCAGAGA+GGG | - | chr1_2:60926134-60926153 | Msa0082120:intron | 40.0% | |
| GAAGATGAAAAACCTCAGGT+TGG | - | chr1_2:60926200-60926219 | Msa0082120:intron | 40.0% | |
| CAAGAGTTATGCCCAATCTA+TGG | - | chr1_2:60926262-60926281 | Msa0082120:intron | 40.0% | |
| ! | TATGCCCAATCTATGGGTTT+TGG | - | chr1_2:60926269-60926288 | Msa0082120:intron | 40.0% |
| TTTACTCTAGCATGTAGTCG+TGG | - | chr1_2:60926338-60926357 | Msa0082120:intron | 40.0% | |
| !! | ATTCAATCTAGCCTTGCACT+GGG | + | chr1_2:60926420-60926439 | None:intergenic | 40.0% |
| CTAAAATAGCGTGCTTTGTC+AGG | + | chr1_2:60926512-60926531 | None:intergenic | 40.0% | |
| ! | TCTAACCTCCTTTTCAAACG+AGG | + | chr1_2:60926554-60926573 | None:intergenic | 40.0% |
| ! | AGCCGCATTTGCATTTTTCA+TGG | + | chr1_2:60927083-60927102 | None:intergenic | 40.0% |
| AACGTGTCTCTTACATATGC+AGG | + | chr1_2:60927340-60927359 | None:intergenic | 40.0% | |
| ! | TTGCATTGGTGAATGCTTTC+TGG | + | chr1_2:60927570-60927589 | None:intergenic | 40.0% |
| !! | ACTTGCTTTGAGAGATTGGA+AGG | - | chr1_2:60927637-60927656 | Msa0082120:CDS | 40.0% |
| ! | TATTTTCTCTCAGTGGAGGA+AGG | - | chr1_2:60927861-60927880 | Msa0082120:intron | 40.0% |
| CTTTACTTCGAGTCGGTATA+GGG | + | chr1_2:60928137-60928156 | None:intergenic | 40.0% | |
| !! | CTATACCGACTCGAAGTAAA+GGG | - | chr1_2:60928136-60928155 | Msa0082120:CDS | 40.0% |
| !! | GAAGACTTCCTTTTTGAAGG+AGG | + | chr1_2:60928165-60928184 | None:intergenic | 40.0% |
| ACAGAGTGGAAATCAACAAG+AGG | - | chr1_2:60928242-60928261 | Msa0082120:CDS | 40.0% | |
| CTTGTACTTTAGATGCACAC+AGG | + | chr1_2:60928340-60928359 | None:intergenic | 40.0% | |
| !!! | GGGAACAAATTAGTTTTGGG+AGG | - | chr1_2:60928509-60928528 | Msa0082120:intron | 40.0% |
| !!! | ATGTGCTGGACTTTTGGTTT+GGG | - | chr1_2:60928988-60929007 | Msa0082120:intron | 40.0% |
| ACTTAAAACCTTTGCTGCCA+AGG | + | chr1_2:60929025-60929044 | None:intergenic | 40.0% | |
| !!! | GCAGCAAAGGTTTTAAGTCT+GGG | - | chr1_2:60929027-60929046 | Msa0082120:CDS | 40.0% |
| !!! | CAGCAAAGGTTTTAAGTCTG+GGG | - | chr1_2:60929028-60929047 | Msa0082120:CDS | 40.0% |
| !!! | AGCAAAGGTTTTAAGTCTGG+GGG | - | chr1_2:60929029-60929048 | Msa0082120:CDS | 40.0% |
| ! | GTCAAGTGCTTGACAAGTTT+TGG | - | chr1_2:60929065-60929084 | Msa0082120:CDS | 40.0% |
| !!! | GTGCTTGACAAGTTTTGGTT+TGG | - | chr1_2:60929070-60929089 | Msa0082120:CDS | 40.0% |
| AAAAGTCTATGCTGTCAAGG+AGG | + | chr1_2:60929135-60929154 | None:intergenic | 40.0% | |
| TGCAAAAGTCTATGCTGTCA+AGG | + | chr1_2:60929138-60929157 | None:intergenic | 40.0% | |
