Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0082770 | XP_024630769.2 | 95.775 | 71 | 3 | 0 | 194 | 264 | 483 | 553 | 2.18e-34 | 141 |
| Msa0082770 | XP_024630769.2 | 97.059 | 102 | 3 | 0 | 88 | 189 | 273 | 374 | 1.65e-59 | 209 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0082770 | A0A072VK17 | 95.349 | 86 | 4 | 0 | 1 | 86 | 38 | 123 | 1.50e-51 | 174 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0082770 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0082770 | MtrunA17_Chr3g0082121 | 77.273 | 88 | 20 | 0 | 1 | 88 | 47 | 134 | 2.85e-39 | 144 |
| Msa0082770 | MtrunA17_Chr3g0082121 | 70.690 | 116 | 32 | 1 | 74 | 189 | 405 | 518 | 3.82e-38 | 141 |
| Msa0082770 | MtrunA17_Chr3g0082121 | 52.500 | 80 | 34 | 2 | 183 | 258 | 614 | 693 | 2.08e-16 | 78.6 |
| Msa0082770 | MtrunA17_Chr5g0401121 | 70.455 | 88 | 26 | 0 | 1 | 88 | 60 | 147 | 6.91e-36 | 125 |
| Msa0082770 | MtrunA17_Chr6g0458391 | 46.753 | 77 | 41 | 0 | 1 | 77 | 229 | 305 | 2.21e-19 | 87.4 |
| Msa0082770 | MtrunA17_Chr6g0458391 | 48.052 | 77 | 39 | 1 | 1 | 77 | 95 | 170 | 2.97e-14 | 72.4 |
| Msa0082770 | MtrunA17_Chr6g0458391 | 34.677 | 124 | 76 | 2 | 88 | 211 | 589 | 707 | 7.37e-13 | 68.2 |
| Msa0082770 | MtrunA17_Chr2g0324011 | 41.667 | 96 | 56 | 0 | 88 | 183 | 391 | 486 | 1.44e-18 | 85.1 |
| Msa0082770 | MtrunA17_Chr1g0203721 | 34.127 | 126 | 70 | 2 | 3 | 128 | 69 | 181 | 6.99e-17 | 80.1 |
| Msa0082770 | MtrunA17_Chr4g0033611 | 41.758 | 91 | 49 | 2 | 2 | 92 | 81 | 167 | 6.73e-13 | 66.6 |
| Msa0082770 | MtrunA17_Chr2g0329421 | 43.421 | 76 | 42 | 1 | 2 | 77 | 32 | 106 | 2.65e-12 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0082770 | AT3G59470.3 | 41.176 | 85 | 48 | 2 | 2 | 86 | 75 | 157 | 1.96e-12 | 65.9 |
| Msa0082770 | AT3G59470.1 | 41.176 | 85 | 48 | 2 | 2 | 86 | 75 | 157 | 1.96e-12 | 65.9 |
| Msa0082770 | AT3G59470.2 | 41.176 | 85 | 48 | 2 | 2 | 86 | 87 | 169 | 2.77e-12 | 65.5 |
Find 31 sgRNAs with CRISPR-Local
Find 268 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATCAAGATACTTGCATAAA+AGG | 0.217633 | 1_2:+61728114 | Msa0082770:CDS |
| TTCATCATTCGCAATTGATA+TGG | 0.254192 | 1_2:-61728587 | None:intergenic |
| TTTGAAGTCAGATATAAATT+TGG | 0.265489 | 1_2:+61727909 | Msa0082770:CDS |
| ACGCGCTGTGCATCCTGTTC+TGG | 0.282615 | 1_2:-61726893 | None:intergenic |
| TTTGGTATTCGTCGAGAATA+TGG | 0.287007 | 1_2:+61726757 | Msa0082770:CDS |
| AATGATTATAGTAAAAGAAT+TGG | 0.319753 | 1_2:+61726733 | Msa0082770:CDS |
| TATAGTAAAAGAATTGGATT+TGG | 0.342872 | 1_2:+61726739 | Msa0082770:CDS |
| GGAAATAAAAGCAGAATAGA+TGG | 0.381196 | 1_2:+61726778 | Msa0082770:CDS |
| GTTGGACTCTTCATAAACTT+TGG | 0.396971 | 1_2:-61728497 | None:intergenic |
| TCGAAAGATAGGGAAATATA+AGG | 0.398025 | 1_2:+61726933 | Msa0082770:CDS |
| AATTTATATCTGACTTCAAA+TGG | 0.429735 | 1_2:-61727906 | None:intergenic |
| ATTTGGAGTGTAAACATTTG+CGG | 0.445050 | 1_2:-61728058 | None:intergenic |
| AAAGGGATGTCAATGCTAAA+CGG | 0.487954 | 1_2:+61727953 | Msa0082770:CDS |
| AACAGGATGCACAGCGCGTA+TGG | 0.489143 | 1_2:+61726897 | Msa0082770:CDS |
| GGCAAAATGCATAAAGATGA+AGG | 0.490221 | 1_2:+61728639 | Msa0082770:CDS |
| GCATAAAAGGAGGTGAAAGA+AGG | 0.500971 | 1_2:+61728127 | Msa0082770:CDS |
| GCCTAAATTGAAAATGAAGA+AGG | 0.516431 | 1_2:+61728017 | Msa0082770:CDS |
| GCAGTTTGAATCCGAGGCAG+TGG | 0.528643 | 1_2:+61726696 | Msa0082770:CDS |
| TCTAAAGCAGAAACCAGAAC+AGG | 0.540723 | 1_2:+61726880 | Msa0082770:CDS |
| CAACATAGACACCGTTGGCA+AGG | 0.578457 | 1_2:+61728618 | Msa0082770:CDS |
| GGATGGAGAATCAAGTGGAA+TGG | 0.591122 | 1_2:+61728555 | Msa0082770:CDS |
| AAATTCATATGCCACTGCCT+CGG | 0.591670 | 1_2:-61726707 | None:intergenic |
| GGGAATGCAGTTTGAATCCG+AGG | 0.592957 | 1_2:+61726690 | None:intergenic |
