AlfalfaGEDB | Msa0082570

M. sativa cultivar zhongmu-4 / Msa0082570

KEGG: K04730
GO: GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0010065 GO:0010067 GO:0010087 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0048316 GO:0048507 GO:0048508 GO:0048608 GO:0048731 GO:0048856 GO:0061458
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0082570	GAU46920.1	85.012	407	61	0	3	409	611	1017	0.0	718

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0082570	sp\|C0LGP4\|Y3475_ARATH	48.662	411	186	10	3	400	596	994	1.40e-118	371

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0082570	A0A2Z6PAW3	85.012	407	61	0	3	409	611	1017	0.0	718

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0082570	MtrunA17_Chr1g0196011	85.645	411	57	2	1	409	440	850	0.0	712
Msa0082570	MtrunA17_Chr1g0196031	86.098	410	56	1	1	409	649	1058	0.0	709
Msa0082570	MtrunA17_Chr1g0196001	88.064	377	42	2	1	376	611	985	0.0	680
Msa0082570	MtrunA17_Chr5g0408611	58.680	409	160	6	3	407	605	1008	5.07e-168	497
Msa0082570	MtrunA17_Chr5g0408621	58.293	410	165	3	1	407	649	1055	5.58e-168	498
Msa0082570	MtrunA17_Chr5g0419221	58.881	411	157	7	3	407	616	1020	1.29e-166	494
Msa0082570	MtrunA17_Chr5g0408801	60.244	410	153	5	3	407	617	1021	2.33e-164	488
Msa0082570	MtrunA17_Chr5g0403401	59.559	408	157	6	3	406	605	1008	2.80e-164	488
Msa0082570	MtrunA17_Chr5g0408571	57.664	411	162	7	3	407	95	499	4.07e-164	470
Msa0082570	MtrunA17_Chr5g0408741	59.658	409	153	4	3	407	521	921	8.95e-163	481

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0082570	AT3G47570.1	48.662	411	186	10	3	400	596	994	1.43e-119	371
Msa0082570	AT5G39390.1	44.828	406	176	8	3	400	125	490	2.74e-112	338
Msa0082570	AT3G47580.1	45.122	410	202	6	3	400	597	995	3.32e-112	352
Msa0082570	AT3G47090.1	45.610	410	198	9	3	400	597	993	1.56e-110	347
Msa0082570	AT5G20480.1	45.652	414	185	9	3	400	604	993	1.19e-109	345
Msa0082570	AT5G20480.2	45.652	414	185	9	3	400	604	993	1.19e-109	345
Msa0082570	AT3G47110.1	45.146	412	201	5	3	400	612	1012	1.89e-108	342
Msa0082570	AT2G24130.1	43.019	265	138	5	89	346	647	905	3.33e-61	213
Msa0082570	AT2G24130.2	43.019	265	138	5	89	346	662	920	3.50e-61	213
Msa0082570	AT5G01550.1	38.062	289	166	7	32	318	309	586	1.10e-55	195

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Find 85 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATTAGAAATTGTTAG+TGG	0.414376	1_2:-61401823	Msa0082570:CDS
AAATGTCAGGCTTTGCGGTG+GGG	0.586864	1_2:-61402400	Msa0082570:CDS
AACAATTGAGCAACTTCCAA+AGG	0.546860	1_2:-61402196	Msa0082570:CDS
AACCAGCTCAATGGGAATAA+AGG	0.317409	1_2:-61401635	Msa0082570:CDS
AACTGCACCATGCCACTGAT+GGG	0.540282	1_2:-61402161	Msa0082570:CDS
AAGAGAAAGAATCAATATCA+AGG	0.520373	1_2:-61401192	Msa0082570:CDS
AAGGCGACATGTACAGCTTT+GGG	0.422299	1_2:-61401466	Msa0082570:CDS
AATAAACAAACCAGCTCAAT+GGG	0.443008	1_2:-61401643	Msa0082570:CDS
ACAATCTCCAAAATGTCATT+TGG	0.371869	1_2:+61401350	None:intergenic
ACCAGCTCAATGGGAATAAA+GGG	0.356762	1_2:-61401634	Msa0082570:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCTATCAGATAATGAGGAAA+AGG	-	chr1_2:61401347-61401366	Msa0082570:CDS	30.0%
TTGCTCAATTGTTGAATCAA+GGG	+	chr1_2:61401386-61401405	None:intergenic	30.0%
GTAATGCTTTCAGAAATATC+AGG	-	chr1_2:61401590-61401609	Msa0082570:intron	30.0%
ATCAATTGTTGAAACAAGTC+TGG	+	chr1_2:61401917-61401936	None:intergenic	30.0%
AATAAACAAACCAGCTCAAT+GGG	-	chr1_2:61401946-61401965	Msa0082570:CDS	30.0%
TTCAAACATTATATACCTGG+AGG	+	chr1_2:61401997-61402016	None:intergenic	30.0%
AACATGCATATTTCAGAGTA+TGG	-	chr1_2:61402077-61402096	Msa0082570:CDS	30.0%
TCTTTAAACATTGCATCAGT+TGG	+	chr1_2:61402182-61402201	None:intergenic	30.0%
ACTGATGCAATGTTTAAAGA+TGG	-	chr1_2:61402182-61402201	Msa0082570:CDS	30.0%
ACAATCTCCAAAATGTCATT+TGG	+	chr1_2:61402242-61402261	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	61401145	61402466	61401145	ID=Msa0082570;Name=Msa0082570
chr1_2	mRNA	61401145	61402466	61401145	ID=Msa0082570-mRNA-1;Parent=Msa0082570;Name=Msa0082570-mRNA-1;_AED=0.44;_eAED=0.44;_QI=0\|0\|0\|1\|1\|1\|2\|0\|409
chr1_2	exon	61401611	61402466	61401611	ID=Msa0082570-mRNA-1:exon:20340;Parent=Msa0082570-mRNA-1
chr1_2	exon	61401145	61401518	61401145	ID=Msa0082570-mRNA-1:exon:20339;Parent=Msa0082570-mRNA-1
chr1_2	CDS	61401611	61402466	61401611	ID=Msa0082570-mRNA-1:cds;Parent=Msa0082570-mRNA-1
chr1_2	CDS	61401145	61401518	61401145	ID=Msa0082570-mRNA-1:cds;Parent=Msa0082570-mRNA-1