| ! | GCATAGACTTTTGCATTAGG+GGG | - | chr1_2:60929143-60929162 | Msa0082120:CDS | 40.0% |
| GTGTTAGGGTGTATTCTGTT+TGG | - | chr1_2:60929193-60929212 | Msa0082120:CDS | 40.0% | |
| CGTATATATGCGGCTACAAT+GGG | + | chr1_2:60929224-60929243 | None:intergenic | 40.0% | |
| TCGTATATATGCGGCTACAA+TGG | + | chr1_2:60929225-60929244 | None:intergenic | 40.0% | |
| ACACACGAAAACCAAAACCA+AGG | + | chr1_2:60929250-60929269 | None:intergenic | 40.0% | |
| !!! | TGGTTTTGGTTTTCGTGTGT+TGG | - | chr1_2:60929250-60929269 | Msa0082120:CDS | 40.0% |
| CTATGTAAGGCTGCATTGTA+AGG | - | chr1_2:60929421-60929440 | Msa0082120:CDS | 40.0% | |
| TCATGCTACATGTTGAAGCT+TGG | - | chr1_2:60929446-60929465 | Msa0082120:intron | 40.0% | |
| ACATGTTGAAGCTTGGCATA+AGG | - | chr1_2:60929453-60929472 | Msa0082120:intron | 40.0% | |
| TCTAGCTGACAACAATTTGC+AGG | + | chr1_2:60929564-60929583 | None:intergenic | 40.0% | |
| ! | TCAGCTAGAACTTGTTCATC+AGG | - | chr1_2:60929575-60929594 | Msa0082120:intron | 40.0% |
| ! | CAGCTAGAACTTGTTCATCA+GGG | - | chr1_2:60929576-60929595 | Msa0082120:intron | 40.0% |
| AAGATTTCAAAAGGGAAGCC+TGG | - | chr1_2:60929630-60929649 | Msa0082120:intron | 40.0% | |
| !! | CATTCAATCTAGCCTTGCAC+TGG | + | chr1_2:60926421-60926440 | None:intergenic | 45.0% |
| TGGATCCTCGTTTGAAAAGG+AGG | - | chr1_2:60926546-60926565 | Msa0082120:CDS | 45.0% | |
| AAAGTGAGGAGACTACGACT+TGG | - | chr1_2:60926689-60926708 | Msa0082120:CDS | 45.0% | |
| AAGTGAGGAGACTACGACTT+GGG | - | chr1_2:60926690-60926709 | Msa0082120:CDS | 45.0% | |
| ! | ATGCCTTTTGCCCCATTTGT+TGG | - | chr1_2:60926911-60926930 | Msa0082120:intron | 45.0% |
| ACTCCAACAAATGGGGCAAA+AGG | + | chr1_2:60926917-60926936 | None:intergenic | 45.0% | |
| ! | ACAACACAGATTGGCCATGA+TGG | + | chr1_2:60926943-60926962 | None:intergenic | 45.0% |
| TCATGGCCAATCTGTGTTGT+TGG | - | chr1_2:60926943-60926962 | Msa0082120:intron | 45.0% | |
| ! | CATGGCCAATCTGTGTTGTT+GGG | - | chr1_2:60926944-60926963 | Msa0082120:intron | 45.0% |
| ! | CTGTGCTTTATTGTCGAAGG+AGG | - | chr1_2:60926967-60926986 | Msa0082120:CDS | 45.0% |
| GCATGCACTCTAACCATGTT+TGG | + | chr1_2:60927018-60927037 | None:intergenic | 45.0% | |
| ACATGGTTAGAGTGCATGCA+TGG | - | chr1_2:60927019-60927038 | Msa0082120:CDS | 45.0% | |
| ! | ACCATCGATGACGAGCTTTT+GGG | + | chr1_2:60927111-60927130 | None:intergenic | 45.0% |
| !! | TGTAAGAGACACGTTTTGGG+CGG | - | chr1_2:60927345-60927364 | Msa0082120:CDS | 45.0% |
| AACCATCTTCCACAATGCCA+GGG | + | chr1_2:60928083-60928102 | None:intergenic | 45.0% | |
| CCTTTACTTCGAGTCGGTAT+AGG | + | chr1_2:60928138-60928157 | None:intergenic | 45.0% | |