| TCTGCTTTAGACTCCGCCGT+CGG | 0.605472 | 1_2:-61726868 | None:intergenic |
| CAAGATACTTGCATAAAAGG+AGG | 0.623387 | 1_2:+61728117 | Msa0082770:CDS |
| AAGATTCACATGCTTCAAAG+AGG | 0.641966 | 1_2:+61726816 | Msa0082770:CDS |
| GACAACAACATAGACACCGT+TGG | 0.650357 | 1_2:+61728613 | Msa0082770:CDS |
| AGATTCACATGCTTCAAAGA+GGG | 0.653445 | 1_2:+61726817 | Msa0082770:CDS |
| TGACAAAAGACGTCAACCGA+CGG | 0.667263 | 1_2:+61726852 | Msa0082770:CDS |
| TATCTGGATGGAGAATCAAG+TGG | 0.685001 | 1_2:+61728550 | Msa0082770:CDS |
| CAAAAGACGTCAACCGACGG+CGG | 0.706901 | 1_2:+61726855 | Msa0082770:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATGATTATAGTAAAAGAAT+TGG | + | chr1_2:61726733-61726752 | Msa0082770:CDS | 15.0% |
| !!! | ATTCTTTTATGATTTTCAAA+TGG | + | chr1_2:61727258-61727277 | Msa0082770:intron | 15.0% |
| !!! | AGCTAATAACAAATATATTT+TGG | + | chr1_2:61727290-61727309 | Msa0082770:intron | 15.0% |
| !!! | GCTAATAACAAATATATTTT+GGG | + | chr1_2:61727291-61727310 | Msa0082770:intron | 15.0% |
| !!! | TTTTTAAATTGAAGGAAAAA+TGG | + | chr1_2:61727800-61727819 | Msa0082770:intron | 15.0% |
| !!! | TTTTAAATTGAAGGAAAAAT+GGG | + | chr1_2:61727801-61727820 | Msa0082770:intron | 15.0% |
| !!! | AATTTTTTACTCACTTTAAA+AGG | + | chr1_2:61727935-61727954 | Msa0082770:CDS | 15.0% |
| !!! | ATTTTTTACTCACTTTAAAA+GGG | + | chr1_2:61727936-61727955 | Msa0082770:CDS | 15.0% |
| !! | AATGATTATAGTAAAAGAAT+TGG | + | chr1_2:61726733-61726752 | Msa0082770:CDS | 15.0% |
| !!! | ATTCTTTTATGATTTTCAAA+TGG | + | chr1_2:61727258-61727277 | Msa0082770:intron | 15.0% |
| !!! | AGCTAATAACAAATATATTT+TGG | + | chr1_2:61727290-61727309 | Msa0082770:intron | 15.0% |
| !!! | GCTAATAACAAATATATTTT+GGG | + | chr1_2:61727291-61727310 | Msa0082770:intron | 15.0% |
| !!! | TTTTTAAATTGAAGGAAAAA+TGG | + | chr1_2:61727800-61727819 | Msa0082770:intron | 15.0% |
| !!! | TTTTAAATTGAAGGAAAAAT+GGG | + | chr1_2:61727801-61727820 | Msa0082770:intron | 15.0% |
| !!! | AATTTTTTACTCACTTTAAA+AGG | + | chr1_2:61727935-61727954 | Msa0082770:CDS | 15.0% |
| !!! | ATTTTTTACTCACTTTAAAA+GGG | + | chr1_2:61727936-61727955 | Msa0082770:CDS | 15.0% |
| !! | TATAGTAAAAGAATTGGATT+TGG | + | chr1_2:61726739-61726758 | Msa0082770:CDS | 20.0% |
| !! | TGAAAATCATAAAAGAATGA+TGG | - | chr1_2:61727256-61727275 | None:intergenic | 20.0% |
| !!! | AATAACAAATATATTTTGGG+CGG | + | chr1_2:61727294-61727313 | Msa0082770:intron | 20.0% |
| !! | ATTAATGATTATGGATACTT+TGG | + | chr1_2:61727328-61727347 | Msa0082770:intron | 20.0% |
| !!! | AAAGTGAATTTTTGAATGAA+TGG | + | chr1_2:61727725-61727744 | Msa0082770:intron | 20.0% |
| !!! | GCATTCAATTTTTAAATTGA+AGG | + | chr1_2:61727792-61727811 | Msa0082770:intron | 20.0% |
| !! | AATTTATATCTGACTTCAAA+TGG | - | chr1_2:61727909-61727928 | None:intergenic | 20.0% |
| !!! | TTTGAAGTCAGATATAAATT+TGG | + | chr1_2:61727909-61727928 | Msa0082770:CDS | 20.0% |
| !! | TGAAATTCCTCAAAAAAATT+TGG | - | chr1_2:61728078-61728097 | None:intergenic | 20.0% |
| !!! | CATATCATTAACTATTTTGT+TGG | - | chr1_2:61728518-61728537 | None:intergenic | 20.0% |
| !! | TATAGTAAAAGAATTGGATT+TGG | + | chr1_2:61726739-61726758 | Msa0082770:CDS | 20.0% |
| !! | TGAAAATCATAAAAGAATGA+TGG | - | chr1_2:61727256-61727275 | None:intergenic | 20.0% |
| !!! | AATAACAAATATATTTTGGG+CGG | + | chr1_2:61727294-61727313 | Msa0082770:intron | 20.0% |
| !! | ATTAATGATTATGGATACTT+TGG | + | chr1_2:61727328-61727347 | Msa0082770:intron | 20.0% |
| !!! | AAAGTGAATTTTTGAATGAA+TGG | + | chr1_2:61727725-61727744 | Msa0082770:intron | 20.0% |
| !!! | GCATTCAATTTTTAAATTGA+AGG | + | chr1_2:61727792-61727811 | Msa0082770:intron | 20.0% |
| !! | AATTTATATCTGACTTCAAA+TGG | - | chr1_2:61727909-61727928 | None:intergenic | 20.0% |