Gene Sequence

>Msa0082570

ATGCTTGGCGTTTTCCAGAATGCTAGTAGGGTTTCATTGAGTGGAAATGTCAGGCTTTGCGGTGGGGTAGCAAAACTGAATTTGAAAGTTTGCCCACCAAAAGATGTGAAAAAGAGAGAACATATTCGCCGCAAGTTGATCATCGTCATCATCTTCTCAACTGTATCTCTTCTTCTATTGTTATTTGTCCTTACTATCGTCATCTATCAGATAATGAGGAAAAGGCAGAGGAAAGCAACCCTTGATTCAACAATTGAGCAACTTCCAAAGGTATCATACCAAGAACTGCACCATGCCACTGATGGGTTCTCGGTTGGGAACTTGGTAGGAATTGGAGGTACGGGTTCTGTGTACAAAGGAGGACTTAATTCAGAAGAAAGAGTTGTTGCTGTAAAGGTTCTAAACCTTCGGAAGAAAGGAGCTCAGAAAAGTTTCATTGCCGAATGTAATGCTTTCAGAAATATCAGGCATAGAAATCTAGTCAAGATTATCACATGTTGCTCTAGTGTGGATCACAAAGGTAATGACTTTAAAGCAATTGTTTTTGAATACATGACAAATGGGAGCTTAGAGGAATGGTTGCATCGAAATGAAGAACAACATAGAACACTGAAATTCGAAAAAAGATTAGAAATTGTTAGTGGAATTGCTTCTGCATTACACTATCTTCACTATGAATGCGAGAAGCCTATTGTTCATTGTGATTTGAAACCAAGCAATGTCCTTCTTGATGATGACATGGTTGCTCATGTGAGTGATTTTGGCTTAGCCAGACTTGTTTCAACAATTGATAGGAACTCCAATAAACAAACCAGCTCAATGGGAATAAAGGGGACTATAGGTTATACTCCTCCAGAGTATGGAATGGATTCTCAATTGTCAACAGAAGGCGACATGTACAGCTTTGGGATTCTTCTTTTGGAGATGTTGACTGGGAGAAGACCAACTGATGCAATGTTTAAAGATGGTCACAACCTCCACAACTACGTGAAAATTGCATTTCCAAATGACATTTTGGAGATTGTTGATGCAACTCTCTTCTCAGAGGAAAATGACCTTCTTGCAGTTACAACAGAGGTTGCAAGTGATTTGCATCCCAATGTTGAAAGGTGCTTATCTTCTTTATTTAACATTGGATTATCTTGTTCAGTGGAGTCTCCAAGAGAAAGAATCAATATCAAGGAAGTCATCGTGGAACTCAATATAATTTCAAAAGCTTTGGCTGATTAA

Protein sequence

>Msa0082570

MLGVFQNASRVSLSGNVRLCGGVAKLNLKVCPPKDVKKREHIRRKLIIVIIFSTVSLLLLLFVLTIVIYQIMRKRQRKATLDSTIEQLPKVSYQELHHATDGFSVGNLVGIGGTGSVYKGGLNSEERVVAVKVLNLRKKGAQKSFIAECNAFRNIRHRNLVKIITCCSSVDHKGNDFKAIVFEYMTNGSLEEWLHRNEEQHRTLKFEKRLEIVSGIASALHYLHYECEKPIVHCDLKPSNVLLDDDMVAHVSDFGLARLVSTIDRNSNKQTSSMGIKGTIGYTPPEYGMDSQLSTEGDMYSFGILLLEMLTGRRPTDAMFKDGHNLHNYVKIAFPNDILEIVDATLFSEENDLLAVTTEVASDLHPNVERCLSSLFNIGLSCSVESPRERINIKEVIVELNIISKALAD*