| !! | CCTATACCGACTCGAAGTAA+AGG | - | chr1_2:60928135-60928154 | Msa0082120:CDS | 45.0% |
| !!! | AGTTTTGGGAGGAATGGACA+TGG | - | chr1_2:60928520-60928539 | Msa0082120:intron | 45.0% |
| ACGACGACAGATCATTCACA+TGG | + | chr1_2:60928842-60928861 | None:intergenic | 45.0% | |
| !! | CATGTGCTGGACTTTTGGTT+TGG | - | chr1_2:60928987-60929006 | Msa0082120:intron | 45.0% |
| TAAAACCTTTGCTGCCAAGG+AGG | + | chr1_2:60929022-60929041 | None:intergenic | 45.0% | |
| !!! | GGCAGCAAAGGTTTTAAGTC+TGG | - | chr1_2:60929026-60929045 | Msa0082120:CDS | 45.0% |
| GAAACCTGTCAAGCACATGA+CGG | + | chr1_2:60929096-60929115 | None:intergenic | 45.0% | |
| GTCATGTGCTTGACAGGTTT+CGG | - | chr1_2:60929095-60929114 | Msa0082120:CDS | 45.0% | |
| GCCGCATATATACGATACCT+TGG | - | chr1_2:60929230-60929249 | Msa0082120:intron | 45.0% | |
| AAGACGTAACAGTTGTGGCT+AGG | + | chr1_2:60929279-60929298 | None:intergenic | 45.0% | |
| CGTACAAGACGTAACAGTTG+TGG | + | chr1_2:60929284-60929303 | None:intergenic | 45.0% | |
| CAACAATTTGCAGGCCCAAA+AGG | + | chr1_2:60929555-60929574 | None:intergenic | 45.0% | |
| AGTGAGGAGACTACGACTTG+GGG | - | chr1_2:60926691-60926710 | Msa0082120:CDS | 50.0% | |
| TTTGGGCAGATGCGAGATGT+AGG | - | chr1_2:60926822-60926841 | Msa0082120:CDS | 50.0% | |
| TTGGGCAGATGCGAGATGTA+GGG | - | chr1_2:60926823-60926842 | Msa0082120:CDS | 50.0% | |
| CACAGCCCAACAACACAGAT+TGG | + | chr1_2:60926952-60926971 | None:intergenic | 50.0% | |
| ! | GGGCTGTGCTTTATTGTCGA+AGG | - | chr1_2:60926964-60926983 | Msa0082120:CDS | 50.0% |
| TCCCAAAAGCTCGTCATCGA+TGG | - | chr1_2:60927107-60927126 | Msa0082120:intron | 50.0% | |
| ! | CACCATCGATGACGAGCTTT+TGG | + | chr1_2:60927112-60927131 | None:intergenic | 50.0% |
| CTCGTCATCGATGGTGTTTG+TGG | - | chr1_2:60927116-60927135 | Msa0082120:intron | 50.0% | |
| !! | GTAAGAGACACGTTTTGGGC+GGG | - | chr1_2:60927346-60927365 | Msa0082120:CDS | 50.0% |
| !! | ACCTCTAAAGAAGCATCCCC+TGG | - | chr1_2:60928063-60928082 | Msa0082120:CDS | 50.0% |
| ACCATCTTCCACAATGCCAG+GGG | + | chr1_2:60928082-60928101 | None:intergenic | 50.0% | |
| GAACCATCTTCCACAATGCC+AGG | + | chr1_2:60928084-60928103 | None:intergenic | 50.0% | |
| !! | AAGGGCGTCCTCCTTCAAAA+AGG | - | chr1_2:60928154-60928173 | Msa0082120:CDS | 50.0% |
| TTTGGGAGGAATGGACATGG+TGG | - | chr1_2:60928523-60928542 | Msa0082120:intron | 50.0% | |
| ! | GCTGTCATGTGCTGGACTTT+TGG | - | chr1_2:60928982-60929001 | Msa0082120:intron | 50.0% |
| !! | TTTGGGCTTGTTGACCTCCT+TGG | - | chr1_2:60929005-60929024 | Msa0082120:intron | 50.0% |