| !!! | TTTGAAGTCAGATATAAATT+TGG | + | chr1_2:61727909-61727928 | Msa0082770:CDS | 20.0% |
| !! | TGAAATTCCTCAAAAAAATT+TGG | - | chr1_2:61728078-61728097 | None:intergenic | 20.0% |
| !!! | CATATCATTAACTATTTTGT+TGG | - | chr1_2:61728518-61728537 | None:intergenic | 20.0% |
| !! | ATTTTACTTGATCGAAAGAT+AGG | + | chr1_2:61726922-61726941 | Msa0082770:CDS | 25.0% |
| !! | TTTTACTTGATCGAAAGATA+GGG | + | chr1_2:61726923-61726942 | Msa0082770:CDS | 25.0% |
| ! | ATATATTGATGCAATTCTCT+TGG | - | chr1_2:61727091-61727110 | None:intergenic | 25.0% |
| !!! | TGGTTTTAAGCAAATTCTTA+AGG | - | chr1_2:61727162-61727181 | None:intergenic | 25.0% |
| !! | AGAATTTGCTTAAAACCAAA+AGG | + | chr1_2:61727164-61727183 | Msa0082770:intron | 25.0% |
| !! | TTGTTTGAAATATGTCATCA+AGG | - | chr1_2:61727221-61727240 | None:intergenic | 25.0% |
| !!! | ATAATGTTTTGAAAGATTCG+TGG | + | chr1_2:61727767-61727786 | Msa0082770:intron | 25.0% |
| ! | TTATGTTCGAAAAACATTCA+CGG | + | chr1_2:61727831-61727850 | Msa0082770:CDS | 25.0% |
| !!! | TTACACTCCAAATTTTTTTG+AGG | + | chr1_2:61728068-61728087 | Msa0082770:CDS | 25.0% |
| !!! | TTTTTTTGAGGAATTTCAAG+AGG | + | chr1_2:61728080-61728099 | Msa0082770:CDS | 25.0% |
| ! | TATCAAGATACTTGCATAAA+AGG | + | chr1_2:61728114-61728133 | Msa0082770:CDS | 25.0% |
| !! | CACAAATTATGATAATGCAA+AGG | + | chr1_2:61728162-61728181 | Msa0082770:intron | 25.0% |
| ! | TATGTTGTCCAAAAAATATC+TGG | + | chr1_2:61728534-61728553 | Msa0082770:CDS | 25.0% |
| !! | ATTTTACTTGATCGAAAGAT+AGG | + | chr1_2:61726922-61726941 | Msa0082770:CDS | 25.0% |
| !! | TTTTACTTGATCGAAAGATA+GGG | + | chr1_2:61726923-61726942 | Msa0082770:CDS | 25.0% |
| ! | ATATATTGATGCAATTCTCT+TGG | - | chr1_2:61727091-61727110 | None:intergenic | 25.0% |
| !!! | TGGTTTTAAGCAAATTCTTA+AGG | - | chr1_2:61727162-61727181 | None:intergenic | 25.0% |
| !! | AGAATTTGCTTAAAACCAAA+AGG | + | chr1_2:61727164-61727183 | Msa0082770:intron | 25.0% |
| !! | TTGTTTGAAATATGTCATCA+AGG | - | chr1_2:61727221-61727240 | None:intergenic | 25.0% |
| !!! | ATAATGTTTTGAAAGATTCG+TGG | + | chr1_2:61727767-61727786 | Msa0082770:intron | 25.0% |
| ! | TTATGTTCGAAAAACATTCA+CGG | + | chr1_2:61727831-61727850 | Msa0082770:CDS | 25.0% |
| !!! | TTACACTCCAAATTTTTTTG+AGG | + | chr1_2:61728068-61728087 | Msa0082770:CDS | 25.0% |
| !!! | TTTTTTTGAGGAATTTCAAG+AGG | + | chr1_2:61728080-61728099 | Msa0082770:CDS | 25.0% |
| ! | TATCAAGATACTTGCATAAA+AGG | + | chr1_2:61728114-61728133 | Msa0082770:CDS | 25.0% |
| !! | CACAAATTATGATAATGCAA+AGG | + | chr1_2:61728162-61728181 | Msa0082770:intron | 25.0% |
| ! | TATGTTGTCCAAAAAATATC+TGG | + | chr1_2:61728534-61728553 | Msa0082770:CDS | 25.0% |
| GGAAATAAAAGCAGAATAGA+TGG | + | chr1_2:61726778-61726797 | Msa0082770:CDS | 30.0% | |
| TCGAAAGATAGGGAAATATA+AGG | + | chr1_2:61726933-61726952 | Msa0082770:CDS | 30.0% | |
| AGAATCATATGAACATACTC+AGG | - | chr1_2:61727000-61727019 | None:intergenic | 30.0% | |
| TAAGCAAATTCTTAAGGTCT+TGG | - | chr1_2:61727156-61727175 | None:intergenic | 30.0% | |
| GCACAGATGATTAATGATTA+TGG | + | chr1_2:61727319-61727338 | Msa0082770:intron | 30.0% | |
| ! | ATCCTTATTTGTCTTGTAAG+TGG | - | chr1_2:61727374-61727393 | None:intergenic | 30.0% |
| AAATAAGGATTATCGACCTT+TGG | + | chr1_2:61727384-61727403 | Msa0082770:intron | 30.0% | |
| AATAAGGATTATCGACCTTT+GGG | + | chr1_2:61727385-61727404 | Msa0082770:intron | 30.0% | |
| TTGTTGGACTTAATAATCAC+AGG | + | chr1_2:61727413-61727432 | Msa0082770:intron | 30.0% | |
| ! | AAACAATTCGTTCTTTTCAG+TGG | + | chr1_2:61727473-61727492 | Msa0082770:intron | 30.0% |
| !! | TGAAACTTTTCTGAAAGAAG+TGG | + | chr1_2:61727501-61727520 | Msa0082770:intron | 30.0% |
| !! | GAAACTTTTCTGAAAGAAGT+GGG | + | chr1_2:61727502-61727521 | Msa0082770:intron | 30.0% |
| ! | TGATCTGTTAGAATGGTTTT+AGG | - | chr1_2:61727538-61727557 | None:intergenic | 30.0% |
| GTTATGCCAAAAACATTTCA+TGG | + | chr1_2:61727589-61727608 | Msa0082770:intron | 30.0% | |
| ! | CACAATCCATGAAATGTTTT+TGG | - | chr1_2:61727598-61727617 | None:intergenic | 30.0% |
| ATATAAGACAGAATGCTCTT+AGG | + | chr1_2:61727626-61727645 | Msa0082770:intron | 30.0% | |
| GCCTAAATTGAAAATGAAGA+AGG | + | chr1_2:61728017-61728036 | Msa0082770:CDS | 30.0% | |
| ! | GCCTTCTTCATTTTCAATTT+AGG | - | chr1_2:61728021-61728040 | None:intergenic | 30.0% |
| ! | ATTTGGAGTGTAAACATTTG+CGG | - | chr1_2:61728061-61728080 | None:intergenic | 30.0% |
| ! | CAAGAAACTTTTTGTTCCAT+AGG | - | chr1_2:61728208-61728227 | None:intergenic | 30.0% |
| !! | TCGTTTTAGTATGTAGTGTT+CGG | - | chr1_2:61728314-61728333 | None:intergenic | 30.0% |
| AACACTACATACTAAAACGA+TGG | + | chr1_2:61728314-61728333 | Msa0082770:intron | 30.0% | |
| TTGTCCAAAAAATATCTGGA+TGG | + | chr1_2:61728538-61728557 | Msa0082770:CDS | 30.0% | |
| !!! | TTCTCCATCCAGATATTTTT+TGG | - | chr1_2:61728545-61728564 | None:intergenic | 30.0% |
| TTCATCATTCGCAATTGATA+TGG | - | chr1_2:61728590-61728609 | None:intergenic | 30.0% | |
| GGAAATAAAAGCAGAATAGA+TGG | + | chr1_2:61726778-61726797 | Msa0082770:CDS | 30.0% | |
| TCGAAAGATAGGGAAATATA+AGG | + | chr1_2:61726933-61726952 | Msa0082770:CDS | 30.0% | |
| AGAATCATATGAACATACTC+AGG | - | chr1_2:61727000-61727019 | None:intergenic | 30.0% | |
| TAAGCAAATTCTTAAGGTCT+TGG | - | chr1_2:61727156-61727175 | None:intergenic | 30.0% | |
| GCACAGATGATTAATGATTA+TGG | + | chr1_2:61727319-61727338 | Msa0082770:intron | 30.0% | |
| ! | ATCCTTATTTGTCTTGTAAG+TGG | - | chr1_2:61727374-61727393 | None:intergenic | 30.0% |
| AAATAAGGATTATCGACCTT+TGG | + | chr1_2:61727384-61727403 | Msa0082770:intron | 30.0% | |
| AATAAGGATTATCGACCTTT+GGG | + | chr1_2:61727385-61727404 | Msa0082770:intron | 30.0% | |
| TTGTTGGACTTAATAATCAC+AGG | + | chr1_2:61727413-61727432 | Msa0082770:intron | 30.0% | |
| ! | AAACAATTCGTTCTTTTCAG+TGG | + | chr1_2:61727473-61727492 | Msa0082770:intron | 30.0% |
| !! | TGAAACTTTTCTGAAAGAAG+TGG | + | chr1_2:61727501-61727520 | Msa0082770:intron | 30.0% |
| !! | GAAACTTTTCTGAAAGAAGT+GGG | + | chr1_2:61727502-61727521 | Msa0082770:intron | 30.0% |
| ! | TGATCTGTTAGAATGGTTTT+AGG | - | chr1_2:61727538-61727557 | None:intergenic | 30.0% |
| GTTATGCCAAAAACATTTCA+TGG | + | chr1_2:61727589-61727608 | Msa0082770:intron | 30.0% | |
| ! | CACAATCCATGAAATGTTTT+TGG | - | chr1_2:61727598-61727617 | None:intergenic | 30.0% |
| ATATAAGACAGAATGCTCTT+AGG | + | chr1_2:61727626-61727645 | Msa0082770:intron | 30.0% | |
| GCCTAAATTGAAAATGAAGA+AGG | + | chr1_2:61728017-61728036 | Msa0082770:CDS | 30.0% | |
| ! | GCCTTCTTCATTTTCAATTT+AGG | - | chr1_2:61728021-61728040 | None:intergenic | 30.0% |
| ! | ATTTGGAGTGTAAACATTTG+CGG | - | chr1_2:61728061-61728080 | None:intergenic | 30.0% |
| ! | CAAGAAACTTTTTGTTCCAT+AGG | - | chr1_2:61728208-61728227 | None:intergenic | 30.0% |
| !! | TCGTTTTAGTATGTAGTGTT+CGG | - | chr1_2:61728314-61728333 | None:intergenic | 30.0% |
| AACACTACATACTAAAACGA+TGG | + | chr1_2:61728314-61728333 | Msa0082770:intron | 30.0% | |
| TTGTCCAAAAAATATCTGGA+TGG | + | chr1_2:61728538-61728557 | Msa0082770:CDS | 30.0% | |
| !!! | TTCTCCATCCAGATATTTTT+TGG | - | chr1_2:61728545-61728564 | None:intergenic | 30.0% |
| TTCATCATTCGCAATTGATA+TGG | - | chr1_2:61728590-61728609 | None:intergenic | 30.0% | |
| TTTGGTATTCGTCGAGAATA+TGG | + | chr1_2:61726757-61726776 | Msa0082770:CDS | 35.0% | |
| AAGATTCACATGCTTCAAAG+AGG | + | chr1_2:61726816-61726835 | Msa0082770:CDS | 35.0% | |