| TGCTTGACAGGTTTCGGTCT+GGG | - | chr1_2:60929101-60929120 | Msa0082120:CDS | 50.0% | |
| GCCAGGGGATGCTTCTTTAG+AGG | + | chr1_2:60928067-60928086 | None:intergenic | 55.0% | |
| !! | AGAAGCATCCCCTGGCATTG+TGG | - | chr1_2:60928071-60928090 | Msa0082120:CDS | 55.0% |
| TCCCCTGGCATTGTGGAAGA+TGG | - | chr1_2:60928078-60928097 | Msa0082120:CDS | 55.0% | |
| GGACGCCCTTTACTTCGAGT+CGG | + | chr1_2:60928144-60928163 | None:intergenic | 55.0% | |
| GTTGACCTCCTTGGCAGCAA+AGG | - | chr1_2:60929014-60929033 | Msa0082120:CDS | 55.0% | |
| TTGGCCGTCATGTGCTTGAC+AGG | - | chr1_2:60929089-60929108 | Msa0082120:CDS | 55.0% | |
| GTGCTTGACAGGTTTCGGTC+TGG | - | chr1_2:60929100-60929119 | Msa0082120:CDS | 55.0% | |
| !! | AGGTTTCGGTCTGGGCTAGT+TGG | - | chr1_2:60929109-60929128 | Msa0082120:CDS | 55.0% |
| ! | AGGAGACTACGACTTGGGGC+TGG | - | chr1_2:60926695-60926714 | Msa0082120:CDS | 60.0% |
| ACTTGGGGCTGGAGATGCTG+AGG | - | chr1_2:60926706-60926725 | Msa0082120:intron | 60.0% | |
| CAGCAGCAGTGCCCTAGCAA+AGG | + | chr1_2:60928963-60928982 | None:intergenic | 60.0% | |
| CTGCTGCTGCTGTCATGTGC+TGG | - | chr1_2:60928974-60928993 | Msa0082120:intron | 60.0% | |
| ! | TCGGGCACTGCTGCTGCGTT+AGG | - | chr1_2:60928913-60928932 | Msa0082120:CDS | 65.0% |
| GGCACTGCTGCTGCGTTAGG+TGG | - | chr1_2:60928916-60928935 | Msa0082120:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 60925881 | 60929671 | 60925881 | ID=Msa0082120;Name=Msa0082120 |
| chr1_2 | mRNA | 60925881 | 60929671 | 60925881 | ID=Msa0082120-mRNA-1;Parent=Msa0082120;Name=Msa0082120-mRNA-1;_AED=0.36;_eAED=0.40;_QI=0|0.33|0.18|0.81|0.4|0.31|16|0|662 |
| chr1_2 | exon | 60929650 | 60929671 | 60929650 | ID=Msa0082120-mRNA-1:exon:20012;Parent=Msa0082120-mRNA-1 |
| chr1_2 | exon | 60929247 | 60929441 | 60929247 | ID=Msa0082120-mRNA-1:exon:20011;Parent=Msa0082120-mRNA-1 |
| chr1_2 | exon | 60929012 | 60929231 | 60929012 | ID=Msa0082120-mRNA-1:exon:20010;Parent=Msa0082120-mRNA-1 |
| chr1_2 | exon | 60928771 | 60928984 | 60928771 | ID=Msa0082120-mRNA-1:exon:20009;Parent=Msa0082120-mRNA-1 |
| chr1_2 | exon | 60928132 | 60928314 | 60928132 | ID=Msa0082120-mRNA-1:exon:20008;Parent=Msa0082120-mRNA-1 |
| chr1_2 | exon | 60927940 | 60928119 | 60927940 | ID=Msa0082120-mRNA-1:exon:20007;Parent=Msa0082120-mRNA-1 |
| chr1_2 | exon | 60927823 | 60927830 | 60927823 | ID=Msa0082120-mRNA-1:exon:20006;Parent=Msa0082120-mRNA-1 |
| chr1_2 | exon | 60927556 | 60927748 | 60927556 | ID=Msa0082120-mRNA-1:exon:20005;Parent=Msa0082120-mRNA-1 |