| AGATTCACATGCTTCAAAGA+GGG | + | chr1_2:61726817-61726836 | Msa0082770:CDS | 35.0% | |
| ATCATATGAACATACTCAGG+TGG | - | chr1_2:61726997-61727016 | None:intergenic | 35.0% | |
| ! | TCCTATCGACACATATTTTG+AGG | + | chr1_2:61727021-61727040 | Msa0082770:intron | 35.0% |
| ACAAGCATCACAAATTGTCT+TGG | + | chr1_2:61727045-61727064 | Msa0082770:intron | 35.0% | |
| CAAGCATCACAAATTGTCTT+GGG | + | chr1_2:61727046-61727065 | Msa0082770:intron | 35.0% | |
| CAATATATATCCAAGCAAGC+TGG | + | chr1_2:61727103-61727122 | Msa0082770:intron | 35.0% | |
| ! | CTTTAGTGATTGCTTCCTTT+TGG | - | chr1_2:61727182-61727201 | None:intergenic | 35.0% |
| AGGAAGCAATCACTAAAGTA+CGG | + | chr1_2:61727184-61727203 | Msa0082770:intron | 35.0% | |
| CACCACTTACAAGACAAATA+AGG | + | chr1_2:61727369-61727388 | Msa0082770:intron | 35.0% | |
| TGCATCTTGATCTGTTAGAA+TGG | - | chr1_2:61727545-61727564 | None:intergenic | 35.0% | |
| ! | GCGAACTCTTTTGATATAGA+TGG | - | chr1_2:61727660-61727679 | None:intergenic | 35.0% |
| TGCATGCTTCAAAATCCAAA+TGG | - | chr1_2:61727687-61727706 | None:intergenic | 35.0% | |
| ATTGAAGGAAAAATGGGCAT+AGG | + | chr1_2:61727807-61727826 | Msa0082770:intron | 35.0% | |
| AAAGGGATGTCAATGCTAAA+CGG | + | chr1_2:61727953-61727972 | Msa0082770:CDS | 35.0% | |
| CAAGATACTTGCATAAAAGG+AGG | + | chr1_2:61728117-61728136 | Msa0082770:CDS | 35.0% | |
| ! | TGATAATGCAAAGGAGAAGA+TGG | + | chr1_2:61728171-61728190 | Msa0082770:intron | 35.0% |
| ! | TGTCGTAAATTTGAGACACA+TGG | + | chr1_2:61728232-61728251 | Msa0082770:intron | 35.0% |
| !! | CGTTTTAGTATGTAGTGTTC+GGG | - | chr1_2:61728313-61728332 | None:intergenic | 35.0% |
| TTGGTCAATTTAAGCAACTG+AGG | - | chr1_2:61728439-61728458 | None:intergenic | 35.0% | |
| !! | ATGAGATTCTGAAGCTCTAT+TGG | - | chr1_2:61728458-61728477 | None:intergenic | 35.0% |
| GTTGGACTCTTCATAAACTT+TGG | - | chr1_2:61728500-61728519 | None:intergenic | 35.0% | |
| GGCAAAATGCATAAAGATGA+AGG | + | chr1_2:61728639-61728658 | Msa0082770:CDS | 35.0% | |
| TTTGGTATTCGTCGAGAATA+TGG | + | chr1_2:61726757-61726776 | Msa0082770:CDS | 35.0% | |
| AAGATTCACATGCTTCAAAG+AGG | + | chr1_2:61726816-61726835 | Msa0082770:CDS | 35.0% | |
| AGATTCACATGCTTCAAAGA+GGG | + | chr1_2:61726817-61726836 | Msa0082770:CDS | 35.0% | |
| ATCATATGAACATACTCAGG+TGG | - | chr1_2:61726997-61727016 | None:intergenic | 35.0% | |
| ! | TCCTATCGACACATATTTTG+AGG | + | chr1_2:61727021-61727040 | Msa0082770:intron | 35.0% |
| ACAAGCATCACAAATTGTCT+TGG | + | chr1_2:61727045-61727064 | Msa0082770:intron | 35.0% | |
| CAAGCATCACAAATTGTCTT+GGG | + | chr1_2:61727046-61727065 | Msa0082770:intron | 35.0% | |
| CAATATATATCCAAGCAAGC+TGG | + | chr1_2:61727103-61727122 | Msa0082770:intron | 35.0% | |
| ! | CTTTAGTGATTGCTTCCTTT+TGG | - | chr1_2:61727182-61727201 | None:intergenic | 35.0% |
| AGGAAGCAATCACTAAAGTA+CGG | + | chr1_2:61727184-61727203 | Msa0082770:intron | 35.0% | |
| CACCACTTACAAGACAAATA+AGG | + | chr1_2:61727369-61727388 | Msa0082770:intron | 35.0% | |
| TGCATCTTGATCTGTTAGAA+TGG | - | chr1_2:61727545-61727564 | None:intergenic | 35.0% | |
| ! | GCGAACTCTTTTGATATAGA+TGG | - | chr1_2:61727660-61727679 | None:intergenic | 35.0% |
| TGCATGCTTCAAAATCCAAA+TGG | - | chr1_2:61727687-61727706 | None:intergenic | 35.0% | |
| ATTGAAGGAAAAATGGGCAT+AGG | + | chr1_2:61727807-61727826 | Msa0082770:intron | 35.0% | |
| AAAGGGATGTCAATGCTAAA+CGG | + | chr1_2:61727953-61727972 | Msa0082770:CDS | 35.0% | |
| CAAGATACTTGCATAAAAGG+AGG | + | chr1_2:61728117-61728136 | Msa0082770:CDS | 35.0% | |
| ! | TGATAATGCAAAGGAGAAGA+TGG | + | chr1_2:61728171-61728190 | Msa0082770:intron | 35.0% |
| ! | TGTCGTAAATTTGAGACACA+TGG | + | chr1_2:61728232-61728251 | Msa0082770:intron | 35.0% |
| !! | CGTTTTAGTATGTAGTGTTC+GGG | - | chr1_2:61728313-61728332 | None:intergenic | 35.0% |
| TTGGTCAATTTAAGCAACTG+AGG | - | chr1_2:61728439-61728458 | None:intergenic | 35.0% | |
| !! | ATGAGATTCTGAAGCTCTAT+TGG | - | chr1_2:61728458-61728477 | None:intergenic | 35.0% |
| GTTGGACTCTTCATAAACTT+TGG | - | chr1_2:61728500-61728519 | None:intergenic | 35.0% | |
| GGCAAAATGCATAAAGATGA+AGG | + | chr1_2:61728639-61728658 | Msa0082770:CDS | 35.0% | |
| AAATTCATATGCCACTGCCT+CGG | - | chr1_2:61726710-61726729 | None:intergenic | 40.0% | |
| ! | TCTAAAGCAGAAACCAGAAC+AGG | + | chr1_2:61726880-61726899 | Msa0082770:CDS | 40.0% |
| ! | GCCTCAAAATATGTGTCGAT+AGG | - | chr1_2:61727025-61727044 | None:intergenic | 40.0% |
| ATTGTCTTGGGAGATGAATC+TGG | + | chr1_2:61727058-61727077 | Msa0082770:intron | 40.0% | |
| TATATATCCAAGCAAGCTGG+TGG | + | chr1_2:61727106-61727125 | Msa0082770:intron | 40.0% | |
| ATATATCCAAGCAAGCTGGT+GGG | + | chr1_2:61727107-61727126 | Msa0082770:intron | 40.0% | |
| ATCACTAAAGTACGGTGAAG+TGG | + | chr1_2:61727192-61727211 | Msa0082770:intron | 40.0% | |
| TCACTAAAGTACGGTGAAGT+GGG | + | chr1_2:61727193-61727212 | Msa0082770:intron | 40.0% | |
| AGTCCAACAAATACACCCAA+AGG | - | chr1_2:61727403-61727422 | None:intergenic | 40.0% | |
| !!! | ACAGGCAAACCGTCATTTTT+GGG | + | chr1_2:61727431-61727450 | Msa0082770:intron | 40.0% |
| CAATGTTGCCCCAAAAATGA+CGG | - | chr1_2:61727443-61727462 | None:intergenic | 40.0% | |
| !! | ACTTTTCTGAAAGAAGTGGG+TGG | + | chr1_2:61727505-61727524 | Msa0082770:intron | 40.0% |
| AACAGATCAAGATGCAGCAA+TGG | + | chr1_2:61727549-61727568 | Msa0082770:intron | 40.0% | |
| ! | CATTTCATGGATTGTGCACT+TGG | + | chr1_2:61727602-61727621 | Msa0082770:intron | 40.0% |
| AAAGAGTTCGCGATTCCATT+TGG | + | chr1_2:61727669-61727688 | Msa0082770:intron | 40.0% | |
| AGCATGCATAGATCTAGATG+AGG | + | chr1_2:61727699-61727718 | Msa0082770:intron | 40.0% | |
| ATGCATAGATCTAGATGAGG+AGG | + | chr1_2:61727702-61727721 | Msa0082770:intron | 40.0% | |
| GCATAAAAGGAGGTGAAAGA+AGG | + | chr1_2:61728127-61728146 | Msa0082770:CDS | 40.0% | |
| TGCAAAGGAGAAGATGGTAA+TGG | + | chr1_2:61728177-61728196 | Msa0082770:intron | 40.0% | |
| GCAAAGGAGAAGATGGTAAT+GGG | + | chr1_2:61728178-61728197 | Msa0082770:intron | 40.0% | |
| !! | GATGGTAATGGGAAATCCTA+TGG | + | chr1_2:61728189-61728208 | Msa0082770:intron | 40.0% |
| GAAGTAATCAAGGTTGGAGT+GGG | + | chr1_2:61728356-61728375 | Msa0082770:intron | 40.0% | |
| AAAAAGCCCATTTCACGAAG+CGG | + | chr1_2:61728398-61728417 | Msa0082770:intron | 40.0% | |
| ATTGTACCGCTTCGTGAAAT+GGG | - | chr1_2:61728407-61728426 | None:intergenic | 40.0% | |
| TATCTGGATGGAGAATCAAG+TGG | + | chr1_2:61728550-61728569 | Msa0082770:CDS | 40.0% | |
| ! | TATGCATTTTGCCTTGCCAA+CGG | - | chr1_2:61728632-61728651 | None:intergenic | 40.0% |
| AAATTCATATGCCACTGCCT+CGG | - | chr1_2:61726710-61726729 | None:intergenic | 40.0% | |
| ! | TCTAAAGCAGAAACCAGAAC+AGG | + | chr1_2:61726880-61726899 | Msa0082770:CDS | 40.0% |
| ! | GCCTCAAAATATGTGTCGAT+AGG | - | chr1_2:61727025-61727044 | None:intergenic | 40.0% |
| ATTGTCTTGGGAGATGAATC+TGG | + | chr1_2:61727058-61727077 | Msa0082770:intron | 40.0% | |
| TATATATCCAAGCAAGCTGG+TGG | + | chr1_2:61727106-61727125 | Msa0082770:intron | 40.0% | |
| ATATATCCAAGCAAGCTGGT+GGG | + | chr1_2:61727107-61727126 | Msa0082770:intron | 40.0% | |
| ATCACTAAAGTACGGTGAAG+TGG | + | chr1_2:61727192-61727211 | Msa0082770:intron | 40.0% | |
| TCACTAAAGTACGGTGAAGT+GGG | + | chr1_2:61727193-61727212 | Msa0082770:intron | 40.0% | |
| AGTCCAACAAATACACCCAA+AGG | - | chr1_2:61727403-61727422 | None:intergenic | 40.0% | |
| !!! | ACAGGCAAACCGTCATTTTT+GGG | + | chr1_2:61727431-61727450 | Msa0082770:intron | 40.0% |