| chr1_2 | exon | 60927289 | 60927507 | 60927289 | ID=Msa0082120-mRNA-1:exon:20004;Parent=Msa0082120-mRNA-1 |
| chr1_2 | exon | 60927146 | 60927217 | 60927146 | ID=Msa0082120-mRNA-1:exon:20003;Parent=Msa0082120-mRNA-1 |
| chr1_2 | exon | 60926949 | 60927044 | 60926949 | ID=Msa0082120-mRNA-1:exon:20002;Parent=Msa0082120-mRNA-1 |
| chr1_2 | exon | 60926810 | 60926866 | 60926810 | ID=Msa0082120-mRNA-1:exon:20001;Parent=Msa0082120-mRNA-1 |
| chr1_2 | exon | 60926679 | 60926721 | 60926679 | ID=Msa0082120-mRNA-1:exon:20000;Parent=Msa0082120-mRNA-1 |
| chr1_2 | exon | 60926442 | 60926582 | 60926442 | ID=Msa0082120-mRNA-1:exon:19999;Parent=Msa0082120-mRNA-1 |
| chr1_2 | exon | 60926115 | 60926122 | 60926115 | ID=Msa0082120-mRNA-1:exon:19998;Parent=Msa0082120-mRNA-1 |
| chr1_2 | exon | 60925881 | 60926018 | 60925881 | ID=Msa0082120-mRNA-1:exon:19997;Parent=Msa0082120-mRNA-1 |
| chr1_2 | CDS | 60929650 | 60929671 | 60929650 | ID=Msa0082120-mRNA-1:cds;Parent=Msa0082120-mRNA-1 |
| chr1_2 | CDS | 60929247 | 60929441 | 60929247 | ID=Msa0082120-mRNA-1:cds;Parent=Msa0082120-mRNA-1 |
| chr1_2 | CDS | 60929012 | 60929231 | 60929012 | ID=Msa0082120-mRNA-1:cds;Parent=Msa0082120-mRNA-1 |
| chr1_2 | CDS | 60928771 | 60928984 | 60928771 | ID=Msa0082120-mRNA-1:cds;Parent=Msa0082120-mRNA-1 |
| chr1_2 | CDS | 60928132 | 60928314 | 60928132 | ID=Msa0082120-mRNA-1:cds;Parent=Msa0082120-mRNA-1 |
| chr1_2 | CDS | 60927940 | 60928119 | 60927940 | ID=Msa0082120-mRNA-1:cds;Parent=Msa0082120-mRNA-1 |
| chr1_2 | CDS | 60927823 | 60927830 | 60927823 | ID=Msa0082120-mRNA-1:cds;Parent=Msa0082120-mRNA-1 |
| chr1_2 | CDS | 60927556 | 60927748 | 60927556 | ID=Msa0082120-mRNA-1:cds;Parent=Msa0082120-mRNA-1 |
| chr1_2 | CDS | 60927289 | 60927507 | 60927289 | ID=Msa0082120-mRNA-1:cds;Parent=Msa0082120-mRNA-1 |
| chr1_2 | CDS | 60927146 | 60927217 | 60927146 | ID=Msa0082120-mRNA-1:cds;Parent=Msa0082120-mRNA-1 |
| chr1_2 | CDS | 60926949 | 60927044 | 60926949 | ID=Msa0082120-mRNA-1:cds;Parent=Msa0082120-mRNA-1 |
| chr1_2 | CDS | 60926810 | 60926866 | 60926810 | ID=Msa0082120-mRNA-1:cds;Parent=Msa0082120-mRNA-1 |
| chr1_2 | CDS | 60926679 | 60926721 | 60926679 | ID=Msa0082120-mRNA-1:cds;Parent=Msa0082120-mRNA-1 |
| chr1_2 | CDS | 60926442 | 60926582 | 60926442 | ID=Msa0082120-mRNA-1:cds;Parent=Msa0082120-mRNA-1 |
| chr1_2 | CDS | 60926115 | 60926122 | 60926115 | ID=Msa0082120-mRNA-1:cds;Parent=Msa0082120-mRNA-1 |
| chr1_2 | CDS | 60925881 | 60926018 | 60925881 | ID=Msa0082120-mRNA-1:cds;Parent=Msa0082120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