| CAATGTTGCCCCAAAAATGA+CGG | - | chr1_2:61727443-61727462 | None:intergenic | 40.0% | |
| !! | ACTTTTCTGAAAGAAGTGGG+TGG | + | chr1_2:61727505-61727524 | Msa0082770:intron | 40.0% |
| AACAGATCAAGATGCAGCAA+TGG | + | chr1_2:61727549-61727568 | Msa0082770:intron | 40.0% | |
| ! | CATTTCATGGATTGTGCACT+TGG | + | chr1_2:61727602-61727621 | Msa0082770:intron | 40.0% |
| AAAGAGTTCGCGATTCCATT+TGG | + | chr1_2:61727669-61727688 | Msa0082770:intron | 40.0% | |
| AGCATGCATAGATCTAGATG+AGG | + | chr1_2:61727699-61727718 | Msa0082770:intron | 40.0% | |
| ATGCATAGATCTAGATGAGG+AGG | + | chr1_2:61727702-61727721 | Msa0082770:intron | 40.0% | |
| GCATAAAAGGAGGTGAAAGA+AGG | + | chr1_2:61728127-61728146 | Msa0082770:CDS | 40.0% | |
| TGCAAAGGAGAAGATGGTAA+TGG | + | chr1_2:61728177-61728196 | Msa0082770:intron | 40.0% | |
| GCAAAGGAGAAGATGGTAAT+GGG | + | chr1_2:61728178-61728197 | Msa0082770:intron | 40.0% | |
| !! | GATGGTAATGGGAAATCCTA+TGG | + | chr1_2:61728189-61728208 | Msa0082770:intron | 40.0% |
| GAAGTAATCAAGGTTGGAGT+GGG | + | chr1_2:61728356-61728375 | Msa0082770:intron | 40.0% | |
| AAAAAGCCCATTTCACGAAG+CGG | + | chr1_2:61728398-61728417 | Msa0082770:intron | 40.0% | |
| ATTGTACCGCTTCGTGAAAT+GGG | - | chr1_2:61728407-61728426 | None:intergenic | 40.0% | |
| TATCTGGATGGAGAATCAAG+TGG | + | chr1_2:61728550-61728569 | Msa0082770:CDS | 40.0% | |
| ! | TATGCATTTTGCCTTGCCAA+CGG | - | chr1_2:61728632-61728651 | None:intergenic | 40.0% |
| TGACAAAAGACGTCAACCGA+CGG | + | chr1_2:61726852-61726871 | Msa0082770:CDS | 45.0% | |
| AGCTCAACATAACCACCTTC+TGG | + | chr1_2:61726969-61726988 | Msa0082770:intron | 45.0% | |
| TATATCCAAGCAAGCTGGTG+GGG | + | chr1_2:61727108-61727127 | Msa0082770:intron | 45.0% | |
| CGACCTTTGGGTGTATTTGT+TGG | + | chr1_2:61727397-61727416 | Msa0082770:intron | 45.0% | |
| !! | CACAGGCAAACCGTCATTTT+TGG | + | chr1_2:61727430-61727449 | Msa0082770:intron | 45.0% |
| !!! | CAGGCAAACCGTCATTTTTG+GGG | + | chr1_2:61727432-61727451 | Msa0082770:intron | 45.0% |
| GTTCGAAAAACATTCACGGC+AGG | + | chr1_2:61727835-61727854 | Msa0082770:CDS | 45.0% | |
| AACGATGGACAAGAGATGCA+AGG | + | chr1_2:61728329-61728348 | Msa0082770:intron | 45.0% | |
| GGAAGTAATCAAGGTTGGAG+TGG | + | chr1_2:61728355-61728374 | Msa0082770:intron | 45.0% | |
| !! | GCTTCGTGAAATGGGCTTTT+TGG | - | chr1_2:61728399-61728418 | None:intergenic | 45.0% |
| CATTGTACCGCTTCGTGAAA+TGG | - | chr1_2:61728408-61728427 | None:intergenic | 45.0% | |
| GGATGGAGAATCAAGTGGAA+TGG | + | chr1_2:61728555-61728574 | Msa0082770:CDS | 45.0% | |
| GACAACAACATAGACACCGT+TGG | + | chr1_2:61728613-61728632 | Msa0082770:CDS | 45.0% | |
| TGACAAAAGACGTCAACCGA+CGG | + | chr1_2:61726852-61726871 | Msa0082770:CDS | 45.0% | |
| AGCTCAACATAACCACCTTC+TGG | + | chr1_2:61726969-61726988 | Msa0082770:intron | 45.0% | |
| TATATCCAAGCAAGCTGGTG+GGG | + | chr1_2:61727108-61727127 | Msa0082770:intron | 45.0% | |
| CGACCTTTGGGTGTATTTGT+TGG | + | chr1_2:61727397-61727416 | Msa0082770:intron | 45.0% | |
| !! | CACAGGCAAACCGTCATTTT+TGG | + | chr1_2:61727430-61727449 | Msa0082770:intron | 45.0% |
| !!! | CAGGCAAACCGTCATTTTTG+GGG | + | chr1_2:61727432-61727451 | Msa0082770:intron | 45.0% |
| GTTCGAAAAACATTCACGGC+AGG | + | chr1_2:61727835-61727854 | Msa0082770:CDS | 45.0% | |
| AACGATGGACAAGAGATGCA+AGG | + | chr1_2:61728329-61728348 | Msa0082770:intron | 45.0% | |
| GGAAGTAATCAAGGTTGGAG+TGG | + | chr1_2:61728355-61728374 | Msa0082770:intron | 45.0% | |
| !! | GCTTCGTGAAATGGGCTTTT+TGG | - | chr1_2:61728399-61728418 | None:intergenic | 45.0% |
| CATTGTACCGCTTCGTGAAA+TGG | - | chr1_2:61728408-61728427 | None:intergenic | 45.0% | |
| GGATGGAGAATCAAGTGGAA+TGG | + | chr1_2:61728555-61728574 | Msa0082770:CDS | 45.0% | |
| GACAACAACATAGACACCGT+TGG | + | chr1_2:61728613-61728632 | Msa0082770:CDS | 45.0% | |
| CATACTCAGGTGGAACCAGA+AGG | - | chr1_2:61726987-61727006 | None:intergenic | 50.0% | |
| ATGGACAAGAGATGCAAGGC+TGG | + | chr1_2:61728333-61728352 | Msa0082770:intron | 50.0% | |
| TGGACAAGAGATGCAAGGCT+GGG | + | chr1_2:61728334-61728353 | Msa0082770:intron | 50.0% | |
| GCAAGGCTGGGAAGTAATCA+AGG | + | chr1_2:61728346-61728365 | Msa0082770:intron | 50.0% | |
| GGCTGGGAAGTAATCAAGGT+TGG | + | chr1_2:61728350-61728369 | Msa0082770:intron | 50.0% | |
| GTAATCAAGGTTGGAGTGGG+AGG | + | chr1_2:61728359-61728378 | Msa0082770:intron | 50.0% | |
| CAACATAGACACCGTTGGCA+AGG | + | chr1_2:61728618-61728637 | Msa0082770:CDS | 50.0% | |
| CATACTCAGGTGGAACCAGA+AGG | - | chr1_2:61726987-61727006 | None:intergenic | 50.0% | |
| ATGGACAAGAGATGCAAGGC+TGG | + | chr1_2:61728333-61728352 | Msa0082770:intron | 50.0% | |
| TGGACAAGAGATGCAAGGCT+GGG | + | chr1_2:61728334-61728353 | Msa0082770:intron | 50.0% | |
| GCAAGGCTGGGAAGTAATCA+AGG | + | chr1_2:61728346-61728365 | Msa0082770:intron | 50.0% | |
| GGCTGGGAAGTAATCAAGGT+TGG | + | chr1_2:61728350-61728369 | Msa0082770:intron | 50.0% | |
| GTAATCAAGGTTGGAGTGGG+AGG | + | chr1_2:61728359-61728378 | Msa0082770:intron | 50.0% | |
| CAACATAGACACCGTTGGCA+AGG | + | chr1_2:61728618-61728637 | Msa0082770:CDS | 50.0% | |
| GCAGTTTGAATCCGAGGCAG+TGG | + | chr1_2:61726696-61726715 | Msa0082770:CDS | 55.0% | |
| CAAAAGACGTCAACCGACGG+CGG | + | chr1_2:61726855-61726874 | Msa0082770:CDS | 55.0% | |
| ! | TCTGCTTTAGACTCCGCCGT+CGG | - | chr1_2:61726871-61726890 | None:intergenic | 55.0% |
| AACAGGATGCACAGCGCGTA+TGG | + | chr1_2:61726897-61726916 | Msa0082770:CDS | 55.0% | |
| ACTCAGGTGGAACCAGAAGG+TGG | - | chr1_2:61726984-61727003 | None:intergenic | 55.0% | |
| GCAGTTTGAATCCGAGGCAG+TGG | + | chr1_2:61726696-61726715 | Msa0082770:CDS | 55.0% | |
| CAAAAGACGTCAACCGACGG+CGG | + | chr1_2:61726855-61726874 | Msa0082770:CDS | 55.0% | |
| ! | TCTGCTTTAGACTCCGCCGT+CGG | - | chr1_2:61726871-61726890 | None:intergenic | 55.0% |
| AACAGGATGCACAGCGCGTA+TGG | + | chr1_2:61726897-61726916 | Msa0082770:CDS | 55.0% | |
| ACTCAGGTGGAACCAGAAGG+TGG | - | chr1_2:61726984-61727003 | None:intergenic | 55.0% | |
| ACGCGCTGTGCATCCTGTTC+TGG | - | chr1_2:61726896-61726915 | None:intergenic | 60.0% | |
| ! | CTCTACCCCACCAGCTTGCT+TGG | - | chr1_2:61727116-61727135 | None:intergenic | 60.0% |
| GCTGGTGGGGTAGAGACTGT+CGG | + | chr1_2:61727121-61727140 | Msa0082770:intron | 60.0% | |
| ACGCGCTGTGCATCCTGTTC+TGG | - | chr1_2:61726896-61726915 | None:intergenic | 60.0% | |
| ! | CTCTACCCCACCAGCTTGCT+TGG | - | chr1_2:61727116-61727135 | None:intergenic | 60.0% |
| GCTGGTGGGGTAGAGACTGT+CGG | + | chr1_2:61727121-61727140 | Msa0082770:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 61726694 | 61728675 | 61726694 | ID=Msa0082770;Name=Msa0082770 |
| chr1_2 | mRNA | 61726694 | 61728675 | 61726694 | ID=Msa0082770-mRNA-1;Parent=Msa0082770;Name=Msa0082770-mRNA-1;_AED=0.28;_eAED=0.35;_QI=0|0|0|1|1|1|3|0|264 |
| chr1_2 | exon | 61726694 | 61726954 | 61726694 | ID=Msa0082770-mRNA-1:exon:20401;Parent=Msa0082770-mRNA-1 |
| chr1_2 | exon | 61727829 | 61728148 | 61727829 | ID=Msa0082770-mRNA-1:exon:20402;Parent=Msa0082770-mRNA-1 |
| chr1_2 | exon | 61728462 | 61728675 | 61728462 | ID=Msa0082770-mRNA-1:exon:20403;Parent=Msa0082770-mRNA-1 |
| chr1_2 | CDS | 61726694 | 61726954 | 61726694 | ID=Msa0082770-mRNA-1:cds;Parent=Msa0082770-mRNA-1 |
| chr1_2 | CDS | 61727829 | 61728148 | 61727829 | ID=Msa0082770-mRNA-1:cds;Parent=Msa0082770-mRNA-1 |
| chr1_2 | CDS | 61728462 | 61728675 | 61728462 | ID=Msa0082770-mRNA-1:cds;Parent=Msa0082770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
